Query 033189
Match_columns 125
No_of_seqs 121 out of 1101
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 2.6E-21 8.7E-26 122.8 10.7 108 3-119 2-146 (146)
2 3hgm_A Universal stress protei 99.9 1.5E-21 5.2E-26 123.9 8.7 109 5-118 1-147 (147)
3 3tnj_A Universal stress protei 99.9 7.3E-21 2.5E-25 121.3 11.9 112 4-122 4-149 (150)
4 1mjh_A Protein (ATP-binding do 99.9 5.6E-21 1.9E-25 123.4 10.3 115 1-121 1-160 (162)
5 3dlo_A Universal stress protei 99.8 6E-20 2.1E-24 118.4 11.1 97 3-119 21-155 (155)
6 2dum_A Hypothetical protein PH 99.8 9.6E-20 3.3E-24 118.5 11.7 115 4-123 3-159 (170)
7 3idf_A USP-like protein; unive 99.8 5.9E-20 2E-24 115.6 8.7 103 6-119 1-138 (138)
8 3fg9_A Protein of universal st 99.8 3.3E-19 1.1E-23 114.5 11.6 105 3-119 12-156 (156)
9 2z08_A Universal stress protei 99.8 3.5E-19 1.2E-23 112.1 9.9 104 5-119 1-137 (137)
10 1tq8_A Hypothetical protein RV 99.8 1.8E-19 6E-24 117.0 6.8 109 3-122 14-160 (163)
11 3fdx_A Putative filament prote 99.8 3.5E-19 1.2E-23 112.6 7.3 104 6-119 1-143 (143)
12 2gm3_A Unknown protein; AT3G01 99.8 1.3E-18 4.3E-23 113.7 8.5 113 4-121 3-164 (175)
13 3olq_A Universal stress protei 99.7 1.2E-17 3.9E-22 118.0 9.9 112 4-122 5-152 (319)
14 3cis_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 114.1 12.0 109 4-122 17-163 (309)
15 1jmv_A USPA, universal stress 99.7 8.4E-18 2.9E-22 106.0 6.7 41 5-50 1-41 (141)
16 3loq_A Universal stress protei 99.7 1E-17 3.5E-22 117.4 7.6 110 4-122 20-164 (294)
17 3ab8_A Putative uncharacterize 99.7 7.7E-17 2.6E-21 111.4 7.2 110 7-121 1-150 (268)
18 3mt0_A Uncharacterized protein 99.7 5.7E-16 2E-20 108.3 10.9 105 5-121 133-277 (290)
19 1q77_A Hypothetical protein AQ 99.7 1.8E-16 6E-21 99.6 6.6 106 4-119 2-138 (138)
20 3cis_A Uncharacterized protein 99.6 1.3E-15 4.5E-20 107.4 10.7 107 5-121 170-307 (309)
21 3mt0_A Uncharacterized protein 99.6 2.7E-16 9.4E-21 110.0 5.8 104 4-121 5-129 (290)
22 3olq_A Universal stress protei 99.6 3.5E-15 1.2E-19 105.3 10.7 113 5-122 155-307 (319)
23 3loq_A Universal stress protei 99.6 1.9E-15 6.4E-20 105.8 8.4 106 4-123 168-293 (294)
24 3ab8_A Putative uncharacterize 99.5 2.8E-14 9.6E-19 98.5 9.4 100 5-119 153-268 (268)
25 3zqu_A Probable aromatic acid 83.7 2.6 9E-05 27.9 5.3 35 7-47 5-39 (209)
26 1g63_A Epidermin modifying enz 82.3 1.6 5.5E-05 28.2 3.8 37 5-47 1-37 (181)
27 3qjg_A Epidermin biosynthesis 78.5 3.2 0.00011 26.6 4.2 37 5-47 4-40 (175)
28 2ejb_A Probable aromatic acid 71.7 9.7 0.00033 24.7 5.2 35 7-47 2-36 (189)
29 1ni5_A Putative cell cycle pro 70.8 12 0.0004 27.4 6.0 40 6-50 13-53 (433)
30 3a2k_A TRNA(Ile)-lysidine synt 69.8 8.9 0.0003 28.3 5.3 41 6-51 18-58 (464)
31 1sbz_A Probable aromatic acid 67.8 10 0.00036 24.8 4.7 36 7-47 1-36 (197)
32 1wy5_A TILS, hypothetical UPF0 66.6 12 0.00041 26.0 5.2 40 6-50 24-64 (317)
33 3lqk_A Dipicolinate synthase s 66.1 8.7 0.0003 25.2 4.1 37 5-47 6-43 (201)
34 1p3y_1 MRSD protein; flavoprot 64.6 6.8 0.00023 25.5 3.4 36 6-47 8-43 (194)
35 1qzu_A Hypothetical protein MD 61.4 8.4 0.00029 25.4 3.4 38 5-47 18-55 (206)
36 3mcu_A Dipicolinate synthase, 56.5 14 0.00049 24.3 3.9 37 5-47 4-41 (207)
37 1nmo_A Hypothetical protein YB 45.3 31 0.0011 23.2 4.2 32 4-47 33-64 (247)
38 2yyb_A Hypothetical protein TT 44.0 25 0.00086 23.6 3.6 31 5-47 35-65 (242)
39 1mvl_A PPC decarboxylase athal 43.0 35 0.0012 22.4 4.1 36 5-47 18-53 (209)
40 3k32_A Uncharacterized protein 42.8 42 0.0014 21.5 4.4 38 4-50 4-41 (203)
41 2zki_A 199AA long hypothetical 42.6 60 0.0021 20.2 5.2 39 7-50 5-43 (199)
42 2fyw_A Conserved hypothetical 42.1 25 0.00086 23.9 3.4 32 4-47 36-67 (267)
43 3rxy_A NIF3 protein; structura 42.0 23 0.00078 24.5 3.1 31 5-47 37-67 (278)
44 4edg_A DNA primase; catalytic 40.9 42 0.0014 23.7 4.4 34 7-45 196-229 (329)
45 3ih5_A Electron transfer flavo 40.6 50 0.0017 21.6 4.6 40 6-50 3-47 (217)
46 2au3_A DNA primase; zinc ribbo 40.5 61 0.0021 23.4 5.4 34 7-45 288-321 (407)
47 1wwj_A Circadian clock protein 37.7 61 0.0021 18.9 4.8 50 1-52 1-52 (105)
48 1zun_A Sulfate adenylyltransfe 33.7 47 0.0016 23.2 3.8 40 6-50 46-85 (325)
49 1dd9_A DNA primase, DNAG; topr 31.6 98 0.0034 21.8 5.2 25 6-30 206-230 (338)
50 4dnp_A DAD2; alpha/beta hydrol 30.4 1E+02 0.0034 19.2 5.3 19 105-123 201-219 (269)
51 3ouz_A Biotin carboxylase; str 30.4 41 0.0014 24.2 3.1 38 2-49 2-39 (446)
52 2uxq_A Isocitrate dehydrogenas 30.1 1.6E+02 0.0054 21.4 7.6 82 17-118 184-266 (402)
53 1x92_A APC5045, phosphoheptose 29.4 78 0.0027 19.8 4.1 38 5-48 112-149 (199)
54 3s2u_A UDP-N-acetylglucosamine 28.9 1.2E+02 0.0041 21.1 5.3 36 5-46 1-37 (365)
55 3g40_A Na-K-CL cotransporter; 28.1 1.1E+02 0.0036 21.4 4.7 37 8-50 22-58 (294)
56 2q5c_A NTRC family transcripti 27.0 30 0.001 22.3 1.7 21 101-121 59-79 (196)
57 2gx8_A NIF3-related protein; s 26.3 57 0.002 23.7 3.2 31 5-47 63-93 (397)
58 2dzd_A Pyruvate carboxylase; b 25.7 59 0.002 23.5 3.3 39 1-49 1-39 (461)
59 3p0r_A Azoreductase; structura 25.4 1.1E+02 0.0039 19.5 4.3 41 6-50 4-50 (211)
60 2nyd_A UPF0135 protein SA1388; 25.1 50 0.0017 23.8 2.7 31 5-47 39-69 (370)
61 3pmg_A Alpha-D-glucose-1,6-bis 24.7 89 0.003 23.7 4.1 35 6-45 53-87 (561)
62 4aoy_A Isocitrate dehydrogenas 24.7 2E+02 0.007 20.9 6.5 83 17-119 185-268 (402)
63 1wqa_A Phospho-sugar mutase; a 24.6 1.1E+02 0.0037 22.3 4.5 40 7-51 42-81 (455)
64 3udu_A 3-isopropylmalate dehyd 24.6 94 0.0032 22.3 4.0 26 17-47 167-192 (361)
65 1lwd_A Isocitrate dehydrogenas 24.3 2.1E+02 0.0072 20.9 7.6 82 17-118 187-269 (413)
66 1nui_A DNA primase/helicase; z 24.3 73 0.0025 21.1 3.3 26 6-31 199-224 (255)
67 1b35_D CRPV, protein (cricket 24.1 15 0.00052 18.4 -0.1 18 99-116 17-34 (57)
68 2yva_A DNAA initiator-associat 24.1 1.1E+02 0.0038 19.0 4.1 38 5-48 108-145 (196)
69 2gkg_A Response regulator homo 24.1 96 0.0033 16.9 3.5 25 3-28 2-26 (127)
70 3vmk_A 3-isopropylmalate dehyd 23.2 1E+02 0.0035 22.2 4.0 27 17-48 179-205 (375)
71 2l69_A Rossmann 2X3 fold prote 22.5 72 0.0025 18.3 2.5 23 9-31 54-76 (134)
72 2hy5_B Intracellular sulfur ox 22.4 1.3E+02 0.0046 17.9 5.7 38 6-49 5-46 (136)
73 2pju_A Propionate catabolism o 22.2 41 0.0014 22.3 1.7 21 101-121 71-91 (225)
74 1cnz_A IPMDH, IMDH, protein (3 22.0 1.1E+02 0.0039 21.9 4.0 28 17-49 170-197 (363)
75 2hl0_A Threonyl-tRNA synthetas 22.0 1.5E+02 0.0051 18.3 5.1 65 18-103 56-120 (143)
76 1w0d_A 3-isopropylmalate dehyd 22.0 1.1E+02 0.0039 21.6 4.0 28 17-49 154-181 (337)
77 3u1h_A 3-isopropylmalate dehyd 21.6 1.2E+02 0.004 22.1 4.0 28 17-49 186-213 (390)
78 2oq2_A Phosphoadenosine phosph 21.4 1.7E+02 0.0058 19.5 4.7 39 6-50 41-79 (261)
79 1wpw_A 3-isopropylmalate dehyd 21.0 1.2E+02 0.0042 21.4 4.0 28 17-49 144-171 (336)
80 3bl5_A Queuosine biosynthesis 20.9 1.7E+02 0.0057 18.4 5.5 36 6-50 3-38 (219)
81 4axs_A Carbamate kinase; oxido 20.7 1.2E+02 0.0041 21.4 3.9 41 5-50 23-72 (332)
82 3pdk_A Phosphoglucosamine muta 20.7 1.5E+02 0.005 21.9 4.5 41 6-51 61-101 (469)
83 1p5d_X PMM, phosphomannomutase 20.6 1.5E+02 0.0051 21.7 4.6 40 7-51 49-88 (463)
84 1a05_A IPMDH, IMDH, 3-isopropy 20.6 1.3E+02 0.0043 21.6 4.0 28 17-49 165-192 (358)
85 3us8_A Isocitrate dehydrogenas 20.6 2.6E+02 0.0088 20.5 7.6 82 17-118 208-290 (427)
86 4hjh_A Phosphomannomutase; str 20.2 1.5E+02 0.005 21.9 4.5 41 6-51 49-89 (481)
87 2qfy_A Isocitrate dehydrogenas 20.1 2.6E+02 0.009 20.5 6.7 75 17-111 203-278 (427)
88 2y3z_A 3-isopropylmalate dehyd 20.0 1.3E+02 0.0045 21.5 4.0 28 17-49 163-190 (359)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.86 E-value=2.6e-21 Score=122.84 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=81.5
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
.+|+++||||+|+|+.+.+|++||+.+|+.. + + +|+++||++......... ........+...+..++.++
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~-~--a--~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~ 72 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRH-Q--A--NLTALYVVDDSAYHTPAL----DPVLSELLDAEAAHAKDAMR 72 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEEEECCCCCCGGG----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEecCcccccccc----ccccHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999997 7 7 999999998764332110 00223334444555666666
Q ss_pred HHHHHhhhcCc-c------------------------------------cceeeeCcchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKSV-M------------------------------------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~~-~------------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...++ . +.++++||++++|+++++||||+||
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 66655554443 2 6778999999999999999999997
No 2
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.86 E-value=1.5e-21 Score=123.91 Aligned_cols=109 Identities=25% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEA 84 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (125)
||++||||+|+|+.+.+|++||+.+++.. + + +|+++||++....+............+...+..++..++.++.+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLT-G--A--ELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHH-C--C--EEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999997 7 7 99999999875422211111111111222333334445555555
Q ss_pred HHHhhhcCc-----c---------------------------------cceeeeCcchHHHhccCCccEEEE
Q 033189 85 KEICSSKSV-----M---------------------------------ISLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 85 ~~~~~~~~~-----~---------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
.+.+...++ . +.++++||++++|+++++||||+|
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 444433321 1 678899999999999999999986
No 3
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.86 E-value=7.3e-21 Score=121.32 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=70.1
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccc-ccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVI-GLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
+++++||||+|+|+.+.+|++||+.+++.. + + +|+++||++...... .+.... ....+...+...+.+++.++
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 77 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQI-G--A--RLSLIHVLDNIPMPDTPYGTAI-PLDTETTYDAMLDVEKQKLS 77 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHH-T--C--EEEEEEEEC--------CTTCC-CSSSCCCHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhc-C--C--EEEEEEEEcCcccccccccccc-CcCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999997 7 7 999999998754210 111100 01112222333333444444
Q ss_pred HHHHHhhhc----------------------Ccc-----------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 83 EAKEICSSK----------------------SVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 83 ~~~~~~~~~----------------------~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
.+.+.+... +.+ +. +++||++++|+++++||||+||.++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 78 QIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp HHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC
T ss_pred HHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCC
Confidence 333222111 111 56 8899999999999999999999875
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.85 E-value=5.6e-21 Score=123.38 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC----cccccCCCC--C-ccc---chhHH
Q 033189 1 MATAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS----AVIGLAGHG--A-VEV---LPHVD 70 (125)
Q Consensus 1 m~~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~----~~~~~~~~~--~-~~~---~~~~~ 70 (125)
|.. ++++||||+|+|+.+.+|++||+.+++.. + + +|+++||+++.. .+..+.... . ... .+.+.
T Consensus 1 M~~-~~~~ILv~vD~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 1 MSV-MYKKILYPTDFSETAEIALKHVKAFKTLK-A--E--EVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp --C-CCCEEEEECCSCHHHHHHHHHHHHTCCSS-C--C--EEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred Ccc-ccceEEEEeCCCHHHHHHHHHHHHHHhhc-C--C--eEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 543 79999999999999999999999999987 7 7 999999998541 110110000 0 110 12334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcc-----------------------------------cceeeeCcchHHHhccCCccE
Q 033189 71 SDLKKIAARLVEEAKEICSSKSVM-----------------------------------ISLAVLGSVSDYCAHHAHCTV 115 (125)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------------~~~~~~Gs~s~~vl~~a~~pV 115 (125)
+...+..++.++++.+.+...++. +.++++||++++|+++++|||
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pV 154 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPV 154 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCE
Confidence 444555666666665555444322 678899999999999999999
Q ss_pred EEEcCC
Q 033189 116 MIVKRP 121 (125)
Q Consensus 116 lvV~~~ 121 (125)
|+||.+
T Consensus 155 lvv~~~ 160 (162)
T 1mjh_A 155 LVVKRK 160 (162)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999975
No 5
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.83 E-value=6e-20 Score=118.36 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCCCCeEEEEeCC-ChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDD-SEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV 81 (125)
Q Consensus 3 ~~~~~~IlvavD~-s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (125)
.|+|++||||+|+ |+.+.+|+++|+.+|+.. + + +|+++||++..... .+. ..+..++.+
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~-~--a--~l~llhV~~~~~~~-----------~~~----~~~~~~~~l 80 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLR-G--V--PVYVVHSLPGGGRT-----------KDE----DIIEAKETL 80 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHH-T--C--CEEEEEEECCSTTS-----------CHH----HHHHHHHHH
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEEcCCCcc-----------cHH----HHHHHHHHH
Confidence 4789999999999 999999999999999997 7 7 99999999854211 111 222233344
Q ss_pred HHHHHHhhhcCcc-------------------------------------cceeeeCcchHHHhccCCccEEEEc
Q 033189 82 EEAKEICSSKSVM-------------------------------------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 82 ~~~~~~~~~~~~~-------------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+.+.+.+...++. +.++++||++++|+++++||||+||
T Consensus 81 ~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 81 SWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 4433333322211 7788999999999999999999996
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.83 E-value=9.6e-20 Score=118.45 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccccc-CCC---CC-cccchhHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL-AGH---GA-VEVLPHVDSDLKKIAA 78 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~-~~~---~~-~~~~~~~~~~~~~~~~ 78 (125)
+++++||||+|+|+.+.+|++||+.+|+.. + + +|+++||++........ ... .. ....+.+.+...+..+
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKME-V--G--EVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEAS 77 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSC-C--S--EEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHH
Confidence 479999999999999999999999999987 7 7 99999999764321110 000 00 0011122233333444
Q ss_pred HHHHHHHHHhhhcCc------c-------------------------------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 79 RLVEEAKEICSSKSV------M-------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 79 ~~l~~~~~~~~~~~~------~-------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
+.++.+.+.+...++ . +.++++||++++|+++++||||+||..
T Consensus 78 ~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 78 RKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccC
Confidence 444444333322111 0 667899999999999999999999976
Q ss_pred CC
Q 033189 122 KT 123 (125)
Q Consensus 122 ~~ 123 (125)
.+
T Consensus 158 ~~ 159 (170)
T 2dum_A 158 DE 159 (170)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 7
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.82 E-value=5.9e-20 Score=115.59 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHh-hhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHH-HHHHHHHHH
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHF-FANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLK-KIAARLVEE 83 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la-~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 83 (125)
+++||||+|+|+.+..|++||+.++ +.. + + +|+++||++......... .......+..+ +..++.+++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~-~--a--~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDA-D--C--TLTLIHVKPEFMLYGEAV-----LAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCT-T--E--EEEEEEEECCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCC-C--C--EEEEEEEecCCCcccccc-----cCcHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 876 6 7 999999998765332110 01112233344 556666666
Q ss_pred HHHHhhhcCcc---------------------------------cceeeeCcchHHHhccCCccEEEEc
Q 033189 84 AKEICSSKSVM---------------------------------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 84 ~~~~~~~~~~~---------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+.+.+...++. +.+++ ||++++|+++++||||+||
T Consensus 71 ~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 66665544432 67778 9999999999999999997
No 8
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.81 E-value=3.3e-19 Score=114.46 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeC--CChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGID--DSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARL 80 (125)
Q Consensus 3 ~~~~~~IlvavD--~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
.++|++||||+| +|+.+.+|++||+.+++.. + + +|+++||++...... +.. ......+...+..++.
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 80 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDY-D--V--PLGICSVLESEDINI-FDS-----LTPSKIQAKRKHVEDV 80 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHH-T--C--CEEEEEEECCCCTTC-CCS-----SHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEEeCCCccc-ccc-----CCHHHHHHHHHHHHHH
Confidence 467999999999 9999999999999999997 7 7 999999998754321 111 1122333344444455
Q ss_pred HHHHHHHhhhcCc---------------------------c-----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 81 VEEAKEICSSKSV---------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 81 l~~~~~~~~~~~~---------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
++.+.+.+.+.++ + +. .++||++++|+++++||||+||
T Consensus 81 l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 81 VAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 5544333322221 1 44 4899999999999999999997
No 9
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.80 E-value=3.5e-19 Score=112.07 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEA 84 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (125)
|+++||||+|+|+.+.+|++||+.+++.. + + +|+++||.++... .+......+ +.+..++..++.++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~--~~~~~~~~~----~~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAH-G--A--RLIVVHAYEPVPD--YLGEPFFEE----ALRRRLERAEGVLEEA 69 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEEECC--------------------CHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhc-C--C--EEEEEEEecCCCc--cccccchHH----HHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999997 7 7 9999999985321 111000011 1122222333344333
Q ss_pred HHHh----------------------hhcCcc-----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 85 KEIC----------------------SSKSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 85 ~~~~----------------------~~~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.. .+.+.+ +.++++||++++|+++++||||+||
T Consensus 70 ~~~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 70 RALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 3220 000111 6678999999999999999999997
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.79 E-value=1.8e-19 Score=117.05 Aligned_cols=109 Identities=22% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE--EEecCCCcccccCCCCCcccchhHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV--HARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARL 80 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll--hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
..++++||||+|+|+.+.+|++||+.+|+ . + + +|+++ ||.+.......... ... .+.+...+..++.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~-~--a--~l~ll~a~v~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A-D--A--KLIIASAYLPQHEDARAADIL-KDE----SYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-T-T--S--EEEEEEECCC-------------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-C-C--C--EEEEEEeeeccCccccccccc-ccH----HHHHHHHHHHHHH
Confidence 35689999999999999999999999999 7 8 7 99999 87765432111110 001 1111111222333
Q ss_pred HHHHHHHhhhcCc-------------------------c-----------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 81 VEEAKEICSSKSV-------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 81 l~~~~~~~~~~~~-------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
++.+.+.+...++ + +.++++||++++|+++++||||+||.+.
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 3333332222111 1 6678999999999999999999999864
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.78 E-value=3.5e-19 Score=112.56 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCeEEEEeCCChH--HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 6 TQTMVVGIDDSEH--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 6 ~~~IlvavD~s~~--s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
.|+||||+|+|+. +.+|++||+.+++.. + + +|+++||++....+....... ....+.. ++..++.++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~ 70 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARID-D--A--EVHFLTVIPSLPYYASLGMAY-TAELPGM----DELREGSETQ 70 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHH-T--C--EEEEEEEECC-----------------CH----HHHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhc-C--C--eEEEEEEecCCcccccccccc-cchhhhH----HHHHHHHHHH
Confidence 3799999999999 999999999999997 7 7 999999998765332211111 0111111 1222223333
Q ss_pred HHHHhhhcCc---------------------------c----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 84 AKEICSSKSV---------------------------M----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 84 ~~~~~~~~~~---------------------------~----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+++.+.+.++ + +.++++||++++|+++++||||+||
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 3333332221 0 6778999999999999999999997
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.77 E-value=1.3e-18 Score=113.72 Aligned_cols=113 Identities=23% Similarity=0.405 Sum_probs=64.2
Q ss_pred CCCCeEEEEeCCCh---------HHHHHHHHHHHHh-hh--cCCCCCCcEEEEEEEecCCCc-ccccCC-CCCcccchhH
Q 033189 4 AETQTMVVGIDDSE---------HSTYALQWTLDHF-FA--NSTVNPPFKLVIVHARPSPSA-VIGLAG-HGAVEVLPHV 69 (125)
Q Consensus 4 ~~~~~IlvavD~s~---------~s~~a~~~a~~la-~~--~~~~~~~~~l~llhv~~~~~~-~~~~~~-~~~~~~~~~~ 69 (125)
..+++||||+|+|+ .+.+|++||+.++ +. . + + +|+++||++.... +..... .......+.+
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTS-D--F--KILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTT-S--E--EEEEEEEEC----------CCCCSHHHHHHH
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCC-C--C--EEEEEEEeecccccccccccccCCHHHHHHH
Confidence 46899999999999 9999999999987 43 3 5 6 9999999865321 111000 0001111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcc-----------------------------------cceeeeCcchHHHhccCCcc
Q 033189 70 DSDLKKIAARLVEEAKEICSSKSVM-----------------------------------ISLAVLGSVSDYCAHHAHCT 114 (125)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------------~~~~~~Gs~s~~vl~~a~~p 114 (125)
.+...+..++.++.+.+.+...++. +.++++||++++|+++++||
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCC
Confidence 1122233344454444443332221 66889999999999999999
Q ss_pred EEEEcCC
Q 033189 115 VMIVKRP 121 (125)
Q Consensus 115 VlvV~~~ 121 (125)
||+||.+
T Consensus 158 Vlvv~~~ 164 (175)
T 2gm3_A 158 VMTIKRN 164 (175)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 9999975
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.74 E-value=1.2e-17 Score=118.05 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=78.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
+++++||||+|+|+.+..|++||+.+|+.. + + +|+++||.+..+... .. .......+.+.+...+.+++.++.
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRN-G--G--RIKAFLPVYDLSYDM-TT-LLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHH-C--C--EEEEEEEECCGGGGC-TT-TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHc-C--C--eEEEEEEecccchhh-cc-ccChhhHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999997 7 7 999999987533211 11 111112223333333444555555
Q ss_pred HHHHhhhcCcc------------------------------------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 84 AKEICSSKSVM------------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 84 ~~~~~~~~~~~------------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
+.+.+...++. +.++++||++++|+++++||||+||...
T Consensus 78 ~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred HHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 54444333321 6678899999999999999999999753
No 14
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.72 E-value=6.5e-17 Score=114.06 Aligned_cols=109 Identities=26% Similarity=0.334 Sum_probs=76.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
.++++||||+|+|+.+..|++||+.+|+.. + + +|+++||+++... .+.... ......+...+..++.+++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELR-K--I--PLTLVHAVSPEVA--TWLEVP---LPPGVLRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHH-T--C--CEEEEEECCCCCC--CTTCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhc-C--C--cEEEEEEecCccc--ccccCC---CCchhhHHHHHHHHHHHHH
Confidence 468999999999999999999999999997 7 7 9999999874321 111111 1112233334444555555
Q ss_pred HHHHhhhc-----Ccc---------------------------------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 84 AKEICSSK-----SVM---------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 84 ~~~~~~~~-----~~~---------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
+.+.+... ++. +.++++||++++|+++++||||+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 163 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDED 163 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTC
T ss_pred HHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhcCCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCc
Confidence 54444332 321 5678999999999999999999999764
No 15
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.72 E-value=8.4e-18 Score=106.00 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=38.2
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
||++||||+|+|+.+.+|++||..+++.. + + +|+++||.+.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~ 41 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRH-D--A--KLSIIHVDVN 41 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHH-T--C--EEEEEEEEEC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhc-C--C--EEEEEEEecC
Confidence 68999999999999999999999999997 7 7 9999999854
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1e-17 Score=117.38 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
+|+++||||+|+|+.+..|++||+.+|+.. + + +|+++||++.......... ...+.+.+..++..++.++.
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ 90 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVG-V--E--EIGVLFVINLTKLSTVSGG----IDIDHYIDEMSEKAEEVLPE 90 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTT-C--C--EEEEECCEECTTC-----C----CCTTHHHHHHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhc-C--C--EEEEEEEecCccccccccc----ccHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999997 7 7 9999999987653311111 11233334444455555555
Q ss_pred HHHHhhhcCcc-----------------------------------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 84 AKEICSSKSVM-----------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 84 ~~~~~~~~~~~-----------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
+.+.+...++. +.++++||++++++++++||||+||...
T Consensus 91 ~~~~~~~~g~~~~~~~v~~~g~~~~~I~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 91 VAQKIEAAGIKAEVIKPFPAGDPVVEIIKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHHTTCEEEECSSCCEECHHHHHHHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred HHHHHHHcCCCcceeEeeccCChhHheeeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 54444322210 5667899999999999999999999864
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.68 E-value=7.7e-17 Score=111.40 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=73.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccc-c-cCCCCCcccchhH----HHHHHHHHHHH
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVI-G-LAGHGAVEVLPHV----DSDLKKIAARL 80 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~ 80 (125)
|+||||+|+|+.+..|++||+.+|+.. + + +|+++||++...... + .......+....+ .+...+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL-S--A--PLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH-T--C--CEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh-C--C--cEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999997 7 7 999999987543110 0 0000000111011 23334455566
Q ss_pred HHHHHHHhhhcCcc----------------------------------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 81 VEEAKEICSSKSVM----------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 81 l~~~~~~~~~~~~~----------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
++.+.+.+...++. +.++++||++++|+++++||||+||..
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~ 150 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGVPHEAILRRARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGE 150 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECHHHHHHHHHTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSS
T ss_pred HHHHHHHHHhCCCCeEEEEecCCHHHHHHhhccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCC
Confidence 66665555443321 334689999999999999999999975
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.67 E-value=5.7e-16 Score=108.34 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=69.5
Q ss_pred CCCeEEEEeCCChH-------HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEH-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIA 77 (125)
Q Consensus 5 ~~~~IlvavD~s~~-------s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
.+++||||+|+|+. +.+|+++|..+++.. + + +|+++||++....... . .+. .+.+...+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~~--~---~~~--~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA-K--A--TLHVISAHPSPMLSSA--D---PTF--QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT-T--C--EEEEEEEEC--------------CH--HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc-C--C--eEEEEEEecCcccccc--C---chh--HHHHHHHHHH
Confidence 57999999999998 999999999999997 7 7 9999999987543211 1 111 2222222223
Q ss_pred HHHHHHHHHHhhh----------------------cCcc-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 78 ARLVEEAKEICSS----------------------KSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 78 ~~~l~~~~~~~~~----------------------~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
++.++.+.+.+.- .+.+ +.++++||++++|+++++||||+||++
T Consensus 201 ~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 201 REACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred HHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 3333332222110 0011 778999999999999999999999974
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.66 E-value=1.8e-16 Score=99.62 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=69.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe-cC-C--CcccccCCCCCcccchhHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PS-P--SAVIGLAGHGAVEVLPHVDSDLKKIAAR 79 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (125)
.++++||||+|+|+.+.+|++||+.+++.. + + +|+++||+ +. + ..+........ +.+.+...+..++
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 72 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKL-G--A--ELDILAVLEDVYNLERANVTFGLPFP----PEIKEESKKRIER 72 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTT-C--C--EEEEEEECHHHHHHHHHHHHHCCCCC----THHHHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHc-C--C--eEEEEEEecccccccccccccCCCCC----hHHHHHHHHHHHH
Confidence 578999999999999999999999999986 7 7 99999998 63 1 11110000100 2233334444455
Q ss_pred HHHHHHHHh--hhcC-cc--------------------cceeeeC----cchHHHhccCCccEEEEc
Q 033189 80 LVEEAKEIC--SSKS-VM--------------------ISLAVLG----SVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 80 ~l~~~~~~~--~~~~-~~--------------------~~~~~~G----s~s~~vl~~a~~pVlvV~ 119 (125)
.++++ +.+ ...+ +. ..-.++| |++++|+++++||||+||
T Consensus 73 ~l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 73 RLREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCGGGTHHHHHHSSSEEEECC
T ss_pred HHHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHhCCCceEeeC
Confidence 55555 442 2222 11 2223334 899999999999999997
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.65 E-value=1.3e-15 Score=107.38 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEA 84 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (125)
.+++||||+|+|+.+.+|+++|..+++.. + + +|+++||+++.... ... . ...+...+..++..++.++.+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~-~~~--~--~~~~~~~~~~~~~l~~~~~~~ 239 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRR-N--V--DLVALHAWSDVDVS-EWP--G--IDWPATQSMAEQVLAERLAGW 239 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHT-T--C--CEEEEEESCSSCCT-TCS--S--CCHHHHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhc-C--C--EEEEEEEeeccccc-CCC--c--ccHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999987 7 7 99999998764321 110 0 111222223333333333333
Q ss_pred HHHhhhcC--------------------cc-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 85 KEICSSKS--------------------VM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 85 ~~~~~~~~--------------------~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
.+.+.... .+ +.++++||++++|+++++||||+||.+
T Consensus 240 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 240 QERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHCTTSCEEEEEESSCHHHHHHHHHTTCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HhhCCCCcEEEEEEcCCHHHHHHHhhCCCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 22111111 11 778899999999999999999999975
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.63 E-value=2.7e-16 Score=109.97 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHH---------
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLK--------- 74 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (125)
+++++||||+|+|+.+..|++||+.+|+.. + + +|+++|+.++.. ..+..+...+...
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~-~--a--~l~ll~v~~~~~---------~~~~l~~~~~~~~~~~~~~~~~ 70 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVT-Q--S--HLHLLVCEKRRD---------HSAALNDLAQELREEGYSVSTN 70 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHH-C--C--EEEEEEECSSSC---------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhc-C--C--eEEEEEeeCcHH---------HHHHHHHHHHHHhhCCCeEEEE
Confidence 368999999999999999999999999997 7 7 999999987300 0001111111100
Q ss_pred -----HHHHHHHHHHHHHhhhc---Cc----ccceeeeCcchHHHhccCCccEEEEcCC
Q 033189 75 -----KIAARLVEEAKEICSSK---SV----MISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 75 -----~~~~~~l~~~~~~~~~~---~~----~~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
...+.+.+.+++...+. |. .+.++++||++++++++++||||+||..
T Consensus 71 ~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 71 QAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp EECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred EEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 01112222222211111 00 0677899999999999999999999953
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.62 E-value=3.5e-15 Score=105.27 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=74.8
Q ss_pred CCCeEEEEeCCCh-------HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSE-------HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIA 77 (125)
Q Consensus 5 ~~~~IlvavD~s~-------~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
.+++||||+|+|+ .+.+|+++|..+++.. .+++ +|+++||++..........+ ....+.+.++..+..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-~~~a--~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 229 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRI-QKDP--DVHLLSAYPVAPINIAIELP--DFDPNLYNNALRGQH 229 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHH-CSSC--CEEEEEEECCCSCSCCTTCT--TCCHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhc-cCCC--eEEEEEeecCcchhhhccCC--cccHHHHHHHHHHHH
Confidence 5799999999999 6799999999999984 2126 99999999876533211111 111122333333344
Q ss_pred HHHHHHHHHHhhhc----------------------Ccc-----------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 78 ARLVEEAKEICSSK----------------------SVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 78 ~~~l~~~~~~~~~~----------------------~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
.+.++.+.+.+... +.+ +.++++||++++|+++++||||+||++.
T Consensus 230 ~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 230 LIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 44443333222110 000 6778999999999999999999999864
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.9e-15 Score=105.81 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHH---------
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLK--------- 74 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (125)
..+++||+|+|+|+.+.+++++|..+++.. + + +|+++||.+.... ....+.+.+..+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~-~--~--~l~ll~v~~~~~~---------~~~l~~~~~~l~~~~~~~~~~ 233 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT-G--G--ELHIIHVSEDGDK---------TADLRVMEEVIGAEGIEVHVH 233 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEECSSSCC---------HHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc-C--C--EEEEEEEccCchH---------HHHHHHHHHHHHHcCCcEEEE
Confidence 467999999999999999999999999987 7 7 9999999876430 000111111110
Q ss_pred ----HHHHHHHHHHHHHhhhc---Cc----ccceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 75 ----KIAARLVEEAKEICSSK---SV----MISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 75 ----~~~~~~l~~~~~~~~~~---~~----~~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
...+.+++.+++.-.+. |. .+.++++||++++|+++++||||+||++.+
T Consensus 234 ~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 234 IESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp EECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred EecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCCC
Confidence 11222222222211111 00 067889999999999999999999998764
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.55 E-value=2.8e-14 Score=98.47 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=64.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHH----------
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLK---------- 74 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 74 (125)
.+++||+|+|+|+.+.+++++|..+++.. + + +++++||+++.... .+..+.+.+...
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~-~--a--~l~ll~v~~~~~~~--------~~~l~~~~~~l~~~~~~~~~~~ 219 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL-G--L--GVRVVSVHEDPARA--------EAWALEAEAYLRDHGVEASALV 219 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH-T--C--CEEEEEECSSHHHH--------HHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC-C--C--EEEEEEEcCcHHHH--------HHHHHHHHHHHHHcCCceEEEE
Confidence 46899999999999999999999999987 7 7 99999998752100 000000000000
Q ss_pred ---HHHHHHHHHHHHHhhhc---CcccceeeeCcchHHHhccCCccEEEEc
Q 033189 75 ---KIAARLVEEAKEICSSK---SVMISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 75 ---~~~~~~l~~~~~~~~~~---~~~~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
...+.+++.+++. +. |..+.++++||++++|+++++||||+||
T Consensus 220 ~~g~~~~~i~~~a~~~--dliV~G~~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 220 LGGDAADHLLRLQGPG--DLLALGAPVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp ECSCHHHHHHHHCCTT--EEEEEECCCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred eCCChHHHHHHHHHhC--CEEEECCcccccEeccHHHHHHhcCCCCEEEeC
Confidence 0111111111111 10 0026788999999999999999999997
No 25
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=83.67 E-value=2.6 Score=27.89 Aligned_cols=35 Identities=6% Similarity=0.115 Sum_probs=28.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|+|+++|-|+-.+..+++..-.+.+. | . +++++-.
T Consensus 5 k~IllgvTGaiaa~k~~~ll~~L~~~--g--~--eV~vv~T 39 (209)
T 3zqu_A 5 ERITLAMTGASGAQYGLRLLDCLVQE--E--R--EVHFLIS 39 (209)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHT--T--C--EEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 89999999999999988887777664 5 6 8777655
No 26
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=82.30 E-value=1.6 Score=28.25 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=29.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|++||++++-|+..+..+.+..-.+.+. | . +++++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~--g--~--~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH--F--D--EVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT--S--S--CEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC--C--C--EEEEEEc
Confidence 5688999999999888888887777554 4 5 7777654
No 27
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=78.54 E-value=3.2 Score=26.65 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|.++|++++-|+..+..+++..-.+.+. | . +++++-.
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~~--g--~--~V~vv~T 40 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKSK--F--D--EVNVIAS 40 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTTT--C--S--EEEEEEC
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 4589999999999888888776666554 5 6 7776654
No 28
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=71.75 E-value=9.7 Score=24.66 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=27.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
++|++++-|+..+..+.+..-.+.+. | . +++++-.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~--g--~--~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL--D--F--SVDLVIS 36 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT--T--C--EEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 78999999998888888877777554 5 6 8877754
No 29
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=70.77 E-value=12 Score=27.40 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhh-cCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFA-NSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~-~~~~~~~~~l~llhv~~~ 50 (125)
.++|+|++.|...|...+.....+.+. . + - ++..+||-..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~-g--~--~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENP-G--V--ALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTST-T--C--EEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcC-C--C--eEEEEEEECC
Confidence 578999999999999888888777665 4 5 5 9999999643
No 30
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=69.76 E-value=8.9 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=33.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
.++|+|++.|...|..++.....+.+.. + . ++..+|+-...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-~--~--~v~avhvdhgl 58 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEW-K--L--QVIAAHVDHMF 58 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTT-T--C--BCEEEEEECTT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHc-C--C--eEEEEEEECCC
Confidence 4689999999999999888887777665 6 6 89999996543
No 31
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=67.84 E-value=10 Score=24.75 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=28.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
+||+++|-||-.+..+++..-.+.+.. | . +++++-.
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~-g--~--~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMP-N--V--ETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCT-T--C--EEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhcc-C--C--EEEEEEC
Confidence 379999999998888888888887653 4 5 7777654
No 32
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=66.63 E-value=12 Score=26.01 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=31.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcE-EEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFK-LVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~-l~llhv~~~ 50 (125)
.++|+|++.|...|..++..+..+.+.. + . + +..+|+-..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~-g--~--~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYF-S--L--KEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTT-T--C--SEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHc-C--C--CEEEEEEEECC
Confidence 4689999999999998887777766554 5 5 7 999999654
No 33
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=66.06 E-value=8.7 Score=25.18 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCChHHH-HHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHST-YALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~-~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|+++|-|+-.+. .+++..-.+.+. | . +++++-.
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~--g--~--eV~vv~T 43 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVEL--G--A--KVTPFVT 43 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHT--T--C--EEEEECS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhC--C--C--EEEEEEC
Confidence 3579999999998777 788777777654 5 6 7766543
No 34
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=64.55 E-value=6.8 Score=25.53 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=28.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.++|++++-|+-.+..+.+..-.+.+ . | . +++++-.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~-g--~--~V~vv~T 43 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-F-F--K--EIRVVMT 43 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-T-S--S--EEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-C-C--C--EEEEEEc
Confidence 47899999999988888877777654 4 5 6 8877754
No 35
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=61.36 E-value=8.4 Score=25.36 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|+++|-|+-.+..+.+..-.+.+.. | . +++++-.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~~-g--~--~V~vv~T 55 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIP-G--L--EVAVVTT 55 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC----C--E--EEEEEEC
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhccc-C--C--EEEEEEC
Confidence 35789999999998888877777775524 4 5 7776644
No 36
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=56.48 E-value=14 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCChHHHH-HHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTY-ALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~-a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|+++|-||-.... +++..-.+.+. | . +++++-.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~--g--~--eV~vv~T 41 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAE--G--A--EVRPVVS 41 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHT--T--C--EEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhC--C--C--EEEEEEe
Confidence 35799999999976665 77666666554 5 6 8777654
No 37
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=45.34 E-value=31 Score=23.15 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
...++|++++|.++. +++ .|... + + .+.+.|=
T Consensus 33 ~~V~~I~~~lD~t~~---vi~----eAi~~-~--a--dlIitHH 64 (247)
T 1nmo_A 33 ETVQKIVTGVTASQA---LLD----EAVRL-G--A--DAVIVHH 64 (247)
T ss_dssp SBCCEEEEEEECCHH---HHH----HHHHT-T--C--SEEEEEE
T ss_pred CccCEEEEEEcCCHH---HHH----HHHhC-C--C--CEEEECC
Confidence 356899999999984 333 34444 5 6 8888886
No 38
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=43.97 E-value=25 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|++++|.++. +++ .|... + + .+.+.|=
T Consensus 35 ~V~~I~~alD~t~~---vi~----eAi~~-~--a--dlIitHH 65 (242)
T 2yyb_A 35 TVRKVGAAVDAGEA---IFR----KALEE-E--V--DFLIVHH 65 (242)
T ss_dssp BCCCEEEEEECSHH---HHH----HHHHT-T--C--SEEEEEE
T ss_pred ccCEEEEEEcCCHH---HHH----HHHHC-C--C--CEEEECC
Confidence 46899999999984 333 33444 5 6 8888885
No 39
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=42.95 E-value=35 Score=22.41 Aligned_cols=36 Identities=6% Similarity=-0.143 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|+++|-|+-.+..+++..-.+.+ . + +++++-.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~-~-g-----~V~vv~T 53 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE-W-A-----EVRAVVT 53 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT-T-S-----EEEEEEC
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc-C-C-----CEEEEEc
Confidence 357899999999988887777666644 3 2 6655543
No 40
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=42.81 E-value=42 Score=21.54 Aligned_cols=38 Identities=5% Similarity=-0.114 Sum_probs=26.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
|.+++|+|++.|...|.-++..+ ... + . ++..+|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll----~~~-g--~--~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVIL----KKL-G--Y--NPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHH----HHT-T--E--EEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHH----HHc-C--C--CeEEEEEeCC
Confidence 34578999999998887766443 334 5 5 8888888654
No 41
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=42.64 E-value=60 Score=20.25 Aligned_cols=39 Identities=8% Similarity=-0.118 Sum_probs=28.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
.+||+-+..+..++.+++..+.-+... + . ++.++++.+.
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~-g--~--~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEA-G--A--EVKIRRVRET 43 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHH-S--C--EEEEEECCCC
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhC-C--C--EEEEEehhHh
Confidence 367665555556788888888887776 6 6 8888887554
No 42
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=42.07 E-value=25 Score=23.89 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
...++|++++|.++. +++. |... + + .+.+.|=
T Consensus 36 ~~V~~I~~alD~t~~---vi~e----Ai~~-g--a--dlIitHH 67 (267)
T 2fyw_A 36 KGIQRVMVALDIREE---TVAE----AIEK-G--V--DLIIVKH 67 (267)
T ss_dssp SBCSEEEEESCCCHH---HHHH----HHHT-T--C--SEEEESS
T ss_pred CccCEEEEEEcCCHH---HHHH----HHHC-C--C--CEEEECC
Confidence 357899999999984 3333 3444 5 6 8888874
No 43
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=41.98 E-value=23 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.-++||+++|.++. .+..|.+. + + ++++-|=
T Consensus 37 eV~kIlvaLD~t~~-------vv~eA~~~-g--~--dlIItHH 67 (278)
T 3rxy_A 37 DLKRVMMGIDIGPA-------ELLLARQL-G--C--DGVIAHH 67 (278)
T ss_dssp CBSEEEEESSCCHH-------HHHHHHHT-T--C--SEEEESS
T ss_pred cccEEEEEECCCHH-------HHHHHHHc-C--C--CEEEECC
Confidence 56899999999984 45566666 6 7 8888885
No 44
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=40.91 E-value=42 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=28.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV 45 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll 45 (125)
++|+++.|+....+.|...++..+... + . .+.++
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~-g--~--~v~v~ 229 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQ-G--L--NVFVI 229 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHT-T--C--EEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhc-C--C--eEEEE
Confidence 689999999999999999999988876 6 5 65554
No 45
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=40.58 E-value=50 Score=21.64 Aligned_cols=40 Identities=15% Similarity=-0.067 Sum_probs=32.2
Q ss_pred CCeEEEEeCC-----ChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDD-----SEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~-----s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+++|||-++- .+.+..++..|.+++... | . +++.+-+-+.
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~-g--~--~v~av~~G~~ 47 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANEL-N--C--QLEAVVAGTG 47 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHH-T--C--CEEEEEEESC
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhc-C--C--eEEEEEECCC
Confidence 4679998884 467999999999999987 7 6 8888777554
No 46
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=40.46 E-value=61 Score=23.38 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=28.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV 45 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll 45 (125)
++|+++.|+....+.|...++..+... + . .+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~-g--~--~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSA-G--V--EVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHT-T--C--EEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhC-C--C--eEEEE
Confidence 789999999999999999988888776 6 5 66554
No 47
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=37.74 E-value=61 Score=18.94 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=33.4
Q ss_pred CCCCCCC-eEEEEeC-CChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 1 MATAETQ-TMVVGID-DSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 1 m~~~~~~-~IlvavD-~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
|+.++.+ ...+.|+ .++.|.+|++....+....++ .+.+|.++-+...+.
T Consensus 1 m~~~~~~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~--~~y~LeVIDv~~~Pe 52 (105)
T 1wwj_A 1 MSPFKKTYVLKLYVAGNTPNSVRALKMLKNILEQEFQ--GVYALKVIDVLKNPQ 52 (105)
T ss_dssp CCSSCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHT--TSEEEEEEETTTCCS
T ss_pred CCCccCceEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CCeEEEEEEcccCHh
Confidence 5543322 3557788 668899999998888766423 345788887766554
No 48
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=33.68 E-value=47 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+.+|+|++.|...|.-.+..+....... + . ++.++|+-..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~-~--~--~i~vv~vDtg 85 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG-K--L--PFPVMHVDTR 85 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS-C--C--SSCEEEECCS
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc-C--C--CEEEEEEECC
Confidence 5689999999999988888887776543 3 3 6778888543
No 49
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=31.63 E-value=98 Score=21.83 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHh
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHF 30 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la 30 (125)
.++|+++.|+....+.|...+...+
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~ 230 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETA 230 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999888873
No 50
>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A
Probab=30.42 E-value=1e+02 Score=19.23 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=13.8
Q ss_pred HHHhccCCccEEEEcCCCC
Q 033189 105 DYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 105 ~~vl~~a~~pVlvV~~~~~ 123 (125)
...+.+.+||+|++...++
T Consensus 201 ~~~~~~i~~P~l~i~g~~D 219 (269)
T 4dnp_A 201 RGVLGLVKVPCHIFQTARD 219 (269)
T ss_dssp GGGGGGCCSCEEEEEEESB
T ss_pred HhhhccccCCEEEEecCCC
Confidence 4456778999999876443
No 51
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=30.37 E-value=41 Score=24.24 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 2 ATAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 2 ~~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
|.||+++||| ++..+.+.+.++ -+++. | - ++++++..+
T Consensus 2 n~m~~~kiLI-~g~g~~a~~i~~----aa~~~-G--~--~~v~v~~~~ 39 (446)
T 3ouz_A 2 NAMEIKSILI-ANRGEIALRALR----TIKEM-G--K--KAICVYSEA 39 (446)
T ss_dssp CTTCCCEEEE-CCCHHHHHHHHH----HHHHT-T--C--EEEEEEEGG
T ss_pred CccccceEEE-ECCCHHHHHHHH----HHHHc-C--C--EEEEEEcCc
Confidence 5678999999 455554433333 33444 5 5 777776543
No 52
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=30.15 E-value=1.6e+02 Score=21.42 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH-HHHHHHhhhcCccc
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV-EEAKEICSSKSVMI 95 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 95 (125)
..+++.+++|..+|+.. . - +|+++|=..-...+ +..+++..+++. .++.+.+...++.+
T Consensus 184 ~~~eRiar~AFe~A~~r-~--~--kVt~v~KaNVlk~s---------------dglf~~~~~eva~~eypd~~~~~~I~~ 243 (402)
T 2uxq_A 184 ASIGHFARACFEYSLDQ-K--I--DCWFATKDTISKQY---------------DQRFKIIFEEIFAQEYKEKFAAAGIEY 243 (402)
T ss_dssp HHHHHHHHHHHHHHHHH-T--C--CEEEEECTTTSTTH---------------HHHHHHHHHHHHHHHTHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECCCcchhh---------------HHHHHHHHHHHHHHhCCCcccCCeEEE
Confidence 57899999999999987 5 4 78888764432211 112222333332 22333333346777
Q ss_pred ceeeeCcchHHHhccCCccEEEE
Q 033189 96 SLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 96 ~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
...++-..+.+++.+-.-=|++.
T Consensus 244 ~~~~vD~~~mqlv~~P~~fVivt 266 (402)
T 2uxq_A 244 FYTLIDDVVARMMKTEGGMLWAC 266 (402)
T ss_dssp EEEEHHHHHHHHTTCCCCSEEEE
T ss_pred EEEEHHHHHHHHccCCCceEEEE
Confidence 77777777777777654335544
No 53
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.44 E-value=78 Score=19.81 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
..+.+++++..|..+...++ +++.|+.. | + .+..+.-.
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~-g--~--~vI~IT~~ 149 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDR-E--M--LVVALTGR 149 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHT-T--C--EEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHC-C--C--EEEEEECC
Confidence 45679999999999988886 66788887 7 6 77766543
No 54
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=28.93 E-value=1.2e+02 Score=21.11 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=25.9
Q ss_pred CCCeEEEEeCCC-hHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 033189 5 ETQTMVVGIDDS-EHSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (125)
Q Consensus 5 ~~~~IlvavD~s-~~s~~a~~~a~~la~~~~~~~~~~~l~llh 46 (125)
|.+||+++-.|| .+-..|+..|-.+.++ | . +++++-
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~--g--~--~V~~vg 37 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQAR--G--Y--AVHWLG 37 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHT--T--C--EEEEEE
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhC--C--C--EEEEEE
Confidence 467899999998 5677788777777665 5 6 777654
No 55
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=28.12 E-value=1.1e+02 Score=21.43 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=31.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|||+++........++++..+.... | -+++.++.+.
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~~-G-----~ltv~~i~p~ 58 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYPK-G-----SVKLLGLAGN 58 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTT-C-----EEEEEECC--
T ss_pred cEEEecCCchhhhhHHHHHHHhccCc-e-----eEEEEEEccC
Confidence 69999988888889999999999987 5 8999999654
No 56
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.96 E-value=30 Score=22.29 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.6
Q ss_pred CcchHHHhccCCccEEEEcCC
Q 033189 101 GSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 101 Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
|+++..+-++.++||+-|+..
T Consensus 59 Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 59 GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp HHHHHHHHTTCSSCEEEECCC
T ss_pred ChHHHHHHHhCCCCEEEEcCC
Confidence 789999999999999998854
No 57
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=26.28 E-value=57 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|++++|.++. +++.|+ .. + + .+++.|=
T Consensus 63 ~V~~Vl~alD~t~~---Vv~eAi----~~-g--a--dlIItHH 93 (397)
T 2gx8_A 63 PVRHVLIALDVTEE---VVDEAI----QL-G--A--NVIIAHH 93 (397)
T ss_dssp BCCEEEEESSCCHH---HHHHHH----HH-T--C--CEEEESS
T ss_pred ccCEEEEEEcCCHH---HHHHHH----HC-C--C--CEEEECC
Confidence 46899999999983 444443 34 4 5 7888774
No 58
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=25.72 E-value=59 Score=23.49 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 1 MATAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 1 m~~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
|..+|+++|||. ..... +... ++-+++. | - +++++...+
T Consensus 1 m~~~~~k~ILI~-g~g~~---~~~i-~~a~~~~-G--~--~vv~v~~~~ 39 (461)
T 2dzd_A 1 METRRIRKVLVA-NRGEI---AIRV-FRACTEL-G--I--RTVAIYSKE 39 (461)
T ss_dssp --CCCCSEEEEC-SCHHH---HHHH-HHHHHHH-T--C--EEEEEECGG
T ss_pred CCCCcCcEEEEE-CCcHH---HHHH-HHHHHHc-C--C--EEEEEECCc
Confidence 888899999997 22222 2222 2233445 6 5 777776543
No 59
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=25.39 E-value=1.1e+02 Score=19.54 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=26.4
Q ss_pred CCeEEEEeCCChH------HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEH------STYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~------s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+.|||+ |.+|+. +...+++.+..++.. +++. ++.++.....
T Consensus 4 M~kiLi-I~gSpr~~~~S~s~~l~~~~~~~~~~~-~~g~--ev~~~dL~~~ 50 (211)
T 3p0r_A 4 MTKVLF-VKANNRPAEQAVSVKLYEAFLASYKEA-HPND--TVVELDLYKE 50 (211)
T ss_dssp CCEEEE-EECCCSCTTTCHHHHHHHHHHHHHHHH-CTTS--EEEEEEGGGS
T ss_pred cCEEEE-EEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCC--eEEEEECCCC
Confidence 345554 556654 677888888877653 2224 8888887654
No 60
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=25.13 E-value=50 Score=23.77 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=21.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|++++|.++. +++.|+ .. + + .+++.|=
T Consensus 39 ~V~~Vl~alD~t~~---Vv~eAi----~~-~--a--dlIItHH 69 (370)
T 2nyd_A 39 EVTGVLTALDCTLE---VVNEAI----EK-G--Y--NTIISHH 69 (370)
T ss_dssp BCCCEEEESSCCHH---HHHHHH----HH-T--C--CEEEESS
T ss_pred ccCEEEEEEcCCHH---HHHHHH----HC-C--C--CEEEECC
Confidence 46899999999983 444433 33 4 5 7777774
No 61
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=24.74 E-value=89 Score=23.67 Aligned_cols=35 Identities=26% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV 45 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll 45 (125)
.++|+|+-|.-..|+.+.+.++..+... | . +++++
T Consensus 53 g~~VvVG~D~R~~s~~~~~~~a~~l~a~-G--v--~V~~~ 87 (561)
T 3pmg_A 53 EATLVVGGDGRFYMKEAIQLIVRIAAAN-G--I--GRLVI 87 (561)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHHHT-T--C--CEEEE
T ss_pred CCEEEEEeCCCccHHHHHHHHHHHHHHC-C--C--EEEEe
Confidence 3579999999999999999999988887 7 6 88877
No 62
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=24.67 E-value=2e+02 Score=20.89 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH-HHHHHhhhcCccc
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE-EAKEICSSKSVMI 95 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 95 (125)
..+++.+++|..+|+.. + - +|+++|=..-.. ..+..+++..+++.+ ++.+.+...++.+
T Consensus 185 ~~~eRiar~AF~~A~~~-~--~--~vt~v~KaNilk---------------~tdglf~~~~~eva~~eyp~~~~~~~i~~ 244 (402)
T 4aoy_A 185 KSIRSFARACFNYALDM-N--Q--DLWFSTKDTISK---------------TYDHRFKDIFQEIYENEYKEKFEAKNLQY 244 (402)
T ss_dssp HHHHHHHHHHHHHHHHH-T--C--CEEEEECTTTSH---------------HHHHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECCccch---------------hhhhHHHHHHHHHHHHhCcccccCCCeEE
Confidence 67889999999999987 5 5 888887533211 111122222222222 2222223346666
Q ss_pred ceeeeCcchHHHhccCCccEEEEc
Q 033189 96 SLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 96 ~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
...++-..+.+++.+-.-=|++.+
T Consensus 245 ~~~~vD~~~~~lv~~P~~fVivt~ 268 (402)
T 4aoy_A 245 FYTLIDDAVARIIRSEGGMVWACK 268 (402)
T ss_dssp EEEEHHHHHHHHHTSCBCSEEECC
T ss_pred EEEEHHHHHHHHhhCCCCcEEEEC
Confidence 666666667777665432255443
No 63
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=24.60 E-value=1.1e+02 Score=22.34 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
++|+|+-|.-..|....+.++.-+... | . +++.+...+.|
T Consensus 42 ~~VvIG~D~R~ss~~l~~a~~~gl~~~-G--~--~V~~~g~~pTP 81 (455)
T 1wqa_A 42 PLVVVGRDTRVSGEMLKEALISGLLSV-G--C--DVIDVGIAPTP 81 (455)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHHHHHT-T--C--EEEEEEECCHH
T ss_pred CeEEEEeCCCcCHHHHHHHHHHHHHHc-C--C--eEEEeCCCChH
Confidence 469999999999998888888888777 7 7 99888766554
No 64
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=24.56 E-value=94 Score=22.33 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..+++.+++|..+|++. . - +|+++|=
T Consensus 167 ~~~eRIar~AFe~A~~r-r--k--kVT~v~K 192 (361)
T 3udu_A 167 KEIERIARIAFESARIR-K--K--KVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHT-T--S--EEEEEEC
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEEC
Confidence 46889999999999986 5 5 8888885
No 65
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=24.30 E-value=2.1e+02 Score=20.87 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH-HHHHHHhhhcCccc
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV-EEAKEICSSKSVMI 95 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 95 (125)
..+++.+++|..+|+.. . - +|+++|=..-...+ +..+++..+++. .++.+.+...++.+
T Consensus 187 ~~~eRiar~AFe~A~~r-~--~--kVt~v~KaNVlk~s---------------dglf~~~~~eva~~eypd~~~~~~I~~ 246 (413)
T 1lwd_A 187 ESISGFAHSCFQYAIQK-K--W--PLYMSTKNTILKAY---------------DGRFKDIFQEIFEKHYKTDFDKYKIWY 246 (413)
T ss_dssp HHHHHHHHHHHHHHHHH-T--C--CEEEEECTTTSTTH---------------HHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHh-C--C--ceEEEECCcchhhH---------------HHHHHHHHHHHHHHhCCCcccCCeEEE
Confidence 57889999999999987 5 4 78888764432211 112233333333 23333333346667
Q ss_pred ceeeeCcchHHHhccCCccEEEE
Q 033189 96 SLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 96 ~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
...++-..+.+++.+-.-=|++.
T Consensus 247 ~~~~VD~~~mqlv~~P~~FVivt 269 (413)
T 1lwd_A 247 EHRLIDDMVAQVLKSSGGFVWAC 269 (413)
T ss_dssp EEEEHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEHHHHHHHHhcCCCceEEEe
Confidence 77777777777777544334443
No 66
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.29 E-value=73 Score=21.14 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhh
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFF 31 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~ 31 (125)
+++|+++.|.....+.|...+...+.
T Consensus 199 ~~~iil~~D~D~aG~~aa~~~~~~l~ 224 (255)
T 1nui_A 199 FEQIILMFDMDEAGRKAVEEAAQVLP 224 (255)
T ss_dssp BSCEEEECCSSHHHHHHHHHHHHHSC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 57899999999999988888777664
No 67
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=24.13 E-value=15 Score=18.43 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.5
Q ss_pred eeCcchHHHhccCCccEE
Q 033189 99 VLGSVSDYCAHHAHCTVM 116 (125)
Q Consensus 99 ~~Gs~s~~vl~~a~~pVl 116 (125)
-+|-+++.+-.-+++|||
T Consensus 17 ~~gqiseglst~s~ipil 34 (57)
T 1b35_D 17 ALGQISEGLTTLSHIPVL 34 (57)
T ss_dssp SCCCCGGGCCCTTCCCCS
T ss_pred hhhhhhhhhhhhhccccc
Confidence 367888888888888886
No 68
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.09 E-value=1.1e+02 Score=18.95 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
..+.+++++..|..+...++ +++.|+.. | + ++..+.-.
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~-g--~--~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTR-D--M--TIVALTGY 145 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHT-T--C--EEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHC-C--C--EEEEEeCC
Confidence 35679999999999888875 55777877 7 6 77666543
No 69
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.08 E-value=96 Score=16.90 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=12.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLD 28 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~ 28 (125)
+||..+||+ +|.++.....+...+.
T Consensus 2 ~mm~~~ili-vdd~~~~~~~l~~~L~ 26 (127)
T 2gkg_A 2 SHMSKKILI-VESDTALSATLRSALE 26 (127)
T ss_dssp ----CEEEE-ECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEE-EeCCHHHHHHHHHHHH
Confidence 445557776 5666666666655544
No 70
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=23.20 E-value=1e+02 Score=22.24 Aligned_cols=27 Identities=7% Similarity=0.023 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
..+++.+++|..+|++. . - +|+++|=.
T Consensus 179 ~~~eRIar~AFe~A~~r-r--k--kVT~v~Ka 205 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGR-R--K--KVTSVDKA 205 (375)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECT
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECc
Confidence 46889999999999986 5 5 88888853
No 71
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.52 E-value=72 Score=18.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.3
Q ss_pred EEEEeCCChHHHHHHHHHHHHhh
Q 033189 9 MVVGIDDSEHSTYALQWTLDHFF 31 (125)
Q Consensus 9 IlvavD~s~~s~~a~~~a~~la~ 31 (125)
++|-+|..+.+..|+++...+..
T Consensus 54 vvvvvddkewaekairfvkslga 76 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSLGA 76 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEEEEccHHHHHHHHHHHHhcCC
Confidence 55777888888888777665543
No 72
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=22.36 E-value=1.3e+02 Score=17.94 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=26.6
Q ss_pred CCeEEEEeCCChH----HHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 6 TQTMVVGIDDSEH----STYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 6 ~~~IlvavD~s~~----s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
++++++-+..+|+ +..|++.|...+.. + . ++.++-.-+
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~--~--~--~v~Vff~~D 46 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAF--D--Q--DVCVLFLDD 46 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG--C--C--EEEEEECGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC--C--C--CEEEEEEhH
Confidence 4679988887774 57788888877765 3 4 666655543
No 73
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.22 E-value=41 Score=22.30 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.6
Q ss_pred CcchHHHhccCCccEEEEcCC
Q 033189 101 GSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 101 Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
|+++..+-.+.++||+-|+..
T Consensus 71 Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 71 GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHHHHTTCSSCEEEECCC
T ss_pred ChHHHHHHhhCCCCEEEecCC
Confidence 789999999999999998853
No 74
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=22.02 E-value=1.1e+02 Score=21.90 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 170 ~~~eRiar~AFe~A~~r-r--k--kVt~v~KaN 197 (363)
T 1cnz_A 170 FEIERIARIAFESARKR-R--R--KVTSIDKAN 197 (363)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhc-C--C--eEEEEECCc
Confidence 46889999999999986 5 4 888888643
No 75
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=21.97 E-value=1.5e+02 Score=18.32 Aligned_cols=65 Identities=12% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcCcccce
Q 033189 18 HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEICSSKSVMISL 97 (125)
Q Consensus 18 ~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (125)
-..+|++.....+.+. + + +-+++|-+.-.+..... + +.+.+++..+++.+...|..+.+
T Consensus 56 vv~~av~eI~~~a~kv-~--~--~~ivlYPyAHLSs~La~-----P-----------~~A~~iL~~le~~L~~~g~eV~r 114 (143)
T 2hl0_A 56 VSLKAIEEISKVAEQV-K--A--ENVFVYPFAHLSSELAK-----P-----------SVAMDILNRVYQGLKERGFNVGK 114 (143)
T ss_dssp HHHHHHHHHHHHHHHH-T--C--CEEEEEECGGGCSSBCC-----H-----------HHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhc-C--C--CEEEEeccccccCccCC-----h-----------HHHHHHHHHHHHHHHhCCCeEEE
Confidence 3568888888999997 7 7 88888876654322111 1 24455666666666666666555
Q ss_pred eeeCcc
Q 033189 98 AVLGSV 103 (125)
Q Consensus 98 ~~~Gs~ 103 (125)
.-||..
T Consensus 115 aPFGwy 120 (143)
T 2hl0_A 115 APFGYY 120 (143)
T ss_dssp CCSSEE
T ss_pred eCCccc
Confidence 555543
No 76
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=21.95 E-value=1.1e+02 Score=21.62 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 154 ~~~eRiar~AFe~A~~r-r--k--kVt~v~KaN 181 (337)
T 1w0d_A 154 FGVRRVVADAFERARRR-R--K--HLTLVHKTN 181 (337)
T ss_dssp HHHHHHHHHHHHHHHHT-T--S--EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHc-C--C--eEEEEECCc
Confidence 46889999999999987 5 4 888888633
No 77
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=21.57 E-value=1.2e+02 Score=22.12 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 186 ~~~eRIar~AFe~A~~r-r--k--kVT~v~KaN 213 (390)
T 3u1h_A 186 EEIERIIRKAFELALTR-K--K--KVTSVDKAN 213 (390)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECTT
T ss_pred HHHhHHHHHHHHHHHHc-C--C--ceEEEECCc
Confidence 46889999999999986 5 5 888888533
No 78
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=21.41 E-value=1.7e+02 Score=19.49 Aligned_cols=39 Identities=0% Similarity=-0.251 Sum_probs=28.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+.+|+|++.|...|.-.+..+....... . ++.++|+-..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~~----~--~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEKY----Y--MPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTTS----C--CCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCccC----C--CeeEEEecCC
Confidence 5689999999999988887776665432 3 6677887443
No 79
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=20.98 E-value=1.2e+02 Score=21.44 Aligned_cols=28 Identities=18% Similarity=0.091 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 144 ~~~eRiar~AF~~A~~r-r--k--kvt~v~KaN 171 (336)
T 1wpw_A 144 FASERIAKVGLNFALRR-R--K--KVTCVHKAN 171 (336)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHh-C--C--eEEEEECCc
Confidence 46889999999999986 5 4 888888644
No 80
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=20.91 E-value=1.7e+02 Score=18.44 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
.++|+|++.|.-.|.-++..+.. . + . ++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~----~-~--~--~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALK----E-F--E--EVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----H-C--S--EEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHH----c-C--C--ceEEEEEeCC
Confidence 36799999998887776655533 2 3 3 7777887654
No 81
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=20.70 E-value=1.2e+02 Score=21.40 Aligned_cols=41 Identities=5% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCCeEEEEeCCChHH------HHHH---HHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHS------TYAL---QWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s------~~a~---~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
.++||+|++.++.-. ..++ ...+...+.. | - ++.++|--.|
T Consensus 23 ~MkRIVIklGGnAL~~~~~~q~~~~~~~a~~Ia~L~~~-G--~--~vVvVHGgGP 72 (332)
T 4axs_A 23 HMSRIVIALGGNALGDNPSQQKELVKIPAAKIAALIQE-G--H--EVIVGHGNGP 72 (332)
T ss_dssp ---CEEEEECGGGGCSSHHHHHHHTHHHHHHHHHHHHT-T--C--CEEEEECCHH
T ss_pred CcceEEEEEChhhcCCChHHHHHHHHHHHHHHHHHHHC-C--C--EEEEEcCCcH
Confidence 357899999987521 1122 1222233344 5 6 9999998543
No 82
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=20.69 E-value=1.5e+02 Score=21.89 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
.++|+|+-|.-..|....+..+.-+... | . +++.+...|.|
T Consensus 61 ~~~VvIG~D~R~ss~~~~~a~a~gl~s~-G--i--~V~~~g~~pTP 101 (469)
T 3pdk_A 61 RPKVIIGRDTRISGHMLEGALVAGLLST-G--A--EVMRLGVISTP 101 (469)
T ss_dssp SCEEEEEECSCTTHHHHHHHHHHHHHTT-T--C--EEEEEEECCHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHC-C--C--EEEEeCCCChH
Confidence 4679999999998887777777766666 7 7 99988765544
No 83
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=20.60 E-value=1.5e+02 Score=21.68 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=32.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
++|+|+-|.-.+|....+..+.-+... | . +++.+-..+.|
T Consensus 49 ~~VvVG~D~R~ss~~l~~a~~~gl~a~-G--~--~V~~~g~~pTP 88 (463)
T 1p5d_X 49 PCVAVGRDGRLSGPELVKQLIQGLVDC-G--C--QVSDVGMVPTP 88 (463)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHHHHTB-T--C--EEEEEEECCHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHC-C--C--EEEEeCCCChH
Confidence 579999999999988888877777776 7 7 88888775544
No 84
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=20.60 E-value=1.3e+02 Score=21.59 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 165 ~~~eRiar~AFe~A~~r-r--k--kVt~v~KaN 192 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGR-R--K--QLCSVDKAN 192 (358)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhc-C--C--eEEEEECCc
Confidence 46889999999999986 5 4 888888643
No 85
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=20.58 E-value=2.6e+02 Score=20.55 Aligned_cols=82 Identities=10% Similarity=0.048 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH-HHHHHhhhcCccc
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE-EAKEICSSKSVMI 95 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 95 (125)
..+++.+++|..+|++. + - +|+++|=..-...+ +..+++..+++.+ ++.+.+...++.+
T Consensus 208 ~~~eRiar~AFe~A~~r-~--k--kVt~v~KaNIlk~t---------------dglfr~~~~eva~~eYp~~~~~~~I~~ 267 (427)
T 3us8_A 208 ESITEFARASFNYGLQR-K--V--PVYLSTKNTILKAY---------------DGRFKDIFQKVFDEEFAAQFKAEKLWY 267 (427)
T ss_dssp HHHHHHHHHHHHHHHHH-T--C--CEEEEECTTTSTTH---------------HHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECcccchhh---------------hhHHHHHHHHHHHHhCccccCCCCeEE
Confidence 46789999999999987 5 5 88888753321111 1122222222222 2222233345666
Q ss_pred ceeeeCcchHHHhccCCccEEEE
Q 033189 96 SLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 96 ~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
...++-..+.+++.+-..=|++.
T Consensus 268 ~~~~VD~~~mqlv~~P~~FVivt 290 (427)
T 3us8_A 268 EHRLIDDMVASALKWSGGYVWAC 290 (427)
T ss_dssp EEEEHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEHHHHHHHHhhCCCCcEEEe
Confidence 66666666666666543224443
No 86
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=20.15 E-value=1.5e+02 Score=21.87 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=32.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
.++|+|+-|.-..|....+.++.-+... | . +++.+...+.|
T Consensus 49 ~~~VvVG~D~R~ss~~~~~a~~~gl~a~-G--i--~V~~~g~~pTP 89 (481)
T 4hjh_A 49 GDKVFVGRDLRPSSPDIAALAMGAIEDA-G--F--TPVNCGVLPTP 89 (481)
T ss_dssp TCEEEEEECSSTTHHHHHHHHHHHHHHT-T--C--EEEEEEECCHH
T ss_pred CCeEEEeecCCcCHHHHHHHHHHHHHHC-C--C--EEEEeCCcCcH
Confidence 4689999999999998888888877776 7 7 88877665443
No 87
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=20.14 E-value=2.6e+02 Score=20.46 Aligned_cols=75 Identities=8% Similarity=0.023 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH-HHHHHHhhhcCccc
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV-EEAKEICSSKSVMI 95 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 95 (125)
..+++.+++|..+|++. + - +|+++|=..-...+ +.-+++..+++. .++.+.+...++.+
T Consensus 203 ~~ieRIar~AFe~A~~r-~--~--kVt~v~KaNVlk~s---------------~glfr~v~~eva~~eYpd~~~~~~I~~ 262 (427)
T 2qfy_A 203 ESIEGFAHSSFKLAIDK-K--L--NLFLSTKNTILKKY---------------DGRFKDIFQEVYEAQYKSKFEQLGIHY 262 (427)
T ss_dssp HHHHHHHHHHHHHHHHH-T--C--CEEEEECTTTSTTH---------------HHHHHHHHHHHHHHHTHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHh-C--C--ceEEEECCccchhh---------------hHHHHHHHHHHHHHhCCCcccCCeEEE
Confidence 67899999999999987 5 4 78877754332211 112222333332 22333233446666
Q ss_pred ceeeeCcchHHHhccC
Q 033189 96 SLAVLGSVSDYCAHHA 111 (125)
Q Consensus 96 ~~~~~Gs~s~~vl~~a 111 (125)
...++-..+.+++.+-
T Consensus 263 e~~~VD~~amqlV~~P 278 (427)
T 2qfy_A 263 EHRLIDDMVAQMIKSK 278 (427)
T ss_dssp EEEEHHHHHHHHHHSC
T ss_pred EEEEHHHHHHHHHhCC
Confidence 6777777777776653
No 88
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=20.02 E-value=1.3e+02 Score=21.53 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . - +|+++|=..
T Consensus 163 ~~~eRIar~AFe~A~~r-r--k--kVt~v~KaN 190 (359)
T 2y3z_A 163 PEVERVARVAFEAARKR-R--K--HVVSVDKAN 190 (359)
T ss_dssp HHHHHHHHHHHHHHHTT-T--S--EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHc-C--C--eEEEEECCc
Confidence 46889999999999986 5 4 888888633
Done!