BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033192
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q602N2|RECF_METCA DNA replication and repair protein RecF OS=Methylococcus capsulatus
           (strain ATCC 33009 / NCIMB 11132 / Bath) GN=recF PE=3
           SV=1
          Length = 359

 Score = 32.7 bits (73), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 47  GQQLSWILFATPVLLIFLVRWLSSWDSADMFSASSPWDKR 86
           G+ +S +L  T V L+    W + W  AD  +AS P D+R
Sbjct: 203 GEMVSALLGRTDVELVVRPGWRAGWSYADALAASQPTDRR 242


>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1
          Length = 1086

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 71  WDSADMFSASSPWDKRRRSHHLPSEGSSPWGVAAFIVL 108
           +DS D+    S W + R     PS  S+P GV A  VL
Sbjct: 784 FDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVL 821


>sp|Q2SZI4|FTSW_BURTA Lipid II flippase FtsW OS=Burkholderia thailandensis (strain E264 /
           ATCC 700388 / DSM 13276 / CIP 106301) GN=ftsW PE=3 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 19/88 (21%)

Query: 20  VLLIIAVALIFLGMSSYFNYESIVESAGQQLSWILFATPVLLIFLVRWLSSWDSADMFSA 79
           V+  IA+ ++FLG                +L   L AT V    ++ WLS W    +F+ 
Sbjct: 253 VVAAIAMGVLFLG------------GVNGKLFGGLVATAVGTFTMLVWLSPWRRERIFAY 300

Query: 80  SSPWDKR-------RRSHHLPSEGSSPW 100
             PWD+R       + +H L + G   W
Sbjct: 301 LDPWDERYAQGKAYQLTHSLIAFGRGEW 328


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.138    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,562,689
Number of Sequences: 539616
Number of extensions: 1547582
Number of successful extensions: 4690
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4674
Number of HSP's gapped (non-prelim): 42
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)