Query 033192
Match_columns 125
No_of_seqs 90 out of 92
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12772 bifunctional flagella 57.0 70 0.0015 29.4 8.2 85 22-114 218-303 (609)
2 PF01445 SH: Viral small hydro 41.7 66 0.0014 21.1 4.1 16 32-47 27-42 (57)
3 PF09323 DUF1980: Domain of un 36.7 51 0.0011 25.1 3.6 18 48-65 73-90 (182)
4 COG5336 Uncharacterized protei 32.4 32 0.00069 25.6 1.7 15 94-108 69-83 (116)
5 PTZ00370 STEVOR; Provisional 29.7 37 0.0008 28.9 1.9 14 99-112 256-269 (296)
6 TIGR01478 STEVOR variant surfa 29.0 38 0.00083 28.8 1.9 14 99-112 260-273 (295)
7 PF07835 COX4_pro_2: Bacterial 26.6 72 0.0016 19.6 2.3 17 97-113 24-40 (44)
8 KOG1419 Voltage-gated K+ chann 22.4 3.5E+02 0.0076 25.5 6.8 55 16-71 94-150 (654)
9 PRK10519 hypothetical protein; 21.6 1.8E+02 0.004 22.1 4.2 27 39-65 8-35 (151)
10 PRK02958 tatA twin arginine tr 21.3 1.7E+02 0.0038 19.9 3.6 18 17-34 6-23 (73)
No 1
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=57.03 E-value=70 Score=29.37 Aligned_cols=85 Identities=15% Similarity=0.265 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhhh-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCccCcCCCCCCCCCChH
Q 033192 22 LIIAVALIFLGMSSYF-NYESIVESAGQQLSWILFATPVLLIFLVRWLSSWDSADMFSASSPWDKRRRSHHLPSEGSSPW 100 (125)
Q Consensus 22 ~~l~iv~~~l~~S~Y~-~ye~~~e~~~~ql~~~Lll~PllLll~v~~lSs~~~~~~~~~~~~~~~~~s~h~~~r~ggSPW 100 (125)
.+++++++.+..+... .+++..++..+++.-++-..|+++++. |+ |+. ..+-|...+|+.-.|+-+.|-=.
T Consensus 218 i~~gl~~l~l~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-eKT---E~pT~krl~~ARekGqV~kS~El 289 (609)
T PRK12772 218 ILVGLTAFVIALPLFLKVISSAFSNLPDAIRGFYKAIPLLLIFA----SD-DKT---EEATPKKKSDARKKGQIAKSKEL 289 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cC-CCC---CCCChhHHHHHHhcCCCCchHHH
Confidence 3355555555555555 478888999999888999999999875 43 332 21222222344333433334445
Q ss_pred HHHHHHHHHHHHhh
Q 033192 101 GVAAFIVLLLILVQ 114 (125)
Q Consensus 101 GVAllLvlLL~lvs 114 (125)
..|+.++..+..++
T Consensus 290 ~~a~~l~~~~~~l~ 303 (609)
T PRK12772 290 ALAITLLACTLVLS 303 (609)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 2
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=41.70 E-value=66 Score=21.10 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=11.3
Q ss_pred HhhhhhcHHHHHHHHH
Q 033192 32 GMSSYFNYESIVESAG 47 (125)
Q Consensus 32 ~~S~Y~~ye~~~e~~~ 47 (125)
+...=+.||.+++++.
T Consensus 27 wi~ltItyKTavrhaa 42 (57)
T PF01445_consen 27 WIILTITYKTAVRHAA 42 (57)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3444447999999976
No 3
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=36.69 E-value=51 Score=25.06 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 033192 48 QQLSWILFATPVLLIFLV 65 (125)
Q Consensus 48 ~ql~~~Lll~PllLll~v 65 (125)
....-++++.|+++.+++
T Consensus 73 ~~~~y~l~~iPll~g~l~ 90 (182)
T PF09323_consen 73 KLWSYFLFLIPLLIGFLF 90 (182)
T ss_pred ccHHHHHHHHHHHHHHcC
Confidence 344478999999988886
No 4
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.45 E-value=32 Score=25.59 Aligned_cols=15 Identities=47% Similarity=1.167 Sum_probs=10.9
Q ss_pred CCCCChHHHHHHHHH
Q 033192 94 SEGSSPWGVAAFIVL 108 (125)
Q Consensus 94 r~ggSPWGVAllLvl 108 (125)
-+|.||||.-.++++
T Consensus 69 ~agTsPwglIv~lll 83 (116)
T COG5336 69 FAGTSPWGLIVFLLL 83 (116)
T ss_pred hcCCCcHHHHHHHHH
Confidence 478999997666544
No 5
>PTZ00370 STEVOR; Provisional
Probab=29.70 E-value=37 Score=28.95 Aligned_cols=14 Identities=43% Similarity=1.068 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHH
Q 033192 99 PWGVAAFIVLLLIL 112 (125)
Q Consensus 99 PWGVAllLvlLL~l 112 (125)
|||.|++++++|..
T Consensus 256 Pygiaalvllil~v 269 (296)
T PTZ00370 256 PYGIAALVLLILAV 269 (296)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988777654
No 6
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.00 E-value=38 Score=28.84 Aligned_cols=14 Identities=36% Similarity=1.044 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHH
Q 033192 99 PWGVAAFIVLLLIL 112 (125)
Q Consensus 99 PWGVAllLvlLL~l 112 (125)
|||.|++++++|..
T Consensus 260 Pcgiaalvllil~v 273 (295)
T TIGR01478 260 PYGIAALVLIILTV 273 (295)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988777654
No 7
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=26.64 E-value=72 Score=19.58 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHHh
Q 033192 97 SSPWGVAAFIVLLLILV 113 (125)
Q Consensus 97 gSPWGVAllLvlLL~lv 113 (125)
-+-||..+.+++|++|.
T Consensus 24 ~~k~~~~~~~~~li~la 40 (44)
T PF07835_consen 24 LTKWGTIAIAAILIFLA 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46799999988888875
No 8
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=22.39 E-value=3.5e+02 Score=25.52 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHhcC
Q 033192 16 LPYPVLLIIAVALIFLGMSSYFNYESIVESAGQQLSWI--LFATPVLLIFLVRWLSSW 71 (125)
Q Consensus 16 pP~~Ll~~l~iv~~~l~~S~Y~~ye~~~e~~~~ql~~~--Lll~PllLll~v~~lSs~ 71 (125)
.+||...|+.++ .-|.+|-..+-|+-.+.+.+-+-++ .++.=..+=++||.||..
T Consensus 94 f~YH~~VFllVl-~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAG 150 (654)
T KOG1419|consen 94 FLYHFFVFLLVL-SCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAG 150 (654)
T ss_pred HHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578877665444 4444555555444444444333322 122223444788999964
No 9
>PRK10519 hypothetical protein; Provisional
Probab=21.60 E-value=1.8e+02 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHH
Q 033192 39 YESIVESAGQQLSWIL-FATPVLLIFLV 65 (125)
Q Consensus 39 ye~~~e~~~~ql~~~L-ll~PllLll~v 65 (125)
||..+|.+.|.++..+ -+.|.++...+
T Consensus 8 ~d~Fv~GakeG~~i~~~~iiP~li~~~v 35 (151)
T PRK10519 8 TDIFIDGARKGFTIATTNLLPNVLMAFV 35 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988 68888766443
No 10
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=21.26 E-value=1.7e+02 Score=19.88 Aligned_cols=18 Identities=11% Similarity=0.493 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 033192 17 PYPVLLIIAVALIFLGMS 34 (125)
Q Consensus 17 P~~Ll~~l~iv~~~l~~S 34 (125)
|.+++++++|++++.+..
T Consensus 6 ~~elliIl~IvlllFG~k 23 (73)
T PRK02958 6 IWHWLIVLVIVVLVFGTK 23 (73)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 558888887776666544
Done!