Query 033192
Match_columns 125
No_of_seqs 90 out of 92
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 50.0 37 0.0013 26.6 5.9 41 18-65 122-163 (214)
2 1qle_D Cytochrome AA3, ccytoch 33.0 30 0.001 20.4 2.3 18 97-114 23-40 (43)
3 1m56_D Cytochrome C oxidase; m 23.9 53 0.0018 20.0 2.3 18 97-114 31-48 (51)
4 1gp7_A Phospholipase A2; snake 21.9 27 0.00093 25.4 0.9 19 17-35 3-21 (151)
5 1emz_A Envelope glycoprotein E 14.8 1.1E+02 0.0039 16.2 2.1 13 97-109 1-13 (26)
6 3s8f_C Cytochrome C oxidase po 14.1 1.9E+02 0.0066 16.2 3.1 25 15-39 3-27 (34)
7 2qez_A Ethanolamine ammonia-ly 9.8 66 0.0023 27.7 0.1 6 112-117 402-407 (455)
8 1q2f_A PNC27; P53 protein, MDM 8.5 72 0.0025 17.9 -0.1 8 116-123 5-12 (32)
9 1m56_C Cytochrome C oxidase; m 8.3 7.1E+02 0.024 19.1 5.8 26 13-38 12-37 (266)
10 2bn5_B U1 small nuclear ribonu 8.1 1.4E+02 0.0048 15.7 1.0 11 8-18 7-17 (26)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=50.04 E-value=37 Score=26.59 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh-cHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 033192 18 YPVLLIIAVALIFLGMSSYF-NYESIVESAGQQLSWILFATPVLLIFLV 65 (125)
Q Consensus 18 ~~Ll~~l~iv~~~l~~S~Y~-~ye~~~e~~~~ql~~~Lll~PllLll~v 65 (125)
+++++|++-+.++.|+-.|- ++.++..++ .++.|+.++|++
T Consensus 122 lGi~LFL~evall~WVKF~~~~~~aa~~~t-------~vliPv~i~F~~ 163 (214)
T 4hkr_A 122 LGLILFLLEIAILCWVKFYDLSRRAAWSAT-------VVLIPVMIIFMA 163 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-------HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheEEeecCCcHHHHHHH-------HHHHHHHHHHHH
Confidence 46788899999999988776 666665554 344565555544
No 2
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=33.04 E-value=30 Score=20.39 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHHhh
Q 033192 97 SSPWGVAAFIVLLLILVQ 114 (125)
Q Consensus 97 gSPWGVAllLvlLL~lvs 114 (125)
-+-||..+.++++++|.=
T Consensus 23 ~~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 23 GATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367999999999999863
No 3
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=23.87 E-value=53 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHHhh
Q 033192 97 SSPWGVAAFIVLLLILVQ 114 (125)
Q Consensus 97 gSPWGVAllLvlLL~lvs 114 (125)
-+-||..+.++++++|.=
T Consensus 31 ~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467999999999998863
No 4
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=21.91 E-value=27 Score=25.35 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhh
Q 033192 17 PYPVLLIIAVALIFLGMSS 35 (125)
Q Consensus 17 P~~Ll~~l~iv~~~l~~S~ 35 (125)
|.|||+++++.+.+++.+.
T Consensus 3 ~~~ll~~~~v~v~ll~~~~ 21 (151)
T 1gp7_A 3 PAHLLVLSAVCVSLLGASS 21 (151)
T ss_dssp -------------------
T ss_pred cHHHHHHHHHHHHHHHHhh
Confidence 7899998888877777443
No 5
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.80 E-value=1.1e+02 Score=16.22 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHH
Q 033192 97 SSPWGVAAFIVLL 109 (125)
Q Consensus 97 gSPWGVAllLvlL 109 (125)
|.||||-+-++..
T Consensus 1 g~hwGvl~glayf 13 (26)
T 1emz_A 1 GAHWGVLAGIAYF 13 (26)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCcchhhHHHHHH
Confidence 4689998776543
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=14.06 E-value=1.9e+02 Score=16.18 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=18.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcH
Q 033192 15 PLPYPVLLIIAVALIFLGMSSYFNY 39 (125)
Q Consensus 15 ~pP~~Ll~~l~iv~~~l~~S~Y~~y 39 (125)
+.|.+-++.+.++..++.+.|..-|
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHHH
Confidence 4577777888888888888887765
No 7
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=9.77 E-value=66 Score=27.72 Aligned_cols=6 Identities=33% Similarity=0.960 Sum_probs=2.6
Q ss_pred Hhhhcc
Q 033192 112 LVQYQS 117 (125)
Q Consensus 112 lvsyqS 117 (125)
|++|||
T Consensus 402 MLnYqs 407 (455)
T 2qez_A 402 MLNYQT 407 (455)
T ss_dssp HHHHHC
T ss_pred eecccc
Confidence 444444
No 8
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=8.45 E-value=72 Score=17.88 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.4
Q ss_pred cccccccc
Q 033192 116 QSRFLDSW 123 (125)
Q Consensus 116 qSsf~~~W 123 (125)
|-+|+|.|
T Consensus 5 qq~FadLW 12 (32)
T 1q2f_A 5 QETFSDLW 12 (32)
T ss_dssp STTTTTHH
T ss_pred HHHHHHHH
Confidence 67788887
No 9
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=8.30 E-value=7.1e+02 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhhc
Q 033192 13 LSPLPYPVLLIIAVALIFLGMSSYFN 38 (125)
Q Consensus 13 ls~pP~~Ll~~l~iv~~~l~~S~Y~~ 38 (125)
.++.|.|+..-+++..++++...|++
T Consensus 12 ~~~SpwPl~~a~~~~~~~~g~~~~~~ 37 (266)
T 1m56_C 12 LPPSIWPFMASVGAFVMLFGAVLWMH 37 (266)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888887777765
No 10
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=8.08 E-value=1.4e+02 Score=15.66 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.2
Q ss_pred cccccCCCCcH
Q 033192 8 FDSFTLSPLPY 18 (125)
Q Consensus 8 ~~~~sls~pP~ 18 (125)
...||+.+||.
T Consensus 7 hnmfsvppppi 17 (26)
T 2bn5_B 7 HNMFSVPPPPI 17 (26)
T ss_dssp CCCCSCCCCSC
T ss_pred CceecCCCCCc
Confidence 45788888883
Done!