Query 033192
Match_columns 125
No_of_seqs 90 out of 92
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 18:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 13.5 1.9E+02 0.014 20.3 5.8 50 13-70 9-58 (259)
2 d1ansa_ g.11.1.1 (A:) Neurotox 13.4 12 0.00084 18.8 -0.9 7 95-101 8-14 (27)
3 d1t98a1 a.4.5.65 (A:8-118) Chr 12.4 35 0.0025 22.5 1.1 20 9-28 11-30 (111)
4 d1f2va_ c.23.17.1 (A:) Precorr 8.2 89 0.0065 22.1 2.2 17 93-109 189-205 (209)
5 d1m56c_ f.25.1.1 (C:) Bacteria 8.1 3.3E+02 0.024 18.8 6.0 26 14-39 12-37 (265)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 7.3 1.7E+02 0.012 14.8 3.0 23 17-39 4-26 (33)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 6.2 2.7E+02 0.02 16.1 3.9 14 31-44 19-32 (158)
8 d1kwia_ d.17.1.3 (A:) Cathelic 6.1 1.3E+02 0.0093 17.8 1.8 13 38-50 3-15 (98)
9 d1ou0a_ c.23.17.1 (A:) Precorr 5.5 1.2E+02 0.009 21.0 1.7 17 93-109 171-187 (190)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 5.3 2.5E+02 0.018 14.6 2.5 17 99-115 18-34 (37)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.51 E-value=1.9e+02 Score=20.32 Aligned_cols=50 Identities=14% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q 033192 13 LSPLPYPVLLIIAVALIFLGMSSYFNYESIVESAGQQLSWILFATPVLLIFLVRWLSS 70 (125)
Q Consensus 13 ls~pP~~Ll~~l~iv~~~l~~S~Y~~ye~~~e~~~~ql~~~Lll~PllLll~v~~lSs 70 (125)
+++.|.|++.-+.+..+..+...|+++. ....+++.+.++++....|+.+
T Consensus 9 v~~SpWP~~~s~~~~~~~~g~~~~~~~~--------~~~~~~~gl~~~~~~~~~W~rd 58 (259)
T d1v54c_ 9 VNPSPWPLTGALSALLMTSGLTMWFHFN--------SMTLLMIGLTTNMLTMYQWWRD 58 (259)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHS--------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998888888888887776521 2224455555556666677663
No 2
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=13.35 E-value=12 Score=18.84 Aligned_cols=7 Identities=57% Similarity=1.484 Sum_probs=5.5
Q ss_pred CCCChHH
Q 033192 95 EGSSPWG 101 (125)
Q Consensus 95 ~ggSPWG 101 (125)
-||-|||
T Consensus 8 wggcpwg 14 (27)
T d1ansa_ 8 WGGCPWG 14 (27)
T ss_dssp TTTCSSS
T ss_pred ccCCccc
Confidence 4788987
No 3
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.37 E-value=35 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.3
Q ss_pred ccccCCCCcHHHHHHHHHHH
Q 033192 9 DSFTLSPLPYPVLLIIAVAL 28 (125)
Q Consensus 9 ~~~sls~pP~~Ll~~l~iv~ 28 (125)
+-||++.|+-.|++.++|..
T Consensus 11 ~~fsL~L~terLaFLlaIa~ 30 (111)
T d1t98a1 11 NDFSISLPVDRLSFLLAVAT 30 (111)
T ss_dssp HTCCEEECHHHHHHHHHHHH
T ss_pred ccceecCcHHHHHHHHHHHH
Confidence 56899999999997777763
No 4
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=8.23 E-value=89 Score=22.11 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=13.5
Q ss_pred CCCCCChHHHHHHHHHH
Q 033192 93 PSEGSSPWGVAAFIVLL 109 (125)
Q Consensus 93 ~r~ggSPWGVAllLvlL 109 (125)
+|-||||+.+|.+=+|+
T Consensus 189 GrkGGS~vAaAivNALl 205 (209)
T d1f2va_ 189 GRLGGSAMTAAALNSLA 205 (209)
T ss_dssp TTCCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 47899999999875553
No 5
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.11 E-value=3.3e+02 Score=18.84 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=18.1
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhhcH
Q 033192 14 SPLPYPVLLIIAVALIFLGMSSYFNY 39 (125)
Q Consensus 14 s~pP~~Ll~~l~iv~~~l~~S~Y~~y 39 (125)
++.|.|++.-+++..+..+...++++
T Consensus 12 ~~SpWPi~~s~~l~~~~~g~~~~~~~ 37 (265)
T d1m56c_ 12 PPSIWPFMASVGAFVMLFGAVLWMHG 37 (265)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHc
Confidence 46778887777777777776666653
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=7.30 E-value=1.7e+02 Score=14.85 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcH
Q 033192 17 PYPVLLIIAVALIFLGMSSYFNY 39 (125)
Q Consensus 17 P~~Ll~~l~iv~~~l~~S~Y~~y 39 (125)
|.+.+...+|+.+.+.+.|+--|
T Consensus 4 p~gal~vi~il~l~ilvfw~gv~ 26 (33)
T d1xmec1 4 PKGALAVILVLTLTILVFWLGVY 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.16 E-value=2.7e+02 Score=16.07 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=6.7
Q ss_pred HHhhhhhcHHHHHH
Q 033192 31 LGMSSYFNYESIVE 44 (125)
Q Consensus 31 l~~S~Y~~ye~~~e 44 (125)
++++.|.+|-+..+
T Consensus 19 ia~P~~~~~~~~a~ 32 (158)
T d2pila_ 19 VALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555665544333
No 8
>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.07 E-value=1.3e+02 Score=17.75 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHhh
Q 033192 38 NYESIVESAGQQL 50 (125)
Q Consensus 38 ~ye~~~e~~~~ql 50 (125)
+|+++++.|.+++
T Consensus 3 sy~eav~~Al~~~ 15 (98)
T d1kwia_ 3 SYREAVLRAVDRL 15 (98)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665554
No 9
>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.52 E-value=1.2e+02 Score=21.03 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.7
Q ss_pred CCCCCChHHHHHHHHHH
Q 033192 93 PSEGSSPWGVAAFIVLL 109 (125)
Q Consensus 93 ~r~ggSPWGVAllLvlL 109 (125)
+|-||||..+|.+=+|+
T Consensus 171 GrkGGS~vAaAivNAL~ 187 (190)
T d1ou0a_ 171 GHRGGSPIAASIVNGFG 187 (190)
T ss_dssp SSCCCHHHHHHHHHHHG
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 47899999999876654
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.26 E-value=2.5e+02 Score=14.62 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHhhh
Q 033192 99 PWGVAAFIVLLLILVQY 115 (125)
Q Consensus 99 PWGVAllLvlLL~lvsy 115 (125)
=||.-+..|+-.+.-||
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49987766664444444
Done!