Query 033193
Match_columns 125
No_of_seqs 104 out of 646
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 23.4 23 0.00078 18.1 0.5 15 104-118 1-15 (27)
2 1iie_A Protein (HLA-DR antigen 19.6 54 0.0018 21.0 1.8 14 20-33 47-60 (75)
3 2cpy_A RNA-binding protein 12; 16.2 88 0.003 19.8 2.3 36 78-117 32-67 (114)
4 2kwt_A Protease NS2-3; NS2 dom 14.8 69 0.0024 17.4 1.2 11 21-31 7-17 (33)
5 4gc0_A D-xylose-proton symport 10.8 93 0.0032 23.9 1.3 14 57-70 456-469 (491)
6 4hkr_A Calcium release-activat 10.1 2.2E+02 0.0075 21.6 3.1 24 69-92 164-187 (214)
7 3q7a_B Farnesyltransferase bet 9.4 1.9E+02 0.0066 24.6 2.9 19 19-37 85-103 (520)
8 2i3t_B Spindle assembly checkp 9.3 58 0.002 19.6 -0.3 20 88-107 24-43 (54)
9 1nh2_B Transcription initiatio 9.2 1.6E+02 0.0055 17.2 1.7 29 70-98 5-39 (53)
10 3bv8_A Tetrahydrodipicolinate 9.1 1.2E+02 0.0043 19.7 1.2 24 77-100 56-80 (87)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=23.37 E-value=23 Score=18.10 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=11.7
Q ss_pred CCCCccceeeeeccC
Q 033193 104 TGKGKNKFVDFIMPK 118 (125)
Q Consensus 104 ~~~~~~~~~~~~~~~ 118 (125)
+.||+++..||-+-.
T Consensus 1 sekgnakmidfatls 15 (27)
T 3owt_C 1 SEKGNAKMIDFATLS 15 (27)
T ss_pred CCCCcceeeehHHHH
Confidence 358999999997643
No 2
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=19.62 E-value=54 Score=21.02 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHH
Q 033193 20 DDEQWLAYWILYSF 33 (125)
Q Consensus 20 ~~~~WL~YWiv~al 33 (125)
....|+.+|.+|-.
T Consensus 47 ~FEsWM~~WLLFeM 60 (75)
T 1iie_A 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45789999998754
No 3
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=16.20 E-value=88 Score=19.80 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHhHHHhhhcccccccccccCCCCCCCCCCccceeeeecc
Q 033193 78 VRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMP 117 (125)
Q Consensus 78 i~P~l~~~e~~id~~l~~~r~~~~~~~~~~~~~~~~~~~~ 117 (125)
|+.++.++ +.++..+.-.+.. ++..||- +||+|-.+
T Consensus 32 l~~~F~~~-g~v~~~v~i~~d~--~g~~~G~-afV~F~~~ 67 (114)
T 2cpy_A 32 VLQFLEGI-PVDENAVHVLVDN--NGQGLGQ-ALVQFKNE 67 (114)
T ss_dssp HHHHTTTS-CCCSTTEEECCCT--TSSCSSC-EEEECSSH
T ss_pred HHHHHHhC-CCcCCeEEEEECC--CCCcceE-EEEEECCH
Confidence 45556665 4453334444443 6667887 89998654
No 4
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=14.82 E-value=69 Score=17.39 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.7
Q ss_pred hhHHHHHHHHH
Q 033193 21 DEQWLAYWILY 31 (125)
Q Consensus 21 ~~~WL~YWiv~ 31 (125)
..-|++|+++=
T Consensus 7 ~lWWlqYfi~R 17 (33)
T 2kwt_A 7 LIWWLQYFITR 17 (33)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35688888753
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=10.76 E-value=93 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCcH
Q 033193 57 VLAAWLVLPQFRGA 70 (125)
Q Consensus 57 ~fllwL~~P~~~GA 70 (125)
++++|++.|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 34578899999984
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=10.08 E-value=2.2e+02 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHhHHHhhhcccccc
Q 033193 69 GAAFIYERFVRQQIRQYRGGKDHH 92 (125)
Q Consensus 69 GA~~lY~~~i~P~l~~~e~~id~~ 92 (125)
-|...|++.+....+.+.++|++.
T Consensus 164 Fa~hFYrsL~~hk~e~~~~~i~el 187 (214)
T 4hkr_A 164 FAIHFYRSLVSHKYEVTVSGIREL 187 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999888877776654
No 7
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=9.41 E-value=1.9e+02 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 033193 19 VDDEQWLAYWILYSFLTLT 37 (125)
Q Consensus 19 ~~~~~WL~YWiv~al~~~~ 37 (125)
+..+-|+.||++-|+-.+-
T Consensus 85 Dasr~wl~Yw~l~aL~LLg 103 (520)
T 3q7a_B 85 DASRPWLVFWTVHSLDLLG 103 (520)
T ss_dssp GGGHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhC
Confidence 4567899999999887664
No 8
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=9.33 E-value=58 Score=19.57 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=15.7
Q ss_pred ccccccccccCCCCCCCCCC
Q 033193 88 GKDHHQHQHRKSSPTGTGKG 107 (125)
Q Consensus 88 ~id~~l~~~r~~~~~~~~~~ 107 (125)
..+-.+|++||.|.++.+|-
T Consensus 24 ~~E~sfeEllA~sRg~~~~~ 43 (54)
T 2i3t_B 24 RLEFSLEEVLAISRNVYKRV 43 (54)
T ss_dssp -CBCCHHHHHHHTTTCSSCC
T ss_pred cceeeHHHHHHHhcCccccc
Confidence 56677899999998888874
No 9
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=9.17 E-value=1.6e+02 Score=17.24 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHhh-----hcccccc-cccccC
Q 033193 70 AAFIYERFVRQQIRQY-----RGGKDHH-QHQHRK 98 (125)
Q Consensus 70 A~~lY~~~i~P~l~~~-----e~~id~~-l~~~r~ 98 (125)
..-+|+.+|.+.+..- +.++|.. ++++|+
T Consensus 5 v~~vY~~VI~dVI~~vr~~F~~~Gvde~vL~eLk~ 39 (53)
T 1nh2_B 5 ASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKN 39 (53)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4568999999987652 3455544 355554
No 10
>3bv8_A Tetrahydrodipicolinate acetyltransferase; PFAM08503, structural genomics, PSI-2, PR structure initiative; 1.75A {Staphylococcus aureus subsp}
Probab=9.06 E-value=1.2e+02 Score=19.71 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=18.8
Q ss_pred HHHhHHHhhhcccccc-cccccCCC
Q 033193 77 FVRQQIRQYRGGKDHH-QHQHRKSS 100 (125)
Q Consensus 77 ~i~P~l~~~e~~id~~-l~~~r~~~ 100 (125)
-|+|+++.++..|++. +|.-|.+|
T Consensus 56 ~i~~~le~n~~~I~dy~iEnDrRNS 80 (87)
T 3bv8_A 56 DWKPFYEAYGSQFEDIEIEMDRRNS 80 (87)
T ss_dssp HHHHHHHHHGGGEEEEEEEECGGGG
T ss_pred HHHHHHHhhhhhccEEEEEecCccc
Confidence 5799999998887654 58888776
Done!