Query 033193
Match_columns 125
No_of_seqs 104 out of 646
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 18:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x68a1 g.39.1.3 (A:8-36) Four 22.6 19 0.0014 17.7 1.4 13 102-114 7-19 (29)
2 d1x4la1 g.39.1.3 (A:8-36) Four 20.6 19 0.0014 17.8 1.1 11 104-114 9-19 (29)
3 d1iiea_ a.109.1.1 (A:) Class I 20.6 24 0.0017 21.2 1.8 14 20-33 47-60 (75)
4 d2csba4 a.60.2.4 (A:465-519) T 16.1 34 0.0025 18.7 1.6 22 5-26 1-22 (55)
5 d2a6sa1 d.298.1.1 (A:1-83) Tox 13.6 16 0.0012 22.0 -0.3 25 84-108 22-46 (83)
6 d2cpha1 d.58.7.1 (A:454-547) P 10.8 91 0.0066 17.8 2.7 38 78-118 25-62 (94)
7 d2disa1 d.58.7.1 (A:8-103) Hyp 10.1 1.1E+02 0.0078 17.3 2.9 38 78-117 18-55 (96)
8 d2i5nh2 f.23.10.1 (H:1-36) Pho 9.0 1.3E+02 0.0093 14.9 2.4 14 21-34 18-31 (36)
9 d1nh2b_ a.32.1.1 (B:) Large ch 8.0 93 0.0068 16.5 1.7 15 70-84 4-18 (46)
10 d1qled_ f.23.8.1 (D:) Bacteria 7.7 1.7E+02 0.013 15.3 3.0 26 38-63 14-39 (43)
No 1
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.55 E-value=19 Score=17.73 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=10.0
Q ss_pred CCCCCCccceeee
Q 033193 102 TGTGKGKNKFVDF 114 (125)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (125)
--+|.|-.+|++|
T Consensus 7 PItg~gG~k~isF 19 (29)
T d1x68a1 7 PISGLTGAKFICF 19 (29)
T ss_dssp CCCTTTTCCEEEE
T ss_pred cccccCCceEEEe
Confidence 3467788899998
No 2
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.59 E-value=19 Score=17.82 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=8.5
Q ss_pred CCCCccceeee
Q 033193 104 TGKGKNKFVDF 114 (125)
Q Consensus 104 ~~~~~~~~~~~ 114 (125)
+|.|-.||++|
T Consensus 9 tg~gg~kyisF 19 (29)
T d1x4la1 9 SGLGGTKYISF 19 (29)
T ss_dssp CCSSSCSCEEC
T ss_pred cccCCceEEEe
Confidence 56677789998
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.58 E-value=24 Score=21.16 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHH
Q 033193 20 DDEQWLAYWILYSF 33 (125)
Q Consensus 20 ~~~~WL~YWiv~al 33 (125)
+...|+.+|.+|-.
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999998754
No 4
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=16.07 E-value=34 Score=18.68 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.9
Q ss_pred hHHHHHHHhhCCChhhhhHHHH
Q 033193 5 PLYASVVAIESPSKVDDEQWLA 26 (125)
Q Consensus 5 Pay~S~kal~~~~~~~~~~WL~ 26 (125)
|+|+|+-+++.-+.+...+.|.
T Consensus 1 pgyaslisirgidreraerllk 22 (55)
T d2csba4 1 PGYASLISIRGIDRERAERLLK 22 (55)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHH
T ss_pred CCccceeeeecccHHHHHHHHH
Confidence 7899999988877766666654
No 5
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=13.56 E-value=16 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.6
Q ss_pred hhhcccccccccccCCCCCCCCCCc
Q 033193 84 QYRGGKDHHQHQHRKSSPTGTGKGK 108 (125)
Q Consensus 84 ~~e~~id~~l~~~r~~~~~~~~~~~ 108 (125)
+..+.|++.++++...+-|+.||+.
T Consensus 22 k~~kkI~~ll~~i~~~p~~g~gkpE 46 (83)
T d2a6sa1 22 RIVKKINELIKDTRRTPFEGKGKPE 46 (83)
T ss_dssp HHHHHHHHHHHHHHHSTTSSTTCCE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCCc
Confidence 3455788888888888888888876
No 6
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.80 E-value=91 Score=17.77 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=21.2
Q ss_pred HHhHHHhhhcccccccccccCCCCCCCCCCccceeeeeccC
Q 033193 78 VRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPK 118 (125)
Q Consensus 78 i~P~l~~~e~~id~~l~~~r~~~~~~~~~~~~~~~~~~~~~ 118 (125)
|+-+++++ +.|.+ +.-.|....++..+|- +||+|-.+.
T Consensus 25 l~~~F~~~-G~i~~-v~i~~~~~~~g~~rg~-afV~f~~~~ 62 (94)
T d2cpha1 25 IRELFSTF-GELKT-VRLPKKMTGTGAHRGF-GFVDFITKQ 62 (94)
T ss_dssp HHHHHHTT-SCEEE-EECCCCCSSSCSSCSE-EEEEESSHH
T ss_pred HHHHHHHh-CCceE-EEEEeccccCCCcccE-EEEEECCHH
Confidence 45555555 33322 2233444456666776 899997653
No 7
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.10 E-value=1.1e+02 Score=17.33 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHhHHHhhhcccccccccccCCCCCCCCCCccceeeeecc
Q 033193 78 VRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMP 117 (125)
Q Consensus 78 i~P~l~~~e~~id~~l~~~r~~~~~~~~~~~~~~~~~~~~ 117 (125)
|+-+++++-..+.+. .-.|....++..+|- +||+|-.+
T Consensus 18 l~~~f~~~g~~i~~v-~~~~~~~~~~~~rg~-aFV~F~~~ 55 (96)
T d2disa1 18 ILEEIAKVTEGVLDV-IVYASAADKMKNRGF-AFVEYESH 55 (96)
T ss_dssp HHHHHHHHSTTEEEE-ECCSSSCTTTTTCCE-EEEEESSH
T ss_pred HHHHHHHhCCcceEE-EEeeeccccccCCCe-EEEEEcCH
Confidence 445566664334432 223333334445665 78888765
No 8
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=9.03 E-value=1.3e+02 Score=14.86 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHH
Q 033193 21 DEQWLAYWILYSFL 34 (125)
Q Consensus 21 ~~~WL~YWiv~al~ 34 (125)
+.+||.-|.+.-+.
T Consensus 18 yaqwlviwtvvlly 31 (36)
T d2i5nh2 18 YAQWLVIWTVVLLY 31 (36)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 46888888876554
No 9
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.98 E-value=93 Score=16.54 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHh
Q 033193 70 AAFIYERFVRQQIRQ 84 (125)
Q Consensus 70 A~~lY~~~i~P~l~~ 84 (125)
+.-+|+.+|.-.+..
T Consensus 4 v~~vY~~VI~dVI~~ 18 (46)
T d1nh2b_ 4 ASRVYEIIVESVVNE 18 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466888888777655
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.68 E-value=1.7e+02 Score=15.26 Aligned_cols=26 Identities=4% Similarity=0.075 Sum_probs=13.6
Q ss_pred HHHHhhhhhccchHHHHHHHHHHHHh
Q 033193 38 EMVLQPVLEWIPIWYSVKLVLAAWLV 63 (125)
Q Consensus 38 E~~~~~~~~~iPfY~~~Kl~fllwL~ 63 (125)
|--++.++.|..-.-.+-++++++|.
T Consensus 14 EkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 14 QATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555553
Done!