Query 033196
Match_columns 125
No_of_seqs 128 out of 599
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 10:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.2 1.1E-11 2.3E-16 104.2 2.2 62 1-62 277-338 (358)
2 TIGR00817 tpt Tpt phosphate/ph 98.1 3.9E-07 8.6E-12 72.8 -1.9 58 1-58 242-299 (302)
3 PRK10532 threonine and homoser 98.0 1.2E-06 2.5E-11 70.4 0.7 61 1-61 230-290 (293)
4 PRK11453 O-acetylserine/cystei 98.0 2.2E-06 4.8E-11 68.8 1.0 54 2-55 237-290 (299)
5 PRK11689 aromatic amino acid e 97.9 2.8E-06 6.1E-11 68.2 0.9 54 1-54 236-289 (295)
6 PF00892 EamA: EamA-like trans 97.8 8.1E-06 1.8E-10 55.0 1.1 50 2-51 76-125 (126)
7 TIGR03340 phn_DUF6 phosphonate 97.7 2.8E-05 6.1E-10 61.8 2.8 49 2-50 233-281 (281)
8 PRK11272 putative DMT superfam 97.6 1.3E-05 2.9E-10 64.1 0.6 54 2-55 235-288 (292)
9 PRK02971 4-amino-4-deoxy-L-ara 97.5 5E-05 1.1E-09 56.2 1.4 54 3-56 71-126 (129)
10 PTZ00343 triose or hexose phos 97.4 6E-05 1.3E-09 62.7 1.0 53 1-53 297-349 (350)
11 PRK15430 putative chlorampheni 97.3 6.7E-05 1.4E-09 60.4 1.0 51 1-51 234-284 (296)
12 COG2510 Predicted membrane pro 97.3 0.00012 2.5E-09 56.0 2.2 47 6-52 93-139 (140)
13 PF13536 EmrE: Multidrug resis 97.2 0.00015 3.3E-09 50.9 1.2 51 6-56 60-110 (113)
14 TIGR00950 2A78 Carboxylate/Ami 97.0 0.00042 9.2E-09 53.2 1.9 47 1-47 213-259 (260)
15 PF03151 TPT: Triose-phosphate 96.8 0.00067 1.4E-08 48.4 1.7 52 1-52 102-153 (153)
16 PRK15051 4-amino-4-deoxy-L-ara 96.6 0.0017 3.7E-08 46.5 2.5 37 15-51 72-108 (111)
17 COG0697 RhaT Permeases of the 96.3 0.0016 3.6E-08 49.4 1.2 52 2-53 237-288 (292)
18 PF06027 DUF914: Eukaryotic pr 96.2 0.0042 9.2E-08 52.7 3.3 67 3-69 256-322 (334)
19 PRK10452 multidrug efflux syst 96.2 0.0037 8E-08 46.2 2.5 44 11-54 62-105 (120)
20 TIGR03340 phn_DUF6 phosphonate 96.2 0.003 6.5E-08 50.3 2.1 49 5-53 88-136 (281)
21 TIGR00950 2A78 Carboxylate/Ami 95.9 0.0038 8.2E-08 48.0 1.5 51 3-53 70-120 (260)
22 PRK09541 emrE multidrug efflux 95.4 0.011 2.5E-07 42.8 2.4 42 12-53 63-104 (110)
23 PF08449 UAA: UAA transporter 95.3 0.0069 1.5E-07 49.0 1.1 56 2-57 247-302 (303)
24 COG0697 RhaT Permeases of the 95.1 0.013 2.8E-07 44.6 1.9 57 3-59 93-150 (292)
25 PRK15430 putative chlorampheni 95.1 0.0092 2E-07 48.0 1.0 49 4-52 97-145 (296)
26 PRK10650 multidrug efflux syst 94.9 0.021 4.6E-07 41.5 2.4 40 11-50 67-106 (109)
27 PTZ00343 triose or hexose phos 94.8 0.014 3.1E-07 48.6 1.6 51 3-53 137-187 (350)
28 PRK11453 O-acetylserine/cystei 94.8 0.019 4.2E-07 46.1 2.2 48 7-54 87-134 (299)
29 PRK11431 multidrug efflux syst 94.5 0.032 7E-07 40.2 2.5 40 11-50 61-100 (105)
30 TIGR00803 nst UDP-galactose tr 94.2 0.016 3.4E-07 44.6 0.4 48 3-50 175-222 (222)
31 TIGR00688 rarD rarD protein. T 94.0 0.021 4.6E-07 44.5 0.8 45 8-52 98-142 (256)
32 TIGR00776 RhaT RhaT L-rhamnose 94.0 0.035 7.6E-07 45.1 2.1 51 3-53 235-289 (290)
33 PRK11689 aromatic amino acid e 93.9 0.044 9.6E-07 44.1 2.4 46 9-54 94-139 (295)
34 TIGR00817 tpt Tpt phosphate/ph 93.7 0.024 5.2E-07 45.3 0.6 49 4-52 89-137 (302)
35 PF10639 UPF0546: Uncharacteri 93.6 0.055 1.2E-06 39.9 2.4 42 9-50 71-112 (113)
36 PLN00411 nodulin MtN21 family 93.2 0.032 7E-07 47.2 0.7 53 3-55 101-159 (358)
37 COG2076 EmrE Membrane transpor 93.1 0.072 1.6E-06 39.0 2.2 42 11-52 62-103 (106)
38 PF06027 DUF914: Eukaryotic pr 92.6 0.12 2.6E-06 44.0 3.3 47 12-58 111-157 (334)
39 PRK11272 putative DMT superfam 92.3 0.074 1.6E-06 42.6 1.6 47 6-53 96-142 (292)
40 KOG2922 Uncharacterized conser 92.0 0.076 1.6E-06 45.8 1.4 53 10-62 94-146 (335)
41 PF05653 Mg_trans_NIPA: Magnes 92.0 0.078 1.7E-06 44.0 1.4 49 10-58 80-128 (300)
42 PF08449 UAA: UAA transporter 91.4 0.17 3.7E-06 40.9 2.7 53 10-62 94-146 (303)
43 TIGR00776 RhaT RhaT L-rhamnose 91.1 0.21 4.5E-06 40.6 3.0 43 13-55 93-139 (290)
44 PF00893 Multi_Drug_Res: Small 90.8 0.21 4.5E-06 34.6 2.3 33 11-43 61-93 (93)
45 KOG1580 UDP-galactose transpor 88.0 0.46 1E-05 40.4 2.8 52 4-55 265-317 (337)
46 PF04342 DUF486: Protein of un 87.6 0.34 7.3E-06 35.9 1.6 31 21-51 77-107 (108)
47 PF06800 Sugar_transport: Suga 85.2 0.75 1.6E-05 38.4 2.7 48 13-60 79-130 (269)
48 COG3169 Uncharacterized protei 85.1 0.89 1.9E-05 33.8 2.7 33 20-52 83-115 (116)
49 PF04142 Nuc_sug_transp: Nucle 84.0 1.1 2.4E-05 36.1 3.0 47 11-57 48-94 (244)
50 COG5006 rhtA Threonine/homoser 82.9 0.81 1.8E-05 38.8 1.9 47 11-57 241-287 (292)
51 KOG4510 Permease of the drug/m 80.5 0.98 2.1E-05 38.9 1.6 47 15-61 132-183 (346)
52 KOG4831 Unnamed protein [Funct 77.5 2.2 4.8E-05 32.1 2.5 42 9-51 82-124 (125)
53 KOG1441 Glucose-6-phosphate/ph 73.8 0.1 2.3E-06 44.2 -6.0 55 6-60 261-315 (316)
54 KOG4510 Permease of the drug/m 72.3 1.8 3.8E-05 37.4 1.0 53 1-55 276-328 (346)
55 KOG1442 GDP-fucose transporter 70.0 2 4.4E-05 37.1 0.9 50 20-69 295-344 (347)
56 KOG1581 UDP-galactose transpor 62.3 2.6 5.7E-05 36.4 0.1 55 2-56 263-317 (327)
57 PRK11562 nitrite transporter N 58.8 3.5 7.6E-05 34.2 0.3 32 31-62 228-259 (268)
58 KOG2765 Predicted membrane pro 56.1 7.1 0.00015 34.8 1.7 42 16-57 195-236 (416)
59 KOG4314 Predicted carbohydrate 55.7 8.6 0.00019 32.2 2.0 56 3-58 76-131 (290)
60 COG2962 RarD Predicted permeas 52.7 9.8 0.00021 32.5 2.0 41 15-55 107-147 (293)
61 PRK13499 rhamnose-proton sympo 52.6 9.7 0.00021 32.8 2.0 40 15-54 109-155 (345)
62 PF05653 Mg_trans_NIPA: Magnes 52.3 18 0.0004 30.0 3.5 51 8-58 242-298 (300)
63 PF08507 COPI_assoc: COPI asso 50.5 14 0.00031 27.0 2.3 33 21-54 75-107 (136)
64 COG4975 GlcU Putative glucose 50.5 2.1 4.5E-05 36.4 -2.4 47 15-61 95-145 (288)
65 KOG2234 Predicted UDP-galactos 50.2 22 0.00047 31.0 3.7 44 14-57 284-327 (345)
66 PF04657 DUF606: Protein of un 50.2 11 0.00024 27.9 1.7 47 3-49 87-138 (138)
67 KOG1442 GDP-fucose transporter 48.7 9.6 0.00021 33.1 1.3 37 13-49 135-171 (347)
68 PF04142 Nuc_sug_transp: Nucle 48.6 13 0.00029 29.9 2.0 31 13-43 214-244 (244)
69 KOG3912 Predicted integral mem 47.2 14 0.0003 32.3 2.0 37 17-53 123-159 (372)
70 PF06800 Sugar_transport: Suga 45.9 8.5 0.00018 32.2 0.6 47 3-49 218-268 (269)
71 PF08693 SKG6: Transmembrane a 44.7 11 0.00023 23.4 0.7 19 38-56 21-39 (40)
72 KOG1582 UDP-galactose transpor 43.9 20 0.00043 31.2 2.5 41 15-55 295-335 (367)
73 COG3238 Uncharacterized protei 41.7 19 0.00042 27.8 1.9 39 16-54 106-148 (150)
74 KOG1583 UDP-N-acetylglucosamin 41.3 8.5 0.00019 33.3 -0.1 49 8-56 270-320 (330)
75 PRK10805 formate transporter; 40.8 9.1 0.0002 31.9 -0.0 28 31-58 257-284 (285)
76 PF04304 DUF454: Protein of un 35.3 55 0.0012 21.1 3.1 35 16-50 35-69 (71)
77 COG1380 Putative effector of m 34.5 35 0.00076 25.7 2.3 33 18-50 10-49 (128)
78 PF04246 RseC_MucC: Positive r 31.5 41 0.00088 24.3 2.2 25 33-57 96-120 (135)
79 COG2962 RarD Predicted permeas 31.4 32 0.00068 29.4 1.8 50 11-60 242-291 (293)
80 PF11381 DUF3185: Protein of u 31.3 15 0.00033 24.3 -0.1 21 36-56 1-21 (59)
81 KOG1583 UDP-N-acetylglucosamin 31.3 28 0.00061 30.2 1.5 50 11-60 96-145 (330)
82 PRK09713 focB putative formate 30.9 17 0.00036 30.4 0.1 26 31-56 256-281 (282)
83 PF03899 ATP_synt_I: ATP synth 30.8 45 0.00098 21.9 2.2 39 16-54 9-47 (100)
84 PF02038 ATP1G1_PLM_MAT8: ATP1 29.6 23 0.00049 22.9 0.5 25 37-61 20-44 (50)
85 PF07010 Endomucin: Endomucin; 29.5 47 0.001 27.9 2.4 38 5-57 183-220 (259)
86 PF13994 PgaD: PgaD-like prote 24.0 27 0.00058 25.8 0.1 51 10-60 30-89 (138)
87 KOG1580 UDP-galactose transpor 23.9 16 0.00034 31.4 -1.3 44 18-61 123-166 (337)
88 COG2116 FocA Formate/nitrite f 22.5 34 0.00073 28.7 0.4 28 31-58 236-263 (265)
89 KOG2234 Predicted UDP-galactos 22.5 78 0.0017 27.6 2.6 49 10-58 122-170 (345)
90 TIGR02840 spore_YtaF putative 21.4 32 0.00069 27.1 0.0 42 9-51 36-80 (206)
91 PF15102 TMEM154: TMEM154 prot 20.5 73 0.0016 24.7 1.8 25 36-60 65-89 (146)
92 KOG2766 Predicted membrane pro 20.2 62 0.0013 28.0 1.5 42 16-57 114-155 (336)
93 TIGR00908 2A0305 ethanolamine 20.1 91 0.002 26.2 2.5 47 11-57 384-434 (442)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.16 E-value=1.1e-11 Score=104.25 Aligned_cols=62 Identities=34% Similarity=0.902 Sum_probs=58.1
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK 62 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~ 62 (125)
++++||+.+|+|.++.|++++++++++|||++++.+++|+++|+.|+|++.|+|.||.+.++
T Consensus 277 v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~ 338 (358)
T PLN00411 277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL 338 (358)
T ss_pred HhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 57899999999999999999999999999999999999999999999999999998865543
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.06 E-value=3.9e-07 Score=72.79 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=53.0
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
+++.||+..+++.-+.++++++++++++||++++.+++|+++++.|+++..+.|.++.
T Consensus 242 l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 242 LGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 4688999999999999999999999999999999999999999999999887665443
No 3
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.05 E-value=1.2e-06 Score=70.38 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=54.1
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhh
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~ 61 (125)
+++.||..+|+|.-+.+++++++++++|||+++.-+++|+++|+.|.....|...+|.+-+
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~ 290 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK 290 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3678999999999999999999999999999999999999999999998877766654443
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.97 E-value=2.2e-06 Score=68.84 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=51.4
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
++.||..++.+.-+.|++++++++++|||++++.+++|+++|+.|+++..|+++
T Consensus 237 ~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 237 GRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 567899999999999999999999999999999999999999999999999886
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.93 E-value=2.8e-06 Score=68.23 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=50.2
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
+++.||..+++|.-+.|++++++++++|||+++..+++|+++|+.|+++..|..
T Consensus 236 l~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 236 ILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 367899999999999999999999999999999999999999999999986644
No 6
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.79 E-value=8.1e-06 Score=55.05 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.9
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL 51 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl 51 (125)
++.+|..++++..+.+++++++++++++|+++..+++|.++++.|+++++
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999864
No 7
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.68 E-value=2.8e-05 Score=61.83 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=46.2
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
++.||..++.+.-+.+++++++++++|||+++..+++|+++|+.|+++.
T Consensus 233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 5778999999999999999999999999999999999999999999863
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.65 E-value=1.3e-05 Score=64.11 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=50.5
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
++.||..++++.-+.+++++++++++++|+++..+++|+++|+.|+++..|.+.
T Consensus 235 ~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 235 RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999999999999999999999999887654
No 9
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.46 E-value=5e-05 Score=56.25 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=41.9
Q ss_pred ccCceeeechhhHHHHHHHHHHHH--Hhhhhhhhhhhcchhhhhhhhhheeecchh
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSF--ILAEKIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~l--fLgE~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
+.++..+..+.-+..++++++++. +|+|++++.+++|.++|++|++++.+++.+
T Consensus 71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 445555555555555667777774 899999999999999999999999876665
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.37 E-value=6e-05 Score=62.72 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=49.4
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
+++.+|+-.++++.+.++++++++++++||++++-+++|.++++.|++++.+-
T Consensus 297 l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 297 LGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999987654
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.35 E-value=6.7e-05 Score=60.35 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=46.6
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL 51 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl 51 (125)
+++.||..+|.|.-+.++++++++++++||++++.+++|.++|+.|+-+..
T Consensus 234 ~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 234 ATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999987776654
No 12
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.34 E-value=0.00012 Score=56.05 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=42.5
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
.+.+..-+.++++++++++++||+|++++-..+|.+||++|..++..
T Consensus 93 as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 93 ASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred cceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 45667778899999999999999999999999999999999988764
No 13
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.18 E-value=0.00015 Score=50.88 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=45.4
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchh
Q 033196 6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
|..+++-..+.++|++++++++++|.++...++|.+++.+|+.++.|.+..
T Consensus 60 ~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 60 PALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345666677899999999999999999999999999999999999997754
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.95 E-value=0.00042 Score=53.24 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=44.2
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhh
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGL 47 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~Gl 47 (125)
+++.||..++.+.-+.+++++++++++++|+++..+++|.++++.|+
T Consensus 213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 213 LTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 36778999999999999999999999999999999999999999986
No 15
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.79 E-value=0.00067 Score=48.44 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=48.3
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
+++.+|+..++-..+-.+++.++++++++|+++..+++|.++.+.|.++..|
T Consensus 102 i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 102 IKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 4678899999999999999999999999999999999999999999998765
No 16
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.56 E-value=0.0017 Score=46.54 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196 15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL 51 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl 51 (125)
++.++++++++++++|++++.+++|.++|++|+.++.
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999997653
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.32 E-value=0.0016 Score=49.44 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=47.3
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
++.++...+++.-+.+++++++++++++|.++..+++|+++|+.|.++....
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 237 RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4567888888888999999999999999999999999999999999998876
No 18
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.22 E-value=0.0042 Score=52.72 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=53.0
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhhccCCCcC
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEP 69 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~~~~~~~~ 69 (125)
..+|.+..+=.-.+..++.+++.++.|+.+++-.++|-++|++|+.+..+...++.++.+++..+..
T Consensus 256 ~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~~~~~~~ 322 (334)
T PF06027_consen 256 MSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRNERKQEL 322 (334)
T ss_pred hCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchhhccccc
Confidence 4566666666666678889999999999999999999999999999999988877665554333333
No 19
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.18 E-value=0.0037 Score=46.18 Aligned_cols=44 Identities=11% Similarity=0.325 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
++.-+..+.+++++.++++|++++.+++|-++|++|+..+-...
T Consensus 62 vw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 62 LWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 35567889999999999999999999999999999998874433
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.17 E-value=0.003 Score=50.26 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=43.9
Q ss_pred CceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 5 GPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 5 GPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
....++.+....+++++++++++++|.++..+++|.++++.|++++.+.
T Consensus 88 ~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 88 DVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred ChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4455677788899999999999999999999999999999999998874
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.92 E-value=0.0038 Score=47.97 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=45.5
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
..++..+++..-+.|++++++++++++|+++..+++|.++.+.|+.++.+.
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 345667788888999999999999999999999999999999999998754
No 22
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.43 E-value=0.011 Score=42.77 Aligned_cols=42 Identities=10% Similarity=0.312 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
+.=+..+.++++++++++|++++.+++|..+|++|+..+=..
T Consensus 63 w~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 444678889999999999999999999999999999987443
No 23
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.35 E-value=0.0069 Score=48.98 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=51.9
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
++-||...++-..+.-+++.+++.+++++++++.+++|.++++.|+.+..+.|.|.
T Consensus 247 ~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 247 KKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 56789999999999999999999999999999999999999999999999888765
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.11 E-value=0.013 Score=44.57 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=48.3
Q ss_pred ccCceeeechhhHHHHHHHHHHH-HHhhhhhhhhhhcchhhhhhhhhheeecchhhhh
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGS-FILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYE 59 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~-lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~ 59 (125)
..++..+++..-..+++++++++ ++++|.++...++|.++.+.|++++.+.......
T Consensus 93 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~ 150 (292)
T COG0697 93 YTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI 150 (292)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh
Confidence 34556667777889999999997 7779999999999999999999999998776543
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.06 E-value=0.0092 Score=48.00 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=43.3
Q ss_pred cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
.+..-+++..-..|++++++++++++|.++..+++|.++.+.|+.++++
T Consensus 97 ~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 97 HHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3445566777789999999999999999999999999999999999875
No 26
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=94.86 E-value=0.021 Score=41.50 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
++.=+..+.+++++.++++|++++.+++|-++|+.|+..+
T Consensus 67 vW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 67 LWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4555778889999999999999999999999999998764
No 27
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=94.84 E-value=0.014 Score=48.61 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=45.9
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
...+.+..+..-+.|++++++++++++|.++...++|-++++.|+.+...+
T Consensus 137 ~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 137 LGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 345677888888999999999999999999999999999999999998753
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=94.80 E-value=0.019 Score=46.12 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=42.8
Q ss_pred eeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 7 VFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 7 vfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
..+++...+.++++.++++++++|.++..+++|.++.++|+++++++.
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~ 134 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS 134 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc
Confidence 355666778899999999999999999999999999999999999763
No 29
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.45 E-value=0.032 Score=40.23 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
++.=+..+.+++++.++++|++++.+++|-.+|+.|+..+
T Consensus 61 vW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 61 VWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 4555778889999999999999999999999999998765
No 30
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.17 E-value=0.016 Score=44.64 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=40.6
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
..||+..++-.-+..+++++++++++++++++...+|+.+++.|+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 175 YADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 345555566667788999999999999999999999999999998863
No 31
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=94.01 E-value=0.021 Score=44.51 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=39.3
Q ss_pred eeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 8 FVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 8 fvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
-+++..-..|++++++++++++|+++..+++|.++.++|+.++..
T Consensus 98 ~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 98 EVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556679999999999999999999999999999999987764
No 32
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=93.96 E-value=0.035 Score=45.05 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=45.6
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhh----cchhhhhhhhhheeec
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGA----LGAVVIVIGLYAVLWG 53 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsi----iGavLIi~GlYlvlwg 53 (125)
..|+...++..-+.+++++++++++|+|..+..++ +|.++|+.|..+.-.+
T Consensus 235 ~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 235 KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 56788888889999999999999999999999999 9999999998876443
No 33
>PRK11689 aromatic amino acid exporter; Provisional
Probab=93.86 E-value=0.044 Score=44.05 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=40.9
Q ss_pred eechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 9 VTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 9 vs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
+++..-+.|++++++++++++|.++..+++|.++-++|++++++..
T Consensus 94 a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~ 139 (295)
T PRK11689 94 VGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGD 139 (295)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCC
Confidence 3455567899999999999999999999999999999999999764
No 34
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.66 E-value=0.024 Score=45.34 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=43.1
Q ss_pred cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
..+.+.++..-++|++++++++++++|+++...++|.+++++|+.+...
T Consensus 89 ~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 137 (302)
T TIGR00817 89 VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD 137 (302)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence 3456677788889999999999999999999999999999999987653
No 35
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.63 E-value=0.055 Score=39.85 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=36.2
Q ss_pred eechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 9 VTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 9 vs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
+.+.|-+..+||++.++++.+|......++|.++|+.|+.++
T Consensus 71 vPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 71 VPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred ehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 345677889999999988888888888999999999999876
No 36
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=93.18 E-value=0.032 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=47.0
Q ss_pred ccCceeeechhhHHHHHHHHHHHHH------hhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFI------LAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lf------LgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
-..|..+++.....|+++++++++| ++|.++...++|.++-++|+.++++.++
T Consensus 101 ~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g 159 (358)
T PLN00411 101 YSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG 159 (358)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence 3467788899999999999999999 6999999999999999999998886554
No 37
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.08 E-value=0.072 Score=39.03 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
++.=+..+.+++.++++++|++++..++|-.+|++|+...=+
T Consensus 62 iW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 62 IWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 445567788899999999999999999999999999876543
No 38
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=92.61 E-value=0.12 Score=43.98 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
-+-...+++.+++++||++..++.+++|.++.++|+.++.+......
T Consensus 111 L~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~ 157 (334)
T PF06027_consen 111 LDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSG 157 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccccc
Confidence 34467889999999999999999999999999999999999986543
No 39
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=92.30 E-value=0.074 Score=42.61 Aligned_cols=47 Identities=9% Similarity=0.072 Sum_probs=40.9
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
+..+++..-+.++++++++.+ ++|+++..+++|.++.++|++++.|+
T Consensus 96 a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 96 SGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 334567778899999999986 79999999999999999999999875
No 40
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.076 Score=45.76 Aligned_cols=53 Identities=38% Similarity=0.515 Sum_probs=45.0
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196 10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK 62 (125)
Q Consensus 10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~ 62 (125)
+.---+++++.++++++||.|.+++-.++|-++.++|-++...--.+|++...
T Consensus 94 tPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t 146 (335)
T KOG2922|consen 94 TPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIES 146 (335)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccccc
Confidence 33445788999999999999999999999999999999988877777665544
No 41
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=91.97 E-value=0.078 Score=44.03 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=39.9
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
+.+.-++.++.++++.++|+|+++.-.++|.++++.|..++..--.+++
T Consensus 80 ~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~ 128 (300)
T PF05653_consen 80 APLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEE 128 (300)
T ss_pred HHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCC
Confidence 3344567788999999999999999999999999999987665444443
No 42
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=91.38 E-value=0.17 Score=40.91 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=45.8
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196 10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK 62 (125)
Q Consensus 10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~ 62 (125)
.++.-..++++++++.++++++.+...+++.+++.+|+.++..++.++.+...
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 35666778999999999999999999999999999999999998876655443
No 43
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=91.08 E-value=0.21 Score=40.59 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhh----hcchhhhhhhhhheeecch
Q 033196 13 SPLMMIIVAIMGSFILAEKIYVGG----ALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 13 ~PL~~V~~aIl~~lfLgE~L~lGs----iiGavLIi~GlYlvlwgK~ 55 (125)
+-++++++++++.++++|..+..+ ++|.++++.|.+++.+.+.
T Consensus 93 ~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~ 139 (290)
T TIGR00776 93 TGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKD 139 (290)
T ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccc
Confidence 447778999999999999999999 9999999999999977753
No 44
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.75 E-value=0.21 Score=34.56 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVI 43 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLI 43 (125)
++.=+.++.+++++.++++|++++.+++|-.+|
T Consensus 61 vw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 61 VWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 455577889999999999999999999997765
No 45
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.95 E-value=0.46 Score=40.42 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=45.9
Q ss_pred cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhh-eeecch
Q 033196 4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYA-VLWGKY 55 (125)
Q Consensus 4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYl-vlwgK~ 55 (125)
-||+-+|+-.--.-.|+++.++++++.+++-.+++|.++++.|+.. +..||.
T Consensus 265 FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 265 FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 4888899888888899999999999999999999999999999876 445654
No 46
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=87.56 E-value=0.34 Score=35.85 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196 21 AIMGSFILAEKIYVGGALGAVVIVIGLYAVL 51 (125)
Q Consensus 21 aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl 51 (125)
+.++.++++|++.+..+.|.++++.++|.+.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 7788999999999999999999999999764
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=85.23 E-value=0.75 Score=38.37 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhh----hcchhhhhhhhhheeecchhhhhh
Q 033196 13 SPLMMIIVAIMGSFILAEKIYVGG----ALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 13 ~PL~~V~~aIl~~lfLgE~L~lGs----iiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
.-++.+.+++++.++|||--+... +++-++|++|.++..|.+.++.+.
T Consensus 79 tg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~ 130 (269)
T PF06800_consen 79 TGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKS 130 (269)
T ss_pred hhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 346788899999999999554443 336688999999999988877654
No 48
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.07 E-value=0.89 Score=33.79 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196 20 VAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52 (125)
Q Consensus 20 ~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw 52 (125)
-+.++.++|+|++.|..+.|+.+|..|+|+...
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999998764
No 49
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=84.00 E-value=1.1 Score=36.10 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
+..-+-+++++++++++|+.+++..++++-++++.|+.++-.+....
T Consensus 48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 44457789999999999999999999999999999999998887765
No 50
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=82.90 E-value=0.81 Score=38.84 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
.-.-+-+.+.++.|+++|||.+++.+.+|-++|+.+.-=..|.-+|+
T Consensus 241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 34457899999999999999999999999999998876555544443
No 51
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=80.47 E-value=0.98 Score=38.92 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee-----ecchhhhhhh
Q 033196 15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL-----WGKYKEYEEN 61 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl-----wgK~kE~~~~ 61 (125)
.+++|+++++++||+|+.+.-..+|..+-+.|+.+.. .|...+.++.
T Consensus 132 ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~ 183 (346)
T KOG4510|consen 132 SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDS 183 (346)
T ss_pred cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccc
Confidence 3689999999999999999999999999999988754 4544444333
No 52
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=77.49 E-value=2.2 Score=32.10 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=34.7
Q ss_pred eechhhHHHHHHHHHHHHHhhhhhhhhh-hcchhhhhhhhhhee
Q 033196 9 VTAFSPLMMIIVAIMGSFILAEKIYVGG-ALGAVVIVIGLYAVL 51 (125)
Q Consensus 9 vs~F~PL~~V~~aIl~~lfLgE~L~lGs-iiGavLIi~GlYlvl 51 (125)
+.+-+.+...|+++++.. |||.+--+. +.|..+++.|.++++
T Consensus 82 vpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 82 VPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred eeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence 445677889999999987 888887775 779999999998875
No 53
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=73.84 E-value=0.1 Score=44.21 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=41.9
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhh
Q 033196 6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
|+-=++..-+=.+++.+.+++++++++++-+++|.++-+.|+++.-|.|.++++.
T Consensus 261 alT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 261 ALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred chhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3333333333334456778899999999999999999999999999999887654
No 54
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=72.25 E-value=1.8 Score=37.39 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=42.6
Q ss_pred CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
++|-||+ |+-.=-.++++.++..+|+++-.++-+++|++.|+.-...+...|.
T Consensus 276 iErAGpv--aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 276 IERAGPV--AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred hhccCCe--ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 3567886 4455568899999999999999999999999999977766664443
No 55
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.01 E-value=2 Score=37.09 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhhccCCCcC
Q 033196 20 VAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEP 69 (125)
Q Consensus 20 ~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~~~~~~~~ 69 (125)
-++++..+++|..+.--+-|-++|..|-.+..|.|..|++++.++..|..
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~~ 344 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPAT 344 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCccc
Confidence 37899999999999999999999999999999999999998877655543
No 56
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=62.32 E-value=2.6 Score=36.38 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=44.3
Q ss_pred cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchh
Q 033196 2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
++=||+--++-.-..-+++++++.+.+|.++++-+.+|..+++.|+|+=..-|.+
T Consensus 263 ~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 263 ERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 3445555555555666788999999999999999999999999999987766666
No 57
>PRK11562 nitrite transporter NirC; Provisional
Probab=58.83 E-value=3.5 Score=34.17 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=26.8
Q ss_pred hhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196 31 KIYVGGALGAVVIVIGLYAVLWGKYKEYEENK 62 (125)
Q Consensus 31 ~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~ 62 (125)
+.++|.++|+.+++..+|.++.++.++.++.+
T Consensus 228 pvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~ 259 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYATPKANRPVAAK 259 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCchhhh
Confidence 46789999999999999999988887766654
No 58
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=56.12 E-value=7.1 Score=34.76 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 16 MMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 16 ~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
+=+|+.+++.+|.+|.+++..+++-.+-++|+.++..++.+.
T Consensus 195 Ss~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 195 SSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred chHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 446888999999999999999999999999999999998876
No 59
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=55.74 E-value=8.6 Score=32.20 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
|..|+-++.-.--.-.|+-+++++.|++.+.--.++.+++-+.|+....+......
T Consensus 76 ~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 76 KISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred hcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 44455555555566788999999999999999999999999999999888765443
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=52.72 E-value=9.8 Score=32.47 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
+.|++.+++|.+||+|.++-.+.+--++-.+|+..-.|-.+
T Consensus 107 InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 107 INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 56788899999999999999999988888888887777654
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=52.56 E-value=9.7 Score=32.79 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhh-------hhhhhcchhhhhhhhhheeecc
Q 033196 15 LMMIIVAIMGSFILAEKI-------YVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L-------~lGsiiGavLIi~GlYlvlwgK 54 (125)
++.+++++++.+++||=- ..-.++|-+++++|+++..+.-
T Consensus 109 l~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 109 ITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777888888888522 2235788899999999999843
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=52.28 E-value=18 Score=30.01 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=38.1
Q ss_pred eeechhhHHHHHHHHHHHHHhhhhhhh------hhhcchhhhhhhhhheeecchhhh
Q 033196 8 FVTAFSPLMMIIVAIMGSFILAEKIYV------GGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 8 fvs~F~PL~~V~~aIl~~lfLgE~L~l------GsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
.+++|.-+-+.++.+-+.++++|--+. +-+.|-++++.|++++...|.+|.
T Consensus 242 V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 242 VVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred EEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 445666666777888888888875443 347788999999999988777664
No 63
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=50.50 E-value=14 Score=26.96 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 21 AIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 21 aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
.++|.+.+++ --+..++|..+++.|+..+..+-
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~ 107 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGF 107 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777 44566778888888877666444
No 64
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=50.49 E-value=2.1 Score=36.37 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc----chhhhhhhhhheeecchhhhhhh
Q 033196 15 LMMIIVAIMGSFILAEKIYVGGAL----GAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L~lGsii----GavLIi~GlYlvlwgK~kE~~~~ 61 (125)
.|.+-+.+++++++||=-+..+++ --++|+.|+|+..|.++.+.+++
T Consensus 95 ~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~ 145 (288)
T COG4975 95 MQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEE 145 (288)
T ss_pred hhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccccc
Confidence 367788999999999977776643 33789999999999887544433
No 65
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=50.18 E-value=22 Score=31.02 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 14 PLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 14 PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
-+.++++++.++.+++-.+++--.+|..+++.-.++....+.++
T Consensus 284 s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 284 SVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 36889999999999999999999999999999999888555555
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=50.18 E-value=11 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=30.4
Q ss_pred ccCceeeechhhHH-HHHHHHHHHH----Hhhhhhhhhhhcchhhhhhhhhh
Q 033196 3 KRGPVFVTAFSPLM-MIIVAIMGSF----ILAEKIYVGGALGAVVIVIGLYA 49 (125)
Q Consensus 3 kkGPvfvs~F~PL~-~V~~aIl~~l----fLgE~L~lGsiiGavLIi~GlYl 49 (125)
|.|+.....+.=.. ++.+.+++.+ .-..++++.+++|.+++++|+++
T Consensus 87 ~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 87 RLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44554444444333 3344556665 34578899999999999999874
No 67
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.68 E-value=9.6 Score=33.06 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhh
Q 033196 13 SPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYA 49 (125)
Q Consensus 13 ~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYl 49 (125)
.-|.++|+.++.+++|++.-+.+-+.+-.+|+.|+.+
T Consensus 135 RsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 135 RSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred cchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 4578999999999999999999999999999999865
No 68
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=48.59 E-value=13 Score=29.87 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcchhhh
Q 033196 13 SPLMMIIVAIMGSFILAEKIYVGGALGAVVI 43 (125)
Q Consensus 13 ~PL~~V~~aIl~~lfLgE~L~lGsiiGavLI 43 (125)
.-+++++++++++++++.++++..++|++++
T Consensus 214 ~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 214 TAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 4578899999999999999999999998764
No 69
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=47.22 E-value=14 Score=32.33 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196 17 MIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG 53 (125)
Q Consensus 17 ~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg 53 (125)
.+|+.+++.-||+.++...+++|...+..|+..+-..
T Consensus 123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 6889999999999999999999999999999887654
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=45.86 E-value=8.5 Score=32.17 Aligned_cols=47 Identities=34% Similarity=0.442 Sum_probs=34.8
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhh----hcchhhhhhhhhh
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGG----ALGAVVIVIGLYA 49 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGs----iiGavLIi~GlYl 49 (125)
+.|-.-.-.+.=++++++++.+.++|+|.-+-.. ++|.+||+.|..+
T Consensus 218 ~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 218 KNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3444455566778999999999999999987553 5677777777543
No 71
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.71 E-value=11 Score=23.36 Aligned_cols=19 Identities=32% Similarity=0.887 Sum_probs=13.0
Q ss_pred cchhhhhhhhhheeecchh
Q 033196 38 LGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 38 iGavLIi~GlYlvlwgK~k 56 (125)
+|.++++.|+++++|.+.+
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4566777788888776653
No 72
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=43.93 E-value=20 Score=31.23 Aligned_cols=41 Identities=10% Similarity=0.301 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196 15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~ 55 (125)
..=..+.+++++++..+++.--.-|+++|+.|+|+=++.|.
T Consensus 295 aRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 295 ARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 33456789999999999999999999999999999999883
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.71 E-value=19 Score=27.76 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhh----hhhhhhhhcchhhhhhhhhheeecc
Q 033196 16 MMIIVAIMGSFILA----EKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 16 ~~V~~aIl~~lfLg----E~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
|++.+.+++.|=+. .++++..++|.+++++|.++.-+.+
T Consensus 106 Qli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 106 QLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred HHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 44555666666666 7788889999999999976665543
No 74
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=41.32 E-value=8.5 Score=33.26 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=39.2
Q ss_pred eeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe--eecchh
Q 033196 8 FVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV--LWGKYK 56 (125)
Q Consensus 8 fvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv--lwgK~k 56 (125)
-+++--.|.=.+..+++.+.+..++++-.++|+++++.|-.++ .|++.+
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3444455666778889999999999999999999999996554 587777
No 75
>PRK10805 formate transporter; Provisional
Probab=40.77 E-value=9.1 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.1
Q ss_pred hhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 31 KIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 31 ~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
+.++|.++|+.+++...|.++..+.++.
T Consensus 257 pvtlGNiVGG~v~vg~~y~~~~~~~~~~ 284 (285)
T PRK10805 257 PVTIGNIIGGGLLVGLTYWVIYLRGNDH 284 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 4578999999999999999998887764
No 76
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=35.34 E-value=55 Score=21.07 Aligned_cols=35 Identities=20% Similarity=0.530 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196 16 MMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV 50 (125)
Q Consensus 16 ~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv 50 (125)
++..+..++.+++.+++.+.-+++++.++...|++
T Consensus 35 ~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 35 MMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 34445556668888888888888888776666654
No 77
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=34.54 E-value=35 Score=25.65 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhhh-------hhhcchhhhhhhhhhe
Q 033196 18 IIVAIMGSFILAEKIYV-------GGALGAVVIVIGLYAV 50 (125)
Q Consensus 18 V~~aIl~~lfLgE~L~l-------GsiiGavLIi~GlYlv 50 (125)
=++.+++..++||-+.- ||++|.++.+..+++=
T Consensus 10 q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~~ 49 (128)
T COG1380 10 QLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLALK 49 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhC
Confidence 35678888888988765 7999999888777653
No 78
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.52 E-value=41 Score=24.29 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=13.7
Q ss_pred hhhhhcchhhhhhhhhheeecchhh
Q 033196 33 YVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 33 ~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
.+.+++++++.++.-|+++|...+.
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666665555555555544443
No 79
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=31.39 E-value=32 Score=29.44 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=41.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
.++=+.|.+-.+++.++++|+++.-+.+.=++|-.|+.++.|..-...++
T Consensus 242 ~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 242 FLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455677778999999999999999999999999999999877655443
No 80
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.29 E-value=15 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.1
Q ss_pred hhcchhhhhhhhhheeecchh
Q 033196 36 GALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 36 siiGavLIi~GlYlvlwgK~k 56 (125)
.++|-+|++.|+.+..||-..
T Consensus 1 kiigi~Llv~GivLl~~G~~~ 21 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQA 21 (59)
T ss_pred CeeeehHHHHHHHHHHhhhhh
Confidence 368999999999999999754
No 81
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=31.28 E-value=28 Score=30.17 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
+|.--+++.++++++++++.+-++.++..-+++-+|..++...++++.+.
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34455678899999999999999999999999999999999999988766
No 82
>PRK09713 focB putative formate transporter; Provisional
Probab=30.95 E-value=17 Score=30.41 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.7
Q ss_pred hhhhhhhcchhhhhhhhhheeecchh
Q 033196 31 KIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 31 ~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
+.++|.++|+.+++..+|.+...|.+
T Consensus 256 pvtLGNiVGG~v~vg~~y~~~~~~~~ 281 (282)
T PRK09713 256 PVMLGNIIGGAVLVSMCYRAIYLRQE 281 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55789999999999999988886653
No 83
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=30.82 E-value=45 Score=21.91 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 16 MMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 16 ~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
..++.++..+++.+.+..+|-++|+++.+...++..|.=
T Consensus 9 l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 9 LLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666689999999999999999888887665
No 84
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=29.65 E-value=23 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=18.7
Q ss_pred hcchhhhhhhhhheeecchhhhhhh
Q 033196 37 ALGAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 37 iiGavLIi~GlYlvlwgK~kE~~~~ 61 (125)
++.++|.++|+.+++.+|-+-...+
T Consensus 20 i~A~vlfi~Gi~iils~kckCk~~q 44 (50)
T PF02038_consen 20 IFAGVLFILGILIILSGKCKCKFNQ 44 (50)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCccccCCCC
Confidence 5677888999999888887654333
No 85
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=29.48 E-value=47 Score=27.94 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=25.8
Q ss_pred CceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 5 GPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 5 GPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
-|.|.+++.|+.++...|-.+ ++.+.|||=++|.+.-.
T Consensus 183 spS~S~vilpvvIaliVitl~---------------vf~LvgLyr~C~k~dPg 220 (259)
T PF07010_consen 183 SPSYSSVILPVVIALIVITLS---------------VFTLVGLYRMCWKTDPG 220 (259)
T ss_pred CccccchhHHHHHHHHHHHHH---------------HHHHHHHHHHhhcCCCC
Confidence 578899998875544443332 24567999999987644
No 86
>PF13994 PgaD: PgaD-like protein
Probab=24.02 E-value=27 Score=25.80 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=28.5
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhhhh---------hcchhhhhhhhhheeecchhhhhh
Q 033196 10 TAFSPLMMIIVAIMGSFILAEKIYVGG---------ALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 10 s~F~PL~~V~~aIl~~lfLgE~L~lGs---------iiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
-+|.|+.+.+.-+++.-...+.++++. .-..++++.+..+++|++.+..+-
T Consensus 30 yL~~pl~~ll~~ll~~~~~~~~~~~~~~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf 89 (138)
T PF13994_consen 30 YLWRPLLTLLAWLLGLHLFYPQMSLGGFLSSLNTLQIYLLIALVNAVILILWAKYNRLRF 89 (138)
T ss_pred HHHHHHHHHHHHHHccccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555444444443332222 223366778888999999875433
No 87
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=23.93 E-value=16 Score=31.39 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhh
Q 033196 18 IIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 18 V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~ 61 (125)
|=++++|++|.+.+-||....=-++|+.|+-++++...|-...+
T Consensus 123 IPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e 166 (337)
T KOG1580|consen 123 IPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE 166 (337)
T ss_pred cceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc
Confidence 34578999999999999999999999999999998766544433
No 88
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=22.50 E-value=34 Score=28.75 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.4
Q ss_pred hhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 31 KIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 31 ~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
+.++|.++|+.+++.-.|..+..|....
T Consensus 236 pv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 236 PVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHHHhchhcchhhhhHHHHHhccccccc
Confidence 5688999999999999999888776544
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=22.46 E-value=78 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=40.2
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196 10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~ 58 (125)
.+..-+-++.|+++..++|++.++.-++.--++..+|+-++-++.....
T Consensus 122 qVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 122 QVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3445578899999999999999999998888889999998885554433
No 90
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=21.40 E-value=32 Score=27.13 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=23.9
Q ss_pred eechhhHHHHHHHHHHHHHhhhhh-h-hhhhcc-hhhhhhhhhhee
Q 033196 9 VTAFSPLMMIIVAIMGSFILAEKI-Y-VGGALG-AVVIVIGLYAVL 51 (125)
Q Consensus 9 vs~F~PL~~V~~aIl~~lfLgE~L-~-lGsiiG-avLIi~GlYlvl 51 (125)
.+.|+-+.+.++..++..+- +-+ . +..++| .+|++.|++.+.
T Consensus 36 ig~~~~~~~~lg~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 36 IAVISGLFIFISMLLGKFLA-KFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543 222 2 344554 477788999886
No 91
>PF15102 TMEM154: TMEM154 protein family
Probab=20.46 E-value=73 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=16.5
Q ss_pred hhcchhhhhhhhhheeecchhhhhh
Q 033196 36 GALGAVVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 36 siiGavLIi~GlYlvlwgK~kE~~~ 60 (125)
.+++++|++..++++..-|+|..+.
T Consensus 65 ~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 65 LVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHHheeEEeecccCC
Confidence 3556677777777777777665544
No 92
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=20.19 E-value=62 Score=28.03 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 16 MMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 16 ~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
....+.+++|+||+-.-++-.+.|-++-+.|+.+++...--.
T Consensus 114 aip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 114 AIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred hhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 345678999999999999999999999999999999876544
No 93
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=20.10 E-value=91 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhh--hhc--chhhhhhhhhheeecchhh
Q 033196 11 AFSPLMMIIVAIMGSFILAEKIYVG--GAL--GAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 11 ~F~PL~~V~~aIl~~lfLgE~L~lG--sii--GavLIi~GlYlvlwgK~kE 57 (125)
-+.|+.+++..++..+++--.+... .++ -.+.++.++|.++|.+.+-
T Consensus 384 p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 434 (442)
T TIGR00908 384 PGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHL 434 (442)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchh
Confidence 3346777777776665554443332 222 3567778888888866543
Done!