Query 033196
Match_columns 125
No_of_seqs 128 out of 599
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.0 1E-06 3.5E-11 64.8 1.0 53 2-54 52-105 (137)
2 3b5d_A Multidrug transporter E 97.3 0.00012 3.9E-09 51.2 2.3 43 12-54 63-105 (110)
3 2jwa_A Receptor tyrosine-prote 39.8 9.5 0.00033 23.1 0.9 20 41-60 23-42 (44)
4 2jp3_A FXYD domain-containing 38.2 7.9 0.00027 25.5 0.4 31 32-62 17-48 (67)
5 2zxe_G FXYD10, phospholemman-l 35.6 7.3 0.00025 26.1 -0.1 30 32-61 19-49 (74)
6 3b8e_G Na+/K+ ATPase gamma sub 29.0 14 0.00048 20.6 0.3 19 37-55 10-28 (29)
7 3l1l_A Arginine/agmatine antip 26.7 30 0.001 27.1 2.0 46 12-57 386-431 (445)
8 3kcu_A Probable formate transp 26.4 13 0.00046 29.7 -0.1 27 30-56 256-282 (285)
9 4fc4_A Nitrite transporter NIR 23.1 17 0.00058 28.8 -0.1 26 31-56 228-253 (261)
10 2jo1_A Phospholemman; FXYD1, N 22.3 16 0.00053 24.4 -0.4 25 37-61 22-46 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.03 E-value=1e-06 Score=64.79 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=36.9
Q ss_pred cccCceeeech-hhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 2 QKRGPVFVTAF-SPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 2 ~kkGPvfvs~F-~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
++.++..+..+ .-+.+++++++++++|+|++++.+++|.++|++|++++.+.+
T Consensus 52 k~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44566667666 789999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.25 E-value=0.00012 Score=51.20 Aligned_cols=43 Identities=9% Similarity=0.299 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196 12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK 54 (125)
Q Consensus 12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK 54 (125)
+.-+.+++++++++++++|++++.+++|.++|+.|++++-+..
T Consensus 63 ~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3667899999999999999999999999999999999986643
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=39.82 E-value=9.5 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=11.4
Q ss_pred hhhhhhhhheeecchhhhhh
Q 033196 41 VVIVIGLYAVLWGKYKEYEE 60 (125)
Q Consensus 41 vLIi~GlYlvlwgK~kE~~~ 60 (125)
+++++|+.+++|-+.+..++
T Consensus 23 l~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhheehhhhhc
Confidence 34555666666666655443
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=38.22 E-value=7.9 Score=25.53 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=22.3
Q ss_pred hhhhh-hcchhhhhhhhhheeecchhhhhhhh
Q 033196 32 IYVGG-ALGAVVIVIGLYAVLWGKYKEYEENK 62 (125)
Q Consensus 32 L~lGs-iiGavLIi~GlYlvlwgK~kE~~~~~ 62 (125)
|-.|. ++.++|.++|+.+.+++|-+.....+
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kcrCk~~qk 48 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKCKCRRNHT 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCC
T ss_pred heecchhhHHHHHHHHHHHHHcCcccccCCCC
Confidence 33443 56788999999999999877654433
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=35.63 E-value=7.3 Score=26.15 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=18.1
Q ss_pred hhhhh-hcchhhhhhhhhheeecchhhhhhh
Q 033196 32 IYVGG-ALGAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 32 L~lGs-iiGavLIi~GlYlvlwgK~kE~~~~ 61 (125)
|-.|. ++.++|.++|+.+.+++|-|-....
T Consensus 19 LRigGLifA~vLfi~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 19 LRVVGLIVAAVLCVIGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred heeccchhHHHHHHHHHHHHHcCccccCCCC
Confidence 33443 5678899999999999997754433
No 6
>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} PDB: 3kdp_G*
Probab=28.98 E-value=14 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.0
Q ss_pred hcchhhhhhhhhheeecch
Q 033196 37 ALGAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 37 iiGavLIi~GlYlvlwgK~ 55 (125)
++.+++.+.|+.+.+++|-
T Consensus 10 i~a~vlf~~Gi~iilS~kc 28 (29)
T 3b8e_G 10 IFAALAFIVGLIIILSKRL 28 (29)
T ss_dssp GGGGSSSTTTTTTSSCSSC
T ss_pred hHHHHHHHHHHHHHHhccc
Confidence 6678889999999999874
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=26.71 E-value=30 Score=27.06 Aligned_cols=46 Identities=4% Similarity=-0.160 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196 12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57 (125)
Q Consensus 12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE 57 (125)
+.|+..+++.++..+.+-..-....+.|.++++.|+.++.+.+++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555554444443322212234557777778877666655443
No 8
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=26.44 E-value=13 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=20.1
Q ss_pred hhhhhhhhcchhhhhhhhhheeecchh
Q 033196 30 EKIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 30 E~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
=+.++|.++|+.+++..+|..+..|..
T Consensus 256 ipvtlGNiIGG~~fvgl~y~~~~~~~~ 282 (285)
T 3kcu_A 256 IPVTIGNIIGGGLLVGLTYWVIYLREN 282 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 355688899999999998887776543
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=23.07 E-value=17 Score=28.77 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=18.4
Q ss_pred hhhhhhhcchhhhhhhhhheeecchh
Q 033196 31 KIYVGGALGAVVIVIGLYAVLWGKYK 56 (125)
Q Consensus 31 ~L~lGsiiGavLIi~GlYlvlwgK~k 56 (125)
+.++|.++|+.+++..+|.....|..
T Consensus 228 pvtlGNiiGG~~fvgl~y~~~~~~~~ 253 (261)
T 4fc4_A 228 WVTLGNTLSGVVFMGLGYWYATPKSE 253 (261)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 56788899999998888877765543
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.30 E-value=16 Score=24.41 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=19.9
Q ss_pred hcchhhhhhhhhheeecchhhhhhh
Q 033196 37 ALGAVVIVIGLYAVLWGKYKEYEEN 61 (125)
Q Consensus 37 iiGavLIi~GlYlvlwgK~kE~~~~ 61 (125)
++.++|.++|+.+.+++|-+....+
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~q 46 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQ 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCC
Confidence 6678899999999999987654433
Done!