Query 033196
Match_columns 125
No_of_seqs 128 out of 599
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 18:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 22.2 12 0.00085 19.8 0.5 20 32-51 6-25 (32)
2 d1vjea_ d.185.1.2 (A:) Autoind 10.5 57 0.0042 22.5 1.8 17 42-58 74-90 (149)
3 d1j98a_ d.185.1.2 (A:) Autoind 8.0 84 0.0061 21.6 1.9 34 25-58 58-96 (154)
4 d1h2sb_ f.17.4.1 (B:) Sensory 7.4 35 0.0026 19.9 -0.4 17 39-55 1-17 (60)
5 d1j6wa_ d.185.1.2 (A:) Autoind 6.3 56 0.0041 22.8 0.1 35 24-58 58-96 (161)
6 d1j6xa_ d.185.1.2 (A:) Autoind 6.3 1.1E+02 0.0083 20.9 1.8 14 43-56 80-93 (151)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 5.3 53 0.0039 20.0 -0.5 18 41-58 29-46 (91)
8 d1iwga8 f.35.1.1 (A:513-566,A: 5.3 1.3E+02 0.0097 20.4 1.7 32 12-44 90-121 (222)
9 d1eysm_ f.26.1.1 (M:) M (mediu 5.2 2E+02 0.015 21.8 2.9 21 2-22 45-65 (318)
10 d2i5nm1 f.26.1.1 (M:1-323) M ( 4.2 2.2E+02 0.016 21.6 2.5 26 3-28 45-70 (323)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.23 E-value=12 Score=19.80 Aligned_cols=20 Identities=45% Similarity=0.798 Sum_probs=14.9
Q ss_pred hhhhhhcchhhhhhhhhhee
Q 033196 32 IYVGGALGAVVIVIGLYAVL 51 (125)
Q Consensus 32 L~lGsiiGavLIi~GlYlvl 51 (125)
-|+|-++|++....|+|+=+
T Consensus 6 syvglligal~~tlgiylgl 25 (32)
T d1q90l_ 6 SYVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888643
No 2
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.55 E-value=57 Score=22.48 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.0
Q ss_pred hhhhhhhheeecchhhh
Q 033196 42 VIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 42 LIi~GlYlvlwgK~kE~ 58 (125)
=-..|+|+++||....+
T Consensus 74 GCrTGFYl~~~g~~~~~ 90 (149)
T d1vjea_ 74 GCRTGMYMAVIGEPDEQ 90 (149)
T ss_dssp TTSSEEEEEEESSCCHH
T ss_pred ccccccEEEEeCCCCHH
Confidence 34579999999986554
No 3
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=8.00 E-value=84 Score=21.65 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=20.3
Q ss_pred HHHhhhhhhhhh---h--cchhhhhhhhhheeecchhhh
Q 033196 25 SFILAEKIYVGG---A--LGAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 25 ~lfLgE~L~lGs---i--iGavLIi~GlYlvlwgK~kE~ 58 (125)
+-+|.+.+.++. + +|-.=-..|+|+++||....+
T Consensus 58 At~lRn~~~~~d~~~iI~~gPMGCrTGFYl~~~g~~~~~ 96 (154)
T d1j98a_ 58 AFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGETTSA 96 (154)
T ss_dssp HHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEECCCHH
T ss_pred HHHHHhCccccCCccEEEeCCCccccccEEEEECCCCHH
Confidence 335555555432 2 233344589999999976544
No 4
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=7.41 E-value=35 Score=19.95 Aligned_cols=17 Identities=47% Similarity=0.827 Sum_probs=12.9
Q ss_pred chhhhhhhhhheeecch
Q 033196 39 GAVVIVIGLYAVLWGKY 55 (125)
Q Consensus 39 GavLIi~GlYlvlwgK~ 55 (125)
|+++|+.|...+++|.-
T Consensus 1 gavfifvgaltvlfgai 17 (60)
T d1h2sb_ 1 GAVFIFVGALTVLFGAI 17 (60)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcHHHHHHhhh
Confidence 56788888888887764
No 5
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=6.28 E-value=56 Score=22.78 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=22.7
Q ss_pred HHHHhhhhhhhhh--hc--chhhhhhhhhheeecchhhh
Q 033196 24 GSFILAEKIYVGG--AL--GAVVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 24 ~~lfLgE~L~lGs--ii--GavLIi~GlYlvlwgK~kE~ 58 (125)
.+-||.+.+.+.+ +| |-.=-..|+|+.+||....+
T Consensus 58 ~At~lRnh~~~~~~~iId~gPMGCrTGFYl~~~G~~~~~ 96 (161)
T d1j6wa_ 58 FAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQ 96 (161)
T ss_dssp HHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEESCCCHH
T ss_pred HHHHhhhcccCCCceEEEecCCccccceEEEEeCCCCHH
Confidence 3446777666654 33 44445689999999976544
No 6
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=6.25 E-value=1.1e+02 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=11.5
Q ss_pred hhhhhhheeecchh
Q 033196 43 IVIGLYAVLWGKYK 56 (125)
Q Consensus 43 Ii~GlYlvlwgK~k 56 (125)
--.|+|+++||...
T Consensus 80 CrTGFYli~~g~~~ 93 (151)
T d1j6xa_ 80 CQTGFYLTVLNHDN 93 (151)
T ss_dssp TSSEEEEEEESCCC
T ss_pred cccccEEEEecCCC
Confidence 35799999999865
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.31 E-value=53 Score=19.97 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=9.6
Q ss_pred hhhhhhhhheeecchhhh
Q 033196 41 VVIVIGLYAVLWGKYKEY 58 (125)
Q Consensus 41 vLIi~GlYlvlwgK~kE~ 58 (125)
.+++.|+++...-|.+..
T Consensus 29 ~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHhhheeeecc
Confidence 344556666555555543
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=1.3e+02 Score=20.39 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhh
Q 033196 12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIV 44 (125)
Q Consensus 12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi 44 (125)
-.|++. +.++++..+++-+++..+.+|.++.+
T Consensus 90 ~ipl~~-~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 90 VVPLGV-IGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHH-HHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHcCCchhhhhcccccchh
Confidence 345543 45667777889999998887765543
No 9
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.23 E-value=2e+02 Score=21.84 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=15.1
Q ss_pred cccCceeeechhhHHHHHHHH
Q 033196 2 QKRGPVFVTAFSPLMMIIVAI 22 (125)
Q Consensus 2 ~kkGPvfvs~F~PL~~V~~aI 22 (125)
.+.||.|+..|--++.++..+
T Consensus 45 aqvGP~YlG~fGv~s~~~~~l 65 (318)
T d1eysm_ 45 AQIGPIYLGLTGTLSIFFGLV 65 (318)
T ss_dssp CCBCCCCCCHHHHHHHHHHHH
T ss_pred cccCCEeeehHHHHHHHHHHH
Confidence 368999999888665555433
No 10
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=4.25 E-value=2.2e+02 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred ccCceeeechhhHHHHHHHHHHHHHh
Q 033196 3 KRGPVFVTAFSPLMMIIVAIMGSFIL 28 (125)
Q Consensus 3 kkGPvfvs~F~PL~~V~~aIl~~lfL 28 (125)
+.||.|+..|--++.++.++-..++.
T Consensus 45 QvGPiYlG~~Gv~s~~~~~~~~~iIg 70 (323)
T d2i5nm1 45 QIGPIYLGASGIAAFAFGSTAILIIL 70 (323)
T ss_dssp EECCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEehHHHHHHHHHHHHHHHHH
Done!