BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033197
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 218 bits (556), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/139 (74%), Positives = 119/139 (85%), Gaps = 14/139 (10%)
Query: 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASL 60
MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+FAA L
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 61 PAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------------RKLDGIQVE 106
PA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+V R+LDGIQVE
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 107 LQATDPSEMGLDVFKDRAN 125
LQATDP+EM LDVF+ RAN
Sbjct: 121 LQATDPTEMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 15/133 (11%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 65
SG+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +C
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------------RKLDGIQVELQATD 111
RYA++DY+F + Q+++I FI W+PD+A + +KL GIQVE+QATD
Sbjct: 61 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 112 PSEMGLDVFKDRA 124
+E+ D +RA
Sbjct: 120 AAEISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 15/132 (11%)
Query: 7 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 66
G+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +CR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 67 YAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------------RKLDGIQVELQATDP 112
YA++DY+F + Q+++I FI W+PD+A + +KL GIQVE+QATD
Sbjct: 62 YAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 113 SEMGLDVFKDRA 124
+E+ D +RA
Sbjct: 121 AEISEDAVSERA 132
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 16/125 (12%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 65
SG+ V +C F ELK ++ R++VFK+ + + +++VEK + ++ F LP ++C
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDC 62
Query: 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------------RKLDGIQVELQATD 111
RYA+YD++F E +++I FI+WSPD A + R GI ++QATD
Sbjct: 63 RYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 112 PSEMG 116
SE+
Sbjct: 122 FSEVA 126
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 18/136 (13%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIV-EKLGEPTQTYEDFAASLPAEE 64
SG+AV D+ F +LK + Y+FI+F + + + +++V E +P +Y+ F LP +
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP--SYDAFLEKLPEND 61
Query: 65 CRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRK--------------LDGIQVELQA 109
C YA+YD+++ + ++S+I F WSPDTA VR L+G+ ++Q
Sbjct: 62 CLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQG 121
Query: 110 TDPSEMGLDVFKDRAN 125
TD SE+ D +R +
Sbjct: 122 TDFSEVSYDSVLERVS 137
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 13/94 (13%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE 64
ASGM V ++C +F ELK ++T ++IVFKIE +++VEK G+ ++F +LPA +
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIE--NTKIVVEKDGK--GNADEFRGALPAND 78
Query: 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98
CR+ VYD ++I F+ W PD A V+
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVK 103
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVI--VEKLGEPT---QTYED 55
+ + SG+ V D+C +F LK K ++I++KIE +K V+ +E E T
Sbjct: 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMR 62
Query: 56 FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTAR--------------VRKLD 101
+L ECRY + D T E + RI+FI WSP ++ VRK++
Sbjct: 63 IKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKIN 122
Query: 102 GIQVELQAT 110
GI L+ T
Sbjct: 123 GIFKSLEIT 131
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 38/153 (24%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 50
ASG+ V+D+ F ++K +++ + ++F + + +KQ+IVE+ +G+
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 51 QTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------- 97
T ED F LP +CRYA+YD + T E+ +K + FI W+P++A +
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 98 -----RKLDGIQVELQATDPSEMGLDVFKDRAN 125
+K GI+ E Q GLD KDR+
Sbjct: 121 KDAIKKKFTGIKHEWQVN-----GLDDIKDRST 148
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 33/138 (23%)
Query: 5 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 50
ASG+AV D F ++K +++ + ++F + E +K +I+E+ +G+
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 51 QTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARV--------- 97
QT +D F LP ++CRYA+YD + T E+ +K + FI W+P++A +
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 98 -----RKLDGIQVELQAT 110
+KL GI+ ELQA
Sbjct: 121 KDAIKKKLTGIKHELQAN 138
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 33/146 (22%)
Query: 2 ANAASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP--- 49
N+ASG+ V D+ F ++K K+ + ++F + +K +IVE+ E
Sbjct: 8 GNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVG 67
Query: 50 ------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARV------ 97
T ++ F LP ++CRYA+YD F T E+ +K + F W+P+ A +
Sbjct: 68 DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIY 126
Query: 98 --------RKLDGIQVELQATDPSEM 115
+K GI+ E QA P ++
Sbjct: 127 ASSKDAIKKKFQGIKHECQANGPEDL 152
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 63
A SG++V D+C +L+ K++ R+++ I + QK + V+ +GE ++ F ++
Sbjct: 10 AMSGVSVADECVTALNDLRHKKS-RYVIMHIVD-QKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98
YA +D+++ T + + ++ I+W+PD+ R
Sbjct: 68 VPCYAAFDFEYTTNDG-PRDKLILISWNPDSGAPR 101
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 63
A SG+ + + + +L+ K++ R+++ I K++ V ++GE + Y D E
Sbjct: 2 AISGVTLEESVRGAIDDLRMKKS-RYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRK 99
+ Y +D+++ A ++ ++ I W PDTAR R+
Sbjct: 61 KPCYVAFDFEYNDA-GSKREKLILIQWIPDTARPRE 95
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE-- 63
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQ--NCEIIIHSKGAST-TLTELVQSIDKNNE 61
Query: 64 -ECRYAVYD-----YDFVTAENCQKSRIFFIAWSPDTARVRKLDGIQV 105
+C Y V+D + F+ A SR S A ++K++G+ V
Sbjct: 62 IQCAYVVFDAVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 109
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAAS--LPAE 63
+G+ +D K F R ++ + KI + +Q++V P+ ++E S LP
Sbjct: 5 TGIQASEDVKEIFAR---ARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRKLDGIQVELQATDPSEMGLDVFKD 122
E + Y + ++N Q FIAWSPD + VR+ + +AT E G KD
Sbjct: 62 EDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQ-KMLYAATRATLKKEFGGGHIKD 119
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 8 MAVHDDCKLKFLELKAK-RTYRFIVFKIEEKQKQVIV--EKLGEPTQTYEDFAASLP--- 61
M +H +LK KA+ + R I IE++Q + E +G Q Y+ A LP
Sbjct: 2 MGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYD--RAVLPLLD 59
Query: 62 AEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRKLDGIQVELQATDPSEMGLDVFK 121
A++ Y +Y D ++N Q F+AWSPD + VR L + +AT E G K
Sbjct: 60 AQQPCYLLYRLD---SQNAQGFEWLFLAWSPDNSPVR-LKMLYAATRATVKKEFGGGHIK 115
Query: 122 D 122
D
Sbjct: 116 D 116
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 6 SGMAVHDDCKLKFLELKAKRT-YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE- 63
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXC-EIIIHSKGAST-TLTELVQSIDKNN 62
Query: 64 --ECRYAVYD-----YDFVTAENCQKSRIFFIAWSPDTARVRKLDGIQV 105
+C Y V+D + F+ A SR S A ++K++G+ V
Sbjct: 63 EIQCAYVVFDAVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 111
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ K+++ ++ V++E+ + + E+ LP + R+ VY Y +V
Sbjct: 15 RKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKYVH 73
Query: 77 AENCQKSRIFFIAWSP 92
+ + FI SP
Sbjct: 74 DDGRVSYPLCFIFSSP 89
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 31 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 89
Query: 77 AENCQKSRIFFIAWSP 92
+ + FI SP
Sbjct: 90 DDGRVSYPLCFIFSSP 105
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 25 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVT 76
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 25 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 83
Query: 77 AENCQKSRIFFIAWSP 92
+ + FI SP
Sbjct: 84 DDGRVSYPLCFIFSSP 99
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
Length = 496
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 ASGMAVHDDCKLKFLELKAK 24
A+GM V D + KF+EL+AK
Sbjct: 4 AAGMGVMSDLEKKFIELEAK 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,482,365
Number of Sequences: 62578
Number of extensions: 122263
Number of successful extensions: 262
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 22
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)