Query 033197
Match_columns 125
No_of_seqs 104 out of 784
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 1.1E-40 2.4E-45 231.6 14.3 123 3-125 5-141 (141)
2 KOG1735 Actin depolymerizing f 100.0 2E-35 4.4E-40 203.6 10.6 122 4-125 1-141 (146)
3 cd00013 ADF Actin depolymerisa 100.0 2.6E-33 5.6E-38 191.6 14.0 118 6-124 1-132 (132)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 1.2E-31 2.6E-36 182.4 12.6 113 12-125 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 1.2E-30 2.5E-35 178.0 13.2 113 12-125 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 8.2E-29 1.8E-33 168.0 6.4 100 4-115 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 4.7E-22 1E-26 133.0 10.3 119 7-125 7-141 (143)
8 KOG1747 Protein tyrosine kinas 99.7 1.1E-17 2.4E-22 126.9 7.2 114 1-124 1-135 (342)
9 KOG1747 Protein tyrosine kinas 99.7 1.4E-16 3.1E-21 120.9 11.0 118 5-125 172-311 (342)
10 KOG3655 Drebrins and related a 99.5 1.3E-13 2.7E-18 110.0 10.5 118 3-125 2-134 (484)
11 KOG2130 Phosphatidylserine-spe 47.5 15 0.00032 29.3 2.1 39 5-44 191-229 (407)
12 PF12663 DUF3788: Protein of u 41.6 35 0.00075 23.2 3.0 28 9-36 91-118 (133)
13 COG3905 Predicted transcriptio 41.6 25 0.00055 22.2 2.1 24 1-25 1-24 (83)
14 PF03400 DDE_Tnp_IS1: IS1 tran 39.8 70 0.0015 21.8 4.2 46 22-67 15-61 (131)
15 PRK04968 SecY interacting prot 37.4 74 0.0016 23.1 4.2 32 31-62 141-177 (181)
16 PTZ00459 mucin-associated surf 31.6 18 0.00039 28.0 0.4 9 1-9 1-9 (291)
17 PF07348 Syd: Syd protein (SUK 30.5 66 0.0014 23.2 3.1 29 33-61 142-175 (176)
18 COG4451 RbcS Ribulose bisphosp 28.8 1.6E+02 0.0034 20.1 4.4 38 7-44 62-100 (127)
19 COG4075 Uncharacterized conser 27.9 1E+02 0.0022 20.2 3.3 29 8-36 72-102 (110)
20 PF06110 DUF953: Eukaryotic pr 25.9 41 0.00088 22.6 1.2 37 52-97 4-44 (119)
21 PF14157 YmzC: YmzC-like prote 25.0 1.2E+02 0.0026 18.2 3.0 16 31-46 43-58 (63)
22 PTZ00248 eukaryotic translatio 24.3 3.6E+02 0.0078 21.3 6.6 52 21-72 64-115 (319)
23 PRK00453 rpsF 30S ribosomal pr 24.0 1.5E+02 0.0032 19.0 3.7 29 9-37 66-96 (108)
24 cd01778 RASSF1_RA Ubiquitin-li 23.1 2E+02 0.0043 18.7 4.0 56 39-94 19-83 (96)
25 PF09793 AD: Anticodon-binding 22.7 1E+02 0.0022 19.4 2.6 24 6-29 28-52 (91)
26 PF06366 FlhE: Flagellar prote 21.9 1.3E+02 0.0029 19.8 3.1 26 82-107 75-101 (106)
27 PF13645 YkuD_2: L,D-transpept 21.6 1.3E+02 0.0028 21.7 3.2 28 60-95 44-71 (176)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=1.1e-40 Score=231.61 Aligned_cols=123 Identities=59% Similarity=1.110 Sum_probs=114.7
Q ss_pred CcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 033197 3 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 82 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 82 (125)
|++|||+++++|+++|++||.++.+|||+|+|++++++|+|++.+..+.+|++|++.||+++|||++|||+|.+.+|+.+
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 45799999999999999999888789999999998889999987665678999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 83 SRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 83 ~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+||+||+|||++|+|| .|.|++++|||+|.+||+++.+.+++.
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence 9999999999999999 678999999999999999999999873
No 2
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=2e-35 Score=203.60 Aligned_cols=122 Identities=61% Similarity=1.044 Sum_probs=114.5
Q ss_pred cccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCC---CCCceEEEEEeeeecCC--
Q 033197 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLP---AEECRYAVYDYDFVTAE-- 78 (125)
Q Consensus 4 ~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~---~~~pry~~~~~~~~~~~-- 78 (125)
++||+.|+|+|+..|++||.++.+||++|+|++++.+|++++.|..+.+|++|...|| .++|||++||++|++..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 3799999999999999999999999999999999899999998999999999999999 99999999999999844
Q ss_pred CceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 79 NCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 79 ~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+..++|++||.|||++|||| +|.|+++++||||++|++++.|+++|+
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 34789999999999999999 689999999999999999999999974
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=2.6e-33 Score=191.58 Aligned_cols=118 Identities=49% Similarity=0.932 Sum_probs=109.3
Q ss_pred cCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccE
Q 033197 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (125)
Q Consensus 6 SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~kl 85 (125)
||++++++|.++|++|+.+++.+|++|+|+.++++|+++++|.+..++++|.+.||+++|||++||+++.+. |+.++|+
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 699999999999999998867999999999988999999888655689999999999999999999998876 7889999
Q ss_pred EEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 86 FFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 86 vfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
+||+|||++||+| .+.|+++.+++++.+||+++.+.+||
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 9999999999998 36789999999999999999999886
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.98 E-value=1.2e-31 Score=182.39 Aligned_cols=113 Identities=35% Similarity=0.813 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccEEEEEEc
Q 033197 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWS 91 (125)
Q Consensus 12 ~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~klvfI~w~ 91 (125)
|||+++|++|+.+++.+|++|+|+++++.|+|+++|....+|++|.+.|++++|||++||+.+.+. |+.++|++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 799999999999977999999999988999999988556799999999999999999999999877 6889999999999
Q ss_pred CCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 92 PDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 92 P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
|++||+| .|.|++.++|++|.+||+++.|.+||.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 9999998 567899999999999999999999974
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.97 E-value=1.2e-30 Score=177.97 Aligned_cols=113 Identities=46% Similarity=0.891 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccEEEEEEc
Q 033197 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWS 91 (125)
Q Consensus 12 ~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~klvfI~w~ 91 (125)
++|.++|++||++++.+|++|+|+.++++|+|+++|....+|++|++.||+++|||++||+++.++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999998877999999999988999999887656789999999999999999999998875 4678999999999
Q ss_pred CCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 92 PDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 92 P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
|++|++| .|.|++..+|+++.+||++++|.++|.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 9999998 567899999999999999999999874
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.95 E-value=8.2e-29 Score=168.04 Aligned_cols=100 Identities=26% Similarity=0.612 Sum_probs=85.5
Q ss_pred cccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCC---ceEEEEEeeeecCCCc
Q 033197 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYDFVTAENC 80 (125)
Q Consensus 4 ~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~---pry~~~~~~~~~~~~~ 80 (125)
|+|||+++++|+++|++||.++.+||++|+|++ ++|+|++.+.. .+|++|++.||+++ |||++||++
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~~-~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGAT-TTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCCC-CCHHHHHHhccccCCCCceEEEEccC-------
Confidence 379999999999999999998889999999975 78999988764 68999999999988 999999973
Q ss_pred eeccEEEEEEcCCCcccc--------------cccCee-EEEEecCCCCC
Q 033197 81 QKSRIFFIAWSPDTARVR--------------KLDGIQ-VELQATDPSEM 115 (125)
Q Consensus 81 ~~~klvfI~w~P~~a~vk--------------~l~gi~-~~i~~~d~~el 115 (125)
++++||+|||++|+|| .|.|++ ...|+++.+||
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 4799999999999999 456765 34466666655
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.88 E-value=4.7e-22 Score=133.04 Aligned_cols=119 Identities=14% Similarity=0.347 Sum_probs=104.9
Q ss_pred CceeCHHHHHHHHHhhcC-C--CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceec
Q 033197 7 GMAVHDDCKLKFLELKAK-R--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (125)
Q Consensus 7 Gi~vs~e~~~~~~~lk~~-~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~ 83 (125)
-.+++++..+.++.++.+ + +..+++++|++++..|+++..--...+-+|+.+.||+.+|||++|.|+++++||+...
T Consensus 7 ~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~st 86 (143)
T KOG1736|consen 7 VCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVST 86 (143)
T ss_pred EEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccc
Confidence 468999999999999865 3 6889999999999999998533335678899999999999999999999999999999
Q ss_pred cEEEEEEcCCCcccc-------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 84 RIFFIAWSPDTARVR-------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 84 klvfI~w~P~~a~vk-------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+|+||||.|-.++.- .-.|+++.|++.+.+|++++++.++|.
T Consensus 87 PL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 87 PLCFIYWSPVGCKPEQQMMYAGAKNMLVQTAELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred cEEEEEecCccCCHHHHHHHHHHHHHHHHHhhheEEEEecccccccHHHHHHHhh
Confidence 999999999988776 224789999999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.72 E-value=1.1e-17 Score=126.92 Aligned_cols=114 Identities=28% Similarity=0.417 Sum_probs=92.9
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeee----CCCCCCHHHHHhcC-CCCCceEEEEEeeee
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKL----GEPTQTYEDFAASL-PAEECRYAVYDYDFV 75 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~----~~~~~~~~e~~~~L-~~~~pry~~~~~~~~ 75 (125)
|+ +++||..++++.+.|++-|.++ .|.+...|+. +++++..+ ..+..+|+.++..| .+.+||||+|+.+
T Consensus 1 MS-~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrld-- 74 (342)
T KOG1747|consen 1 MS-HQTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLD-- 74 (342)
T ss_pred CC-cccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeec--
Confidence 65 8999999999999999999998 9999999987 67776543 33456788887655 4789999999986
Q ss_pred cCCCceeccEEEEEEcCCCcccc--------------cccC--eeEEEEecCCCCCCHHHHHhhh
Q 033197 76 TAENCQKSRIFFIAWSPDTARVR--------------KLDG--IQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 76 ~~~~~~~~klvfI~w~P~~a~vk--------------~l~g--i~~~i~~~d~~el~~~~i~~k~ 124 (125)
++..+|+||+|+||+|||| .+.| +..+.++++.+||+...+.+.+
T Consensus 75 ----s~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 75 ----SKNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ----CCCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 3445999999999999999 3433 5679999999999988766543
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.70 E-value=1.4e-16 Score=120.91 Aligned_cols=118 Identities=16% Similarity=0.340 Sum_probs=102.0
Q ss_pred ccCc--eeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 033197 5 ASGM--AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 82 (125)
Q Consensus 5 ~SGi--~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 82 (125)
++|| +++++..+|+++|+.++ .+||+|.|+...+.|.|.++.. ..+..++...+|.+.|||.+|.|.|++ +|...
T Consensus 172 l~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~-eGD~~ 248 (342)
T KOG1747|consen 172 LQGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTH-EGDPL 248 (342)
T ss_pred ccceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEeccccc-CCCCc
Confidence 4677 67899999999999988 9999999998789999988764 358899999999999999999999886 45667
Q ss_pred ccEEEEEEcCC-Ccccc--------------cc---cC--eeEEEEecCCCCCCHHHHHhhhC
Q 033197 83 SRIFFIAWSPD-TARVR--------------KL---DG--IQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 83 ~klvfI~w~P~-~a~vk--------------~l---~g--i~~~i~~~d~~el~~~~i~~k~~ 125 (125)
++.+|||.||. +|+|| .+ .| |.+.|+++|.+||+++.+.+.++
T Consensus 249 es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 249 ESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred eeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 89999999999 99999 11 25 46899999999999998887764
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.51 E-value=1.3e-13 Score=110.01 Aligned_cols=118 Identities=13% Similarity=0.251 Sum_probs=97.4
Q ss_pred CcccCceeCHHHHHHHHHhhcCC-CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCce
Q 033197 3 NAASGMAVHDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 81 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 81 (125)
|...+-.=..+|.++|+.+..++ ...|++|++++.+..+-+.. .+...|++|++.+....-.|++.+.. +.++.
T Consensus 2 ~~l~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~--s~~~~~~e~~~df~~~kv~yg~~rv~---D~~s~ 76 (484)
T KOG3655|consen 2 MPLNTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAG--SGEGGLEEFLGDFDSGKVMYGFCRVK---DPMSG 76 (484)
T ss_pred CcccccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeec--cccccHHHHhhhcccCceeEEEEEec---CcccC
Confidence 33445544678999999999876 69999999998555554443 44458999999999999999999985 44677
Q ss_pred eccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 82 KSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 82 ~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
..|+|||.||++++++- -|.|++++|+|.+.+||+.+.|.++|+
T Consensus 77 l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 77 LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred CcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 89999999999999864 467999999999999999999999874
No 11
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=47.54 E-value=15 Score=29.26 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=30.8
Q ss_pred ccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEe
Q 033197 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVE 44 (125)
Q Consensus 5 ~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~ 44 (125)
-+||+|+|-...|||.|-.++ .||++|--..-.+.|.+.
T Consensus 191 GtsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv~ 229 (407)
T KOG2130|consen 191 GTSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKVT 229 (407)
T ss_pred CceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceeec
Confidence 346799999999999999998 999999766544555543
No 12
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=41.64 E-value=35 Score=23.25 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=25.2
Q ss_pred eeCHHHHHHHHHhhcCCCcEEEEEEEeC
Q 033197 9 AVHDDCKLKFLELKAKRTYRFIVFKIEE 36 (125)
Q Consensus 9 ~vs~e~~~~~~~lk~~~~~~~ii~~i~~ 36 (125)
.+++.+++.|++-+..+.-+|+.|.|.+
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~ 118 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRS 118 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCC
Confidence 5799999999999987779999999987
No 13
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=41.60 E-value=25 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.2
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCC
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKR 25 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~ 25 (125)
|+++. -|.+|||+...++.|....
T Consensus 1 ~~ta~-tirl~del~~rLd~lAe~~ 24 (83)
T COG3905 1 MMTAF-TIRLDDELKRRLDELAEAT 24 (83)
T ss_pred CCcce-EEecCHHHHHHHHHHHHHh
Confidence 44333 4999999999999997543
No 14
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=39.81 E-value=70 Score=21.81 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=34.0
Q ss_pred hcCCCcEEEEEEEeCCCceEEEeeeCCC-CCCHHHHHhcCCCCCceE
Q 033197 22 KAKRTYRFIVFKIEEKQKQVIVEKLGEP-TQTYEDFAASLPAEECRY 67 (125)
Q Consensus 22 k~~~~~~~ii~~i~~~~~~i~v~~~~~~-~~~~~e~~~~L~~~~pry 67 (125)
..+++..|+.+.++.+...|+--..|.+ ..++..|.+.|++-+|.+
T Consensus 15 g~K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 15 GNKKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred ccCCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 4455699999999998888875555554 357888888887766654
No 15
>PRK04968 SecY interacting protein Syd; Provisional
Probab=37.39 E-value=74 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEeCCCceEEEeeeCCC-----CCCHHHHHhcCCC
Q 033197 31 VFKIEEKQKQVIVEKLGEP-----TQTYEDFAASLPA 62 (125)
Q Consensus 31 i~~i~~~~~~i~v~~~~~~-----~~~~~e~~~~L~~ 62 (125)
+..+++.+++|.++.-|.. ..++.+|+++|.+
T Consensus 141 ~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 141 VISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 3445555667777766654 2689999998865
No 16
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=31.65 E-value=18 Score=27.99 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=6.1
Q ss_pred CCCcccCce
Q 033197 1 MANAASGMA 9 (125)
Q Consensus 1 ~~~~~SGi~ 9 (125)
|||||.|=-
T Consensus 1 MaMmMTGRV 9 (291)
T PTZ00459 1 MAMMMTGRV 9 (291)
T ss_pred CccchhchH
Confidence 777777753
No 17
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=30.51 E-value=66 Score=23.18 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=16.2
Q ss_pred EEeCCCceEEEeeeCCC-----CCCHHHHHhcCC
Q 033197 33 KIEEKQKQVIVEKLGEP-----TQTYEDFAASLP 61 (125)
Q Consensus 33 ~i~~~~~~i~v~~~~~~-----~~~~~e~~~~L~ 61 (125)
.+++.+++|.++.-|.. ..++.+|+++|.
T Consensus 142 sv~N~sGeV~LE~~G~~~~~~LA~sL~eFL~~L~ 175 (176)
T PF07348_consen 142 SVDNESGEVILEQFGTKPREVLAPSLAEFLSQLE 175 (176)
T ss_dssp EEETTT--EEEEETTSS-EEEEESSHHHHHHH-E
T ss_pred EEECCCCeEEEEeCCCCcceehhhhHHHHHHhcC
Confidence 34444455566665554 268889988774
No 18
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=28.77 E-value=1.6e+02 Score=20.05 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=30.0
Q ss_pred CceeCHHHHHHHHHhhcCCCcEEE-EEEEeCCCceEEEe
Q 033197 7 GMAVHDDCKLKFLELKAKRTYRFI-VFKIEEKQKQVIVE 44 (125)
Q Consensus 7 Gi~vs~e~~~~~~~lk~~~~~~~i-i~~i~~~~~~i~v~ 44 (125)
|.+-..|+++++++.+..+.--|| ++.|+..++..+++
T Consensus 62 ~~~~~~evlaele~Cr~dhp~eYIRliGfDp~gkrrv~s 100 (127)
T COG4451 62 GAKTAGEVLAELEACRADHPGEYIRLIGFDPKGKRRVVS 100 (127)
T ss_pred cccchHHHHHHHHHHHHhCCCCeEEEEEecCCCceEEEE
Confidence 566678999999999988866677 77899877766654
No 19
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=27.94 E-value=1e+02 Score=20.24 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=13.9
Q ss_pred ceeCHHHHHHHHHhhcCC--CcEEEEEEEeC
Q 033197 8 MAVHDDCKLKFLELKAKR--TYRFIVFKIEE 36 (125)
Q Consensus 8 i~vs~e~~~~~~~lk~~~--~~~~ii~~i~~ 36 (125)
.-+++|+...+.++-..+ +-||.|..|.-
T Consensus 72 tVV~Ee~vekie~~~~Ekla~eryTIi~ipI 102 (110)
T COG4075 72 TVVKEEKVEKIEELLKEKLANERYTIIEIPI 102 (110)
T ss_pred EecCHHHHHHHHHHHHHHhcCCceEEEEeee
Confidence 344555555555443322 35555555543
No 20
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=25.89 E-value=41 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.370 Sum_probs=18.3
Q ss_pred CHHHHHh---cCC-CCCceEEEEEeeeecCCCceeccEEEEEEcCCCccc
Q 033197 52 TYEDFAA---SLP-AEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARV 97 (125)
Q Consensus 52 ~~~e~~~---~L~-~~~pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~v 97 (125)
.|++|.+ .+. .+++.|++|--... ..| -+||||....
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d-~~g--------~sWCPDC~~a 44 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKD-ETG--------QSWCPDCVAA 44 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B--TTS---------BSSHHHHHH
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCC-CCC--------CcccHHHHHH
Confidence 3555554 433 45888888764322 112 2589985433
No 21
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.04 E-value=1.2e+02 Score=18.16 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=14.0
Q ss_pred EEEEeCCCceEEEeee
Q 033197 31 VFKIEEKQKQVIVEKL 46 (125)
Q Consensus 31 i~~i~~~~~~i~v~~~ 46 (125)
||++++++.+|.|-+.
T Consensus 43 Ifkyd~~tNei~L~KE 58 (63)
T PF14157_consen 43 IFKYDEDTNEITLKKE 58 (63)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEeCCCCCeEEEEEe
Confidence 7999999999998765
No 22
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=24.25 E-value=3.6e+02 Score=21.31 Aligned_cols=52 Identities=8% Similarity=0.155 Sum_probs=38.8
Q ss_pred hhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEe
Q 033197 21 LKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDY 72 (125)
Q Consensus 21 lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~ 72 (125)
+|.+......+++++.++..|.|...--...+|+++.+.++...-.......
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~ 115 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRH 115 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEE
Confidence 4666678999999998889999876544456899999888876555554443
No 23
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.96 E-value=1.5e+02 Score=19.05 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred eeCHHHHHHHH-HhhcCC-CcEEEEEEEeCC
Q 033197 9 AVHDDCKLKFL-ELKAKR-TYRFIVFKIEEK 37 (125)
Q Consensus 9 ~vs~e~~~~~~-~lk~~~-~~~~ii~~i~~~ 37 (125)
..+++++++++ .++.+. -.||+++++++.
T Consensus 66 ~~~~~~i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 66 EAPPAAIAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred EeCHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 55788888887 556554 488888888763
No 24
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=23.14 E-value=2e+02 Score=18.67 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=28.6
Q ss_pred ceEEEeeeCCCCCCHHHHHhcCC-CCCc-eEEEEEeeeecCCC--ce---e-cc-EEEEEEcCCC
Q 033197 39 KQVIVEKLGEPTQTYEDFAASLP-AEEC-RYAVYDYDFVTAEN--CQ---K-SR-IFFIAWSPDT 94 (125)
Q Consensus 39 ~~i~v~~~~~~~~~~~e~~~~L~-~~~p-ry~~~~~~~~~~~~--~~---~-~k-lvfI~w~P~~ 94 (125)
+.|-|..+-...+-.+.|+.++. .+.| -|++|...+.+.++ ++ . .+ ++-+.|-|+.
T Consensus 19 k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL~~rL~~gp~~ 83 (96)
T cd01778 19 KHLHISSKTTVREVIEALLKKFLVVDNPRKFALFEREHRTGQVYLRKLSDDECPLYLRLLAGPST 83 (96)
T ss_pred eEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEEEecCCcEEEEECCCCCCCeEeeEeeCCCC
Confidence 34444433222223444555544 4556 89999665554332 00 0 12 4678888875
No 25
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=22.65 E-value=1e+02 Score=19.40 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.2
Q ss_pred cCceeCHHHHHHHHHhhcCC-CcEE
Q 033197 6 SGMAVHDDCKLKFLELKAKR-TYRF 29 (125)
Q Consensus 6 SGi~vs~e~~~~~~~lk~~~-~~~~ 29 (125)
-|..+|++.++.|+.|...- ..+|
T Consensus 28 ~~~~vs~egQ~lF~~l~Kt~~dv~W 52 (91)
T PF09793_consen 28 IGPGVSPEGQKLFDALSKTIPDVRW 52 (91)
T ss_pred cCCCcCHHHHHHHHHHHhhCCCCEE
Confidence 37788999999999998654 3666
No 26
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=21.93 E-value=1.3e+02 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=15.2
Q ss_pred eccEEEEEEcCCCcccc-cccCeeEEE
Q 033197 82 KSRIFFIAWSPDTARVR-KLDGIQVEL 107 (125)
Q Consensus 82 ~~klvfI~w~P~~a~vk-~l~gi~~~i 107 (125)
...+.|+|++|.+..+. .|.+.+.++
T Consensus 75 ~~pf~F~~~v~g~G~l~ppl~v~snqv 101 (106)
T PF06366_consen 75 NEPFRFVFRVPGGGRLNPPLRVQSNQV 101 (106)
T ss_pred CCCEEEEEEecCCCcccCcEEEeeeEE
Confidence 35677888888776554 343433333
No 27
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=21.63 E-value=1.3e+02 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCCCCceEEEEEeeeecCCCceeccEEEEEEcCCCc
Q 033197 60 LPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTA 95 (125)
Q Consensus 60 L~~~~pry~~~~~~~~~~~~~~~~klvfI~w~P~~a 95 (125)
+|..++|+.|+|+. ..++++=+||-.+.
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~ 71 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGR 71 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeeccc
Confidence 68889999999985 34677777876643
Done!