Query 033197
Match_columns 125
No_of_seqs 104 out of 784
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 100.0 1.3E-39 4.3E-44 224.4 14.5 125 1-125 1-139 (139)
2 2i2q_A Cofilin; N-terminal ser 100.0 3E-38 1E-42 216.8 13.6 121 3-125 1-135 (137)
3 2kvk_A Actin severing and dyna 100.0 9.8E-38 3.3E-42 216.3 14.8 119 3-124 1-133 (144)
4 1cfy_A Cofilin; actin-binding, 100.0 7.9E-38 2.7E-42 216.1 14.0 121 3-124 1-136 (143)
5 2xfa_A Actin depolymerization 100.0 3.8E-38 1.3E-42 219.0 10.7 122 1-125 4-145 (148)
6 2kd5_A ADF H, actin severing a 100.0 9.1E-37 3.1E-41 211.4 15.1 118 5-125 3-134 (144)
7 1vkk_A GMF-gamma, GLIA maturat 100.0 8.2E-37 2.8E-41 213.9 14.0 123 1-125 13-151 (154)
8 1cnu_A Actophorin, ADF, cofili 100.0 3E-36 1E-40 206.8 14.8 119 6-125 1-133 (137)
9 2lj8_A Cofilin/actin depolymer 100.0 2.6E-36 9E-41 209.2 14.3 119 2-124 8-140 (144)
10 1tvj_A Cofilin; ADF, actin bin 100.0 3.6E-36 1.2E-40 212.9 15.2 121 4-125 1-154 (166)
11 1ak6_A Destrin; actin depolyme 100.0 1.8E-36 6.1E-41 215.9 5.1 122 3-125 9-162 (174)
12 1m4j_A A6 gene product, twinfi 100.0 1.7E-35 5.9E-40 204.4 9.5 118 1-125 1-139 (142)
13 1v6f_A MGMF-beta, GLIA maturat 100.0 1E-33 3.5E-38 197.5 14.2 117 7-125 13-145 (151)
14 2w0i_A Twinfilin-2; cytoskelet 100.0 1.8E-33 6.1E-38 192.9 12.6 114 8-125 2-135 (135)
15 2d8b_A Twinfilin-1; cell-free 100.0 1.8E-33 6.1E-38 199.1 11.9 118 4-125 21-160 (166)
16 2vac_A Twinfilin-2; transferas 100.0 2.4E-33 8.3E-38 192.0 9.9 112 5-122 1-133 (134)
17 1hqz_1 ABP1P, actin-binding pr 100.0 3.1E-32 1.1E-36 187.7 12.5 115 4-125 2-136 (141)
18 3daw_B Twinfilin-1, protein A6 100.0 1E-31 3.4E-36 189.8 13.9 118 4-125 16-155 (164)
19 3q2b_A Pfadf1, cofilin/actin-d 100.0 1.1E-32 3.8E-37 186.7 5.2 103 3-117 2-122 (124)
20 2l72_A Tgadf, actin depolymeri 100.0 1.4E-31 4.9E-36 184.5 10.4 102 4-118 22-138 (139)
21 1x67_A Drebrin-like protein; c 100.0 2.7E-30 9.3E-35 179.2 12.5 116 4-124 4-139 (146)
22 1t3y_A Coactosin-like protein; 100.0 2.5E-28 8.4E-33 168.6 12.0 108 11-124 6-128 (141)
23 1pfj_A TFIIH basal transcripti 52.8 32 0.0011 21.9 5.0 32 62-95 5-38 (108)
24 2p2e_A Putative Fe-S biosynthe 51.7 20 0.0007 23.2 4.1 28 7-35 4-31 (128)
25 2ay0_A Bifunctional PUTA prote 51.5 7.8 0.00027 21.7 1.7 24 1-24 1-24 (58)
26 3vbh_A EV71, genome polyprotei 45.8 29 0.00099 26.0 4.5 44 53-98 116-163 (297)
27 1ncq_A Coat protein VP1; HRV, 43.6 33 0.0011 25.5 4.5 34 65-98 119-160 (289)
28 2gpe_A Bifunctional protein PU 37.5 12 0.0004 20.0 1.0 24 1-24 1-24 (52)
29 1z7s_1 Human coxsackievirus A2 37.2 48 0.0017 24.7 4.6 34 65-98 120-162 (298)
30 1tme_1 Theiler'S murine enceph 34.4 39 0.0013 25.0 3.6 34 65-98 120-153 (274)
31 1aym_1 HRV16, human rhinovirus 34.1 33 0.0011 25.5 3.2 33 66-98 114-152 (285)
32 1fmd_1 Foot-and-mouth disease 33.3 30 0.001 24.6 2.7 29 64-98 68-96 (208)
33 2mev_1 Mengo virus coat protei 31.9 36 0.0012 25.2 3.1 33 66-98 121-153 (277)
34 2k5j_A Uncharacterized protein 31.2 30 0.001 20.4 2.2 21 3-23 9-29 (80)
35 1bev_1 Bovine enterovirus coat 30.5 66 0.0023 23.8 4.3 34 65-98 112-153 (281)
36 2ygw_A Malonyl-COA decarboxyla 30.2 26 0.00091 27.9 2.2 33 51-89 192-224 (460)
37 3ffv_A Protein SYD; membrane, 29.9 50 0.0017 22.9 3.4 31 32-62 144-179 (181)
38 1d4m_1 Protein (coxsackievirus 28.7 81 0.0028 23.5 4.6 33 66-98 111-154 (299)
39 1ev1_1 Echovirus 1; viral coat 27.8 86 0.0029 23.2 4.6 33 66-98 111-154 (281)
40 1qqp_1 FMDV, protein (genome p 26.3 25 0.00086 25.1 1.3 28 65-98 69-96 (213)
41 2eo2_A Adult MALE hypothalamus 25.3 37 0.0013 19.9 1.7 17 102-122 41-57 (71)
42 3cji_A Polyprotein; virus caps 25.1 43 0.0015 24.6 2.5 33 65-98 116-148 (263)
43 1hxs_1 Genome polyprotein, coa 24.8 72 0.0025 23.9 3.7 14 85-98 154-167 (302)
44 2wzr_1 Polyprotein; capsid, RN 24.6 34 0.0012 24.5 1.8 30 64-98 69-98 (219)
45 1zba_1 Coat protein VP1; oligo 24.5 47 0.0016 23.6 2.5 29 64-98 68-96 (212)
46 3fxt_A Nucleoside diphosphate- 22.4 66 0.0023 20.5 2.7 15 81-95 98-112 (113)
47 1mvf_D MAZE protein, PEMI-like 22.2 85 0.0029 18.1 3.0 52 6-63 13-65 (82)
48 2ws9_1 P1; 3.00A {Equine rhini 22.2 60 0.0021 23.5 2.7 35 64-98 74-114 (246)
49 2raq_A Conserved protein MTH88 21.4 1.6E+02 0.0053 18.3 5.4 59 12-71 22-80 (97)
50 1vs0_A Putative DNA ligase-lik 20.1 76 0.0026 23.4 3.0 26 51-76 91-116 (310)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=1.3e-39 Score=224.42 Aligned_cols=125 Identities=83% Similarity=1.321 Sum_probs=104.3
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCc
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 80 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~ 80 (125)
|+||+|||++++||+++|++++.++.+||++|+|++++++|+|+.+|.+..+|++|.+.||+++|||++||+++++.+|+
T Consensus 1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~ 80 (139)
T 1f7s_A 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC 80 (139)
T ss_dssp ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence 88899999999999999999998767999999999988899999988776799999999999999999999999999999
Q ss_pred eeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 81 QKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 81 ~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
.+.|++||+|||++||+| .|.|++.+|||+|.+||+++.|.+|++
T Consensus 81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999998 567899999999999999999999874
No 2
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-38 Score=216.85 Aligned_cols=121 Identities=35% Similarity=0.757 Sum_probs=100.3
Q ss_pred CcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 033197 3 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 82 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 82 (125)
||+|||++++||+++|++|+.++.++|++|+|++++++|+|+. +....+|++|.+.||+++|||++||+++.+.+| .+
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~ 78 (137)
T 2i2q_A 1 MSFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VR 78 (137)
T ss_dssp -CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CE
T ss_pred CCCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-Cc
Confidence 4589999999999999999998779999999998889999987 544579999999999999999999999998887 88
Q ss_pred ccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 83 SRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 83 ~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+|++||+|||++|+|| .|.|++++|||+|.+||+++.+.++|+
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~ 135 (137)
T 2i2q_A 79 NKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVT 135 (137)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC------------
T ss_pred cCEEEEEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhc
Confidence 9999999999999998 567999999999999999999999874
No 3
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=9.8e-38 Score=216.35 Aligned_cols=119 Identities=25% Similarity=0.517 Sum_probs=109.7
Q ss_pred CcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 033197 3 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 82 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 82 (125)
|++|||+++++|+++|++||.++ +||++|+|+.++++|+|+..|..+.+|++|.+.||+++|||++||++|.+.+ +.+
T Consensus 1 Ma~SGv~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~~-~~~ 78 (144)
T 2kvk_A 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKR 78 (144)
T ss_dssp CCCCCCEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEETT-EEE
T ss_pred CCcCCcccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccCC-CCc
Confidence 46899999999999999999977 8999999999999999999988888999999999999999999999997754 678
Q ss_pred ccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 83 SRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 83 ~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
+|++||+|||++||+| .|.| +++|||+|.+||+++.|.+|+
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~-~~~i~a~d~~el~~e~i~~kl 133 (144)
T 2kvk_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTT-EEEEEESSGGGGCHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEECChHHCCHHHHHHHH
Confidence 9999999999999999 4556 589999999999999999987
No 4
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=7.9e-38 Score=216.14 Aligned_cols=121 Identities=36% Similarity=0.734 Sum_probs=109.7
Q ss_pred CcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCC-ce
Q 033197 3 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQ 81 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~-~~ 81 (125)
||+|||.+++||+++|+++|.++.++|++|+|++++++|+|+.+|. ..+|++|++.||+++|||++||+++.+.+| +.
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~ 79 (143)
T 1cfy_A 1 MSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGK 79 (143)
T ss_dssp -----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCE
T ss_pred CCcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCccc
Confidence 4589999999999999999998889999999998889999998876 568999999999999999999999999888 89
Q ss_pred eccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 82 KSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 82 ~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
++|++||+|||++||+| .|.|++++|||+|.+||+++.|.+++
T Consensus 80 ~~k~vfI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl 136 (143)
T 1cfy_A 80 RSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERV 136 (143)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHH
T ss_pred ccCEEEEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHH
Confidence 99999999999999998 56799999999999999999999987
No 5
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3.8e-38 Score=219.02 Aligned_cols=122 Identities=29% Similarity=0.507 Sum_probs=110.1
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEe------eeCCCCCCHHHHHhcCCCCCceEEEEEeee
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVE------KLGEPTQTYEDFAASLPAEECRYAVYDYDF 74 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~------~~~~~~~~~~e~~~~L~~~~pry~~~~~~~ 74 (125)
|+ |+|||.+++||+++|+++|.++.+||++|+| +++++|+++ .+|..+.+|++|.+.||+++|||++||+++
T Consensus 4 ms-m~sGi~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~ 81 (148)
T 2xfa_A 4 GS-MVSGVNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPI 81 (148)
T ss_dssp ---CCCCCEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEE
T ss_pred cc-ccCCCeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEeccc
Confidence 55 5899999999999999999988899999999 567899998 555434689999999999999999999999
Q ss_pred ecCCCceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 75 VTAENCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 75 ~~~~~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
.+.+|+.++||+||+|||++|+|| .|.|++++|||+| +||+++.|.++++
T Consensus 82 ~~~~g~~~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~~ 145 (148)
T 2xfa_A 82 PTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAII 145 (148)
T ss_dssp CCSSCCCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHHH
T ss_pred ccCCCCcccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHhh
Confidence 999999999999999999999999 5679999999999 9999999999873
No 6
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=9.1e-37 Score=211.35 Aligned_cols=118 Identities=25% Similarity=0.524 Sum_probs=110.2
Q ss_pred ccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceecc
Q 033197 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSR 84 (125)
Q Consensus 5 ~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k 84 (125)
+|||++++||+++|+++|.++ ++|++|+|++++++|+|+.+|..+.+|++|.+.||+++|||++||+++.+.+ +.++|
T Consensus 3 ~SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~~~~k 80 (144)
T 2kd5_A 3 ISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKREK 80 (144)
T ss_dssp CCSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-CEEEE
T ss_pred ccCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-CCccC
Confidence 499999999999999999988 9999999998889999999887678999999999999999999999999877 66899
Q ss_pred EEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 85 IFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 85 lvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
++||+|||++||+| .|.|+ ++||++|++||+++.|.+||+
T Consensus 81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl~ 134 (144)
T 2kd5_A 81 LILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKVR 134 (144)
T ss_dssp EEEEEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHHh
Confidence 99999999999998 56789 999999999999999999873
No 7
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=8.2e-37 Score=213.92 Aligned_cols=123 Identities=16% Similarity=0.308 Sum_probs=109.8
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCC--CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCC
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~ 78 (125)
|+.+.||++++++|+++|++||.++ .++|++|+|++++++|+|+.++. +.+|++|.+.||+++|||++||++|++.+
T Consensus 13 ~~~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~ 91 (154)
T 1vkk_A 13 MSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVHDD 91 (154)
T ss_dssp -----CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCSSSCEEEEEECCEECTT
T ss_pred ccccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCCCCcEEEEEEeeeccCC
Confidence 5557889999999999999999875 69999999999889999998654 46899999999999999999999999999
Q ss_pred CceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 79 NCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 79 ~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
|+.++|++||+|||++|++| .| |++++|||+|.+||+++.|.++|+
T Consensus 92 g~~~~klvFI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~e~i~~kl~ 151 (154)
T 1vkk_A 92 GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTA-ELTKVFEIRTTDDLTETWLKEKLA 151 (154)
T ss_dssp SCEECCEEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCCCEEEESSGGGCCHHHHHHHHH
T ss_pred CcccccEEEEEECCCCCChhhhhhhHhhHHHHHHhh-CceEEEEECChHhCCHHHHHHHHh
Confidence 98999999999999999999 45 999999999999999999999873
No 8
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=3e-36 Score=206.75 Aligned_cols=119 Identities=48% Similarity=0.894 Sum_probs=110.9
Q ss_pred cCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccE
Q 033197 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRI 85 (125)
Q Consensus 6 SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~kl 85 (125)
|||+++++|+++|++|+.++.++|++|+|++++++|+++.+|..+.+|++|.+.||+++|||++||+++.+.+| .++|+
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~ 79 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKI 79 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEEEE
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-CccCE
Confidence 79999999999999999987799999999988899999998876679999999999999999999999998887 88999
Q ss_pred EEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 86 FFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 86 vfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+||+|||++||+| .|.|++++|||++.+||+++.|.++++
T Consensus 80 vfI~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~ 133 (137)
T 1cnu_A 80 TFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 133 (137)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred EEEEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHh
Confidence 9999999999998 567999999999999999999999974
No 9
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=2.6e-36 Score=209.19 Aligned_cols=119 Identities=24% Similarity=0.592 Sum_probs=106.2
Q ss_pred CCcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCce
Q 033197 2 ANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 81 (125)
Q Consensus 2 ~~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 81 (125)
+|++|||++++||+++|++||.++ .+|++|+|+++ ++++++..+..+.+|++|++.||+++|||++|++++.+.+| .
T Consensus 8 ~Ma~SGi~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~-~ 84 (144)
T 2lj8_A 8 HMAMSGVSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG-P 84 (144)
T ss_dssp -CCCSSCEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-S
T ss_pred ccccCCceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-C
Confidence 367899999999999999999877 89999999864 66777777777889999999999999999999999998765 5
Q ss_pred eccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 82 KSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 82 ~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
++||+||+|||++|||| .|.|+ ++|||+|.+||++++|.+||
T Consensus 85 ~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~~~-~~i~a~d~~el~~e~i~~kl 140 (144)
T 2lj8_A 85 RDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGF-QGIQANDASGLDFEEISRKV 140 (144)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTS-EEEECCGGGTSCHHHHHHHH
T ss_pred cccEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCe-eEEEeCChHHCCHHHHHHHH
Confidence 68999999999999999 45666 48999999999999999987
No 10
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=3.6e-36 Score=212.92 Aligned_cols=121 Identities=31% Similarity=0.658 Sum_probs=110.1
Q ss_pred cccCceeCHHHHHHHHHhhcCC---------CcEEEEEEEeCCCceEEEee--------eCCC-CCCHHHHHhcCCCCCc
Q 033197 4 AASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEK--------LGEP-TQTYEDFAASLPAEEC 65 (125)
Q Consensus 4 ~~SGi~vs~e~~~~~~~lk~~~---------~~~~ii~~i~~~~~~i~v~~--------~~~~-~~~~~e~~~~L~~~~p 65 (125)
|+|||.+++||+++|++||.++ .+||++|+|+++++.|+++. .|.. +.+|++|++.||+++|
T Consensus 1 m~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~p 80 (166)
T 1tvj_A 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDC 80 (166)
T ss_dssp CCCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSC
T ss_pred CCCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCc
Confidence 4899999999999999999886 48999999999888999886 3432 5789999999999999
Q ss_pred eEEEEEeeeecCCCceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCC-CHHHHHhhhC
Q 033197 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEM-GLDVFKDRAN 125 (125)
Q Consensus 66 ry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el-~~~~i~~k~~ 125 (125)
||++||++|.+.+| .++||+||+|||++|+|| .|.|++++|||+|.+|| ++++|.+||.
T Consensus 81 rY~vy~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~ 154 (166)
T 1tvj_A 81 RYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLG 154 (166)
T ss_dssp EEEEEEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHT
T ss_pred EEEEEeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhC
Confidence 99999999998885 889999999999999999 57799999999999999 9999999974
No 11
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=1.8e-36 Score=215.93 Aligned_cols=122 Identities=32% Similarity=0.660 Sum_probs=109.6
Q ss_pred CcccCceeCHHHHHHHHHhhcCC---------CcEEEEEEEeCCCceEEEeee--------CCC-CCCHHHHHhcCCCCC
Q 033197 3 NAASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEKL--------GEP-TQTYEDFAASLPAEE 64 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~---------~~~~ii~~i~~~~~~i~v~~~--------~~~-~~~~~e~~~~L~~~~ 64 (125)
+|+|||.+++||+++|++||.++ .+||++|+|+++++.|+++.. |.. ..+|++|++.||+++
T Consensus 9 ~m~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~~~ 88 (174)
T 1ak6_A 9 NSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKD 88 (174)
T ss_dssp TTTTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCSSC
T ss_pred cccCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCCCC
Confidence 46899999999999999999884 588999999988888888753 322 568999999999999
Q ss_pred ceEEEEEeeeecCCCceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 65 pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
|||++||++|.+.+| .++||+||+|||++|+|| .|.|++++|||+|.+||++++|.++|.
T Consensus 89 prY~ly~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~ 162 (174)
T 1ak6_A 89 CRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG 162 (174)
T ss_dssp CCCEECCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTT
T ss_pred cEEEEEeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhc
Confidence 999999999988886 889999999999999999 577999999999999999999999974
No 12
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=1.7e-35 Score=204.42 Aligned_cols=118 Identities=28% Similarity=0.517 Sum_probs=100.6
Q ss_pred CCCcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCC----CCHHHHHhcC-CCCCceEEEEEeeee
Q 033197 1 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT----QTYEDFAASL-PAEECRYAVYDYDFV 75 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~----~~~~e~~~~L-~~~~pry~~~~~~~~ 75 (125)
|+ |+|||.+++||+++|+++|.++ +||++|+|++ ++|+|+.+|... .+|++|++.| |+++|||++||+++.
T Consensus 1 Ms-m~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~--~~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~ 76 (142)
T 1m4j_A 1 MS-HQTGIQASEDVKEIFARARNGK-YRLLKISIEN--EQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQ 76 (142)
T ss_dssp -------CCBCHHHHHHHHHHHTTT-CSEEEEEECS--SSEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEE
T ss_pred CC-CcCCCeECHHHHHHHHHHhcCC-eEEEEEEEcC--CEEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcC
Confidence 66 4899999999999999999988 9999999976 589999887655 3578999998 699999999999998
Q ss_pred cCCCceeccEEEEEEcCCCcccc--------------cccCeeE--EEEecCCCCCCHHHHHhhhC
Q 033197 76 TAENCQKSRIFFIAWSPDTARVR--------------KLDGIQV--ELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 76 ~~~~~~~~klvfI~w~P~~a~vk--------------~l~gi~~--~i~~~d~~el~~~~i~~k~~ 125 (125)
+.+ ++||+||+|||++|||| .|.|++. +|||+|++||+++.+.++++
T Consensus 77 ~~~---~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 77 NAQ---GYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp ETT---EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred CCC---CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 764 48999999999999999 5678776 99999999999999999874
No 13
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=1e-33 Score=197.49 Aligned_cols=117 Identities=15% Similarity=0.312 Sum_probs=107.6
Q ss_pred CceeCHHHHHHHHHhhcCC--CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceecc
Q 033197 7 GMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSR 84 (125)
Q Consensus 7 Gi~vs~e~~~~~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k 84 (125)
.++++++|+++|++||.++ .++|++|+|+.++++|+|+.++. ..+|++|.+.||+++|||++||++|.+.+|+.++|
T Consensus 13 ~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~~k 91 (151)
T 1v6f_A 13 VCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYP 91 (151)
T ss_dssp CCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEECC
T ss_pred EEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCCCCceEEEEecccccCCCccccc
Confidence 3689999999999999876 58999999999888999998764 45899999999999999999999999999888999
Q ss_pred EEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 85 IFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 85 lvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
++||+|||++|++| .| |++++|||+|.+||+++.|.+||+
T Consensus 92 ~vfI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~~~i~~kl~ 145 (151)
T 1v6f_A 92 LCFIFSSPVGCKPEQQMMYAGSKNKLVQTA-ELTKVFEIRNTEDLTEEWLREKLG 145 (151)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCSEEEEESSGGGCCHHHHHHHHH
T ss_pred EEEEEECCCCCChHHheehHHHHHHHHHHh-CCeEEEEECChHHCCHHHHHHHHc
Confidence 99999999999998 45 999999999999999999999873
No 14
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=192.88 Aligned_cols=114 Identities=14% Similarity=0.360 Sum_probs=104.9
Q ss_pred ceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccEEE
Q 033197 8 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFF 87 (125)
Q Consensus 8 i~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~klvf 87 (125)
++|+++|+++|++||.++ ++|++|+|+.+++.|+|+.++ ..+|++|.+.||+++|||++||+++.+.+| .++|++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~vf 77 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVVF 77 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEEE
Confidence 578999999999999988 999999999988999999876 568999999999999999999999988765 8999999
Q ss_pred EEEcCC-Ccccc--------------ccc---Cee--EEEEecCCCCCCHHHHHhhhC
Q 033197 88 IAWSPD-TARVR--------------KLD---GIQ--VELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 88 I~w~P~-~a~vk--------------~l~---gi~--~~i~~~d~~el~~~~i~~k~~ 125 (125)
|+|||+ +|++| .|. |++ ++|||+|.+||+++.|.++|+
T Consensus 78 I~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl~ 135 (135)
T 2w0i_A 78 IYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEVH 135 (135)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHHC
T ss_pred EEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhhC
Confidence 999999 99999 355 876 999999999999999999985
No 15
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-33 Score=199.06 Aligned_cols=118 Identities=18% Similarity=0.373 Sum_probs=108.2
Q ss_pred cccCce--eCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCce
Q 033197 4 AASGMA--VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 81 (125)
Q Consensus 4 ~~SGi~--vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 81 (125)
++|||. |+++|+++|++||.+ .++||+|+|+.++++|+|+.++ ..+|++|.+.||+++|||++|||+|.+.+| .
T Consensus 21 ~~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~-~ 96 (166)
T 2d8b_A 21 TLQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD-Y 96 (166)
T ss_dssp CSCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE-E
T ss_pred ccCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC-c
Confidence 468998 999999999999998 5999999999988999999876 468999999999999999999999998776 6
Q ss_pred eccEEEEEEcCC-Ccccc--------------ccc---Ce--eEEEEecCCCCCCHHHHHhhhC
Q 033197 82 KSRIFFIAWSPD-TARVR--------------KLD---GI--QVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 82 ~~klvfI~w~P~-~a~vk--------------~l~---gi--~~~i~~~d~~el~~~~i~~k~~ 125 (125)
++|++||+|||+ +|++| .|. |+ +++|||+|.+||+++.|.++|+
T Consensus 97 ~~k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl~ 160 (166)
T 2d8b_A 97 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 160 (166)
T ss_dssp EEEEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHHH
T ss_pred cccEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHhC
Confidence 899999999999 99998 456 87 8999999999999999999873
No 16
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=191.96 Aligned_cols=112 Identities=28% Similarity=0.476 Sum_probs=100.3
Q ss_pred ccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCC----CCHHHHHhcC-CCCCceEEEEEeeeecCCC
Q 033197 5 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT----QTYEDFAASL-PAEECRYAVYDYDFVTAEN 79 (125)
Q Consensus 5 ~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~----~~~~e~~~~L-~~~~pry~~~~~~~~~~~~ 79 (125)
+|||.+++||+++|++||.++ +||++|+|++ ++|+|+..|... .+|++|++.| |+++|||++||+++.+.+
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~--~~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~- 76 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIED--EQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ- 76 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEET--TEEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT-
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecC--CEEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC-
Confidence 689999999999999999998 9999999987 589999887655 3578999998 699999999999998765
Q ss_pred ceeccEEEEEEcCCCcccc--------------cccCeeE--EEEecCCCCCCHHHHHh
Q 033197 80 CQKSRIFFIAWSPDTARVR--------------KLDGIQV--ELQATDPSEMGLDVFKD 122 (125)
Q Consensus 80 ~~~~klvfI~w~P~~a~vk--------------~l~gi~~--~i~~~d~~el~~~~i~~ 122 (125)
++||+||+|||++|||| .|.|++. +|||+|.+||+++.+++
T Consensus 77 --~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~ 133 (134)
T 2vac_A 77 --GFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQK 133 (134)
T ss_dssp --EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHH
T ss_pred --CceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhc
Confidence 48999999999999999 5678776 99999999999999875
No 17
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=99.98 E-value=3.1e-32 Score=187.75 Aligned_cols=115 Identities=16% Similarity=0.375 Sum_probs=102.6
Q ss_pred cccCceeC---HHHHHHHHHhhcCC--CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCC
Q 033197 4 AASGMAVH---DDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 78 (125)
Q Consensus 4 ~~SGi~vs---~e~~~~~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~ 78 (125)
+|+||.++ ++|+++|++++.++ .++|++|+|++ +++|+|+.+|. +|++|.+.||+++|||++|+++ .+
T Consensus 2 ~m~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~---~~ 74 (141)
T 1hqz_1 2 ALEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS---PP 74 (141)
T ss_dssp -CCCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC---CT
T ss_pred cccccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe---cC
Confidence 47788885 99999999999885 69999999987 67899998875 8999999999999999999997 35
Q ss_pred CceeccEEEEEEcCCCcccc-------------c--ccCeeEEEEecCCCCCCHHHHHhhhC
Q 033197 79 NCQKSRIFFIAWSPDTARVR-------------K--LDGIQVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 79 ~~~~~klvfI~w~P~~a~vk-------------~--l~gi~~~i~~~d~~el~~~~i~~k~~ 125 (125)
|+.+.|++||+|||++||+| . |.|++++||+++.+||+++.|.++++
T Consensus 75 ~~~~~k~vfI~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl~ 136 (141)
T 1hqz_1 75 GSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKIS 136 (141)
T ss_dssp TCSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHHH
T ss_pred CCceeeEEEEEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHHH
Confidence 67889999999999999998 3 45899999999999999999999873
No 18
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=99.98 E-value=1e-31 Score=189.82 Aligned_cols=118 Identities=17% Similarity=0.361 Sum_probs=105.7
Q ss_pred cccCc--eeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCce
Q 033197 4 AASGM--AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 81 (125)
Q Consensus 4 ~~SGi--~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 81 (125)
.++|| +|+++|+++|++||.++ .+||+|+|+.++++|+|+.. ...+|++|.+.||+++|||++|||++++. |+.
T Consensus 16 ~~~gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~--~~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~ 91 (164)
T 3daw_B 16 TLQGVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT--ENTELRDLPKRIPKDSARYHFFLYKHSHE-GDY 91 (164)
T ss_dssp --CCCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC--CCCCGGGSGGGSCSSSCEEEEEEEEEEET-TEE
T ss_pred ccCcceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC--CCCCHHHHHHhCCccCceEEEEecccccC-CCc
Confidence 46788 79999999999999986 99999999998899999987 34799999999999999999999999876 666
Q ss_pred eccEEEEEEcCC-Ccccc--------------ccc---Ce--eEEEEecCCCCCCHHHHHhhhC
Q 033197 82 KSRIFFIAWSPD-TARVR--------------KLD---GI--QVELQATDPSEMGLDVFKDRAN 125 (125)
Q Consensus 82 ~~klvfI~w~P~-~a~vk--------------~l~---gi--~~~i~~~d~~el~~~~i~~k~~ 125 (125)
+.+++||+|||+ +|+|| .|. |+ .++|||+|++||++++|.++|+
T Consensus 92 ~~~~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 92 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEEEEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred cccEEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 788999999999 99999 444 88 8999999999999999999974
No 19
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=99.97 E-value=1.1e-32 Score=186.75 Aligned_cols=103 Identities=24% Similarity=0.566 Sum_probs=92.2
Q ss_pred CcccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCC---ceEEEEEeeeecCCC
Q 033197 3 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYDFVTAEN 79 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~---pry~~~~~~~~~~~~ 79 (125)
+|+|||++++||+++|++||.++++|||+|+|++ ++|+|+..+. ..+|++|.+.||+++ |||++||+
T Consensus 2 ~m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~-~~~~~~f~~~Lp~~~~~~prY~vy~~------- 71 (124)
T 3q2b_A 2 SMISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGA-STTLTELVQSIDKNNEIQCAYVVFDA------- 71 (124)
T ss_dssp --CCSCEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEE-CSCHHHHHHHHHHCTTCSEEEEEEEC-------
T ss_pred CCCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCC-CCCHHHHHHHccccCCCCcEEEEEec-------
Confidence 4689999999999999999998889999999997 5899988775 368999999999999 99999997
Q ss_pred ceeccEEEEEEcCCCcccc--------------cccCee-EEEEecCCCCCCH
Q 033197 80 CQKSRIFFIAWSPDTARVR--------------KLDGIQ-VELQATDPSEMGL 117 (125)
Q Consensus 80 ~~~~klvfI~w~P~~a~vk--------------~l~gi~-~~i~~~d~~el~~ 117 (125)
+++++||+|||++|+|| .|.|++ +++||+|.+||++
T Consensus 72 --~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 72 --VSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp --SSCEEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred --CCCEEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 47999999999999999 567888 6999999999874
No 20
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=99.97 E-value=1.4e-31 Score=184.50 Aligned_cols=102 Identities=42% Similarity=0.805 Sum_probs=92.3
Q ss_pred cccCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceec
Q 033197 4 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKS 83 (125)
Q Consensus 4 ~~SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~ 83 (125)
|+|||++++||+++|++||.+++.+|++|+|++ ++|+++.+|+ + +|++|.+.||+++|||++|| +| +
T Consensus 22 m~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~------dg---~ 88 (139)
T 2l72_A 22 MASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD------CG---N 88 (139)
T ss_dssp CCTTCEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE------CS---S
T ss_pred ccCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc------CC---C
Confidence 589999999999999999998779999999998 7788888887 4 99999999999999999999 34 7
Q ss_pred cEEEEEEcCCCcccc--------------cccCeeEE-EEecCCCCCCHH
Q 033197 84 RIFFIAWSPDTARVR--------------KLDGIQVE-LQATDPSEMGLD 118 (125)
Q Consensus 84 klvfI~w~P~~a~vk--------------~l~gi~~~-i~~~d~~el~~~ 118 (125)
|++||+|||++|+|| .|.|++.. +++++.+||+++
T Consensus 89 k~vFI~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 89 KIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred cEEEEEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 999999999999999 46787764 999999999864
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=179.23 Aligned_cols=116 Identities=17% Similarity=0.322 Sum_probs=103.7
Q ss_pred cccCceeC-----HHHHHHHHHhhcCC-CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecC
Q 033197 4 AASGMAVH-----DDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTA 77 (125)
Q Consensus 4 ~~SGi~vs-----~e~~~~~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~ 77 (125)
++||..++ ++|+++|++++.++ .+||++|+|+++++.|+|..+|. .+|+||.+.|++++|||++||+++.
T Consensus 4 ~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~~~~~Y~~~r~~~~-- 79 (146)
T 1x67_A 4 GSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNSGKVMYAFCRVKDP-- 79 (146)
T ss_dssp SSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCTTSEEEEEEEEECS--
T ss_pred cccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCCCceEEEEEEEEcC--
Confidence 35666555 99999999999987 59999999998767899998886 4899999999999999999999743
Q ss_pred CCceeccEEEEEEcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 78 ENCQKSRIFFIAWSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 78 ~~~~~~klvfI~w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
++.+.|+|||.||||++|++ .|.|++.+|||++++||+++.|.+|+
T Consensus 80 -~~~~~K~vfI~W~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~ 139 (146)
T 1x67_A 80 -NSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKV 139 (146)
T ss_dssp -SSCSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHH
T ss_pred -CCCeeeEEEEEECCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHH
Confidence 56789999999999999998 57899999999999999999999987
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=99.96 E-value=2.5e-28 Score=168.55 Aligned_cols=108 Identities=14% Similarity=0.328 Sum_probs=98.6
Q ss_pred CHHHHHHHHHhhcCC-CcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeccEEEEE
Q 033197 11 HDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIA 89 (125)
Q Consensus 11 s~e~~~~~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~klvfI~ 89 (125)
+|+|+++|++++.++ .++|++|++++ ++|+|+.+|. .|+||++.||+++|||++||+. .+.+++.++|++||.
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~--~~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDG--STIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEET--TEEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcC--CEEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 689999999999987 59999999987 4599998886 4999999999999999999996 556678899999999
Q ss_pred EcCCCcccc--------------cccCeeEEEEecCCCCCCHHHHHhhh
Q 033197 90 WSPDTARVR--------------KLDGIQVELQATDPSEMGLDVFKDRA 124 (125)
Q Consensus 90 w~P~~a~vk--------------~l~gi~~~i~~~d~~el~~~~i~~k~ 124 (125)
|||+++|++ .|.|++.+|||+|.+||+++.|.+|+
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv 128 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSEL 128 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHH
Confidence 999999998 57899999999999999999999987
No 23
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=52.85 E-value=32 Score=21.91 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=19.6
Q ss_pred CCCceEEEEEeeeecCCCc--eeccEEEEEEcCCCc
Q 033197 62 AEECRYAVYDYDFVTAENC--QKSRIFFIAWSPDTA 95 (125)
Q Consensus 62 ~~~pry~~~~~~~~~~~~~--~~~klvfI~w~P~~a 95 (125)
+++..+.+.+..|...+|. .... .|.|.|+..
T Consensus 5 ~~~~ll~v~~v~yKK~dGtL~l~~d--~i~W~p~~~ 38 (108)
T 1pfj_A 5 SEEVLLIVKKVRQKKQDGALYLMAE--RIAWAPEGK 38 (108)
T ss_dssp SCCEEEEESCCBCSSCBCEEEEETT--EEEEECSSS
T ss_pred chheeEEehhheeecCCceEEEEcc--eEEEccCCC
Confidence 3456666666666666662 2233 788999644
No 24
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=51.66 E-value=20 Score=23.18 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=23.0
Q ss_pred CceeCHHHHHHHHHhhcCCCcEEEEEEEe
Q 033197 7 GMAVHDDCKLKFLELKAKRTYRFIVFKIE 35 (125)
Q Consensus 7 Gi~vs~e~~~~~~~lk~~~~~~~ii~~i~ 35 (125)
.|++++.+++.++++-... .+.+.++++
T Consensus 4 ~ItlT~~A~~~l~~~l~~~-~~~l~Lr~~ 31 (128)
T 2p2e_A 4 KITVTDDAAKKLQRYTDDS-NAVLLLDFD 31 (128)
T ss_dssp EEEECHHHHHHHHHHHTCT-TEEEEEEEC
T ss_pred EEEECHHHHHHHHHHHhcC-CceEEEEEe
Confidence 5999999999999997765 336778887
No 25
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=51.55 E-value=7.8 Score=21.67 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=19.0
Q ss_pred CCCcccCceeCHHHHHHHHHhhcC
Q 033197 1 MANAASGMAVHDDCKLKFLELKAK 24 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~ 24 (125)
|+|..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~svrL~~el~~rL~~lA~~ 24 (58)
T 2ay0_A 1 MGTTTMGVMLDDATRERIKSAATR 24 (58)
T ss_dssp --CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcceEeECCHHHHHHHHHHHHH
Confidence 667777899999999999999754
No 26
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=45.82 E-value=29 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCCceEEEEEeeeec----CCCceeccEEEEEEcCCCcccc
Q 033197 53 YEDFAASLPAEECRYAVYDYDFVT----AENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 53 ~~e~~~~L~~~~pry~~~~~~~~~----~~~~~~~klvfI~w~P~~a~vk 98 (125)
+..+..+| .--=|.-||++++- ..+....-.+-|+|+|.+||+-
T Consensus 116 ~~QlRrKL--e~FTY~RfDlEvT~V~t~~~~~~~~~~~QvmyvPpGaP~p 163 (297)
T 3vbh_A 116 YAQMRRKV--ELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKP 163 (297)
T ss_dssp SHHHHHHH--TTEEEEEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCCC
T ss_pred HHHHHhhh--ceeEEEeeeeEEEEEEecCCCCCCceEEEEEEcCCCCCCC
Confidence 33444444 23567777777661 1222222346799999999975
No 27
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=43.60 E-value=33 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=21.7
Q ss_pred ceEEEEEeeeecC------CCc--eeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVTA------ENC--QKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~~------~~~--~~~klvfI~w~P~~a~vk 98 (125)
--|.-||++++-- .|. ...=.+-|+|+|.+||+.
T Consensus 119 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p 160 (289)
T 1ncq_A 119 FTYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNP 160 (289)
T ss_dssp EEEEEEEEEEEEEEEEECCSCCSSCCCCEEEEEEECTTSCCC
T ss_pred ceEEcccEEEEEEEcCCccCCcccCCceEEEEEEeCCCCCCC
Confidence 3688888877610 011 222245699999999987
No 28
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=37.54 E-value=12 Score=19.96 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=18.6
Q ss_pred CCCcccCceeCHHHHHHHHHhhcC
Q 033197 1 MANAASGMAVHDDCKLKFLELKAK 24 (125)
Q Consensus 1 ~~~~~SGi~vs~e~~~~~~~lk~~ 24 (125)
|+|..-+|.+++++.+.++.+...
T Consensus 1 M~~~~~sirl~~~l~~~l~~lA~~ 24 (52)
T 2gpe_A 1 MGTTTMGVKLDDATRERIKSAATR 24 (52)
T ss_dssp -CEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcceEEEECCHHHHHHHHHHHHH
Confidence 555566789999999999998643
No 29
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral protein, icosahedral virus; HET: MYR G; 3.20A {Human coxsackievirus A21} PDB: 1z7z_1*
Probab=37.20 E-value=48 Score=24.74 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=21.2
Q ss_pred ceEEEEEeeeecC------CCc---eeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVTA------ENC---QKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~~------~~~---~~~klvfI~w~P~~a~vk 98 (125)
.-|.-||++.+-- .|. ...=.+-|+|+|.+||+.
T Consensus 120 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~~qvmyvPpGAP~p 162 (298)
T 1z7s_1 120 FTYSRFDLEMTFVFTENYPSTASGEVRNQVYQIMYIPPGAPRP 162 (298)
T ss_dssp EEEEEEEEEEEEEEEEECCSSCCCCCCCCEEEEEEECTTSCCC
T ss_pred ceEEeccEEEEEEEcccccCCcccCCCceEEEEEEcCCCCCCC
Confidence 3688888877610 010 111135699999999987
No 30
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=34.39 E-value=39 Score=24.98 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=21.7
Q ss_pred ceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
.-|.-+|++.+-.-.....-.+-|+|+|.+||+.
T Consensus 120 FTY~rfDLEvTvv~~~~~~~~~qvmyvPpGaP~p 153 (274)
T 1tme_1 120 FTYYKCDLEVTVSALGTDTVASVLRWAPTGAPAD 153 (274)
T ss_dssp EEEEEEEEEEEEEECSCSCCEEEEEEECTTCCCC
T ss_pred ceEecccEEEEEEEcCCCCceEEEEEcCCCCCCC
Confidence 3677788876632111112346799999999876
No 31
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1* 1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1* 1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1* 2hwe_1* 2hwf_1*
Probab=34.06 E-value=33 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=20.3
Q ss_pred eEEEEEeeeecCC------CceeccEEEEEEcCCCcccc
Q 033197 66 RYAVYDYDFVTAE------NCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 66 ry~~~~~~~~~~~------~~~~~klvfI~w~P~~a~vk 98 (125)
=|.-||++++--- +....=..-|+|+|.+||+.
T Consensus 114 TY~RfDlEvT~V~t~~~~~~~~~~~~~qvmyvPPGap~p 152 (285)
T 1aym_1 114 TYARFDSEITMVPSVAAKDGHIGHIVMQYMYVPPGAPIP 152 (285)
T ss_dssp EEEEEEEEEEEEEEEEESSSCCCCCEEEEEEECTTSCCC
T ss_pred eEEecCEEEEEEEecCcCCCCCCceEEEEEEcCCCCCCC
Confidence 5777777766211 01111135699999999986
No 32
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=33.32 E-value=30 Score=24.61 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred CceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 64 ~pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
-.-|..+|++.+-. .-.-|+|+|.+||+.
T Consensus 68 ~FTY~rfDlEvtvv------~~~qvmyvPpGaP~p 96 (208)
T 1fmd_1 68 AATYYFSDLEIAVT------HTGKLTWVPNGAPVS 96 (208)
T ss_dssp TEEEEEEEEEEEEE------EEEEEEEECTTCCGG
T ss_pred ccEEEeccEEEEEE------EeeEEEEECCCCCch
Confidence 44688888877632 115899999999986
No 33
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_1
Probab=31.93 E-value=36 Score=25.20 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=20.4
Q ss_pred eEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 66 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 66 ry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
-|..+|++.+-.-.....--.-|+|+|.+||+.
T Consensus 121 TY~rfDLEvtvv~~~~~~~~~~vmyvPpGaP~~ 153 (277)
T 2mev_1 121 VYYKCDLEVTLSPHTSGAHGLLVRWCPTGTPTK 153 (277)
T ss_dssp SEEEEEEEEEEEESCSSCCCEEEEEECTTSCCC
T ss_pred eEecccEEEEEEEcCCCCcceEEEECCCCCCCC
Confidence 688888877632111011123599999999876
No 34
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=31.17 E-value=30 Score=20.41 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=17.0
Q ss_pred CcccCceeCHHHHHHHHHhhc
Q 033197 3 NAASGMAVHDDCKLKFLELKA 23 (125)
Q Consensus 3 ~~~SGi~vs~e~~~~~~~lk~ 23 (125)
|+.-+|.++++..+.++.+..
T Consensus 9 m~risI~Lpdel~~~Ld~la~ 29 (80)
T 2k5j_A 9 MGRILLDLSNEVIKQLDDLEV 29 (80)
T ss_dssp CCEEEEEECHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHH
Confidence 445578899999999999864
No 35
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=30.51 E-value=66 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=21.4
Q ss_pred ceEEEEEeeeec---CC-----CceeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVT---AE-----NCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~---~~-----~~~~~klvfI~w~P~~a~vk 98 (125)
.-|..+|++.+- .. +....-.+-|+|+|.+||+.
T Consensus 112 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p 153 (281)
T 1bev_1 112 FTYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVP 153 (281)
T ss_dssp EEEEEEEEEEEEEEECBCTTSCBCCCCCEEEEEEECTTSCCC
T ss_pred ceEEcCCEEEEEEEcCCcccCCCCCCceEEEEEEcCCCCCCC
Confidence 368888887761 10 11111235699999999987
No 36
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=30.24 E-value=26 Score=27.86 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=25.0
Q ss_pred CCHHHHHhcCCCCCceEEEEEeeeecCCCceeccEEEEE
Q 033197 51 QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIA 89 (125)
Q Consensus 51 ~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~klvfI~ 89 (125)
.+|+|+..-|.++--||++|.... +..++|||.
T Consensus 192 ~~W~DLkrRL~pdRRCfaFFHp~m------P~EPLIfVe 224 (460)
T 2ygw_A 192 KNWMDMKRRVGPYRRCYFFSHCST------PGEPLVVLH 224 (460)
T ss_dssp CSHHHHHHHTSTTEEEEEEEETTB------TTCCSEEEE
T ss_pred CCHHHHHHhcCCCCeEEEecCCCC------CCCCeEEEe
Confidence 589999999988999999988642 234666654
No 37
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=29.85 E-value=50 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=20.5
Q ss_pred EEEeCCCceEEEeeeCCCC-----CCHHHHHhcCCC
Q 033197 32 FKIEEKQKQVIVEKLGEPT-----QTYEDFAASLPA 62 (125)
Q Consensus 32 ~~i~~~~~~i~v~~~~~~~-----~~~~e~~~~L~~ 62 (125)
..+++.+++|.++.-|... .++.+|+++|.+
T Consensus 144 Isv~N~sGeV~LE~~G~~~~~vLA~sLaeFL~~L~P 179 (181)
T 3ffv_A 144 ISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKP 179 (181)
T ss_dssp EEEETTTCCEEEEETTSSCEEEEESSHHHHHHHCEE
T ss_pred EEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCcc
Confidence 3444555666677666542 689999988853
No 38
>1d4m_1 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_A* 1upn_A 2c8i_A 1m11_1 2x5i_A* 3iyp_A*
Probab=28.70 E-value=81 Score=23.53 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=20.7
Q ss_pred eEEEEEeeeecCC-----------CceeccEEEEEEcCCCcccc
Q 033197 66 RYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 66 ry~~~~~~~~~~~-----------~~~~~klvfI~w~P~~a~vk 98 (125)
-|.-||++++--- +....-..-|+|+|.+||+.
T Consensus 111 TY~RfDlEvT~V~t~~~~~~t~~~~~~~~~~~qvmyvPpGAP~p 154 (299)
T 1d4m_1 111 TYLRFDMEVTFVITSRQDPGTTLAQDMPVLTHQIMYVPPGGPIP 154 (299)
T ss_dssp EEEEEEEEEEEEEEEEECCCSCCCCCCCCCEEEEEEECTTSCCC
T ss_pred eEEeceEEEEEEEcccccccccccCCCCceEEEEEECCCCCCCC
Confidence 6888888776100 01111235699999999987
No 39
>1ev1_1 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP: b.121.4.1
Probab=27.84 E-value=86 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=20.7
Q ss_pred eEEEEEeeeecCC-----------CceeccEEEEEEcCCCcccc
Q 033197 66 RYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 66 ry~~~~~~~~~~~-----------~~~~~klvfI~w~P~~a~vk 98 (125)
-|.-||++.+--- +....-..-|+|+|.+||+.
T Consensus 111 TY~RfDlEvT~V~t~~~~~~t~~~~~~~~~~~qvmyvPpGaP~p 154 (281)
T 1ev1_1 111 TYLRFDMEITVVITSSQDQSTSQNQNAPVLTHQIMYVPPGGPIP 154 (281)
T ss_dssp EEEEEEEEEEEEEEEEECCSTTTTCCCCCCEEEEEEECTTSCCC
T ss_pred eEEeccEEEEEEEcccccccccccCCCCceEEEEEEcCCCCCCC
Confidence 6888888776100 01111235699999999987
No 40
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=26.31 E-value=25 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=19.8
Q ss_pred ceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
.-|..+|++.+-.. . .-++|+|.+||+.
T Consensus 69 fTY~rfDlEvTvv~----~--~qvmwvPpGAP~p 96 (213)
T 1qqp_1 69 STYYFSDLEIAVKH----E--GDLTWVPNGAPEK 96 (213)
T ss_dssp EEEEEEEEEEEEEE----E--SCEEEECTTCCGG
T ss_pred cEEEeeeEEEEEEE----c--cEEEEECCCCCCc
Confidence 45777888765321 1 3689999999887
No 41
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.25 E-value=37 Score=19.94 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=13.6
Q ss_pred CeeEEEEecCCCCCCHHHHHh
Q 033197 102 GIQVELQATDPSEMGLDVFKD 122 (125)
Q Consensus 102 gi~~~i~~~d~~el~~~~i~~ 122 (125)
||.+ +|+++|++|.+.+
T Consensus 41 GI~k----tdP~~LT~eEi~~ 57 (71)
T 2eo2_A 41 GIHK----TDPSTLTEEEVRK 57 (71)
T ss_dssp TCCC----CSTTTCCHHHHHH
T ss_pred CCCC----CCcccCCHHHHhh
Confidence 7755 5999999998765
No 42
>3cji_A Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus}
Probab=25.09 E-value=43 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=20.2
Q ss_pred ceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 65 CRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 65 pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
.-|.-+|++.+-.-.. ..-.+-|+|+|.+||+.
T Consensus 116 FTY~rfDlEvTvv~~~-~~~~~qvmyvPpGaP~p 148 (263)
T 3cji_A 116 FTYFRSDLEVTVVSLE-PDLEFAVGWFPSGSEYQ 148 (263)
T ss_dssp EEEEEEEEEEEEEESS-TTCCCEEEEECTTCCCC
T ss_pred ceEeeccEEEEEEECC-CCcEEEEEEeCCCCCCc
Confidence 4677777776532111 11234699999999854
No 43
>1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB initio phase DETE icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1} SCOP: b.121.4.1 PDB: 1nn8_1 1pov_1* 1asj_1* 1po1_1* 1po2_1* 1ar9_1* 1vbd_1* 1al2_1* 1ar7_1* 1ar8_1* 1ar6_1* 2plv_1* 3epc_1* 1dgi_1 3iyb_1 3iyc_1 1eah_1* 1xyr_1 3epf_1* 1pvc_1* ...
Probab=24.80 E-value=72 Score=23.87 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.8
Q ss_pred EEEEEEcCCCcccc
Q 033197 85 IFFIAWSPDTARVR 98 (125)
Q Consensus 85 lvfI~w~P~~a~vk 98 (125)
.+-|+|+|.+||+-
T Consensus 154 ~~QvmyvPPGap~p 167 (302)
T 1hxs_1 154 VYQIMYVPPGAPVP 167 (302)
T ss_dssp EEEEEEECTTSCCC
T ss_pred EEEEEEeCCCCCCC
Confidence 35699999999986
No 44
>2wzr_1 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase, nucleotidyltransferase, HOST cytoplasmic vesicle, capsid protein; 3.00A {Foot-and-mouth disease virus}
Probab=24.55 E-value=34 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.479 Sum_probs=20.2
Q ss_pred CceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 64 ~pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
-.-|..+|++.+--- .. .-|+|+|.+||+.
T Consensus 69 ~FTY~rfDlEvtiv~----~~-~qvmyvPpGaP~p 98 (219)
T 2wzr_1 69 AATYYFSDLEVACVG----TN-AWVGWTPNGSPVL 98 (219)
T ss_dssp TEEEEEEEEEEEEES----SC-SCCEEECTTCCCC
T ss_pred ecEEEeccEEEEEEe----cC-CEEEEECCCCCCC
Confidence 456888888766211 11 3689999999875
No 45
>1zba_1 Coat protein VP1; oligosaccharide receptor, virus/viral protein, icosahedral V virus; HET: SGN IDS; 2.00A {Foot-and-mouth disease virus} PDB: 1zbe_1
Probab=24.46 E-value=47 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CceEEEEEeeeecCCCceeccEEEEEEcCCCcccc
Q 033197 64 ECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVR 98 (125)
Q Consensus 64 ~pry~~~~~~~~~~~~~~~~klvfI~w~P~~a~vk 98 (125)
-.-|..+|++.+-.. . .-|+|+|.+||+.
T Consensus 68 ~FTY~rfDlEvtvv~----~--~qvmyvPpGAP~p 96 (212)
T 1zba_1 68 AATYYFSDLEIVVRH----D--GNLTWVPNGAPEA 96 (212)
T ss_dssp TEEEEEEEEEEEEEE----E--SCEEEECTTCCGG
T ss_pred cceEEeeeEEEEEEE----e--eEEEEECCCCCcc
Confidence 456888888766321 1 4789999999976
No 46
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=22.37 E-value=66 Score=20.53 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=10.9
Q ss_pred eeccEEEEEEcCCCc
Q 033197 81 QKSRIFFIAWSPDTA 95 (125)
Q Consensus 81 ~~~klvfI~w~P~~a 95 (125)
...-+++..|.|++-
T Consensus 98 e~dylmL~~WLpe~p 112 (113)
T 3fxt_A 98 ESDSSTLTLWLREGP 112 (113)
T ss_dssp EBTEEEEEEECCC--
T ss_pred CCCeEEEEEecCcCC
Confidence 345899999999863
No 47
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=22.23 E-value=85 Score=18.15 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=20.8
Q ss_pred cCceeCHHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCC-CCHHHHHhcCCCC
Q 033197 6 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT-QTYEDFAASLPAE 63 (125)
Q Consensus 6 SGi~vs~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~-~~~~e~~~~L~~~ 63 (125)
-+|.++.++.+++. ++.+. .+.+.+.+ +.|++....... .+++++++.+.++
T Consensus 13 ~~v~iPk~~~~~lg-l~~gd---~v~i~~~~--~~iii~p~~~~~~~~l~~ll~~~~~~ 65 (82)
T 1mvf_D 13 PAVRIPATLMQALN-LNIDD---EVKIDLVD--GKLIIEPVRKEPVFTLAELVNDITPE 65 (82)
T ss_dssp EEEECCHHHHHHTT-CCTTC---BEEEEEET--TEEEEEEC------------------
T ss_pred cEEEECHHHHHHcC-CCCCC---EEEEEEEC--CEEEEEECCCCCcCCHHHHHhhcccc
Confidence 46788888876642 22232 34445555 578887654322 4788888888754
No 48
>2ws9_1 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_1 2xbo_1*
Probab=22.17 E-value=60 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=21.5
Q ss_pred CceEEEEEeeeecCCCce------eccEEEEEEcCCCcccc
Q 033197 64 ECRYAVYDYDFVTAENCQ------KSRIFFIAWSPDTARVR 98 (125)
Q Consensus 64 ~pry~~~~~~~~~~~~~~------~~klvfI~w~P~~a~vk 98 (125)
-.-|..+|++.+-.-... ...++-|+|+|.+||+.
T Consensus 74 ~FTY~rfDlEvtvv~t~~~~~~~~~~~~~qvmyvPpGaP~p 114 (246)
T 2ws9_1 74 TCTYFFSDLELSIQFKFTTTPSSVGEGFVWVKWFPVGAPTK 114 (246)
T ss_dssp TSSEEECCEEEEECCEESSCGGGCSSCEEEEEEECTTCCCC
T ss_pred ccEEeeccEEEEEEEcCCCcccccccceeEEEEECCCCCcC
Confidence 346888888776321100 01124699999999976
No 49
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=21.44 E-value=1.6e+02 Score=18.32 Aligned_cols=59 Identities=10% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEeCCCceEEEeeeCCCCCCHHHHHhcCCCCCceEEEEE
Q 033197 12 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYD 71 (125)
Q Consensus 12 ~e~~~~~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~ 71 (125)
-++..++.++..-.+.+-.+..++.+.+.+.+.-.|. +-+|+++.+.+.+-.+.-.=.|
T Consensus 22 ~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~-~id~d~I~~~IE~~Gg~IHSID 80 (97)
T 2raq_A 22 PEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGN-DLDFDEITRAIESYGGSIHSVD 80 (97)
T ss_dssp HHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECS-SCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCCeEEeee
Confidence 3566666777666678888999999888888777775 5799999888776555433333
No 50
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=20.09 E-value=76 Score=23.36 Aligned_cols=26 Identities=4% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCHHHHHhcCCCCCceEEEEEeeeec
Q 033197 51 QTYEDFAASLPAEECRYAVYDYDFVT 76 (125)
Q Consensus 51 ~~~~e~~~~L~~~~pry~~~~~~~~~ 76 (125)
.+|.++...+....++|.+||+-+-+
T Consensus 91 ~~F~~l~~r~~~~~~~~~vFDll~~~ 116 (310)
T 1vs0_A 91 PSFSQMQNRGRDTRVEFWAFDLLYLD 116 (310)
T ss_dssp BCHHHHHTCCTTSCCEEEEEEEEEET
T ss_pred cCHHHHHhhccCCcEEEEEEEeEEEC
Confidence 37999888887778999999998764
Done!