BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033198
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9F|A Chain A, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|1X9F|E Chain E, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|1X9F|I Chain I, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|2GTL|A Chain A, Lumbricus Erythrocruorin At 3.5a Resolution
pdb|2GTL|E Chain E, Lumbricus Erythrocruorin At 3.5a Resolution
pdb|2GTL|I Chain I, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 151
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 102 SMLDKYVAVLESKMQSLYQHHPTS 125
S D+ VA++ + L++H+PTS
Sbjct: 26 SFTDRRVAIVRAVFDDLFKHYPTS 49
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 28 SAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQ 86
S M+ S L GT + E + V + Y+G G V A KSGS D Y Q+
Sbjct: 232 SVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGA----------MKSGSGDRYFQE 280
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 28 SAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQ 86
S M+ S L GT + E + V + Y+G G V A KSGS D Y Q+
Sbjct: 271 SVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGA----------MKSGSGDRYFQE 319
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%)
Query: 42 LELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101
+E++++M R+ E K G A ++V +KK F + + ++DS + ++
Sbjct: 171 IEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGIL 230
Query: 102 SMLDKYVAVLESKMQSL 118
S++ ++ ++SL
Sbjct: 231 SLVTNDRGAIDDVLESL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,218,946
Number of Sequences: 62578
Number of extensions: 106206
Number of successful extensions: 302
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 33
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)