BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033198
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4K657|BL1S2_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1
Length = 127
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 10 TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF 69
++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY GDVAAGLRVF
Sbjct: 2 ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVF 61
Query: 70 VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
EQ+K KSG DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct: 62 AEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113
>sp|Q54Y67|BL1S2_DICDI Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Dictyostelium discoideum GN=bloc1s2 PE=3 SV=2
Length = 234
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%)
Query: 7 EPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGL 66
+P ++L S ++FT VS+ +KSEL T + LL +MN + +Y+ +V GL
Sbjct: 69 KPILPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGL 128
Query: 67 RVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
VF+ LK K F Y +I+ +++ VT E + +LD+Y LE K++++
Sbjct: 129 SVFMGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180
>sp|Q66KB9|BL1S2_XENTR Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Xenopus tropicalis GN=bloc1s2 PE=2 SV=1
Length = 147
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L
Sbjct: 41 DINELCRDMFSKMALYLTGELTTTSEDYKLLENMNKLTSLKYMEMKDIAGNISRNLKDLN 100
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
KK S Y++QI+ IE+QV E LD Y LE+K + L
Sbjct: 101 KKYASLQPYLEQINQIEEQVASLENAAYKLDAYSKRLEAKFKKL 144
>sp|Q32WR5|BL1S2_RAT Biogenesis of lysosome-related organelles complex-1 subunit 2
OS=Rattus norvegicus GN=Bloc1s2 PE=2 SV=1
Length = 142
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L
Sbjct: 36 DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
+K Y+ QI+ IE+QV E LD Y LE+K + L
Sbjct: 96 QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
>sp|Q9CWG9|BL1S2_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Mus musculus GN=Bloc1s2 PE=1 SV=1
Length = 143
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L
Sbjct: 37 DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 96
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
+K Y+ QI+ IE+QV E LD Y LE+K + L
Sbjct: 97 QKYAELQPYLDQINMIEEQVAALEQAAYKLDAYSKKLEAKYKKL 140
>sp|Q6QNY1|BL1S2_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1
Length = 142
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L
Sbjct: 36 DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
+K Y+ QI+ IE+QV E LD Y LE+K + L
Sbjct: 96 QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
>sp|Q4R7C8|BL1S2_MACFA Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Macaca fascicularis GN=BLOC1S2 PE=2 SV=1
Length = 142
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
++ E D+F+ ++ + EL T+ +LLE MN + +Y D+A + ++ L
Sbjct: 36 DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
+K Y+ QI+ IE+QV E LD Y LE+K + L
Sbjct: 96 QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139
>sp|A7RZS0|BL1S2_NEMVE Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Nematostella vectensis GN=bloc1s2 PE=3 SV=1
Length = 171
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
+L E+ F ++ + EL + LLE++N ++YK + L +E+L
Sbjct: 65 DLKETCRVAFDKITQYLNGELTASLEDYTLLEQLNNLTTDKYKEMSTMTKSLITTMEKLD 124
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
K S Y++QID IE V+ E LD Y LE+K + L
Sbjct: 125 DKYKSLQPYLEQIDRIEDSVSSLEQAAYRLDAYSKKLENKFKRL 168
>sp|Q95XD3|BL1S2_CAEEL Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Caenorhabditis elegans GN=blos-2 PE=1 SV=1
Length = 132
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
+LA+++ D V + +L+G+ +LLE MN A+ Y VA + ++ L
Sbjct: 27 QLADNMTD---KVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDMKVVAEKVAGKLDNLN 83
Query: 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
+K + Y+ QID++++ + E ++L+ YV LESK+ ++ Q
Sbjct: 84 QKYENLRPYLSQIDAMDESTRRLEEATAVLENYVTQLESKLTNIQQQ 130
>sp|Q9VTE0|BL1S2_DROME Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Drosophila melanogaster GN=blos2 PE=1 SV=2
Length = 159
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 23 LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE 82
+F + EL +LLE+MN +YK +A L +L K
Sbjct: 52 MFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENLNTSTSELSLKFQQLAP 111
Query: 83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
+QQID I V + EA LD Y LE++++ + Q
Sbjct: 112 MMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQ 149
>sp|B6EMN4|CAPP_ALISL Phosphoenolpyruvate carboxylase OS=Aliivibrio salmonicida (strain
LFI1238) GN=ppc PE=3 SV=1
Length = 876
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 1 MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYK--- 57
+AG + EP +L LND ++ A +K EL L E++ L + Y+
Sbjct: 302 LAGDQHEPYRAILKQLRTLLNDTLENLDAQMKGELTNNKPILRNAEQLWLPLHACYQSLH 361
Query: 58 --GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110
G G +A G ++ L++ +F ++ ++D I Q+ T+ V+S L +Y+ +
Sbjct: 362 ACGMGIIAEG--SLLDTLRRVK-AFGAHLVRLD-IRQESTRHSNVLSELTRYLGI 412
>sp|Q00104|VG46_ICHVA Probable major glycoprotein OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF46 PE=4 SV=1
Length = 1355
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 20 LNDLFTSVSAMVKSELQGTNNTLELLE-KMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSG 78
L D +SA + ++ N ++ L+ ++NL++ F +A GL+ ++ G
Sbjct: 990 LGDSIALISAKLDRNIRAVNGRVDDLQNQINLQMLAMDTNFKRLATGLKELGTTTNERLG 1049
Query: 79 ---SFDEYVQQIDSIEQQVTQ 96
++ ++ QQI S+ QVTQ
Sbjct: 1050 EVMAYQQWYQQIMSLTNQVTQ 1070
>sp|A3QEP3|RUVB_SHELP Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=ruvB PE=3 SV=1
Length = 337
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 30 MVKSELQGTNNTLELLEK-MNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+V ++ QGT E +++ M ++ +EY G D A L+VF+E +K+ + D
Sbjct: 7 LVHAQPQGTEERDEQIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALD 59
>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium
discoideum GN=vps45 PE=1 SV=1
Length = 563
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 56 YKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV---TQFEAVISMLDKYVAVLE 112
YK FGD+ A ++ V+Q + K + ++ +Q ID +++ + F+ + + K+V++++
Sbjct: 280 YKNFGDLGASIKDLVDQFQDKMNT-NQNIQTIDDMKKFIENYPNFQKFSTTVSKHVSLMD 338
>sp|A4Y6S9|RUVB_SHEPC Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ruvB PE=3
SV=1
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+++ +LQG ++ ++ M ++ +EY G D A L+VF++ K ++ + D
Sbjct: 7 LIQPQLQGQDDVVD--RAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALD 56
>sp|O58687|RAD50_PYRHO DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=rad50 PE=3 SV=1
Length = 879
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 16 LAESLNDL--FTSVSAMVKSELQGTNNTLELLE-------KMNLRVAEEYKGFGDVAAGL 66
E LN++ +S ++ EL+G ++ LE ++ LR+ E G + +
Sbjct: 205 FTEVLNEIRNISSNLPRLRRELEGIKEEVKTLEATFNSITELKLRLGELNGKKGRLEERI 264
Query: 67 RVF---VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109
R +E+ +KKS +E V+++ +E++ T++ +I D+Y+
Sbjct: 265 RQLESGIEEKRKKSKELEEVVKELPELEKKETEYRRLIEFKDEYLV 310
>sp|A0KWL9|RUVB_SHESA Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
sp. (strain ANA-3) GN=ruvB PE=3 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+++ +LQG ++ ++ M ++ +EY G D A L+VF++ K + + D
Sbjct: 7 LIQPQLQGQDDVID--RAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALD 56
>sp|Q8EEF3|RUVB_SHEON Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
oneidensis (strain MR-1) GN=ruvB PE=3 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+++ +LQG ++ ++ M ++ +EY G D A L+VF++ K + + D
Sbjct: 7 LIQPQLQGQDDVID--RAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALD 56
>sp|Q0HIZ1|RUVB_SHESM Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
sp. (strain MR-4) GN=ruvB PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+++ +LQG ++ ++ M ++ +EY G D A L+VF++ K + + D
Sbjct: 7 LIQPQLQGQDDVID--RAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALD 56
>sp|Q0HUZ1|RUVB_SHESR Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella
sp. (strain MR-7) GN=ruvB PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81
+++ +LQG ++ ++ M ++ +EY G D A L+VF++ K + + D
Sbjct: 7 LIQPQLQGQDDVID--RAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALD 56
>sp|A4SJD4|SYE_AERS4 Glutamate--tRNA ligase OS=Aeromonas salmonicida (strain A449)
GN=gltX PE=3 SV=1
Length = 471
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 11 EARDELA--ESLNDLFTSVSAMVKSELQG--TNNTLELLEKMNLRVAEEYKGFGDVAAGL 66
EA DE A + L + A+ K++L T T L E + AE +G G V L
Sbjct: 369 EAIDEAAAKKHLRGVAAEPLALAKAKLTALDTWTTEALHELIEATAAELGQGMGKVGMPL 428
Query: 67 RVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQS 117
RV V L + G ID++ V + E V++ +D+ +A +E++M +
Sbjct: 429 RVAVTGLGQSPG--------IDAVMALVGK-ERVLARIDRALAYIEARMAA 470
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 4 KEEEPKTEARDE---LAESLNDLFTSVSAM--VKSELQGTNNTLELLEKMNLRVAEEYKG 58
K+ P E D + LNDL T + VKS+LQG + + LLE+M +
Sbjct: 1811 KDSSPAEECDDCDSCVMTLLNDLATMGEQLRLVKSQLQGLSASAGLLEQMRHMETQ---- 1866
Query: 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
A LR QL + + +I+ +E+++T L + V K Q+L
Sbjct: 1867 ----AKDLR---NQLLNYRSAISNHGSKIEGLERELTDLNQEFETLQEKAQVNSRKAQTL 1919
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 19 SLNDLFTSVSAMVKSELQGTNNTLELLEK-------MNLRVAEEYKGFGDV------AAG 65
SL FT S L TN L+L+EK + + E + D +AG
Sbjct: 2075 SLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG 2134
Query: 66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109
VE+ +K + S E +Q++ I++ + E V +D A
Sbjct: 2135 KTSLVEEAEKHARSLQELAKQLEEIKRNASGDELVRCAVDAATA 2178
>sp|P52734|FGD1_MOUSE FYVE, RhoGEF and PH domain-containing protein 1 OS=Mus musculus
GN=Fgd1 PE=1 SV=2
Length = 960
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 44 LLEKMNLRVAE--EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101
LL ++ R+ E Y GD+ L F++ + +FD V+ +++ ++ TQF+ +I
Sbjct: 435 LLPELEKRMEEWDRYPRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQFKVII 494
Query: 102 SMLDK 106
+ K
Sbjct: 495 HEVQK 499
>sp|Q6CL89|SPC42_KLULA Spindle pole body component SPC42 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SPC42 PE=3 SV=1
Length = 316
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKM 115
FG+ A R+ E+ K S +E ++Q + +QVT+ + I L+ + +K+
Sbjct: 13 FGNNDANERIVPEEYKYNSSMINELIKQNKDLHKQVTEKQEEIDRLNVLIGSFRAKL 69
>sp|P98174|FGD1_HUMAN FYVE, RhoGEF and PH domain-containing protein 1 OS=Homo sapiens
GN=FGD1 PE=1 SV=2
Length = 961
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 44 LLEKMNLRVAE--EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101
LL ++ R+ E Y GD+ L F++ + +FD V+ +++ ++ TQF+ +I
Sbjct: 436 LLPELEKRMEEWDRYPRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQFKVII 495
Query: 102 SMLDK 106
+ K
Sbjct: 496 HEVQK 500
>sp|Q5E2E3|CAPP_VIBF1 Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=ppc PE=3 SV=1
Length = 876
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 1 MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYK--- 57
+AG + EP +L L D S+ A +K EL L +++ + Y+
Sbjct: 302 LAGDQHEPYRAILKQLRTLLGDTLESLDAQMKGELAPNKVILTDADQLWNPLYACYQSLH 361
Query: 58 --GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110
G G +A G ++ L++ +F ++ ++D I Q+ T+ V+S L +Y+ +
Sbjct: 362 ACGMGIIADG--SLLDTLRRVK-AFGAHLVRLD-IRQESTRHSDVLSELTRYLGI 412
>sp|Q8VZC7|DRL36_ARATH Probable disease resistance protein At5g45510 OS=Arabidopsis
thaliana GN=At5g45510 PE=1 SV=2
Length = 1222
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 2 AGKEEEPKTEARDELAE--------SLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVA 53
+ +EEP+++AR + E +++DL+ S + + Q TN + +LLE NL+ A
Sbjct: 301 SADKEEPESQARVKTEEKHEKVVPPTIDDLWGSTNTYGEITFQTTNESQDLLESFNLKEA 360
Query: 54 E 54
E
Sbjct: 361 E 361
>sp|B5FBP8|CAPP_VIBFM Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain MJ11)
GN=ppc PE=3 SV=1
Length = 876
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 1 MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYK--- 57
+AG + EP +L L D S+ A +K EL L +++ + Y+
Sbjct: 302 LAGDQHEPYRAILKQLRTLLGDTLESLDAQMKGELVPNKAILTDADQLWNPLYACYQSLH 361
Query: 58 --GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110
G G +A G ++ L++ +F ++ ++D I Q+ T+ V+S L +Y+ +
Sbjct: 362 ACGMGIIADG--SLLDTLRRVK-AFGAHLVRLD-IRQESTRHSDVLSELTRYLGI 412
>sp|Q874L7|MAD1_KLUDE Spindle assembly checkpoint component MAD1 OS=Kluyveromyces
delphensis GN=MAD1 PE=3 SV=1
Length = 674
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 45 LEKMNLRVAEEYK---GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101
LE+ N+R AEE K + A R EQL+++ +E QQ + ++ ++ + + I
Sbjct: 224 LEQSNMRQAEELKRLKSLKESATFWRSENEQLQERIRQLEEVEQQYNEVQLEILELKVNI 283
Query: 102 SMLDKYV 108
S D+++
Sbjct: 284 SEWDRFL 290
>sp|Q97K92|FPRA1_CLOAB Flavo-diiron protein FprA1 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=fprA1 PE=1 SV=1
Length = 392
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 16 LAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNL 50
L E +ND F S+ AM EL NTLE + NL
Sbjct: 110 LKEIVNDEFNSLDAMEVKELNLGKNTLEFISAPNL 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,247,941
Number of Sequences: 539616
Number of extensions: 1384698
Number of successful extensions: 6043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 5929
Number of HSP's gapped (non-prelim): 260
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)