Query 033198
Match_columns 125
No_of_seqs 75 out of 77
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10046 BLOC1_2: Biogenesis o 100.0 8E-37 1.7E-41 215.3 13.6 99 20-118 1-99 (99)
2 KOG4559 Uncharacterized conser 100.0 8.2E-28 1.8E-32 172.1 12.0 94 15-108 26-119 (120)
3 PF10157 DUF2365: Uncharacteri 95.2 0.96 2.1E-05 34.3 12.7 87 14-100 62-148 (149)
4 PF04012 PspA_IM30: PspA/IM30 90.9 6.2 0.00013 30.5 14.1 98 23-120 2-133 (221)
5 PRK10698 phage shock protein P 90.3 7.7 0.00017 30.7 12.8 39 83-121 97-135 (222)
6 KOG0980 Actin-binding protein 86.8 15 0.00033 35.3 12.1 86 32-117 402-491 (980)
7 PF06103 DUF948: Bacterial pro 86.5 7.7 0.00017 26.0 8.2 50 49-98 39-88 (90)
8 PF09403 FadA: Adhesion protei 85.9 12 0.00026 27.7 11.7 89 29-120 23-114 (126)
9 PF06825 HSBP1: Heat shock fac 85.0 3.6 7.9E-05 26.3 5.2 44 61-104 3-47 (54)
10 PF10398 DUF2443: Protein of u 84.7 5.1 0.00011 27.5 6.1 76 23-111 1-76 (79)
11 PF10146 zf-C4H2: Zinc finger- 84.4 20 0.00043 28.9 12.6 70 50-119 18-87 (230)
12 PRK15365 type III secretion sy 83.4 12 0.00025 27.1 7.7 26 69-94 10-35 (107)
13 PF13094 CENP-Q: CENP-Q, a CEN 83.0 13 0.00028 27.6 8.3 43 78-120 34-76 (160)
14 PF15358 TSKS: Testis-specific 81.8 14 0.0003 33.0 9.1 74 49-122 134-211 (558)
15 PF10779 XhlA: Haemolysin XhlA 81.6 7.6 0.00017 25.4 5.9 34 85-118 13-46 (71)
16 PRK11637 AmiB activator; Provi 81.6 32 0.0007 29.3 13.9 33 87-119 221-253 (428)
17 PF04912 Dynamitin: Dynamitin 80.5 24 0.00052 29.9 10.0 23 97-119 366-388 (388)
18 PF02994 Transposase_22: L1 tr 80.4 7.1 0.00015 33.2 6.8 37 85-121 144-187 (370)
19 TIGR02132 phaR_Bmeg polyhydrox 80.0 11 0.00024 29.8 7.2 64 43-106 61-128 (189)
20 PF07058 Myosin_HC-like: Myosi 80.0 18 0.00039 31.0 8.9 72 31-102 12-83 (351)
21 TIGR02977 phageshock_pspA phag 77.8 31 0.00068 26.9 13.7 41 81-121 95-135 (219)
22 PRK14011 prefoldin subunit alp 75.9 15 0.00032 27.6 6.7 42 71-112 3-44 (144)
23 PF00261 Tropomyosin: Tropomyo 75.5 38 0.00082 26.7 13.3 82 30-114 124-205 (237)
24 COG4768 Uncharacterized protei 75.4 33 0.00072 26.0 8.8 64 25-106 37-101 (139)
25 PF07544 Med9: RNA polymerase 74.4 12 0.00026 25.3 5.4 58 60-117 20-77 (83)
26 TIGR03185 DNA_S_dndD DNA sulfu 74.2 66 0.0014 29.1 11.5 54 53-106 390-449 (650)
27 PRK10807 paraquat-inducible pr 73.6 59 0.0013 29.2 10.9 108 14-121 416-533 (547)
28 PRK11637 AmiB activator; Provi 73.5 57 0.0012 27.8 11.5 21 103-123 118-138 (428)
29 PF06657 Cep57_MT_bd: Centroso 73.4 25 0.00055 23.7 6.9 63 57-120 13-75 (79)
30 PF00261 Tropomyosin: Tropomyo 73.2 44 0.00095 26.4 12.2 50 35-84 73-122 (237)
31 PF11932 DUF3450: Protein of u 70.9 51 0.0011 26.1 9.3 53 53-108 55-107 (251)
32 PHA02562 46 endonuclease subun 70.5 70 0.0015 27.6 12.5 39 80-118 353-391 (562)
33 PF04102 SlyX: SlyX; InterPro 70.4 22 0.00047 23.2 5.7 34 86-119 19-52 (69)
34 PF02994 Transposase_22: L1 tr 70.2 13 0.00029 31.6 5.9 29 87-115 160-188 (370)
35 TIGR03513 GldL_gliding gliding 68.7 59 0.0013 26.0 13.2 87 21-112 102-189 (202)
36 PF10779 XhlA: Haemolysin XhlA 68.7 29 0.00064 22.5 6.5 37 83-119 4-40 (71)
37 PF03915 AIP3: Actin interacti 68.5 83 0.0018 27.7 11.8 101 15-115 173-276 (424)
38 smart00787 Spc7 Spc7 kinetocho 68.2 71 0.0015 26.8 13.1 90 31-120 156-260 (312)
39 KOG0804 Cytoplasmic Zn-finger 68.0 93 0.002 28.0 13.3 69 25-93 339-407 (493)
40 PF07195 FliD_C: Flagellar hoo 67.9 55 0.0012 25.7 8.6 36 82-120 197-232 (239)
41 PF06320 GCN5L1: GCN5-like pro 67.2 46 0.00099 24.2 10.0 70 46-119 36-105 (121)
42 PF14193 DUF4315: Domain of un 66.4 23 0.0005 24.4 5.4 35 86-120 2-36 (83)
43 PHA03395 p10 fibrous body prot 66.2 22 0.00048 24.9 5.3 46 52-97 16-61 (87)
44 PF08656 DASH_Dad3: DASH compl 65.9 21 0.00045 24.4 5.0 45 51-95 7-51 (78)
45 TIGR02977 phageshock_pspA phag 64.2 67 0.0015 25.1 9.7 40 82-121 163-203 (219)
46 PRK00736 hypothetical protein; 64.0 31 0.00068 22.5 5.5 12 107-118 41-52 (68)
47 TIGR00606 rad50 rad50. This fa 64.0 1.5E+02 0.0033 29.2 12.7 81 31-111 827-907 (1311)
48 PRK04325 hypothetical protein; 63.7 31 0.00068 22.9 5.5 25 94-118 32-56 (74)
49 COG1382 GimC Prefoldin, chaper 63.2 22 0.00047 26.2 5.1 25 97-121 68-92 (119)
50 PRK03918 chromosome segregatio 63.1 1.2E+02 0.0027 27.7 13.1 30 86-115 246-275 (880)
51 PF03310 Cauli_DNA-bind: Cauli 62.8 32 0.0007 25.5 5.9 57 61-117 3-69 (121)
52 PRK02793 phi X174 lysis protei 62.4 35 0.00075 22.6 5.5 32 88-119 25-56 (72)
53 PRK00295 hypothetical protein; 62.0 37 0.00079 22.2 5.5 32 88-119 22-53 (68)
54 COG1463 Ttg2C ABC-type transpo 61.7 86 0.0019 26.3 9.0 44 44-87 163-206 (359)
55 PF10018 Med4: Vitamin-D-recep 61.3 70 0.0015 24.5 7.8 35 85-119 22-56 (188)
56 PF04156 IncA: IncA protein; 61.1 67 0.0014 24.0 12.8 46 75-120 141-186 (191)
57 PRK10698 phage shock protein P 60.8 82 0.0018 24.9 8.6 41 81-121 162-203 (222)
58 COG1382 GimC Prefoldin, chaper 60.0 67 0.0014 23.6 8.4 33 87-119 72-104 (119)
59 PF12718 Tropomyosin_1: Tropom 59.8 69 0.0015 23.7 13.7 91 27-121 43-137 (143)
60 PF15272 BBP1_C: Spindle pole 59.7 88 0.0019 24.9 8.8 54 54-111 72-126 (196)
61 COG1730 GIM5 Predicted prefold 58.7 54 0.0012 24.7 6.7 43 71-113 6-48 (145)
62 PF04380 BMFP: Membrane fusoge 58.6 53 0.0011 22.0 7.0 31 44-74 40-70 (79)
63 PF05531 NPV_P10: Nucleopolyhe 58.5 56 0.0012 22.2 7.2 15 66-80 9-23 (75)
64 PRK04778 septation ring format 58.2 1.2E+02 0.0027 27.0 9.9 57 34-91 356-413 (569)
65 PRK08032 fliD flagellar cappin 57.4 1.2E+02 0.0026 26.4 9.5 35 82-119 410-444 (462)
66 PHA02675 ORF104 fusion protein 57.3 19 0.00042 25.2 3.7 34 89-122 34-67 (90)
67 PRK04406 hypothetical protein; 57.2 47 0.001 22.2 5.5 16 103-118 43-58 (75)
68 TIGR00996 Mtu_fam_mce virulenc 56.9 98 0.0021 24.6 13.3 21 93-113 260-280 (291)
69 cd04779 HTH_MerR-like_sg4 Heli 56.9 61 0.0013 23.8 6.6 31 82-112 78-108 (134)
70 KOG0250 DNA repair protein RAD 56.5 2.1E+02 0.0046 28.3 14.8 105 15-119 256-364 (1074)
71 PF06103 DUF948: Bacterial pro 56.5 57 0.0012 21.7 9.4 58 46-103 29-86 (90)
72 PRK15374 pathogenicity island 56.4 1.7E+02 0.0036 27.1 11.8 92 17-112 115-210 (593)
73 COG1730 GIM5 Predicted prefold 56.0 59 0.0013 24.5 6.5 62 59-120 75-136 (145)
74 PF10046 BLOC1_2: Biogenesis o 54.4 70 0.0015 22.1 10.6 14 100-113 74-87 (99)
75 PF14131 DUF4298: Domain of un 53.4 69 0.0015 21.9 6.0 37 71-107 3-39 (90)
76 COG4026 Uncharacterized protei 51.9 1.4E+02 0.003 24.8 8.8 35 85-119 170-204 (290)
77 PF11433 DUF3198: Protein of u 51.5 42 0.00091 21.2 4.2 25 92-116 21-46 (51)
78 TIGR00996 Mtu_fam_mce virulenc 51.0 1.2E+02 0.0027 24.0 10.8 30 58-87 189-218 (291)
79 PF15466 DUF4635: Domain of un 50.7 32 0.00069 25.7 4.2 23 89-111 102-124 (135)
80 PF05615 THOC7: Tho complex su 50.4 93 0.002 22.4 9.5 75 35-112 58-133 (139)
81 PF05531 NPV_P10: Nucleopolyhe 50.4 78 0.0017 21.5 7.7 15 85-99 42-56 (75)
82 PF05266 DUF724: Protein of un 50.1 1.2E+02 0.0026 23.6 11.4 28 90-117 157-184 (190)
83 PRK07857 hypothetical protein; 50.0 20 0.00044 25.8 3.0 20 78-97 28-47 (106)
84 smart00787 Spc7 Spc7 kinetocho 49.7 1.6E+02 0.0034 24.7 15.8 19 16-34 111-129 (312)
85 PRK02119 hypothetical protein; 49.6 75 0.0016 21.1 6.2 15 104-118 42-56 (73)
86 PF02346 Vac_Fusion: Chordopox 49.6 60 0.0013 20.9 4.9 32 89-120 5-36 (57)
87 COG4942 Membrane-bound metallo 49.4 1.7E+02 0.0036 25.9 9.0 36 85-120 73-108 (420)
88 PLN02939 transferase, transfer 49.3 1E+02 0.0023 30.0 8.3 54 66-119 231-284 (977)
89 PF00512 HisKA: His Kinase A ( 48.8 59 0.0013 19.7 5.7 53 57-109 11-64 (68)
90 PRK09793 methyl-accepting prot 48.8 1.8E+02 0.004 25.3 16.8 31 3-33 389-419 (533)
91 COG1842 PspA Phage shock prote 48.8 1.4E+02 0.003 23.9 14.2 98 23-120 3-134 (225)
92 PRK09039 hypothetical protein; 48.7 1.6E+02 0.0036 24.7 15.8 91 29-119 77-178 (343)
93 TIGR01795 CM_mono_cladeE monof 48.3 23 0.00051 24.5 3.0 20 78-97 3-22 (94)
94 PF06160 EzrA: Septation ring 48.2 2E+02 0.0044 25.7 14.0 57 58-114 158-223 (560)
95 PF09730 BicD: Microtubule-ass 48.2 2.4E+02 0.0053 26.6 11.5 69 52-120 357-433 (717)
96 PF03961 DUF342: Protein of un 48.1 1.8E+02 0.0039 25.0 9.2 36 83-118 373-408 (451)
97 PF03670 UPF0184: Uncharacteri 47.9 72 0.0016 22.1 5.3 31 55-85 27-57 (83)
98 PRK00846 hypothetical protein; 47.6 87 0.0019 21.3 6.5 33 87-119 29-61 (77)
99 KOG0996 Structural maintenance 47.4 3.2E+02 0.0069 27.6 12.2 74 29-102 496-573 (1293)
100 TIGR01801 CM_A chorismate muta 47.4 23 0.00051 24.8 2.9 19 79-97 5-23 (102)
101 PF01496 V_ATPase_I: V-type AT 47.3 6.3 0.00014 36.2 0.0 36 86-121 68-103 (759)
102 COG5420 Uncharacterized conser 47.3 85 0.0018 21.0 6.4 55 45-99 15-69 (71)
103 PF12308 Noelin-1: Neurogenesi 47.2 84 0.0018 22.6 5.7 21 101-121 70-90 (101)
104 PRK07248 hypothetical protein; 47.2 24 0.00051 23.6 2.9 18 80-97 3-20 (87)
105 PRK14011 prefoldin subunit alp 46.8 1E+02 0.0022 23.1 6.4 44 80-123 90-137 (144)
106 PRK15048 methyl-accepting chem 46.7 1.9E+02 0.0042 25.0 16.8 31 3-33 391-421 (553)
107 PRK06285 chorismate mutase; Pr 46.6 26 0.00057 24.0 3.1 20 78-97 7-26 (96)
108 PF00170 bZIP_1: bZIP transcri 46.2 72 0.0016 20.0 4.9 33 86-118 27-59 (64)
109 COG5158 SEC1 Proteins involved 46.0 2.1E+02 0.0046 26.3 9.4 94 17-110 280-381 (582)
110 PRK00965 tetrahydromethanopter 45.9 22 0.00048 25.3 2.6 17 88-104 34-50 (96)
111 PF04799 Fzo_mitofusin: fzo-li 45.7 1.4E+02 0.0031 23.2 8.7 76 17-98 89-164 (171)
112 PF08317 Spc7: Spc7 kinetochor 45.7 1.7E+02 0.0038 24.1 13.3 30 76-105 235-264 (325)
113 TIGR01805 CM_mono_grmpos monof 45.5 25 0.00054 23.3 2.7 18 80-97 1-18 (81)
114 PF09278 MerR-DNA-bind: MerR, 45.3 45 0.00097 20.5 3.8 25 82-106 40-64 (65)
115 PF08317 Spc7: Spc7 kinetochor 45.2 1.8E+02 0.0038 24.1 14.5 32 88-119 233-264 (325)
116 TIGR01791 CM_archaeal chorisma 45.2 25 0.00054 23.2 2.7 18 80-97 1-18 (83)
117 TIGR01808 CM_M_hiGC-arch monof 45.0 27 0.00058 23.0 2.8 19 79-97 1-19 (74)
118 KOG0980 Actin-binding protein 44.7 2.7E+02 0.0058 27.3 10.1 70 53-122 409-482 (980)
119 COG1842 PspA Phage shock prote 44.1 1.7E+02 0.0036 23.5 9.0 62 44-105 96-157 (225)
120 COG3352 FlaC Putative archaeal 44.0 1.5E+02 0.0032 22.9 7.3 48 55-104 87-134 (157)
121 cd00584 Prefoldin_alpha Prefol 43.8 1E+02 0.0022 21.6 5.9 38 72-109 7-44 (129)
122 PF04380 BMFP: Membrane fusoge 43.8 53 0.0011 22.0 4.1 28 71-98 50-77 (79)
123 TIGR01807 CM_P2 chorismate mut 43.6 28 0.00061 22.7 2.7 18 80-97 1-18 (76)
124 cd04779 HTH_MerR-like_sg4 Heli 43.5 93 0.002 22.8 5.8 31 76-106 79-109 (134)
125 KOG1853 LIS1-interacting prote 43.5 2E+02 0.0044 24.3 11.4 54 68-121 73-127 (333)
126 PRK07075 isochorismate-pyruvat 43.2 31 0.00067 24.1 3.0 20 78-97 8-27 (101)
127 PF14257 DUF4349: Domain of un 43.1 1.7E+02 0.0036 23.2 8.2 47 52-99 130-176 (262)
128 PRK03947 prefoldin subunit alp 43.1 1.2E+02 0.0026 21.7 6.8 36 73-108 8-43 (140)
129 KOG3684 Ca2+-activated K+ chan 43.0 2.1E+02 0.0045 25.9 8.6 69 42-113 396-466 (489)
130 PF07083 DUF1351: Protein of u 42.9 1.6E+02 0.0035 23.1 8.6 67 52-118 37-108 (215)
131 PF12207 DUF3600: Domain of un 42.8 44 0.00096 25.8 4.0 42 69-112 78-119 (162)
132 PF02646 RmuC: RmuC family; I 42.5 1.9E+02 0.0041 23.7 9.6 68 54-121 226-294 (304)
133 PF07889 DUF1664: Protein of u 42.4 1.4E+02 0.003 22.0 11.6 19 88-106 99-117 (126)
134 PRK09343 prefoldin subunit bet 42.1 1.3E+02 0.0028 21.6 6.8 23 94-116 73-95 (121)
135 PF10552 ORF6C: ORF6C domain; 42.0 58 0.0013 23.0 4.4 41 75-115 5-45 (116)
136 PF02996 Prefoldin: Prefoldin 42.0 1.1E+02 0.0024 20.9 6.0 25 80-104 93-117 (120)
137 PF14712 Snapin_Pallidin: Snap 42.0 1E+02 0.0022 20.4 7.8 31 80-110 59-89 (92)
138 PF15112 DUF4559: Domain of un 41.9 1.3E+02 0.0027 25.7 6.9 48 60-107 256-303 (307)
139 PF07106 TBPIP: Tat binding pr 41.9 77 0.0017 23.5 5.2 63 55-120 73-137 (169)
140 cd04769 HTH_MerR2 Helix-Turn-H 41.8 1.2E+02 0.0026 21.1 6.1 61 53-113 49-114 (116)
141 PF05064 Nsp1_C: Nsp1-like C-t 41.6 32 0.0007 24.5 3.0 29 90-118 76-104 (116)
142 cd04776 HTH_GnyR Helix-Turn-He 41.6 1.2E+02 0.0027 21.3 6.8 33 82-114 84-116 (118)
143 KOG1003 Actin filament-coating 41.5 1.9E+02 0.004 23.3 11.5 54 29-82 91-144 (205)
144 KOG0811 SNARE protein PEP12/VA 41.5 1.2E+02 0.0026 25.1 6.7 41 61-101 180-224 (269)
145 KOG2189 Vacuolar H+-ATPase V0 41.2 71 0.0015 30.5 5.8 71 50-120 52-127 (829)
146 PHA02562 46 endonuclease subun 41.2 2.4E+02 0.0051 24.4 15.8 52 53-104 298-349 (562)
147 PF04740 LXG: LXG domain of WX 40.9 1.5E+02 0.0033 22.1 11.5 39 77-115 151-193 (204)
148 cd01109 HTH_YyaN Helix-Turn-He 40.9 1.2E+02 0.0026 20.9 6.1 29 81-109 82-110 (113)
149 PF13422 DUF4110: Domain of un 40.8 41 0.00089 23.7 3.3 68 19-103 17-84 (96)
150 KOG4674 Uncharacterized conser 40.7 4.6E+02 0.01 27.6 13.2 54 24-77 1151-1204(1822)
151 PF05440 MtrB: Tetrahydrometha 40.6 29 0.00062 24.8 2.5 16 88-103 33-48 (97)
152 PF10158 LOH1CR12: Tumour supp 40.3 1.5E+02 0.0032 21.9 12.0 49 53-101 55-103 (131)
153 PF05008 V-SNARE: Vesicle tran 40.3 99 0.0021 19.8 5.6 11 64-74 6-16 (79)
154 TIGR01803 CM-like chorismate m 40.1 33 0.00072 22.7 2.7 18 80-97 1-18 (82)
155 PF05010 TACC: Transforming ac 40.0 1.9E+02 0.0041 23.0 12.2 60 33-95 76-135 (207)
156 COG4942 Membrane-bound metallo 39.9 2.7E+02 0.0058 24.7 9.4 37 35-71 40-76 (420)
157 cd00890 Prefoldin Prefoldin is 39.2 1.3E+02 0.0028 20.7 6.3 40 80-119 89-128 (129)
158 KOG4117 Heat shock factor bind 39.0 1.2E+02 0.0026 20.4 6.6 46 27-75 17-62 (73)
159 PF13747 DUF4164: Domain of un 39.0 1.3E+02 0.0027 20.7 8.7 10 88-97 35-44 (89)
160 TIGR01799 CM_T chorismate muta 38.9 36 0.00078 22.6 2.7 18 80-97 1-18 (83)
161 TIGR02338 gimC_beta prefoldin, 38.7 1.3E+02 0.0029 20.8 9.8 34 85-118 74-107 (110)
162 PF07439 DUF1515: Protein of u 38.7 1.6E+02 0.0034 21.6 7.9 54 57-110 11-65 (112)
163 TIGR00293 prefoldin, archaeal 38.5 1.3E+02 0.0029 21.0 5.8 25 80-104 15-39 (126)
164 PRK08724 fliD flagellar cappin 38.4 3.4E+02 0.0074 25.5 10.0 14 47-60 575-588 (673)
165 cd07639 BAR_ACAP1 The Bin/Amph 38.4 2E+02 0.0043 22.7 12.3 104 12-116 10-122 (200)
166 COG4062 MtrB Tetrahydromethano 38.4 30 0.00065 25.0 2.3 18 87-104 33-50 (108)
167 PRK01203 prefoldin subunit alp 38.4 1.1E+02 0.0024 22.7 5.5 35 85-119 87-121 (130)
168 PF07586 HXXSHH: Protein of un 38.2 61 0.0013 26.3 4.5 24 78-101 184-207 (302)
169 cd00082 HisKA Histidine Kinase 38.2 72 0.0016 17.6 6.8 25 84-108 40-64 (65)
170 PF08775 ParB: ParB family; I 38.1 91 0.002 22.9 5.0 39 37-75 7-45 (127)
171 smart00388 HisKA His Kinase A 38.1 75 0.0016 17.8 5.8 26 84-109 37-62 (66)
172 PF08946 Osmo_CC: Osmosensory 38.0 71 0.0015 19.9 3.7 15 109-123 29-43 (46)
173 PF10473 CENP-F_leu_zip: Leuci 37.6 1.7E+02 0.0038 21.9 13.8 93 23-115 21-117 (140)
174 TIGR02338 gimC_beta prefoldin, 37.5 1.4E+02 0.003 20.7 6.8 40 82-121 64-103 (110)
175 TIGR03185 DNA_S_dndD DNA sulfu 37.4 3.1E+02 0.0068 24.8 13.9 55 60-114 448-502 (650)
176 cd07666 BAR_SNX7 The Bin/Amphi 36.8 54 0.0012 26.6 3.9 67 52-118 52-133 (243)
177 PF03114 BAR: BAR domain; Int 36.4 1.7E+02 0.0036 21.3 14.7 100 14-113 36-156 (229)
178 PF05377 FlaC_arch: Flagella a 36.2 1.2E+02 0.0026 19.5 6.1 16 86-101 22-37 (55)
179 PF07160 DUF1395: Protein of u 36.2 2.3E+02 0.005 22.8 8.2 48 73-120 24-71 (243)
180 cd07307 BAR The Bin/Amphiphysi 36.2 1.5E+02 0.0033 20.7 13.7 58 56-113 56-119 (194)
181 PF13348 Y_phosphatase3C: Tyro 35.9 64 0.0014 20.2 3.4 35 63-97 28-63 (68)
182 TIGR02976 phageshock_pspB phag 35.8 94 0.002 20.9 4.3 43 54-102 24-66 (75)
183 PF11471 Sugarporin_N: Maltopo 35.6 1.1E+02 0.0024 19.6 4.5 31 89-119 29-59 (60)
184 KOG0804 Cytoplasmic Zn-finger 35.4 3.4E+02 0.0074 24.6 9.2 34 52-85 352-385 (493)
185 TIGR01797 CM_P_1 chorismate mu 35.0 44 0.00096 22.2 2.7 17 81-97 2-18 (83)
186 PF09074 Mer2: Mer2; InterPro 35.0 2.3E+02 0.005 22.5 8.1 36 85-120 77-113 (190)
187 PRK15326 type III secretion sy 34.8 88 0.0019 21.5 4.1 31 31-61 43-73 (80)
188 cd07665 BAR_SNX1 The Bin/Amphi 34.7 1.2E+02 0.0025 24.5 5.5 48 66-113 6-57 (234)
189 TIGR03545 conserved hypothetic 34.7 2.7E+02 0.0059 25.3 8.3 8 28-35 152-159 (555)
190 PF11083 Streptin-Immun: Lanti 34.7 79 0.0017 22.6 4.0 19 87-105 72-90 (99)
191 PRK01203 prefoldin subunit alp 34.5 1.4E+02 0.003 22.2 5.4 36 78-113 7-42 (130)
192 KOG0161 Myosin class II heavy 34.5 5.9E+02 0.013 27.1 13.4 87 30-119 1453-1539(1930)
193 PRK09239 chorismate mutase; Pr 34.2 63 0.0014 22.8 3.5 21 77-97 9-29 (104)
194 TIGR00634 recN DNA repair prot 34.0 3.4E+02 0.0073 24.1 13.2 38 62-99 323-360 (563)
195 PF07888 CALCOCO1: Calcium bin 34.0 3.7E+02 0.0081 24.6 13.5 50 29-78 139-188 (546)
196 PRK03918 chromosome segregatio 33.8 3.8E+02 0.0082 24.6 15.8 35 82-116 304-338 (880)
197 PF09738 DUF2051: Double stran 33.7 2.7E+02 0.0059 23.3 7.7 48 73-123 100-147 (302)
198 PF14584 DUF4446: Protein of u 33.5 2.1E+02 0.0045 21.5 7.7 25 80-104 48-72 (151)
199 PF01540 Lipoprotein_7: Adhesi 33.5 3.1E+02 0.0066 23.4 14.4 90 32-121 191-296 (353)
200 TIGR03513 GldL_gliding gliding 33.3 2.5E+02 0.0055 22.4 8.4 16 63-78 181-196 (202)
201 PF10205 KLRAQ: Predicted coil 33.3 1.8E+02 0.004 20.8 10.5 65 52-119 3-67 (102)
202 PF15397 DUF4618: Domain of un 33.3 2.8E+02 0.006 22.9 10.2 78 38-121 11-89 (258)
203 PHA02414 hypothetical protein 33.2 1.9E+02 0.0041 21.0 6.6 84 15-109 5-88 (111)
204 PF10393 Matrilin_ccoil: Trime 33.0 76 0.0017 19.6 3.3 16 97-112 25-40 (47)
205 cd04789 HTH_Cfa Helix-Turn-Hel 33.0 97 0.0021 21.2 4.2 27 82-108 75-101 (102)
206 KOG0612 Rho-associated, coiled 32.7 4.8E+02 0.01 26.6 10.0 40 79-118 568-607 (1317)
207 PF11853 DUF3373: Protein of u 32.7 40 0.00086 30.3 2.7 22 85-106 31-52 (489)
208 KOG4559 Uncharacterized conser 32.5 2E+02 0.0043 21.0 6.5 62 51-112 48-116 (120)
209 PF00038 Filament: Intermediat 32.2 2.6E+02 0.0057 22.3 14.4 16 81-96 258-273 (312)
210 PF08580 KAR9: Yeast cortical 31.9 4.2E+02 0.0091 24.8 9.2 66 52-121 247-325 (683)
211 PF06013 WXG100: Proteins of 1 31.9 1.2E+02 0.0027 18.5 9.3 25 57-81 7-31 (86)
212 PF05622 HOOK: HOOK protein; 31.8 15 0.00034 33.5 0.0 59 55-113 268-326 (713)
213 KOG0995 Centromere-associated 31.7 4.2E+02 0.0091 24.5 9.7 26 23-48 201-226 (581)
214 PF02388 FemAB: FemAB family; 31.7 3.3E+02 0.0071 23.2 8.0 15 40-54 194-208 (406)
215 PF06009 Laminin_II: Laminin D 31.6 16 0.00034 26.7 0.0 21 83-103 50-70 (138)
216 PRK07737 fliD flagellar cappin 31.1 3.8E+02 0.0082 23.8 9.9 32 85-119 448-479 (501)
217 PHA03395 p10 fibrous body prot 31.1 1.7E+02 0.0038 20.4 5.1 45 65-112 8-52 (87)
218 PF01997 Translin: Translin fa 30.9 1.4E+02 0.003 22.9 5.2 24 81-104 172-195 (200)
219 PF10152 DUF2360: Predicted co 30.7 94 0.002 23.1 4.1 26 93-118 22-47 (148)
220 PF07889 DUF1664: Protein of u 30.3 2.2E+02 0.0049 20.9 11.0 26 94-119 98-123 (126)
221 PF05667 DUF812: Protein of un 30.2 4.4E+02 0.0095 24.2 10.7 40 82-121 444-483 (594)
222 PRK04654 sec-independent trans 30.2 3E+02 0.0064 22.3 9.5 29 58-86 69-97 (214)
223 cd01106 HTH_TipAL-Mta Helix-Tu 30.1 1.8E+02 0.0039 19.7 5.4 28 79-106 74-101 (103)
224 KOG3366 Mitochondrial F1F0-ATP 30.1 2.7E+02 0.0059 21.8 8.7 54 70-123 68-129 (172)
225 PRK13729 conjugal transfer pil 29.9 2.9E+02 0.0064 24.8 7.6 25 92-116 97-121 (475)
226 PRK05431 seryl-tRNA synthetase 29.8 3.2E+02 0.0068 23.7 7.7 53 53-105 41-93 (425)
227 PF08232 Striatin: Striatin fa 29.6 1.6E+02 0.0035 21.5 5.2 37 82-118 29-65 (134)
228 PF09340 NuA4: Histone acetylt 29.6 1.5E+02 0.0032 19.9 4.6 26 80-105 4-29 (80)
229 KOG3366 Mitochondrial F1F0-ATP 29.5 2.1E+02 0.0045 22.4 5.9 79 39-117 12-98 (172)
230 PRK13182 racA polar chromosome 29.4 2.6E+02 0.0057 21.5 7.6 23 82-104 122-144 (175)
231 PF13747 DUF4164: Domain of un 29.2 1.9E+02 0.0042 19.8 7.4 20 85-104 53-72 (89)
232 PF14662 CCDC155: Coiled-coil 29.0 3E+02 0.0065 21.9 12.5 48 66-113 41-88 (193)
233 COG1792 MreC Cell shape-determ 28.9 3.3E+02 0.0071 22.4 8.1 59 56-114 51-109 (284)
234 KOG4643 Uncharacterized coiled 28.6 6.1E+02 0.013 25.4 11.3 70 52-121 521-593 (1195)
235 PF11101 DUF2884: Protein of u 28.4 1.9E+02 0.0041 22.9 5.7 29 66-94 187-215 (229)
236 PRK10337 sensor protein QseC; 28.2 3.3E+02 0.0072 22.2 11.3 25 85-109 274-298 (449)
237 PF11803 UXS1_N: UDP-glucurona 28.1 1.3E+02 0.0028 20.7 4.0 40 54-95 35-74 (78)
238 TIGR00414 serS seryl-tRNA synt 28.1 3.4E+02 0.0073 23.4 7.6 51 55-105 45-96 (418)
239 cd04786 HTH_MerR-like_sg7 Heli 27.9 1.4E+02 0.0029 21.6 4.4 32 82-113 82-113 (131)
240 PRK12765 flagellar capping pro 27.9 4.7E+02 0.01 23.9 8.8 60 62-121 533-593 (595)
241 PRK10869 recombination and rep 27.8 4.5E+02 0.0097 23.6 13.0 6 73-78 311-316 (553)
242 PF03233 Cauli_AT: Aphid trans 27.8 2.9E+02 0.0063 21.4 7.7 40 78-117 111-160 (163)
243 PF07462 MSP1_C: Merozoite sur 27.6 5E+02 0.011 24.0 10.4 89 28-119 461-567 (574)
244 PHA03386 P10 fibrous body prot 27.3 2.3E+02 0.005 20.1 5.6 21 90-110 24-44 (94)
245 cd00193 t_SNARE Soluble NSF (N 27.0 1.4E+02 0.003 17.4 7.5 34 63-96 8-45 (60)
246 PF04091 Sec15: Exocyst comple 26.9 3.6E+02 0.0079 22.2 8.1 86 19-112 33-120 (311)
247 PF13887 MRF_C1: Myelin gene r 26.8 74 0.0016 18.9 2.3 21 100-120 15-35 (36)
248 KOG4117 Heat shock factor bind 26.8 2E+02 0.0044 19.3 6.5 47 58-104 13-60 (73)
249 KOG0994 Extracellular matrix g 26.6 6.8E+02 0.015 25.9 9.8 102 1-103 1648-1749(1758)
250 cd07666 BAR_SNX7 The Bin/Amphi 26.5 3.5E+02 0.0076 21.9 9.5 31 74-104 50-80 (243)
251 KOG4593 Mitotic checkpoint pro 26.4 5.7E+02 0.012 24.3 9.5 21 94-114 435-455 (716)
252 PRK10884 SH3 domain-containing 26.4 3.2E+02 0.007 21.5 8.2 57 65-121 90-147 (206)
253 PRK06664 fliD flagellar hook-a 26.4 4.2E+02 0.0091 24.6 8.2 16 47-62 550-565 (661)
254 PF10280 Med11: Mediator compl 26.4 2.1E+02 0.0046 20.3 5.1 29 82-110 3-32 (117)
255 TIGR00293 prefoldin, archaeal 26.2 2.3E+02 0.005 19.7 5.5 36 76-111 4-39 (126)
256 cd07664 BAR_SNX2 The Bin/Amphi 26.2 2.3E+02 0.005 22.7 5.8 33 80-112 24-56 (234)
257 PF11944 DUF3461: Protein of u 26.2 1.6E+02 0.0034 22.0 4.5 51 52-102 62-112 (125)
258 KOG3091 Nuclear pore complex, 26.1 3.1E+02 0.0067 25.0 7.0 53 65-119 335-387 (508)
259 PRK06034 hypothetical protein; 26.1 69 0.0015 26.7 2.9 20 78-97 9-28 (279)
260 TIGR02231 conserved hypothetic 26.0 4.5E+02 0.0097 23.0 11.3 87 27-119 86-172 (525)
261 PRK04863 mukB cell division pr 25.8 7.4E+02 0.016 25.5 14.3 39 51-89 304-342 (1486)
262 cd00890 Prefoldin Prefoldin is 25.7 2.3E+02 0.0049 19.4 6.0 31 78-108 13-43 (129)
263 PF05461 ApoL: Apolipoprotein 25.6 2.6E+02 0.0057 23.4 6.3 30 80-109 64-93 (313)
264 COG1722 XseB Exonuclease VII s 25.6 84 0.0018 21.4 2.8 9 91-99 34-42 (81)
265 PTZ00464 SNF-7-like protein; P 25.5 3.4E+02 0.0074 21.5 10.6 52 28-80 70-121 (211)
266 PRK14064 exodeoxyribonuclease 25.4 60 0.0013 21.7 2.0 23 90-112 29-51 (75)
267 PF00435 Spectrin: Spectrin re 25.4 1.8E+02 0.0038 18.1 8.6 26 55-80 42-67 (105)
268 TIGR01149 mtrG N5-methyltetrah 25.4 88 0.0019 21.1 2.7 17 79-95 13-29 (70)
269 PRK08724 fliD flagellar cappin 25.4 5.8E+02 0.012 24.0 10.9 18 16-33 576-593 (673)
270 PRK11199 tyrA bifunctional cho 25.3 76 0.0016 26.7 3.0 20 78-97 3-22 (374)
271 PRK09343 prefoldin subunit bet 25.3 2.6E+02 0.0056 20.0 6.9 44 79-122 72-115 (121)
272 PF08702 Fib_alpha: Fibrinogen 25.0 2.9E+02 0.0064 20.5 15.3 96 24-121 27-133 (146)
273 TIGR01837 PHA_granule_1 poly(h 24.9 2.6E+02 0.0057 19.9 5.6 16 86-101 97-112 (118)
274 smart00721 BAR BAR domain. 24.9 3E+02 0.0065 20.6 13.2 100 12-112 35-158 (239)
275 PF09730 BicD: Microtubule-ass 24.9 6E+02 0.013 24.1 10.2 57 43-99 355-412 (717)
276 TIGR01554 major_cap_HK97 phage 24.8 4.1E+02 0.0088 22.1 9.1 10 89-98 38-47 (378)
277 PRK14067 exodeoxyribonuclease 24.6 65 0.0014 21.9 2.1 23 90-112 30-52 (80)
278 KOG0810 SNARE protein Syntaxin 24.5 1.7E+02 0.0037 24.5 4.9 29 80-108 35-63 (297)
279 smart00338 BRLZ basic region l 24.4 1.9E+02 0.004 18.0 5.6 9 49-57 13-21 (65)
280 PRK01026 tetrahydromethanopter 24.3 92 0.002 21.4 2.7 17 79-95 16-32 (77)
281 PF03670 UPF0184: Uncharacteri 24.3 2.5E+02 0.0054 19.4 6.2 32 86-117 41-72 (83)
282 PF06667 PspB: Phage shock pro 24.2 1.2E+02 0.0026 20.5 3.3 43 53-101 23-65 (75)
283 PF11083 Streptin-Immun: Lanti 24.0 1.7E+02 0.0036 21.0 4.1 24 89-112 67-90 (99)
284 cd08317 Death_ank Death domain 24.0 2.1E+02 0.0045 18.8 4.5 52 56-110 4-57 (84)
285 COG1196 Smc Chromosome segrega 23.9 6.9E+02 0.015 24.4 12.9 91 31-121 812-906 (1163)
286 COG3416 Uncharacterized protei 23.9 1.8E+02 0.004 23.7 4.8 30 92-121 48-77 (233)
287 PRK13922 rod shape-determining 23.8 3.7E+02 0.0081 21.3 7.6 40 73-112 71-110 (276)
288 PRK15041 methyl-accepting chem 23.7 5E+02 0.011 22.8 16.6 24 10-33 400-423 (554)
289 cd04776 HTH_GnyR Helix-Turn-He 23.3 2.7E+02 0.0059 19.5 7.2 31 86-116 81-111 (118)
290 cd07629 BAR_Atg20p The Bin/Amp 23.1 3.5E+02 0.0075 20.7 8.3 33 44-76 23-55 (187)
291 PF05565 Sipho_Gp157: Siphovir 22.9 3.3E+02 0.0071 20.3 9.6 41 79-119 41-81 (162)
292 PF01627 Hpt: Hpt domain; Int 22.9 2E+02 0.0043 17.8 5.3 20 88-107 71-90 (90)
293 PRK04778 septation ring format 22.9 5.5E+02 0.012 22.9 15.4 49 30-78 307-365 (569)
294 PF00957 Synaptobrevin: Synapt 22.8 2.3E+02 0.005 18.6 8.9 29 86-114 32-60 (89)
295 PRK06664 fliD flagellar hook-a 22.7 5.1E+02 0.011 24.0 8.1 18 95-112 635-652 (661)
296 PF07200 Mod_r: Modifier of ru 22.7 3E+02 0.0064 19.8 13.3 103 12-115 5-119 (150)
297 PRK11415 hypothetical protein; 22.6 1.9E+02 0.0041 19.1 4.0 33 68-100 7-39 (74)
298 PF05929 Phage_GPO: Phage caps 22.5 4.5E+02 0.0099 21.8 8.3 23 53-75 191-213 (276)
299 TIGR02677 conserved hypothetic 22.5 5.6E+02 0.012 22.9 11.4 28 94-121 190-217 (494)
300 PF12269 zf-CpG_bind_C: CpG bi 22.5 2.9E+02 0.0063 22.5 5.8 38 84-121 28-65 (236)
301 PF11593 Med3: Mediator comple 22.5 1.5E+02 0.0032 26.0 4.3 49 45-93 55-104 (379)
302 PF10152 DUF2360: Predicted co 22.4 2.8E+02 0.006 20.6 5.3 40 65-104 7-47 (148)
303 PRK14063 exodeoxyribonuclease 22.4 77 0.0017 21.2 2.1 23 90-112 28-50 (76)
304 TIGR01612 235kDa-fam reticuloc 22.4 9.9E+02 0.021 26.5 10.4 90 20-112 2303-2394(2757)
305 KOG3335 Predicted coiled-coil 22.4 1.6E+02 0.0034 23.3 4.1 44 79-122 107-150 (181)
306 PF11488 Lge1: Transcriptional 22.2 2.5E+02 0.0053 18.6 6.8 47 70-116 22-68 (80)
307 cd04783 HTH_MerR1 Helix-Turn-H 22.2 1.7E+02 0.0037 20.6 4.0 29 84-112 83-111 (126)
308 PRK12595 bifunctional 3-deoxy- 22.1 95 0.0021 26.4 3.0 20 78-97 4-23 (360)
309 PF00015 MCPsignal: Methyl-acc 22.1 3.2E+02 0.0069 19.9 15.9 40 78-117 156-195 (213)
310 COG3937 Uncharacterized conser 22.0 3E+02 0.0066 20.0 5.2 20 80-99 85-104 (108)
311 PF11460 DUF3007: Protein of u 21.9 1.7E+02 0.0037 21.1 3.9 17 83-99 64-80 (104)
312 PRK01156 chromosome segregatio 21.9 6.6E+02 0.014 23.4 14.3 99 14-112 639-746 (895)
313 PHA03046 Hypothetical protein; 21.7 1.9E+02 0.0042 21.9 4.3 38 86-123 85-122 (142)
314 cd00584 Prefoldin_alpha Prefol 21.4 3E+02 0.0064 19.2 6.4 39 80-118 89-127 (129)
315 COG0840 Tar Methyl-accepting c 21.3 4.5E+02 0.0097 21.3 16.8 18 15-32 282-299 (408)
316 cd04775 HTH_Cfa-like Helix-Tur 21.3 2.1E+02 0.0045 19.5 4.1 26 82-107 75-100 (102)
317 PF02996 Prefoldin: Prefoldin 21.2 2.8E+02 0.006 18.9 5.9 41 81-121 80-120 (120)
318 cd01107 HTH_BmrR Helix-Turn-He 21.2 2.8E+02 0.0061 19.0 5.7 26 83-108 80-105 (108)
319 KOG4515 Uncharacterized conser 21.1 4.5E+02 0.0097 21.2 8.5 54 55-108 121-178 (217)
320 TIGR02047 CadR-PbrR Cd(II)/Pb( 21.0 2.4E+02 0.0052 20.0 4.6 27 83-109 84-110 (127)
321 PF10168 Nup88: Nuclear pore c 20.7 7.1E+02 0.015 23.4 12.0 66 38-106 534-600 (717)
322 PRK13729 conjugal transfer pil 20.6 6.3E+02 0.014 22.8 8.6 20 55-74 70-89 (475)
323 PF02601 Exonuc_VII_L: Exonucl 20.6 4.6E+02 0.01 21.2 13.0 69 27-95 137-208 (319)
324 PRK08032 fliD flagellar cappin 20.6 5.7E+02 0.012 22.3 11.2 51 64-114 409-460 (462)
325 PF06840 DUF1241: Protein of u 20.5 4E+02 0.0086 20.4 6.8 53 53-105 88-140 (154)
326 PRK15039 transcriptional repre 20.5 1.9E+02 0.0041 20.0 3.8 26 83-109 11-36 (90)
327 PRK14068 exodeoxyribonuclease 20.5 87 0.0019 21.1 2.0 23 90-112 29-51 (76)
328 PF14591 AF0941-like: AF0941-l 20.4 2.2E+02 0.0048 21.3 4.3 30 91-120 64-93 (127)
329 KOG0933 Structural maintenance 20.3 8.9E+02 0.019 24.4 15.0 86 30-119 688-775 (1174)
330 PRK14066 exodeoxyribonuclease 20.3 88 0.0019 21.0 2.0 29 90-118 27-58 (75)
331 cd04770 HTH_HMRTR Helix-Turn-H 20.3 3.1E+02 0.0066 19.0 7.1 29 81-109 82-110 (123)
332 PF03245 Phage_lysis: Bacterio 20.2 3.4E+02 0.0074 19.5 6.7 15 99-113 31-46 (125)
333 COG3165 Uncharacterized protei 20.2 4.6E+02 0.01 21.0 9.2 86 30-115 97-202 (204)
334 PRK10622 pheA bifunctional cho 20.2 1.1E+02 0.0024 26.3 3.0 20 78-97 5-24 (386)
335 COG3879 Uncharacterized protei 20.1 5E+02 0.011 21.4 8.7 29 44-72 54-82 (247)
336 PF04912 Dynamitin: Dynamitin 20.1 5.4E+02 0.012 21.7 13.5 56 61-116 312-367 (388)
No 1
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=100.00 E-value=8e-37 Score=215.28 Aligned_cols=99 Identities=43% Similarity=0.625 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 033198 20 LNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 20 ~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~ 99 (125)
|++||++++.||+||+++|.+||+|||+||++++.||.+|+++++++++++++|+++|++|+||+++||+||++|++||+
T Consensus 1 ~~~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 1 AERMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033198 100 VISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 100 ~a~~LD~ysk~LE~K~k~l 118 (125)
+|++||+||++||+|||++
T Consensus 81 ~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 81 TVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975
No 2
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=8.2e-28 Score=172.07 Aligned_cols=94 Identities=27% Similarity=0.428 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV 94 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V 94 (125)
.|++|+..||.|+..|+++||++..+||+|||.||++++.||.+|+++|..+...+..|++||+.|.||++|||.|++++
T Consensus 26 hirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst 105 (120)
T KOG4559|consen 26 HIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDST 105 (120)
T ss_pred cHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033198 95 TQFEAVISMLDKYV 108 (125)
Q Consensus 95 ~~LE~~a~~LD~ys 108 (125)
++||+++++||.|+
T Consensus 106 ~kLEaAa~~Ld~Y~ 119 (120)
T KOG4559|consen 106 DKLEAAAAKLDAYS 119 (120)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999997
No 3
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=95.25 E-value=0.96 Score=34.33 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 033198 14 DELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ 93 (125)
Q Consensus 14 d~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~ 93 (125)
..++.....++.++..-+.+=...|.+.++....-...+-.--..--...-.+=..+++|++....+...-+||.+|...
T Consensus 62 ~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~ 141 (149)
T PF10157_consen 62 QAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKL 141 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888777777777766665554444332222233334466777777777777888888888888
Q ss_pred HHHHHHH
Q 033198 94 VTQFEAV 100 (125)
Q Consensus 94 V~~LE~~ 100 (125)
|+.||.+
T Consensus 142 lD~lE~~ 148 (149)
T PF10157_consen 142 LDLLESL 148 (149)
T ss_pred HHHHHhc
Confidence 8888764
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.87 E-value=6.2 Score=30.47 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhhhhhHH----HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh------------------
Q 033198 23 LFTSVSAMVKSELQGTNNTL----ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF------------------ 80 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~----~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l------------------ 80 (125)
+|+.+..+|.|.++...+.+ .+|+..=+-+...+.+.+..+..+...-..++.++...
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555555555555444433 44444444444444444444444444444444443332
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 81 ------------DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 81 ------------~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..|-.++..++.++..++..+..|..-...|+.|+..+.+
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444445555555555555555555566666665554
No 5
>PRK10698 phage shock protein PspA; Provisional
Probab=90.35 E-value=7.7 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
|-.+|..++.++...+..+..|-.-..+|+.|+..+...
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888999888877654
No 6
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.77 E-value=15 Score=35.29 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=66.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 32 KSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEY----VQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 32 ~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~y----l~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
+++++.+..-++=+++++...-.+|.+++..-..++..=.+|-.||.....- -+-||+.++....|...+-+++.-
T Consensus 402 r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 402 RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666788899999999999999999999999988888888875443 456778888888888877777777
Q ss_pred HHHHHHHHHh
Q 033198 108 VAVLESKMQS 117 (125)
Q Consensus 108 sk~LE~K~k~ 117 (125)
..++|.|...
T Consensus 482 ~~~~~~K~e~ 491 (980)
T KOG0980|consen 482 AGRAETKTES 491 (980)
T ss_pred HHHHHHhhHH
Confidence 7776666543
No 7
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=86.50 E-value=7.7 Score=26.02 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=34.3
Q ss_pred hHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198 49 NLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 49 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE 98 (125)
......==.+..+.......-.++.+.|-+.++|.++.+.++.+.|..|.
T Consensus 39 ~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 39 QEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33333333555666666667777777888888888888888888877764
No 8
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=85.92 E-value=12 Score=27.66 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=65.5
Q ss_pred HHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 033198 29 AMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ---VTQFEAVISMLD 105 (125)
Q Consensus 29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~---V~~LE~~a~~LD 105 (125)
.=|.+++..-..+|+-|+++ -..+|...+..+..+...+..+...|.+...-+..|-+..+- =.+.-.++.+-+
T Consensus 23 ~~v~~~l~~LEae~q~L~~k---E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~ 99 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQK---EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYK 99 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55677788888888877665 567899999999999999999999999888777777655332 145556666777
Q ss_pred HHHHHHHHHHHhhhh
Q 033198 106 KYVAVLESKMQSLYQ 120 (125)
Q Consensus 106 ~ysk~LE~K~k~l~~ 120 (125)
.+-+.|+.+++.-++
T Consensus 100 ~~~~~L~k~I~~~e~ 114 (126)
T PF09403_consen 100 DLLNKLDKEIAEQEQ 114 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766665443
No 9
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=85.04 E-value=3.6 Score=26.30 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 61 DVAAGLRVFVEQLKKKSGSF-DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l-~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+.+.-+..-+++++.|+..+ ...+.+||+...+|..||..+..|
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445566677777777774 456788999999999998887665
No 10
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=84.65 E-value=5.1 Score=27.48 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 23 LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
||.++-..+. ..+.+.++.++|=+|-+..-.-|.-++.-.-++-..+. +.-.-+|+++|++|-+.++
T Consensus 1 MFEkid~I~k-~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~------------~~~~~QideeV~~LKe~Id 67 (79)
T PF10398_consen 1 MFEKIDLILK-NIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLN------------MAFLAQIDEEVEKLKEHID 67 (79)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-------------HHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCccccc------------HHHHHHHHHHHHHHHHHHH
Confidence 6777776664 57888999999999999999999988876655543332 1224467789999999999
Q ss_pred HHHHHHHHH
Q 033198 103 MLDKYVAVL 111 (125)
Q Consensus 103 ~LD~ysk~L 111 (125)
.|..|-+++
T Consensus 68 aLNK~KkE~ 76 (79)
T PF10398_consen 68 ALNKIKKEL 76 (79)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999887653
No 11
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.37 E-value=20 Score=28.89 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=46.7
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 50 LRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 50 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
......-..+.+...-|....+..+.+-.+-..++..|.+|...+..||.++.....=-.+....+..++
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555666666777788999999999999999999887766666655555444
No 12
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=83.38 E-value=12 Score=27.06 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198 69 FVEQLKKKSGSFDEYVQQIDSIEQQV 94 (125)
Q Consensus 69 ~~~~Ln~ky~~l~~yl~qID~Ie~~V 94 (125)
.+.+|+++|..|..++..+-+|..+|
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888
No 13
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=83.02 E-value=13 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..|.+-+.+|+.+++.+.+.|.....--.|..+||.+.+.+.+
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466888899999999999999999999999999988887765
No 14
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=81.76 E-value=14 Score=33.04 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=62.0
Q ss_pred hHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 49 NLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID----SIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 49 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID----~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
-..+..+...+...-+.+..+++.=-|-.++|+.|..|+. .+..+|..-|.-++.|-+-|-.||.|++-||+|-
T Consensus 134 t~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qL 211 (558)
T PF15358_consen 134 TSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQL 211 (558)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHh
Confidence 3445567777778888888888888888889999988875 4788888999999999999999999999999874
No 15
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.64 E-value=7.6 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
..+|.+++.++.||..-..+|.-.+.+..+++++
T Consensus 13 ~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 13 TKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555444
No 16
>PRK11637 AmiB activator; Provisional
Probab=81.56 E-value=32 Score=29.30 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
++.++.+....++.+.+|..-.++|+..++++.
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666554
No 17
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.47 E-value=24 Score=29.88 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 033198 97 FEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 97 LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|.+-...+..|.+.||.|+..|+
T Consensus 366 ~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 366 FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 55556667777788888777663
No 18
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=80.40 E-value=7.1 Score=33.24 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Q 033198 85 QQIDSIEQQVTQFEAV-------ISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~-------a~~LD~ysk~LE~K~k~l~~~ 121 (125)
..|+++|+.|+.||.- +..+....+.|+.++..+++.
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555544 444555555566666665543
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=80.04 E-value=11 Score=29.77 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 033198 43 ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 43 ~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~LE~~a~~LD~ 106 (125)
+.|++||--+..--..+...+.+|+..+..+...+..+-.++. |=-.....|++||+=+..||.
T Consensus 61 kYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~ 128 (189)
T TIGR02132 61 NYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK 128 (189)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence 3567777766666677778888888888888777666555555 555666677777766655543
No 20
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.98 E-value=18 Score=31.00 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=60.6
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
|.-++++-.++.++|++||+--.....++.+.+..|+..+-.--.--+..+.|-.||-.+-+.-..||-=..
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999988888887777667778889999999988888888875433
No 21
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.76 E-value=31 Score=26.92 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
..|-.++..++.++..+...|..|..-...|+.++..+...
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888887766543
No 22
>PRK14011 prefoldin subunit alpha; Provisional
Probab=75.86 E-value=15 Score=27.60 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=37.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 71 EQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 71 ~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+.|+++...|+.|-+||..+..++..|..+..+++.-...|+
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999999988888777
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.51 E-value=38 Score=26.73 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=34.5
Q ss_pred HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 30 yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.+.++|..+-.-...++.-....-.....+.....++........++- ..|=.+|..+..++...|.-+.....-+.
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re---~~~e~~i~~L~~~lkeaE~Rae~aE~~v~ 200 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE---DEYEEKIRDLEEKLKEAENRAEFAERRVK 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444444444444444444443333222 23333333333333333333333333333
Q ss_pred HHHHH
Q 033198 110 VLESK 114 (125)
Q Consensus 110 ~LE~K 114 (125)
.||..
T Consensus 201 ~Le~~ 205 (237)
T PF00261_consen 201 KLEKE 205 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 24
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=75.35 E-value=33 Score=25.96 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhhhhhhHH-HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 25 TSVSAMVKSELQGTNNTL-ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 25 ~~vs~yl~~El~~t~~d~-~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~ 103 (125)
.++-+-|+++++++.-+- .||.+-|+ -.+++|.|-+.++|-+.-+-++-++|..|=+.+..
T Consensus 37 akt~~~l~~qv~gi~~eT~~Ll~K~N~------------------L~eDvq~Kv~tld~vf~aV~dl~~SV~~ln~s~r~ 98 (139)
T COG4768 37 AKTLKGLTSQVDGITHETEELLHKTNT------------------LAEDVQGKVATLDPVFDAVKDLGQSVSDLNQSVRH 98 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777765544 45666665 46788999999999999999999999998888776
Q ss_pred HHH
Q 033198 104 LDK 106 (125)
Q Consensus 104 LD~ 106 (125)
+-.
T Consensus 99 ~~~ 101 (139)
T COG4768 99 LAT 101 (139)
T ss_pred HHH
Confidence 643
No 25
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=74.42 E-value=12 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033198 60 GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 117 (125)
.-.+.++......|+.|....+.++..+.+|+.+|..-|+-+..|.......-.-+..
T Consensus 20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 20 PLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888999999999999999999999999999888888877665544443
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.16 E-value=66 Score=29.07 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKS------GSFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky------~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
...+.++.+....+...+..++.+. +.+..+...+..++..+.+++.-...+..
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~ 449 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLR 449 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555533 23344444444444444444444333333
No 27
>PRK10807 paraquat-inducible protein B; Provisional
Probab=73.59 E-value=59 Score=29.24 Aligned_cols=108 Identities=9% Similarity=0.219 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhhhhhhHH-HHHHHHhHHHHH-----HHhhHHHHHHhHHHHHHHHHHHHhhhHHH
Q 033198 14 DELAESLNDLFTSVSAM----VKSELQGTNNTL-ELLEKMNLRVAE-----EYKGFGDVAAGLRVFVEQLKKKSGSFDEY 83 (125)
Q Consensus 14 d~L~~l~~~~f~~vs~y----l~~El~~t~~d~-~LLe~mN~~~s~-----kY~~m~~~a~~l~~~~~~Ln~ky~~l~~y 83 (125)
++|.+.++.++.++.+. +-++++.+..+. .++.+++..... -=..+.....+++..+..++.....++|-
T Consensus 416 ~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~ 495 (547)
T PRK10807 416 AQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPG 495 (547)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 56777777777776665 222344444433 244445444311 11334455577778888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
.....++.+.+.+|.+++..|..-+..|+.+=.+|=+.
T Consensus 496 s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P~aLi~g 533 (547)
T PRK10807 496 SPAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFE 533 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcC
Confidence 77788888889999999999999988888766555433
No 28
>PRK11637 AmiB activator; Provisional
Probab=73.55 E-value=57 Score=27.83 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCC
Q 033198 103 MLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 103 ~LD~ysk~LE~K~k~l~~~~~ 123 (125)
.|+..-+.|..+++.+|+.+.
T Consensus 118 ~l~~~~~~l~~rlra~Y~~g~ 138 (428)
T PRK11637 118 QQAAQERLLAAQLDAAFRQGE 138 (428)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 344445556666666666443
No 29
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=73.42 E-value=25 Score=23.71 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=49.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 57 KGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 57 ~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..+..+..++...+.+++-.|.+|+.-+++||.-- ....=+.++..|+.-.++||.|=..++.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~-~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSL-GRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888887788877744 4456678888999999999998777664
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.16 E-value=44 Score=26.37 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=32.3
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 033198 35 LQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYV 84 (125)
Q Consensus 35 l~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl 84 (125)
+..+---++-|++-+.....+...+..-...+...+.+...+|.+...-+
T Consensus 73 ~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl 122 (237)
T PF00261_consen 73 ADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL 122 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456667776777777777777777777777777777776654444
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.91 E-value=51 Score=26.12 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
..+|..+..-..++.....+++.. +..--+.|+.++.++..++.+-..|.-..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~---v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQ---VASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444422 22333455556666666665444444433
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.51 E-value=70 Score=27.63 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
+......+..++..|..||..+..+..=-++|+.+++++
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 333444444555555555555444444444444444443
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.36 E-value=22 Score=23.21 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
-|+++.+-|..-..-+..|-.-.+.|..|++++.
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445566666666666666666666666665
No 34
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=70.25 E-value=13 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
|..|++.+..++.-+..|..-...||.+.
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444444443
No 35
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=68.72 E-value=59 Score=26.00 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Q 033198 21 NDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 21 ~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~ 99 (125)
..++...+.+++. +++.. +-|..||. +...=.+..+....+.+.++.||.-|+- ++.--+|+..+++-+..-+.
T Consensus 102 ~~l~esl~~~i~~-~~~aa---~~i~~~~~-~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~ 176 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAA---KTLAPMTD-SYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSS 176 (202)
T ss_pred HHHHHHHHHHHHH-HHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777765 33332 23555555 3333447777888888999999988876 55444455555544444444
Q ss_pred HHHHHHHHHHHHH
Q 033198 100 VISMLDKYVAVLE 112 (125)
Q Consensus 100 ~a~~LD~ysk~LE 112 (125)
.=.++..-++.|+
T Consensus 177 fkeQ~~kLa~NL~ 189 (202)
T TIGR03513 177 LKEEMEKMAANLT 189 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.71 E-value=29 Score=22.55 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
..+.|..++..+..++.-+..|+.-...+|.+++++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~ 40 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666655544
No 37
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=68.49 E-value=83 Score=27.67 Aligned_cols=101 Identities=13% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh-hhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHHH
Q 033198 15 ELAESLNDLFTSVSAMVKSELQGT-NNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSG--SFDEYVQQIDSIE 91 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~El~~t-~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--~l~~yl~qID~Ie 91 (125)
+....+..++.++..+-.+-++++ ...--.++..+..-+.....+-..+.+|...+++|..--. ..+|-..++..+-
T Consensus 173 ~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~ 252 (424)
T PF03915_consen 173 EVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVA 252 (424)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 344556666667666655444443 3445556666666555555555555555555555554322 3677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 92 QQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 92 ~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
..+..+...+..|-.|.+.+---+
T Consensus 253 kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 253 KDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHH
Confidence 777777777777776655544333
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.23 E-value=71 Score=26.76 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=42.7
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHH---------------HHHHHhhhHHHHHHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQ---------------LKKKSGSFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~---------------Ln~ky~~l~~yl~qID~Ie~~V~ 95 (125)
|+.+-..-..+..++..+=-....+|..+...+..+...... |.....++.+..+.|.+.+.++.
T Consensus 156 l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555444444333322 23333444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 96 QFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 96 ~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.++..+...-.=..++...+.++++
T Consensus 236 ~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 236 ELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444444443
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.01 E-value=93 Score=28.02 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 033198 25 TSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ 93 (125)
Q Consensus 25 ~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~ 93 (125)
+.++.|.+++++.-..-|.++-.--+.....-.++...-..+++.+.+++.|.+.++.-++-+.++++.
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888877766666566667777777777777777777777766666655554443
No 40
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=67.94 E-value=55 Score=25.72 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.+=.+|+.|++++..+|. +|+.+..+|..+|-+|+.
T Consensus 197 ~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~ 232 (239)
T PF07195_consen 197 SLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMES 232 (239)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344555566665555554 566777777777777654
No 41
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=67.15 E-value=46 Score=24.15 Aligned_cols=70 Identities=14% Similarity=0.362 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 46 EKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 46 e~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
..+|..++.=|..-+.+-.............+..-..++.-++.+...+-+| .-++.|.+.+|..++.+.
T Consensus 36 d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi----GDveNWa~~iE~Dl~~i~ 105 (121)
T PF06320_consen 36 DHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI----GDVENWAEMIERDLRVIE 105 (121)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHH
Confidence 3456666666655544443333222222222333344444555555555443 455677777777776654
No 42
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=66.42 E-value=23 Score=24.39 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+|+-|+..+.+-..=+..++...|.||.+.+.+++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777665
No 43
>PHA03395 p10 fibrous body protein; Provisional
Probab=66.17 E-value=22 Score=24.88 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~L 97 (125)
...|...+.....+++.++-++.+..+.|...-.+++.|...|+.+
T Consensus 16 vd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I 61 (87)
T PHA03395 16 VSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNI 61 (87)
T ss_pred HhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444445555444444444444444444444444444443
No 44
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=65.92 E-value=21 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=38.1
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 033198 51 RVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 51 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~ 95 (125)
.+=.+|..|.+....|...+.+|+.........++.+.++|.++.
T Consensus 7 ~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~g 51 (78)
T PF08656_consen 7 EVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIG 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 445689999999999999999997777777888999999998875
No 45
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.21 E-value=67 Score=25.05 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhc
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYV-AVLESKMQSLYQH 121 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ys-k~LE~K~k~l~~~ 121 (125)
.-+..++.|++.|..+|.-+...+.++ .-|+.+|..++..
T Consensus 163 ~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~~ 203 (219)
T TIGR02977 163 EAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEAD 203 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcCC
Confidence 344567788999999998887776442 3488888888743
No 46
>PRK00736 hypothetical protein; Provisional
Probab=64.05 E-value=31 Score=22.54 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhh
Q 033198 107 YVAVLESKMQSL 118 (125)
Q Consensus 107 ysk~LE~K~k~l 118 (125)
-.+.|-.|++.+
T Consensus 41 ql~~L~~rl~~~ 52 (68)
T PRK00736 41 KLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHh
Confidence 333333344433
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.03 E-value=1.5e+02 Score=29.15 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=37.2
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
|++++......+.-|.+=+......+..+.+-...|......+..+-..+..-+++..+++.++.+|..-...+..=.+.
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444555555555555544444444444444444444444444444444444433333333
Q ss_pred H
Q 033198 111 L 111 (125)
Q Consensus 111 L 111 (125)
+
T Consensus 907 ~ 907 (1311)
T TIGR00606 907 A 907 (1311)
T ss_pred H
Confidence 3
No 48
>PRK04325 hypothetical protein; Provisional
Probab=63.70 E-value=31 Score=22.92 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
|++-...+..|-.-.+.|-.|++.+
T Consensus 32 v~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 32 VARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333444444443
No 49
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=22 Score=26.18 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 97 FEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 97 LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
-+.++..|+.-.-.||.|++.++++
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQ 92 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777665
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=63.05 E-value=1.2e+02 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
++..++.++..++.-+..+..-...|+.++
T Consensus 246 ~~~~l~~~~~~l~~~i~~l~~el~~l~~~l 275 (880)
T PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEI 275 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333333333333
No 51
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=62.77 E-value=32 Score=25.45 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHH--HHHHHHHHHh
Q 033198 61 DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS--------MLDKY--VAVLESKMQS 117 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~--------~LD~y--sk~LE~K~k~ 117 (125)
++...|+.-++.+...-.-+...+.+++.-+...+.||.++. ++|.. +++|+.-+++
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 344444444444444444444445555555544566666554 45655 6777776665
No 52
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.41 E-value=35 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 88 DSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+++.+-|+.--..+..|-.-.+.|-.+++.+.
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333344444444444444444444444443
No 53
>PRK00295 hypothetical protein; Provisional
Probab=61.95 E-value=37 Score=22.23 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 88 DSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+++.+-|..--..+..|-.-.+.|-.+++.+.
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444555443
No 54
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.66 E-value=86 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 033198 44 LLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI 87 (125)
Q Consensus 44 LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI 87 (125)
++..++......+..+.+...++..+...|+.+...+...++++
T Consensus 163 ~l~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l 206 (359)
T COG1463 163 ILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANL 206 (359)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45666677777777777777777777777777776655554443
No 55
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.26 E-value=70 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
.+-+.+..+|..|.+-+..||.-++.+=.++...+
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466667777777777777776666666555544
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.11 E-value=67 Score=23.98 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 75 ~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
....++....+.+.+....+..+...+..+..-...|+.++.+.+.
T Consensus 141 ~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 141 ELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343334677777788888888888887777777777766553
No 57
>PRK10698 phage shock protein PspA; Provisional
Probab=60.84 E-value=82 Score=24.92 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhc
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYV-AVLESKMQSLYQH 121 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ys-k~LE~K~k~l~~~ 121 (125)
.+-+..++.+|..|..+|.-+...+... +.|+.+|..|+..
T Consensus 162 ~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~ 203 (222)
T PRK10698 162 DEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKAD 203 (222)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhcc
Confidence 3556778889999999999887765432 3488888888653
No 58
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=59.98 E-value=67 Score=23.62 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
++++++++..||-=+..|..--+.|+.+|++|+
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.77 E-value=69 Score=23.72 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 27 VSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK----KKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 27 vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln----~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
=..-++.++..+...+.-....-......-.. +.++.+.+..|. .-...|.+-..++.+++.....+|--|.
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456666666666665544433333222222 224444444443 3344567777788888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 033198 103 MLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 103 ~LD~ysk~LE~K~k~l~~~ 121 (125)
.|+.-.-.+|.|+..+..+
T Consensus 119 ~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 119 ALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888777643
No 60
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=59.67 E-value=88 Score=24.88 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=23.4
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 54 EEYKGFGDVAAGLRVFVEQLKKKSGSFDEYV-QQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 54 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl-~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
.||..++. +......+..+-..++.-+ ++.+.-+.++..+.+-...++--.+.|
T Consensus 72 ~KY~~LK~----~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el 126 (196)
T PF15272_consen 72 SKYQELKK----SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKEL 126 (196)
T ss_pred HHHHHHHH----HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655 2233333333333433333 444444555555544444444333333
No 61
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.66 E-value=54 Score=24.72 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=33.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 71 EQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 71 ~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
.+|.++.+.++-|-.+|..+..++..|+.+...++.--.-|+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778888888888888888888888888887766663
No 62
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=58.58 E-value=53 Score=21.98 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHhhHHHHHHhHHHHHHHHH
Q 033198 44 LLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74 (125)
Q Consensus 44 LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln 74 (125)
.|.+|+-++...|.-.+.++..++..+..|+
T Consensus 40 ~l~kldlVtREEFd~q~~~L~~~r~kl~~LE 70 (79)
T PF04380_consen 40 ALSKLDLVTREEFDAQKAVLARTREKLEALE 70 (79)
T ss_pred HHHHCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777666665555444443333
No 63
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=58.52 E-value=56 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhhh
Q 033198 66 LRVFVEQLKKKSGSF 80 (125)
Q Consensus 66 l~~~~~~Ln~ky~~l 80 (125)
|+..++.+.+|-..+
T Consensus 9 Ir~dIk~vd~KVdaL 23 (75)
T PF05531_consen 9 IRQDIKAVDDKVDAL 23 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=58.18 E-value=1.2e+02 Score=27.02 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=29.5
Q ss_pred hhhhhhhHHH-HHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 033198 34 ELQGTNNTLE-LLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIE 91 (125)
Q Consensus 34 El~~t~~d~~-LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie 91 (125)
++.....++. +.+.+|..... |..+.+....+...++.++....++...++.+-..|
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~-ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIA-YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 44444444444 666666666666666666655555555555444333
No 65
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=57.40 E-value=1.2e+02 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
.|-.+|+.|++++..|+. +|+.+-.+|..+|-+|+
T Consensus 410 ~l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame 444 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLD 444 (462)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455566666666666664 55556666666666655
No 66
>PHA02675 ORF104 fusion protein; Provisional
Probab=57.29 E-value=19 Score=25.24 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
.|+..+..|++.-..+-..++.+...++.|+|+.
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ 67 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHL 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666667777777777777654
No 67
>PRK04406 hypothetical protein; Provisional
Probab=57.20 E-value=47 Score=22.21 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 033198 103 MLDKYVAVLESKMQSL 118 (125)
Q Consensus 103 ~LD~ysk~LE~K~k~l 118 (125)
.|-.-.+.|-.+++.+
T Consensus 43 ~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 43 KMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333344443
No 68
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=56.91 E-value=98 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 93 QVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 93 ~V~~LE~~a~~LD~ysk~LE~ 113 (125)
-+..|..++..|..|+..|+.
T Consensus 260 ~l~~l~~~~~~l~~~~~~l~~ 280 (291)
T TIGR00996 260 ALANLAPVLTLLVDYHPELEQ 280 (291)
T ss_pred HHHHHHHHHHHHHhcchhHHH
Confidence 333444444444444444443
No 69
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=56.85 E-value=61 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+..++++.+..++..||.-...|..+...|+
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~ 108 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTD 108 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555553
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.53 E-value=2.1e+02 Score=28.32 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHH
Q 033198 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI-DSIEQQ 93 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI-D~Ie~~ 93 (125)
++..+.+..-....+|+=+.+..-..+|+.++..+.-.-.+-..+.+.+.........+.+++.+++.-++.+ |..+.+
T Consensus 256 ~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 256 QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 4555566666667788888888888999999999988888888899888888888888888888888777654 667777
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 033198 94 VTQFEAVISMLDKYVA---VLESKMQSLY 119 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk---~LE~K~k~l~ 119 (125)
=.+++.+...||.+-+ .++.+++..+
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888876 4445544443
No 71
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.49 E-value=57 Score=21.70 Aligned_cols=58 Identities=9% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 46 EKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 46 e~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~ 103 (125)
..+|.....-=.++..+...+..-+...|..-+..+..++.+|.+=+.|..+...+..
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444444444444444444444433
No 72
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=56.43 E-value=1.7e+02 Score=27.08 Aligned_cols=92 Identities=18% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-
Q 033198 17 AESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVT- 95 (125)
Q Consensus 17 ~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~- 95 (125)
.+-++.++..+|+-++.-|..+...-+.|+..|+ +|..-.+.+.+..+.+..|+.+.+..+|---.||+-+..|+
T Consensus 115 ~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~----~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~ 190 (593)
T PRK15374 115 IESQKEMGIQVSKEFQTALGEAQEATDLYEASIK----KTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQ 190 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Confidence 3445667788888888888888888888888765 67888889999999999999999999888888877766654
Q ss_pred ---HHHHHHHHHHHHHHHHH
Q 033198 96 ---QFEAVISMLDKYVAVLE 112 (125)
Q Consensus 96 ---~LE~~a~~LD~ysk~LE 112 (125)
.+..+-...|.|+..-+
T Consensus 191 a~~~a~~a~~~~~~~v~a~~ 210 (593)
T PRK15374 191 AGKEATEAKEALDKATDATV 210 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666677765543
No 73
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=59 Score=24.52 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+..+..+|+...-.=....+....+=++|+.|++...+|++...+|+.+.-.|+.....+..
T Consensus 75 ~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 75 MDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred CceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333344456688888899999999999999999999999999988876654
No 74
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=54.42 E-value=70 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 033198 100 VISMLDKYVAVLES 113 (125)
Q Consensus 100 ~a~~LD~ysk~LE~ 113 (125)
-|..|+.-+.+|..
T Consensus 74 ~V~~LE~~v~~LD~ 87 (99)
T PF10046_consen 74 QVTELEQTVYELDE 87 (99)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 75
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=53.42 E-value=69 Score=21.89 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 71 EQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 71 ~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
..++++|.++.+.+.++..+=++..+.-....+|+.|
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~Y 39 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDY 39 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555555555555555555
No 76
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.90 E-value=1.4e+02 Score=24.83 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
..|..|+...+.||..-..|-.-...|+.||..|+
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 34455566666666666666544555666665554
No 77
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=51.48 E-value=42 Score=21.22 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q 033198 92 QQVTQFEAVISMLD-KYVAVLESKMQ 116 (125)
Q Consensus 92 ~~V~~LE~~a~~LD-~ysk~LE~K~k 116 (125)
..+++||.++++|+ .|-.+||..-+
T Consensus 21 ~nL~ELE~is~rlg~~Y~~~LeeaK~ 46 (51)
T PF11433_consen 21 RNLTELERISKRLGKSYQIRLEEAKE 46 (51)
T ss_dssp HHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 45678999999998 68899986544
No 78
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=51.05 E-value=1.2e+02 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=12.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGSFDEYVQQI 87 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI 87 (125)
.+.+...++...+..+.+....+...++++
T Consensus 189 ~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l 218 (291)
T TIGR00996 189 DIGALIDNLNRVLDVLADRSDQLDRLLDNL 218 (291)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444444444444444444444443333
No 79
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=50.69 E-value=32 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
.+|+.|.+||+.|.-|+.|...|
T Consensus 102 kLE~EvreLEQlV~DLE~WLDal 124 (135)
T PF15466_consen 102 KLEKEVRELEQLVRDLEEWLDAL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999997654
No 80
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=50.43 E-value=93 Score=22.36 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=60.2
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 033198 35 LQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYV-AVLE 112 (125)
Q Consensus 35 l~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ys-k~LE 112 (125)
++.+.....++-.||.....+|..... .|...++..+..-+.++.-|..-..+-.+..+.+.++..+-++. .+-|
T Consensus 58 ~e~~~~k~q~~~~~n~~e~e~Y~~~~~---~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~sR~e 133 (139)
T PF05615_consen 58 FEFSILKSQLILEMNKRERENYEQLNE---EIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPTSREE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345556778899999999999987764 56677778888888899999999999999999999998887766 4433
No 81
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=50.35 E-value=78 Score=21.51 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEA 99 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~ 99 (125)
.+||.+..+++.|+.
T Consensus 42 ~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 42 KKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 82
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.11 E-value=1.2e+02 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 117 (125)
.+..|.+|+.-+..|+.=+...|.+|.+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555544
No 83
>PRK07857 hypothetical protein; Provisional
Probab=50.01 E-value=20 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..+..+.++||+||.++-+|
T Consensus 28 ~~L~~lR~eID~ID~eIl~L 47 (106)
T PRK07857 28 AEIDELREEIDRLDAEILAL 47 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45778999999999998665
No 84
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.69 E-value=1.6e+02 Score=24.74 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 033198 16 LAESLNDLFTSVSAMVKSE 34 (125)
Q Consensus 16 L~~l~~~~f~~vs~yl~~E 34 (125)
...++..=|..|-.|-..+
T Consensus 111 ~r~lm~~Qf~lvK~~aRl~ 129 (312)
T smart00787 111 VKLLMDKQFQLVKTFARLE 129 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 85
>PRK02119 hypothetical protein; Provisional
Probab=49.56 E-value=75 Score=21.05 Aligned_cols=15 Identities=7% Similarity=0.332 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q 033198 104 LDKYVAVLESKMQSL 118 (125)
Q Consensus 104 LD~ysk~LE~K~k~l 118 (125)
|-.-.+.|-.+++.+
T Consensus 42 L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 42 MQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333333344433
No 86
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=49.56 E-value=60 Score=20.92 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+|+..+..||......=..++.....++.|++
T Consensus 5 ~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~ 36 (57)
T PF02346_consen 5 DIEERLMVLEKDFRNAIKCCKENSEAIKRLEH 36 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444444444444444444444443
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.36 E-value=1.7e+02 Score=25.93 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..|..|+.++...+.-.++++.--..++.+++.++.
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444444445555554443
No 88
>PLN02939 transferase, transferring glycosyl groups
Probab=49.28 E-value=1e+02 Score=30.03 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 66 l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|...---|+.--..|+.-+..+-++|+.|-.||.--.-||++.+.||+||-..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333445555667777888889999999999999999999999999996544
No 89
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=48.81 E-value=59 Score=19.66 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=37.8
Q ss_pred hhHHHHHHhHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 57 KGFGDVAAGLRVFVEQLKK-KSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 57 ~~m~~~a~~l~~~~~~Ln~-ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.+++.-...|...++-|.. ....-....+.++.|...+..+..++..|=.|++
T Consensus 11 Helr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 11 HELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777 2222233467888889999999999988877765
No 90
>PRK09793 methyl-accepting protein IV; Provisional
Probab=48.77 E-value=1.8e+02 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=19.7
Q ss_pred CCCCCcChhhHHHHHHHHHHHHHHHHHHHhh
Q 033198 3 GKEEEPKTEARDELAESLNDLFTSVSAMVKS 33 (125)
Q Consensus 3 ~~~~~~~~~~~d~L~~l~~~~f~~vs~yl~~ 33 (125)
|++=+--++....|++-++.....+...|+.
T Consensus 389 GrGFAVVA~EVR~LAe~t~~a~~~I~~~i~~ 419 (533)
T PRK09793 389 GRGFAVVAGEVRNLASRSAQAAKEIKGLIEE 419 (533)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444344455557777777777778887764
No 91
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.75 E-value=1.4e+02 Score=23.93 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhhhhhhHH----HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh------------------
Q 033198 23 LFTSVSAMVKSELQGTNNTL----ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF------------------ 80 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~----~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l------------------ 80 (125)
+|+++.+|+.+.++...+.. ++|+..=+.+-....+.++.+..+-..-..+..+++.+
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45555555555554333221 44444444444444444444444444444444444333
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 81 ------------DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 81 ------------~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+.|-+++...+.+++.+...+.+|-.=..+||.|+..+..
T Consensus 83 ~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 83 NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444455555555555555555555555555555443
No 92
>PRK09039 hypothetical protein; Validated
Probab=48.67 E-value=1.6e+02 Score=24.72 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHhhhhhhhhhHHHHHHHHhHHHHHHHh-------hHHHHHHhHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHH
Q 033198 29 AMVKSELQGTNNTLELLEKMNLRVAEEYK-------GFGDVAAGLRVFVEQLKKKSGSFDE----YVQQIDSIEQQVTQF 97 (125)
Q Consensus 29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~-------~m~~~a~~l~~~~~~Ln~ky~~l~~----yl~qID~Ie~~V~~L 97 (125)
.=++.++..-..+|.-++........-|. .+..-+..+...+...+..|.+-.| .-+||..+..|+..|
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444333 4455666667777777777666444 446777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 033198 98 EAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 98 E~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|........-.+....++..+.
T Consensus 157 e~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 157 EAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666665555554
No 93
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=48.33 E-value=23 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
.+|.++..+||.||.++-+|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998766
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.21 E-value=2e+02 Score=25.70 Aligned_cols=57 Identities=14% Similarity=0.399 Sum_probs=32.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGSFDEYVQQ---------IDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~l~~yl~q---------ID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
.++.....|...+..+...+..|..+... +..|+..+..|+..+..+=.+.+.|...
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~ 223 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKE 223 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444555555555666555555554433 5666666666666666666665555443
No 95
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.18 E-value=2.4e+02 Score=26.59 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=41.2
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhh
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE-YVQQIDSIEQQVTQFEAVISMLDK-------YVAVLESKMQSLYQ 120 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~-yl~qID~Ie~~V~~LE~~a~~LD~-------ysk~LE~K~k~l~~ 120 (125)
--.||......+..+...++.|+.+|..+.. |-+..+.++..+..|..-+..+.. -...||+.++.+..
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777776666543 334445555555555444444444 66777777776543
No 96
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.09 E-value=1.8e+02 Score=25.04 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
...++..+......|.+....|+.--+.|+..+...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555555544
No 97
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=47.85 E-value=72 Score=22.11 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=13.3
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ 85 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~ 85 (125)
.|..+......|..-+..|++|...|..-|+
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~ 57 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQ 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444444444444444444444443333333
No 98
>PRK00846 hypothetical protein; Provisional
Probab=47.60 E-value=87 Score=21.27 Aligned_cols=33 Identities=3% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|+++.+.|++.-..+..|-.-.+.|=.|+++++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555555566666666665
No 99
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.37 E-value=3.2e+02 Score=27.65 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=50.2
Q ss_pred HHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 29 AMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQ----LKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~----Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
.-+.|++..+..++++|.++-+....+|.+++............ +...-..|...-+.++++++.+.++=....
T Consensus 496 n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 496 NEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 34679999999999999999999999999888877765444443 333334444444456666666555544443
No 100
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=47.37 E-value=23 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
.+..+..+||+||.++-+|
T Consensus 5 ~L~~lR~~ID~ID~eIl~L 23 (102)
T TIGR01801 5 SLEDLRAEVDQLNRQILAL 23 (102)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5888999999999998766
No 101
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=47.29 E-value=6.3 Score=36.19 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
.+++++.++.++|+.+.++++....|..+++++...
T Consensus 68 ~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~ 103 (759)
T PF01496_consen 68 EIDELEEELEELEEELRELNENLEKLEEELNELEEE 103 (759)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777666666666655543
No 102
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=47.29 E-value=85 Score=21.04 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=39.5
Q ss_pred HHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 033198 45 LEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 45 Le~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~ 99 (125)
..++|-++..--.++.|.|.||-+.-.++..--+.--.-..++|..-..+.+||.
T Consensus 15 vrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELaklen 69 (71)
T COG5420 15 VRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKLEN 69 (71)
T ss_pred HHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777778888888888877777766655544445667777777777764
No 103
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=47.23 E-value=84 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 033198 101 ISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 101 a~~LD~ysk~LE~K~k~l~~~ 121 (125)
|...+.--|-|++||+.++..
T Consensus 70 v~~~E~~mk~l~~k~~~~e~~ 90 (101)
T PF12308_consen 70 VRKMETQMKGLESKFRQVEDD 90 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 444455556777777776643
No 104
>PRK07248 hypothetical protein; Provisional
Probab=47.16 E-value=24 Score=23.63 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|..+.++||+||.++-.|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVAL 20 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677889999999998766
No 105
>PRK14011 prefoldin subunit alpha; Provisional
Probab=46.78 E-value=1e+02 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhcCC
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISML----DKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~L----D~ysk~LE~K~k~l~~~~~ 123 (125)
..-|-..|+.+++...+|..++.++ +.-..+|+.|+..++++.+
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~ 137 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445555555555554444443 4444556688887765543
No 106
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=46.68 E-value=1.9e+02 Score=25.01 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=17.6
Q ss_pred CCCCCcChhhHHHHHHHHHHHHHHHHHHHhh
Q 033198 3 GKEEEPKTEARDELAESLNDLFTSVSAMVKS 33 (125)
Q Consensus 3 ~~~~~~~~~~~d~L~~l~~~~f~~vs~yl~~ 33 (125)
|++=+--++..-.|++-++.....+...|+.
T Consensus 391 GrGFAVVA~EVr~LA~~t~~st~~I~~~i~~ 421 (553)
T PRK15048 391 GRGFAVVAGEVRNLASRSAQAAKEIKALIED 421 (553)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333444446666666666677777753
No 107
>PRK06285 chorismate mutase; Provisional
Probab=46.56 E-value=26 Score=24.02 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..|.++..+||.||.++-.|
T Consensus 7 ~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 7 KRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998765
No 108
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.21 E-value=72 Score=19.97 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
.|.+++..|..|+.-...|-.=...|...+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333333
No 109
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=46.00 E-value=2.1e+02 Score=26.32 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh-------HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHH-HHHHHH
Q 033198 17 AESLNDLFTSVSAMVKSELQGTNNTLELLEKMN-------LRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE-YVQQID 88 (125)
Q Consensus 17 ~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN-------~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~-yl~qID 88 (125)
.++...=|-.++.+|++.+.--..++.++..=| +..-.+|-++...-..+...+.--.+....++. |++.+-
T Consensus 280 ~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~ 359 (582)
T COG5158 280 NDNKFLNFGEVGEKLKKLAKELKTKAQLRHKENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFS 359 (582)
T ss_pred HHhccCchhhHHHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444577889999999999999999888655 555667777777778888888877788888775 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
+||+.+......=..++..-..
T Consensus 360 eIEq~l~~~~~~~~~i~Dli~~ 381 (582)
T COG5158 360 EIEQNLSTGNDVKSDISDLIEL 381 (582)
T ss_pred HHHHhhhcCCcchhhHHHHHHH
Confidence 9999888776433333333333
No 110
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=45.95 E-value=22 Score=25.29 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQVTQFEAVISML 104 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~L 104 (125)
+-|.++|.+||++|..|
T Consensus 34 ~pi~E~i~kLe~~addL 50 (96)
T PRK00965 34 DPIEEEINKLEALADDL 50 (96)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555666555444
No 111
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.69 E-value=1.4e+02 Score=23.20 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 033198 17 AESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQ 96 (125)
Q Consensus 17 ~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~ 96 (125)
.-.+.-.-.+.+..|+-||..+..- +...+..-=.+|++..+.+...+..|+...........+-..++.++..
T Consensus 89 r~iv~~tsancs~QVqqeL~~tf~r------L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 89 RLIVSFTSANCSHQVQQELSSTFAR------LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp ---------------------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455677777777776543 3344444445666666666666666666666666555555555555554
Q ss_pred HH
Q 033198 97 FE 98 (125)
Q Consensus 97 LE 98 (125)
|+
T Consensus 163 F~ 164 (171)
T PF04799_consen 163 FQ 164 (171)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.67 E-value=1.7e+02 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 76 KSGSFDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 76 ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
...++...-..|..+..+..++..-+..++
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444
No 113
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=45.46 E-value=25 Score=23.27 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|..+.++||.||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (81)
T TIGR01805 1 LELIRKKIDEIDDKLVVL 18 (81)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456788999999998765
No 114
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=45.28 E-value=45 Score=20.50 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
-.-.++++|++++..|..+...|+.
T Consensus 40 ~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 40 LLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777788777777777664
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.23 E-value=1.8e+02 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 88 DSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
.+.+.++..++..+..+..=..++...+.+++
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 116
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=45.21 E-value=25 Score=23.22 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999988765
No 117
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=44.98 E-value=27 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
++..+.++||.||.++-+|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998766
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.65 E-value=2.7e+02 Score=27.27 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFD----EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~----~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
...|.++...+.-...-.+.++.+|.+|. ..+.+-|+|-+|++-=++....++.--..|...+.+++|..
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888888888888888888875 46888899999988888888888888888888888887764
No 119
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.07 E-value=1.7e+02 Score=23.48 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 44 LLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 44 LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
-|++.=..-...|....+.+..+...+..|..|+.+|....+.+......-..-+.+...+.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~ 157 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLG 157 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555566666666666666666666666666666655555554444444444443
No 120
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=44.00 E-value=1.5e+02 Score=22.91 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+|+++......++..+.-+..++.+-..- .+++|.++|.+|+.++.+.
T Consensus 87 ~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~eqV~el~~i~emv 134 (157)
T COG3352 87 NIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444443222 5778888888888776543
No 121
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.82 E-value=1e+02 Score=21.64 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=27.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 72 QLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 72 ~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.+++....++...++|+.+...+.+++.+...|+...+
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455666777888888888888888888887754
No 122
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=43.79 E-value=53 Score=21.97 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=15.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198 71 EQLKKKSGSFDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 71 ~~Ln~ky~~l~~yl~qID~Ie~~V~~LE 98 (125)
++....-.-|.....+|+.+|.+|..||
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555556666666666555
No 123
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=43.63 E-value=28 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|..+..+||.||.++-.|
T Consensus 1 L~~lR~~ID~iD~~iv~L 18 (76)
T TIGR01807 1 LEELRNKIDAIDDRILDL 18 (76)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998665
No 124
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=43.52 E-value=93 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 76 KSGSFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 76 ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
....++..-.+|..|+.++..|......||.
T Consensus 79 ~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 79 VAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777778888888888888877776
No 125
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=43.51 E-value=2e+02 Score=24.31 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 68 VFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 68 ~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
...+.++.|.+- --.+-+|+.+++...+.+-++-..|-.|..+||..-..|++-
T Consensus 73 ~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 73 TEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 334444444443 334567788888888888888888888888888766655553
No 126
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=43.18 E-value=31 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..|.++..+||.||.++-.|
T Consensus 8 ~~L~~lR~~ID~ID~~iv~L 27 (101)
T PRK07075 8 TGLDDIREAIDRLDRDIIAA 27 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998766
No 127
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.15 E-value=1.7e+02 Score=23.18 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=23.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~ 99 (125)
.+..|.+...-..++....++|.+..+.=. -++.|-.||.+++..+.
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~ 176 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRS 176 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555544221 33334445554444443
No 128
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.10 E-value=1.2e+02 Score=21.65 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
|++....++.|-++|..|..++..|+.....+..-.
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554444433
No 129
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=42.99 E-value=2.1e+02 Score=25.92 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHH--hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 42 LELLEKMNLRVAEEY--KGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 42 ~~LLe~mN~~~s~kY--~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
=++|.-+|.--+-|. -++.+.++++-.-.+--+..|+-++...+.=|++|.+++.||.- |++.+..|++
T Consensus 396 RkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~k---l~~l~~~l~s 466 (489)
T KOG3684|consen 396 RKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESK---LEALTASLSS 466 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 355555655433333 35667777777777888888888999888899999999888864 4444555544
No 130
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.89 E-value=1.6e+02 Score=23.05 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFE----AVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE----~~a~~LD~ysk~LE~K~k~l 118 (125)
+...|.+-+..-.+|++..+.|+.+-.+ -..|+.=+++++.++-+|. .+...+|.-.+..|.+-|..
T Consensus 37 Tee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~ 108 (215)
T PF07083_consen 37 TEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEE 108 (215)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777666655 3455666666666665544 45566777777777665544
No 131
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=42.84 E-value=44 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 69 FVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 69 ~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.-++.+..--+|+||+++|+.--.+=.- -+..++|.|...|=
T Consensus 78 eqee~k~~~~eLqPYFdKLN~~~SsK~v--lt~~E~d~y~eALm 119 (162)
T PF12207_consen 78 EQEEYKKLTMELQPYFDKLNGHKSSKEV--LTQEEYDQYIEALM 119 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---HHHH--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHhcCCcchhhh--cCHHHHHHHHHHHh
Confidence 3456667778899999999987333222 34567888877763
No 132
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=42.53 E-value=1.9e+02 Score=23.74 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 54 EEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI-DSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 54 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
-+...+.+.+..|...+..|-.+...|..++..+ ..|+.-+..+++++..+..-...+-.++..+...
T Consensus 226 w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (304)
T PF02646_consen 226 WRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKLKEL 294 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 3455666666666666666666666665555544 2344555556666666666666665555555443
No 133
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.37 E-value=1.4e+02 Score=22.05 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~ 106 (125)
.+|...|..+-.+|.-||.
T Consensus 99 ~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 99 SQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 134
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.07 E-value=1.3e+02 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
+..|+.-...++.-.+.||.+..
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~ 95 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEK 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 135
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=42.02 E-value=58 Score=22.97 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=20.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 75 ~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
-.+..+...-+.|+.|+..|..||.-.---..-.+.|..++
T Consensus 5 l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v 45 (116)
T PF10552_consen 5 LLMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAV 45 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33444555555666666666666544433333334444333
No 136
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=41.99 E-value=1.1e+02 Score=20.89 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+..+-++|..+..++..++..+.++
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 93 LEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 137
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.98 E-value=1e+02 Score=20.42 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
+.||..+|..|-..|..+-.....|-.-..+
T Consensus 59 ~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 59 LDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888877776655544433
No 138
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=41.89 E-value=1.3e+02 Score=25.67 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
.+....+..++..=+.....|++-+++|++++.++.+++.-|..+-.-
T Consensus 256 ~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~ 303 (307)
T PF15112_consen 256 SKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQ 303 (307)
T ss_pred hHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhh
Confidence 334444555555555566778888899999999998888877665443
No 139
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.88 E-value=77 Score=23.53 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV--TQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V--~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
...+|..-...+...+..|+.....+..=+..+ .... .+|...+..|..=...|+.|+..+..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L---~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASL---SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555554444444333333 2211 22333333444444555666655554
No 140
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=41.80 E-value=1.2e+02 Score=21.14 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=36.7
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHH----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKS----GS-FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky----~~-l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+..+.+++=....|...+......- .. ..-+-+++..+++++..|+.....|+.+...++.
T Consensus 49 I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 49 IKEARQLGFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHcCCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555554433211 11 2235567788888888888888888877766653
No 141
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=41.64 E-value=32 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
||.++.-+|.-=..|+.+...||.+++.+
T Consensus 76 ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l 104 (116)
T PF05064_consen 76 LDQELDFIEAQQKELEELLDPLEKQVEKL 104 (116)
T ss_dssp HHHHHHHHHHHHHCHHHHHCCCCCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444333
No 142
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.59 E-value=1.2e+02 Score=21.32 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
-..+++..++.++..|......|+......+.+
T Consensus 84 ~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 84 KIEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655555554443
No 143
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=41.54 E-value=1.9e+02 Score=23.31 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHH
Q 033198 29 AMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE 82 (125)
Q Consensus 29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~ 82 (125)
.++.|+|+.+-.-..+=++.=......-.-|.....++++.-+.+.++-..+..
T Consensus 91 ~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~ 144 (205)
T KOG1003|consen 91 VIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE 144 (205)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence 367788887766655555544444444445566666666666666655444433
No 144
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=1.2e+02 Score=25.11 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHH
Q 033198 61 DVAAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQFEAVI 101 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~LE~~a 101 (125)
+....|+..+-++|+.+..|...+. .||.||.+|.....-|
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 3455666666777777666665553 5666666666554444
No 145
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=41.19 E-value=71 Score=30.53 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHH----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 50 LRVAEEYKGFGDVAAGLRVFVEQLKKKS----GS-FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 50 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky----~~-l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
-+...++.+|.....=+...++.-.-.- +. -.|--..|+++|.++++||.=+-++++....|..++..+..
T Consensus 52 v~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 52 VNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455667777766655555444422111 11 14567899999999999999999999999999999887754
No 146
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.15 E-value=2.4e+02 Score=24.40 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=38.6
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
..++..+.+....+...++.++....++++..++++.+..++.+++.....+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~ 349 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN 349 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888888888888888877777777777777777776554443
No 147
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.89 E-value=1.5e+02 Score=22.15 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=20.0
Q ss_pred HhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 033198 77 SGSFDEYVQQIDSIEQQV----TQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V----~~LE~~a~~LD~ysk~LE~K~ 115 (125)
...++.-+.++...|.+- +.++.....++.+..+|+.-+
T Consensus 151 ~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 151 KKKLQETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555433 345555566666666655433
No 148
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.86 E-value=1.2e+02 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.-..+++..|+.++..|+.+...||....
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888876553
No 149
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=40.79 E-value=41 Score=23.67 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198 19 SLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 19 l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE 98 (125)
+..+-|..++.|-...+-....+- .+.| .|+..+ ..--+.+|-+++|++.+|.+++......+
T Consensus 17 sLr~Ff~RT~~~W~~~a~~~~~~~---------~~~K--eLrk~a------F~lAe~Ry~E~k~~l~~le~~~ee~~~~e 79 (96)
T PF13422_consen 17 SLRDFFARTSEYWQEWAIESNRDA---------HRGK--ELRKDA------FDLAEERYWELKPELDELEDLEEEQAGIE 79 (96)
T ss_pred cHHHHHHHhHHHHHHHHHHccccc---------cchH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 455678888887765554443322 1222 233222 33447899999999999999999888888
Q ss_pred HHHHH
Q 033198 99 AVISM 103 (125)
Q Consensus 99 ~~a~~ 103 (125)
.++..
T Consensus 80 e~~~~ 84 (96)
T PF13422_consen 80 EVVSR 84 (96)
T ss_pred HHhhh
Confidence 77653
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=40.70 E-value=4.6e+02 Score=27.64 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 033198 24 FTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKS 77 (125)
Q Consensus 24 f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky 77 (125)
+.++-.||..|.++....|.++..=|..-..+|.-+...+.++...+......+
T Consensus 1151 L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~ 1204 (1822)
T KOG4674|consen 1151 LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS 1204 (1822)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999998888888887776666555
No 151
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=40.65 E-value=29 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQVTQFEAVISM 103 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~ 103 (125)
|-|.++|.+||++|..
T Consensus 33 ~pi~eqi~kLe~~add 48 (97)
T PF05440_consen 33 DPINEQIDKLEKAADD 48 (97)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 152
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=40.34 E-value=1.5e+02 Score=21.86 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
..+-+++......+...+.+=+.++..+.+.+.+|+++..+++..-...
T Consensus 55 ~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL 103 (131)
T PF10158_consen 55 AKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLL 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888888888888999999999999999998888754433
No 153
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.34 E-value=99 Score=19.82 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.7
Q ss_pred HhHHHHHHHHH
Q 033198 64 AGLRVFVEQLK 74 (125)
Q Consensus 64 ~~l~~~~~~Ln 74 (125)
.+|...+..+.
T Consensus 6 ~~i~~~l~~~~ 16 (79)
T PF05008_consen 6 AEIKSKLERIK 16 (79)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHhh
Confidence 34444444444
No 154
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=40.13 E-value=33 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|.++..+||.||.++-.|
T Consensus 1 L~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 1 LADIREAIDRIDLALVQA 18 (82)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998766
No 155
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=40.02 E-value=1.9e+02 Score=22.98 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=40.8
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 033198 33 SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 33 ~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~ 95 (125)
-|-+....|++-+++-=.-...+|.+++.++.|...+=+.|+ ..+..|+..|+.-++.-.
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lk---k~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLK---KCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455666666666666677899999999999988866666 455566666655555443
No 156
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.89 E-value=2.7e+02 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHH
Q 033198 35 LQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVE 71 (125)
Q Consensus 35 l~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~ 71 (125)
+..+..++.=+++-=+.+..+..++.....+++..+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333334444444444444443333
No 157
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.21 E-value=1.3e+02 Score=20.73 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
...+-+.|+.|++++..|+.....+-.....|+..+..++
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566777777777777777777777777776665543
No 158
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=39.05 E-value=1.2e+02 Score=20.39 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 033198 27 VSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKK 75 (125)
Q Consensus 27 vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 75 (125)
++.||++=|+-+...|. .|-.-.+.+-.+|..-..+|++++.+|-.
T Consensus 17 LTs~vQ~lLQq~QDkFQ---tMSDQII~RiDDM~~riDDLEKnIaDLm~ 62 (73)
T KOG4117|consen 17 LTSVVQGLLQQTQDKFQ---TMSDQIIGRIDDMSSRIDDLEKNIADLMT 62 (73)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 45556665555555543 34555666666666666666666655543
No 159
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.03 E-value=1.3e+02 Score=20.67 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 033198 88 DSIEQQVTQF 97 (125)
Q Consensus 88 D~Ie~~V~~L 97 (125)
++++..|..|
T Consensus 35 ~~~e~ei~~l 44 (89)
T PF13747_consen 35 DELEEEIQRL 44 (89)
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 160
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=38.94 E-value=36 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~L 97 (125)
|..+.++||.||.++-.|
T Consensus 1 L~~lR~~ID~ID~~il~L 18 (83)
T TIGR01799 1 LEDLRGEIDGVDQELLHL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999988665
No 161
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.73 E-value=1.3e+02 Score=20.85 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
+.|+.||..+..|+.-...|..=.+.++.+++.+
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 162
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=38.69 E-value=1.6e+02 Score=21.60 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 57 KGFGDVAAGLRVFVEQLKKKSGSFDEYV-QQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 57 ~~m~~~a~~l~~~~~~Ln~ky~~l~~yl-~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
..+.....+++..+.+=+.+...-++.+ ..+|++.+.|+.||..+..|..=.+.
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3455566677777777777887777766 57999999999999988887765544
No 163
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.47 E-value=1.3e+02 Score=20.95 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
++..-++|..+...+.+++.+...|
T Consensus 15 i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 15 VESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 164
>PRK08724 fliD flagellar capping protein; Validated
Probab=38.43 E-value=3.4e+02 Score=25.48 Aligned_cols=14 Identities=0% Similarity=0.292 Sum_probs=6.6
Q ss_pred HHhHHHHHHHhhHH
Q 033198 47 KMNLRVAEEYKGFG 60 (125)
Q Consensus 47 ~mN~~~s~kY~~m~ 60 (125)
+++++...++.++.
T Consensus 575 KL~~AL~~npd~V~ 588 (673)
T PRK08724 575 MLDRQLNNNFNKLE 588 (673)
T ss_pred HHHHHHHhCHHHHH
Confidence 44444444444444
No 165
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.40 E-value=2e+02 Score=22.72 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH--
Q 033198 12 ARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS-- 89 (125)
Q Consensus 12 ~~d~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~-- 89 (125)
..+.|..-+.++...+..|+.+=-..+...-.+...++.-.. .|.+=..++..+.++..-|.+........++++..
T Consensus 10 ~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~-~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l 88 (200)
T cd07639 10 EVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH-HGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSF 88 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888888888877888888888888877654 55665568889999999998888888888877653
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 -------IEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 90 -------Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
+.+.|...=+.=.+.|..+..+++.+.
T Consensus 89 ~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~ 122 (200)
T cd07639 89 KQQLQLLVKEDLRGFRDARKEFERGAESLEAALQ 122 (200)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHH
Confidence 344444445555666666666665544
No 166
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=38.40 E-value=30 Score=25.05 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISML 104 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~L 104 (125)
+|-|++|+.+||+.|..|
T Consensus 33 v~pi~Eqi~kLe~~vddl 50 (108)
T COG4062 33 VDPIEEQIKKLETLVDDL 50 (108)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 466777777777777654
No 167
>PRK01203 prefoldin subunit alpha; Provisional
Probab=38.37 E-value=1.1e+02 Score=22.69 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+.|+.|.+++.+||.++...-.-.++|+..+..+.
T Consensus 87 ~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988887765
No 168
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=38.19 E-value=61 Score=26.32 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
..|+.|+..|.+||+++...+...
T Consensus 184 ~kLd~yl~sireiE~rl~~~~~~~ 207 (302)
T PF07586_consen 184 QKLDQYLDSIREIEKRLQQAEAWA 207 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 569999999999999997766554
No 169
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=38.16 E-value=72 Score=17.60 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
...++.+...+..+..++..|-.|+
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~l~~~~ 64 (65)
T cd00082 40 REYLERIREEAERLLRLINDLLDLS 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777888888888877765
No 170
>PF08775 ParB: ParB family; InterPro: IPR014884 ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognises A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module []. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site []. ; PDB: 1ZX4_A 2NTZ_B.
Probab=38.14 E-value=91 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 033198 37 GTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKK 75 (125)
Q Consensus 37 ~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 75 (125)
.+..||++|-++-+....+=..+.+.+.++...+..+..
T Consensus 7 Ls~~DY~~L~kv~~~~~~~~~~l~~~i~~v~~~~~~~~~ 45 (127)
T PF08775_consen 7 LSNSDYKLLLKVMKQLEKNKVSLDELIDNVRSEIENIDD 45 (127)
T ss_dssp --HHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 467899999998887777777777777777766655554
No 171
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=38.07 E-value=75 Score=17.79 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
..-++.++..+..+..++..+-.|++
T Consensus 37 ~~~~~~~~~~~~~~~~~v~~l~~~~~ 62 (66)
T smart00388 37 REYLETILRSAERLLRLINDLLDLSR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888887764
No 172
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=37.96 E-value=71 Score=19.88 Aligned_cols=15 Identities=53% Similarity=0.707 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhcCC
Q 033198 109 AVLESKMQSLYQHHP 123 (125)
Q Consensus 109 k~LE~K~k~l~~~~~ 123 (125)
..||.|-+.|-.++|
T Consensus 29 aeLe~KR~~Lv~qHP 43 (46)
T PF08946_consen 29 AELEAKRQRLVDQHP 43 (46)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCC
Confidence 444455555555444
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.61 E-value=1.7e+02 Score=21.86 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 033198 23 LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF----DEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l----~~yl~qID~Ie~~V~~LE 98 (125)
.+..=..-+..||+.+......+..=|.+.-.....+..-...+...+.+|..--..+ ....+.+..-..+|..||
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788999999999999988888888888878777777777776666444333 334455555666777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033198 99 AVISMLDKYVAVLESKM 115 (125)
Q Consensus 99 ~~a~~LD~ysk~LE~K~ 115 (125)
....-+....+.+|..-
T Consensus 101 ~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 101 SLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 77777777777777653
No 174
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.51 E-value=1.4e+02 Score=20.74 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
+.-.-+..+++++..+|..+..|+.=-..|+.++++++..
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888888888888777653
No 175
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.39 E-value=3.1e+02 Score=24.75 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
......+...++.++.+...+......-..+...+...+.+...|+.+...|..+
T Consensus 448 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 502 (650)
T TIGR03185 448 LRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREKLLER 502 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444555555555555554443
No 176
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.80 E-value=54 Score=26.63 Aligned_cols=67 Identities=13% Similarity=0.274 Sum_probs=38.8
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKK--------------SGSFDEYVQQIDSIEQQVT-QFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~k--------------y~~l~~yl~qID~Ie~~V~-~LE~~a~~LD~ysk~LE~K~k 116 (125)
...+|.+|++-+..+...+..+..- +.+|.|...-.-.+|..+. .|..++..+|.+++.+...++
T Consensus 52 ~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~ 131 (243)
T cd07666 52 RPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMK 131 (243)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777666666555544433 3333444444444454443 477778888888877777665
Q ss_pred hh
Q 033198 117 SL 118 (125)
Q Consensus 117 ~l 118 (125)
.+
T Consensus 132 ~l 133 (243)
T cd07666 132 GL 133 (243)
T ss_pred HH
Confidence 54
No 177
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=36.37 E-value=1.7e+02 Score=21.31 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHH-------HHHHHHhHHH------------HHHHhhHHHHHH-hHHHHHHHH
Q 033198 14 DELAESLNDLFTSVSAMVKSELQGTNNTL-------ELLEKMNLRV------------AEEYKGFGDVAA-GLRVFVEQL 73 (125)
Q Consensus 14 d~L~~l~~~~f~~vs~yl~~El~~t~~d~-------~LLe~mN~~~------------s~kY~~m~~~a~-~l~~~~~~L 73 (125)
+.+...+.++...+..|+++--....... .|=..|.... ..+|...-+... ........+
T Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 115 (229)
T PF03114_consen 36 KQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQI 115 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777775544444444 4444443322 223333222221 222222333
Q ss_pred HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 74 KKKS-GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 74 n~ky-~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+... .-+..++..+..|.+.+.+++...-..|.|..+++.
T Consensus 116 ~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 116 ESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 448888999999999999999999999999988875
No 178
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.20 E-value=1.2e+02 Score=19.49 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVI 101 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a 101 (125)
++.+|-++|.++++.+
T Consensus 22 en~~i~~~ve~i~env 37 (55)
T PF05377_consen 22 ENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 179
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=36.19 E-value=2.3e+02 Score=22.82 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
|...+.++...=.++++|+..|..-+.....+-.....++.-.+.+++
T Consensus 24 L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~h 71 (243)
T PF07160_consen 24 LSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQH 71 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666666666666666777777777666666666655
No 180
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=36.17 E-value=1.5e+02 Score=20.69 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=38.5
Q ss_pred HhhHHHHHHhHHHHHHHHHHHH-----hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 56 YKGFGDVAAGLRVFVEQLKKKS-----GSFDEYV-QQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 56 Y~~m~~~a~~l~~~~~~Ln~ky-----~~l~~yl-~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
...+++....+......+.... .-|..|+ ..|..+.+.+..++..-...|.+..+++.
T Consensus 56 l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~ 119 (194)
T cd07307 56 LEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKK 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433 2366777 77888888888888888888888877664
No 181
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=35.93 E-value=64 Score=20.17 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSFDEYVQ-QIDSIEQQVTQF 97 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l~~yl~-qID~Ie~~V~~L 97 (125)
..-+...+..+.++|.+++.|+. .+.-=++.+..|
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~L 63 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERL 63 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHH
Confidence 45788889999999999999994 444444444444
No 182
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=35.83 E-value=94 Score=20.94 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 54 EEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 54 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
.+|..-.+...+++.. -...++.+..+.+..++.|..||.++.
T Consensus 24 lHY~~k~~~~~~ls~~------d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 24 LHYRSKRKTAASLSTD------DQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4565555555444332 234466777778888888888888764
No 183
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.60 E-value=1.1e+02 Score=19.62 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
-||+++..||+-.....+-.+.-|.+.+..+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4888888888888888888888887777643
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.45 E-value=3.4e+02 Score=24.56 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=15.4
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ 85 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~ 85 (125)
+...|......+.++.....++...-..+..-++
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~ 385 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQ 385 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3344555555555544444444444333333333
No 185
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=35.05 E-value=44 Score=22.21 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~L 97 (125)
..+..+||.||.++-.|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (83)
T TIGR01797 2 LALREKISAIDEKLLKL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778999999988665
No 186
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=34.98 E-value=2.3e+02 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 033198 85 QQIDSIEQQVTQFEA-VISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~-~a~~LD~ysk~LE~K~k~l~~ 120 (125)
....+|++-|..|.. +..+|..+...++.+++....
T Consensus 77 s~~~~ik~~i~~l~~~i~nql~~~~~~~~~~~kt~~~ 113 (190)
T PF09074_consen 77 SSNEDIKKLIKSLGNQINNQLEKTVNSLSEKVKTVNG 113 (190)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 334445555555544 666777777777777776654
No 187
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=34.82 E-value=88 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=25.9
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGD 61 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~ 61 (125)
+=+++++...+|++..|++.++..-|+++..
T Consensus 43 ~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~ 73 (80)
T PRK15326 43 LLAAYQSKLSEYNLYRNAQSNTVKVFKDIDA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999888777654
No 188
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.74 E-value=1.2e+02 Score=24.53 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 66 LRVFVEQLKKKSGS----FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 66 l~~~~~~Ln~ky~~----l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
++..+..+-.||++ |..-.++||.+|.++.+|-..+..|...-+.|=.
T Consensus 6 ~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~ 57 (234)
T cd07665 6 ATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELAL 57 (234)
T ss_pred HHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555 5556678999999999999999888887777643
No 189
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.72 E-value=2.7e+02 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=3.5
Q ss_pred HHHHhhhh
Q 033198 28 SAMVKSEL 35 (125)
Q Consensus 28 s~yl~~El 35 (125)
...|..+-
T Consensus 152 ~eil~~~~ 159 (555)
T TIGR03545 152 RALLKGED 159 (555)
T ss_pred HHHhccCC
Confidence 44444443
No 190
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=34.67 E-value=79 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD 105 (125)
||.-|.-|.+||.-+..||
T Consensus 72 ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 72 LDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4455555555555555554
No 191
>PRK01203 prefoldin subunit alpha; Provisional
Probab=34.51 E-value=1.4e+02 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+++.-+-+||+.+..++..|..+..+++.-...|+.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667788888888888888888888776666655
No 192
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.51 E-value=5.9e+02 Score=27.05 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=54.3
Q ss_pred HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 30 yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
=+..++.++..++.=++.........|.++.+....+.+.-+.+. .++..+..++++.+..|.+||.....|+.-..
T Consensus 1453 ~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~---~ei~dl~~~~~e~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1453 KLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS---QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666665555555544444 44556666777777777777777777766655
Q ss_pred HHHHHHHhhh
Q 033198 110 VLESKMQSLY 119 (125)
Q Consensus 110 ~LE~K~k~l~ 119 (125)
.|-..+..++
T Consensus 1530 elQ~aLeElE 1539 (1930)
T KOG0161|consen 1530 ELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 193
>PRK09239 chorismate mutase; Provisional
Probab=34.23 E-value=63 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q 033198 77 SGSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V~~L 97 (125)
-..|..+..+||.||.++-+|
T Consensus 9 ~~~L~~lR~~ID~ID~eIv~L 29 (104)
T PRK09239 9 PAELAALRQSIDNIDAALIHM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999998765
No 194
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.00 E-value=3.4e+02 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 033198 62 VAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 62 ~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~ 99 (125)
...++....+.+..+...+..+-..|..+++++.++++
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~ 360 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEE 360 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 195
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.97 E-value=3.7e+02 Score=24.61 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 033198 29 AMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSG 78 (125)
Q Consensus 29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~ 78 (125)
.+++++++-...+.+-|.+.|...-.....|+.-...+...+....+...
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e 188 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEME 188 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665665555555665555555555555555444444333333
No 196
>PRK03918 chromosome segregation protein; Provisional
Probab=33.78 E-value=3.8e+02 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
||.+.+..++..+..+++-+..|....+.++.+++
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~ 338 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333
No 197
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.69 E-value=2.7e+02 Score=23.35 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~~ 123 (125)
.-|..++=..++-|||-+-+.+..||.....|+.-. +-|.+.++++++
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~ 147 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKR 147 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 334445556778888888888888888888887655 456777766653
No 198
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.52 E-value=2.1e+02 Score=21.54 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+..+.++|+.+.+.+..++.-...|
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l 72 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEEL 72 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444333
No 199
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=33.46 E-value=3.1e+02 Score=23.45 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=51.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHH-hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 033198 32 KSELQGTNNTLELLEKMNLRVAEEY-KGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISML------ 104 (125)
Q Consensus 32 ~~El~~t~~d~~LLe~mN~~~s~kY-~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~L------ 104 (125)
+..-.-+.++++-...+|+.....- .++..+.......+..+|+.|.++...-.+=-+|..--..+.++++.|
T Consensus 191 s~k~eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkI 270 (353)
T PF01540_consen 191 STKEEFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKGVEELKKLAQEISSHSNKLKATISELEKKFKI 270 (353)
T ss_pred cchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444556666777777777666654 555666666667777777666665555444444444444444444333
Q ss_pred -HH--------HHHHHHHHHHhhhhc
Q 033198 105 -DK--------YVAVLESKMQSLYQH 121 (125)
Q Consensus 105 -D~--------ysk~LE~K~k~l~~~ 121 (125)
|+ |-.+||.=...|-+.
T Consensus 271 dd~tn~~e~k~fK~qlE~ladqLl~k 296 (353)
T PF01540_consen 271 DDSTNKEEMKKFKNQLENLADQLLEK 296 (353)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Confidence 33 666666555554443
No 200
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=33.32 E-value=2.5e+02 Score=22.43 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.1
Q ss_pred HHhHHHHHHHHHHHHh
Q 033198 63 AAGLRVFVEQLKKKSG 78 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~ 78 (125)
...+.+++..||.-|+
T Consensus 181 ~~kLa~NL~sLN~VYg 196 (202)
T TIGR03513 181 MEKMAANLTSLNEVYG 196 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 201
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.29 E-value=1.8e+02 Score=20.82 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=48.2
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
.+..|.+++.-+.-|.+.+-+=..++..|..-|.. =|..+.++|+=+.-|.=.-.+|+.|+..|+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~---ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKE---KEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999888765554 455666666666666656666666666554
No 202
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.27 E-value=2.8e+02 Score=22.92 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 033198 38 TNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV-TQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 38 t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~K~k 116 (125)
...+...|...|......-.++.+.+ ...+..|=++|..| ..-||-|+-.= ..|+++-..|-+|-...|+++.
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st---~~~Vr~lLqqy~~~---~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDST---ALKVRKLLQQYDIY---RTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhH---HHHHHHHHHHHHHH---HHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566778888887777666666544 33444455555544 44455555443 3488888888888888888888
Q ss_pred hhhhc
Q 033198 117 SLYQH 121 (125)
Q Consensus 117 ~l~~~ 121 (125)
.|+++
T Consensus 85 ~Lq~q 89 (258)
T PF15397_consen 85 KLQQQ 89 (258)
T ss_pred HHHHH
Confidence 88765
No 203
>PHA02414 hypothetical protein
Probab=33.21 E-value=1.9e+02 Score=20.95 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198 15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV 94 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V 94 (125)
+++.|..++=+-=++.=.||+.--. | |..-.....+++++..+|.+.+--=.+||..+ .=||-.+|+.|
T Consensus 5 ~in~Lv~~v~~ledKiQ~Gelt~kg-d-------n~eL~~av~ELRdivvslDKd~Av~sEKqshi---~yQi~~Lee~i 73 (111)
T PHA02414 5 EINNLVSQVETLEDKIQEGELTDKG-D-------NKELEVAVAELRDIVVSLDKDVAVNSEKQSHI---YYQIERLEEKI 73 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCC-c-------hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHH---HHHHHHHHHHH
Confidence 3444444433333444457776443 2 22333456789999999999888878887765 44788888888
Q ss_pred HHHHHHHHHHHHHHH
Q 033198 95 TQFEAVISMLDKYVA 109 (125)
Q Consensus 95 ~~LE~~a~~LD~ysk 109 (125)
+.|++.-..=|.--|
T Consensus 74 ~aL~~~n~ked~~Kk 88 (111)
T PHA02414 74 SALAESNKKEDTEKK 88 (111)
T ss_pred HHHHhccccccchhh
Confidence 888887665554433
No 204
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=33.03 E-value=76 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 97 FEAVISMLDKYVAVLE 112 (125)
Q Consensus 97 LE~~a~~LD~ysk~LE 112 (125)
|+....+||.-|++||
T Consensus 25 lq~Lt~kL~~vs~RLe 40 (47)
T PF10393_consen 25 LQSLTQKLDAVSKRLE 40 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555555555
No 205
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.02 E-value=97 Score=21.23 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
-..+++++|+.++..|+.....|+.+.
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 101 (102)
T cd04789 75 LLLERLSSLAEQIARKQQARDLLAALL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999988888764
No 206
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=32.71 E-value=4.8e+02 Score=26.55 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
.+..|..+|-++...+..+++....|..+...|....+.+
T Consensus 568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~ 607 (1317)
T KOG0612|consen 568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKL 607 (1317)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888888877766555544
No 207
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.70 E-value=40 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
+||+++.++|.+|++-...|+.
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHHhhccccc
Confidence 3555555555555555544333
No 208
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.46 E-value=2e+02 Score=21.00 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHhhHHHHHH-------hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 51 RVAEEYKGFGDVAA-------GLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 51 ~~s~kY~~m~~~a~-------~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.....|+=+..+-+ ++..-.+.|+.+-.+|...++++--.=.||..+...+.+|+.-+-.|+
T Consensus 48 ~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 48 APIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556665544433 344444445555555555555555555555555555555555555544
No 209
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.17 E-value=2.6e+02 Score=22.30 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQ 96 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~ 96 (125)
+.|-..|..+|.++..
T Consensus 258 ~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 258 EEYQAEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHH
Confidence 3333344444444433
No 210
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.93 E-value=4.2e+02 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhh
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKY-------------VAVLESKMQSL 118 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~y-------------sk~LE~K~k~l 118 (125)
...+|..|..-+..|.+.+.+ .|... =|..-++++....+.+|..+.+|..- ++++|++.+..
T Consensus 247 L~~k~~~L~~e~~~LK~ELie--dRW~~--vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~ 322 (683)
T PF08580_consen 247 LEKKWKKLEKEAESLKKELIE--DRWNI--VFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKK 322 (683)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hhHHH--HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence 344555555555555544432 22222 24455666667777777777766655 78888888766
Q ss_pred hhc
Q 033198 119 YQH 121 (125)
Q Consensus 119 ~~~ 121 (125)
.+.
T Consensus 323 ~~~ 325 (683)
T PF08580_consen 323 SHY 325 (683)
T ss_pred hcc
Confidence 553
No 211
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=31.88 E-value=1.2e+02 Score=18.47 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=10.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhH
Q 033198 57 KGFGDVAAGLRVFVEQLKKKSGSFD 81 (125)
Q Consensus 57 ~~m~~~a~~l~~~~~~Ln~ky~~l~ 81 (125)
..|.+.+..+......++.....+.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~ 31 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLE 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 212
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.80 E-value=15 Score=33.51 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+...+......+......|.....+++.|-+.+|.+-....+++..-..++.|-++||.
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777777888899999999999888888888889999888873
No 213
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.75 E-value=4.2e+02 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHH
Q 033198 23 LFTSVSAMVKSELQGTNNTLELLEKM 48 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~~LLe~m 48 (125)
.|..-..|+.|+=+.+.-+=.|..++
T Consensus 201 ~~~~Y~~fl~g~d~~~~~~~Elk~~l 226 (581)
T KOG0995|consen 201 TIRSYTSFLKGEDNSSELEDELKHRL 226 (581)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHH
Confidence 44555666666555444444444333
No 214
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.66 E-value=3.3e+02 Score=23.23 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.9
Q ss_pred hHHHHHHHHhHHHHH
Q 033198 40 NTLELLEKMNLRVAE 54 (125)
Q Consensus 40 ~d~~LLe~mN~~~s~ 54 (125)
+++...-.+-..|+.
T Consensus 194 e~l~~F~~l~~~T~~ 208 (406)
T PF02388_consen 194 EELDDFYDLYKETAE 208 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444443
No 215
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=31.57 E-value=16 Score=26.72 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 83 YVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~ 103 (125)
+-++|++.+..|..|+..+..
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~ 70 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPD 70 (138)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 216
>PRK07737 fliD flagellar capping protein; Validated
Probab=31.11 E-value=3.8e+02 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
++|+.|++++..||. +|+.+-.+|-.+|-+|+
T Consensus 448 ~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale 479 (501)
T PRK07737 448 KDLNQIETQIDRFQD---RLKQIEDRYYKKFSAME 479 (501)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456667777666664 44555556666666554
No 217
>PHA03395 p10 fibrous body protein; Provisional
Probab=31.06 E-value=1.7e+02 Score=20.44 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 65 GLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
-|+..++.+..|-..|+. ++++++..+-.++++-.+||+-+..|-
T Consensus 8 ~Ir~dIkavd~KVdalQ~---~V~~l~~nlpdv~~l~~kLdaq~~~Lt 52 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQA---AVDDVRANLPDVTEINEKLDAQSASLD 52 (87)
T ss_pred HHHHHHHHHhhHHHHHHH---HHHHHHhcCCcHHHHHHHHHhHHHHHH
Confidence 345555555555444443 555555555555555555665555543
No 218
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=30.93 E-value=1.4e+02 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
.+..+++|.+...|.++|.++|.+
T Consensus 172 ~~LrkK~d~~k~~l~KvE~~~y~l 195 (200)
T PF01997_consen 172 DELRKKFDVLKYSLKKVEEVVYDL 195 (200)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhh
Confidence 567789999999999999999875
No 219
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=30.67 E-value=94 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 93 QVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 93 ~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
++..+|.-..+|+.=..-||+|+.++
T Consensus 22 kL~~~e~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 22 KLSDMEQRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333344444444555555543
No 220
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.35 E-value=2.2e+02 Score=20.93 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|+.+-.-+..+..-+.-||.|+..++
T Consensus 98 v~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 98 VSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555566666666654
No 221
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.18 E-value=4.4e+02 Score=24.22 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
..++.|-.+..++..++.-+..-++--++|+..+.++-..
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455666666666666666666677777777777766554
No 222
>PRK04654 sec-independent translocase; Provisional
Probab=30.17 E-value=3e+02 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=16.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGSFDEYVQQ 86 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~l~~yl~q 86 (125)
.+++...+++..++++++.-.++.+|..+
T Consensus 69 ~i~~~~~~lk~~~~el~q~a~~~~~~~~~ 97 (214)
T PRK04654 69 SLREAEDQLRNTQQQVEQGARALHDDVSR 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 35555555666666666555555555433
No 223
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=30.08 E-value=1.8e+02 Score=19.69 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
-..-+-+++..++.++..|..+...||.
T Consensus 74 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 74 LLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888877764
No 224
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=30.07 E-value=2.7e+02 Score=21.79 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 033198 70 VEQLKKKSGSFD-------EYVQQIDSIEQQV-TQFEAVISMLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 70 ~~~Ln~ky~~l~-------~yl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~K~k~l~~~~~ 123 (125)
+..++.+|++|. .|+.+||.-++.. ..+-.....-+.-..+|+..+..++.-.|
T Consensus 68 VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~P 129 (172)
T KOG3366|consen 68 VDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVKSARP 129 (172)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445555666665 7889998876543 34444455555555666666666655444
No 225
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.92 E-value=2.9e+02 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 92 QQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 92 ~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.+...+|+.+..|+.=-++|+.+++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555543
No 226
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.83 E-value=3.2e+02 Score=23.67 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
..+...++..-+.+++.+..+...-+..++...++..|.+++..||+....+.
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544333333455566666777777776666554443
No 227
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.64 E-value=1.6e+02 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
+.-..|-.+|.+...+|.+-..|=.+.|.||..+|.-
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999999999999999999999999887753
No 228
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=29.61 E-value=1.5e+02 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
|...+++=..||+++..||.-+|.++
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~E 29 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKE 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555443
No 229
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=29.53 E-value=2.1e+02 Score=22.43 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 39 NNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKK--------SGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 39 ~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k--------y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
.++-.|.+++-.++...+..++..-.....-+..|-+. |...-++-.-+|.|+++...|.-+-.-.|.|+++
T Consensus 12 IdWa~lae~v~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~v~~~~~ky~~~ 91 (172)
T KOG3366|consen 12 IDWAKLAERVPPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKPVPVDEDKYLKE 91 (172)
T ss_pred ccHHHHHHHcCHHHHHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 34445555666666666666655555555555444332 3333366667777777777777555566677766
Q ss_pred HHHHHHh
Q 033198 111 LESKMQS 117 (125)
Q Consensus 111 LE~K~k~ 117 (125)
..+.++.
T Consensus 92 vda~~k~ 98 (172)
T KOG3366|consen 92 VDAEEKA 98 (172)
T ss_pred hhHHHHH
Confidence 6666553
No 230
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.40 E-value=2.6e+02 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
.+...|+++=+++.+||+.+.++
T Consensus 122 ~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 122 QHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554443
No 231
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.18 E-value=1.9e+02 Score=19.77 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~L 104 (125)
+.+|+.+....+||.+...+
T Consensus 53 ~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 44455555555555554433
No 232
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.00 E-value=3e+02 Score=21.92 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 66 l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
|...+.+|+..+.+++..++.=+.+++.+..|=..++.|.+=.+.|=+
T Consensus 41 L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 41 LAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444433333
No 233
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=28.93 E-value=3.3e+02 Score=22.36 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=42.3
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 56 YKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 56 Y~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
+........++..++..+...+.+.+.+-.++.++.....+++..-.+-..+.+.|-.+
T Consensus 51 ~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 51 VAAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HhhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44455666777777777777777777777777777777777777777777777666443
No 234
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.65 E-value=6.1e+02 Score=25.44 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhc
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE---SKMQSLYQH 121 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE---~K~k~l~~~ 121 (125)
-...|......+.-|+.-+..|+.....|..-++.+-.-.....-||+..+.+|.|...+- .+|+++.|+
T Consensus 521 ~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrh 593 (1195)
T KOG4643|consen 521 CDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666555555545566677777777776665554 344455544
No 235
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=28.35 E-value=1.9e+02 Score=22.90 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198 66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQV 94 (125)
Q Consensus 66 l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V 94 (125)
+......|+++-..|++.++.|++.|+++
T Consensus 187 ~~~q~~~le~~a~~lC~~l~~L~~~E~~L 215 (229)
T PF11101_consen 187 MEAQAQELEQKAQALCDSLQQLDQQEQQL 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666655
No 236
>PRK10337 sensor protein QseC; Provisional
Probab=28.24 E-value=3.3e+02 Score=22.23 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
..+..|...+..+..++..|-.|++
T Consensus 274 ~~l~~~~~~~~~~~~l~~~ll~~~r 298 (449)
T PRK10337 274 KALLQLHAGIDRATRLVDQLLTLSR 298 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777776664
No 237
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=28.15 E-value=1.3e+02 Score=20.68 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 033198 54 EEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 54 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~ 95 (125)
+.|..|+.+-.+=...++ +.-.+...||..+|.+||.+.+
T Consensus 35 g~~vnmrsIQEnGe~Kie--~kiee~v~plreki~dle~Sft 74 (78)
T PF11803_consen 35 GNYVNMRSIQENGELKIE--QKIEEAVAPLREKIRDLEKSFT 74 (78)
T ss_pred HhhcCHHHHHhccchhHH--HHHHHHHhHHHHHHHHHHHHHh
Confidence 456666555554444444 2223346677777777766554
No 238
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.15 E-value=3.4e+02 Score=23.44 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
+...++..-+.+++.+..+....+. .+....++..|-+++..||+....++
T Consensus 45 ~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 45 EIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555443333333 55666666677777777766555444
No 239
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=27.93 E-value=1.4e+02 Score=21.65 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
-.-+++.+|++++.+|...-..|+.+...++.
T Consensus 82 ~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 82 ALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888888888777766654
No 240
>PRK12765 flagellar capping protein; Provisional
Probab=27.93 E-value=4.7e+02 Score=23.86 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 62 VAAGLRVFVEQLKKKSGSFDEYVQQIDS-IEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 62 ~a~~l~~~~~~Ln~ky~~l~~yl~qID~-Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
...++...+++|..+++.++.-+...-. .-.|-..|+.++.+|..-+..|..-|..+-+.
T Consensus 533 ~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~~~~ 593 (595)
T PRK12765 533 YDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAANNS 593 (595)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 3445555555555555555544443322 23345556666666666666666666555443
No 241
>PRK10869 recombination and repair protein; Provisional
Probab=27.80 E-value=4.5e+02 Score=23.56 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.6
Q ss_pred HHHHHh
Q 033198 73 LKKKSG 78 (125)
Q Consensus 73 Ln~ky~ 78 (125)
|+.||.
T Consensus 311 L~rKyg 316 (553)
T PRK10869 311 LARKHH 316 (553)
T ss_pred HHHHhC
Confidence 344444
No 242
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=27.79 E-value=2.9e+02 Score=21.42 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHh
Q 033198 78 GSFDEYVQQIDSIEQQVTQFE----------AVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE----------~~a~~LD~ysk~LE~K~k~ 117 (125)
..|+.-.++|+.|++++-.|+ +.|..+|.-.+++..++|+
T Consensus 111 ~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 111 PTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445557777777666654 3444444444444444443
No 243
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=27.64 E-value=5e+02 Score=24.04 Aligned_cols=89 Identities=16% Similarity=0.335 Sum_probs=57.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHH------------------HHHHHHHhhhHHHHHHHHH
Q 033198 28 SAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFV------------------EQLKKKSGSFDEYVQQIDS 89 (125)
Q Consensus 28 s~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~------------------~~Ln~ky~~l~~yl~qID~ 89 (125)
..=|.-++..+.+=+.-..+|...=-.+-.........|.... .+++.+-++++.||--+..
T Consensus 461 ~~SIdkDi~tAnDGl~YynKM~elYK~~L~aVn~~Ik~ie~~~~~e~~kK~~~~~~~~~~~~q~~~~k~E~~KYLPFLns 540 (574)
T PF07462_consen 461 GASIDKDIATANDGLAYYNKMGELYKKHLDAVNEQIKEIEDEINDEEEKKIPSEPPKTAPKNQLNAKKEELEKYLPFLNS 540 (574)
T ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccCCcccccchhhhhHHHHHHhhhhhHHHH
Confidence 3334555666666666666665544444444444444333322 3467777888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|.. .-|.+|++.+.|+..|..++.+-+
T Consensus 541 iqk---~YesLv~kv~~yt~nLk~~inNcq 567 (574)
T PF07462_consen 541 IQK---EYESLVNKVNTYTENLKKFINNCQ 567 (574)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 775 467889999999999999887654
No 244
>PHA03386 P10 fibrous body protein; Provisional
Probab=27.33 E-value=2.3e+02 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
+..+|..++.-...||..+..
T Consensus 24 LQ~qV~dv~~n~~~LDa~~~q 44 (94)
T PHA03386 24 LQTQLNGLEEDSQPLDGLPAQ 44 (94)
T ss_pred HHHHHHHHHhcchhhhhHHHH
Confidence 333333333333334443333
No 245
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=27.02 E-value=1.4e+02 Score=17.40 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSFDE----YVQQIDSIEQQVTQ 96 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l~~----yl~qID~Ie~~V~~ 96 (125)
...|...+..|+..+..+.. .-..||.|+..|..
T Consensus 8 l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 8 LEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554433 33456666555543
No 246
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=26.90 E-value=3.6e+02 Score=22.25 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhH-H-HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 033198 19 SLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGL-R-VFVEQLKKKSGSFDEYVQQIDSIEQQVTQ 96 (125)
Q Consensus 19 l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l-~-~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~ 96 (125)
..-..|..+.+|+.. -|.++..++.....-+.-++..++.+ . .....|..+-..- .++.||-||=-..+-
T Consensus 33 ~vp~~c~~ir~fi~~-------~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~-~~l~qi~Qi~iNl~~ 104 (311)
T PF04091_consen 33 MVPMCCRQIRSFIEK-------CYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSS-LNLSQIVQIVINLEY 104 (311)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHH
Confidence 334445555555542 33444444443333333333334433 1 2445555555555 689999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 97 FEAVISMLDKYVAVLE 112 (125)
Q Consensus 97 LE~~a~~LD~ysk~LE 112 (125)
||.+...|+.|...+-
T Consensus 105 le~Ac~~le~~l~~~~ 120 (311)
T PF04091_consen 105 LEKACKELEEFLSSLR 120 (311)
T ss_dssp HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999887766
No 247
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=26.84 E-value=74 Score=18.85 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033198 100 VISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 100 ~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+|.+|=.-+.-||.|+..+++
T Consensus 15 AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 15 AVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHhccHHHHHHHHhh
Confidence 456666666777777776654
No 248
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=2e+02 Score=19.30 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=28.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGSF-DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~l-~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
.|.+.++-+-.-+.+...|+..+ ......||+.-..+..||..+.-|
T Consensus 13 Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDL 60 (73)
T KOG4117|consen 13 NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADL 60 (73)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34444555555566666666653 344566677777777777766544
No 249
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.60 E-value=6.8e+02 Score=25.88 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh
Q 033198 1 MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~d~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l 80 (125)
.||.+.+.+......+. -.++-++++..+++.-++++..--.=-|.+-+.+..-...-.+....|..---......-.|
T Consensus 1648 ~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L 1726 (1758)
T KOG0994|consen 1648 TAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQAL 1726 (1758)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~ 103 (125)
..+-.+|+.++..|..+-.-++.
T Consensus 1727 ~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
No 250
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.48 E-value=3.5e+02 Score=21.94 Aligned_cols=31 Identities=13% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 74 KKKSGSFDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 74 n~ky~~l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
...-.+|..--..||.++..++.++.++.+|
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl 80 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRI 80 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3333444444444444444444444444433
No 251
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.44 E-value=5.7e+02 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 94 VTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K 114 (125)
-..++.+|..+|.|+...|+-
T Consensus 435 reqlk~lV~~~~k~~~e~e~s 455 (716)
T KOG4593|consen 435 REQLKGLVQKVDKHSLEMEAS 455 (716)
T ss_pred HHHHHHHHHHHHHhhHhhhhh
Confidence 334444444444444444443
No 252
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.42 E-value=3.2e+02 Score=21.50 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 65 GLRVFVEQLKKKSGSFDEYVQQIDSI-EQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~l~~yl~qID~I-e~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
+++.-+..|++...+++.-+..|++- ++...+|.+.+...+.....|+.+...|..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQ 147 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 253
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=26.37 E-value=4.2e+02 Score=24.60 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=7.7
Q ss_pred HHhHHHHHHHhhHHHH
Q 033198 47 KMNLRVAEEYKGFGDV 62 (125)
Q Consensus 47 ~mN~~~s~kY~~m~~~ 62 (125)
+++.+...++.++...
T Consensus 550 KL~~AL~~np~~V~~l 565 (661)
T PRK06664 550 KLDEVLKENPDSVREL 565 (661)
T ss_pred HHHHHHHhCHHHHHHH
Confidence 3444555555554443
No 254
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=26.35 E-value=2.1e+02 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEA-VISMLDKYVAV 110 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~-~a~~LD~ysk~ 110 (125)
.-++++++||++|..|=+ +...|..+++.
T Consensus 3 eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~ 32 (117)
T PF10280_consen 3 ERLQQLNEIDKKIVSLLQHAGQAIQELSNP 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457788888888776544 44456777754
No 255
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.24 E-value=2.3e+02 Score=19.72 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=25.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 76 KSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 76 ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
....++.|-++|+.|..++..|......++.-...|
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888888888887777776665544
No 256
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.24 E-value=2.3e+02 Score=22.68 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
|..-.+.|+.+|.++.+|=..+..|...-+.|=
T Consensus 24 F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela 56 (234)
T cd07664 24 FEEKQQQFENLDQQLRKLHASVESLVCHRKELS 56 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677778888888777777777666654
No 257
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=26.20 E-value=1.6e+02 Score=21.99 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
.+..|.++..+...|..-+++|++.-..=+.-.+-=..|=..+..||.+|+
T Consensus 62 g~~~y~~v~Eis~~L~~vieELdqi~~~~~~~~d~K~kiL~dL~HLE~Vv~ 112 (125)
T PF11944_consen 62 GSQQYKEVSEISPNLRYVIEELDQITGREQAEVDLKQKILDDLRHLEKVVN 112 (125)
T ss_pred CCccceehhhccHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999987766433333333344455667777653
No 258
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.11 E-value=3.1e+02 Score=24.96 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 65 GLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+-..-..+++-+-+....|...|+.|.+.|++|- =..+|.-.|-+|.|=|.++
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--k~~ad~~~KI~~~k~r~~~ 387 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ--KHHADAVAKIEEAKNRHVE 387 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHH
Confidence 4455566777788889999999999999999998 6788999988887766543
No 259
>PRK06034 hypothetical protein; Provisional
Probab=26.08 E-value=69 Score=26.69 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..|....++||.||.++-+|
T Consensus 9 ~~L~eLR~eID~ID~eLl~L 28 (279)
T PRK06034 9 PSLAELRWEIDAIDEELHQL 28 (279)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998766
No 260
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.01 E-value=4.5e+02 Score=23.00 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=40.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 27 VSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 27 vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
--.-++++..+.....++|+.+-........+ ++......+.+..+-+.-|-+++-.+.....+++....+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
T TIGR02231 86 ELRDLEDRGDALKALAKFLEDIREGLTEPIKD------SAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEK 159 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccc------ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888875432211110 000000111122223334444444444444555555555555
Q ss_pred HHHHHHHHHHhhh
Q 033198 107 YVAVLESKMQSLY 119 (125)
Q Consensus 107 ysk~LE~K~k~l~ 119 (125)
=...|+.++..+.
T Consensus 160 ~l~~l~~~l~~l~ 172 (525)
T TIGR02231 160 QLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHhhc
Confidence 5555555555543
No 261
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.84 E-value=7.4e+02 Score=25.46 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 033198 51 RVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS 89 (125)
Q Consensus 51 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~ 89 (125)
.+..+...+.++...|...++.|+...+....|+.....
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888888777777665443
No 262
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.66 E-value=2.3e+02 Score=19.43 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
..+..+-+++..+...+.+++.+...|+...
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 13 QQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455556666666666666666666554
No 263
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=25.56 E-value=2.6e+02 Score=23.44 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
|+.|-+.-.++++.|.+|.+++..+|..-|
T Consensus 64 L~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk 93 (313)
T PF05461_consen 64 LKEFPQLKEELEEHIRKLRALADEIDKVHK 93 (313)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778889999999999998755
No 264
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=25.56 E-value=84 Score=21.42 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 033198 91 EQQVTQFEA 99 (125)
Q Consensus 91 e~~V~~LE~ 99 (125)
|+.+..+|.
T Consensus 34 e~sl~~~er 42 (81)
T COG1722 34 EEALKEFER 42 (81)
T ss_pred HHHHHHHHH
Confidence 333334433
No 265
>PTZ00464 SNF-7-like protein; Provisional
Probab=25.51 E-value=3.4e+02 Score=21.47 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=27.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh
Q 033198 28 SAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF 80 (125)
Q Consensus 28 s~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l 80 (125)
-++.+.+++-+.....-|+.+...... =..-..+...+....+.|+..+..+
T Consensus 70 KK~~E~ql~~l~~q~~nleq~~~~ie~-a~~~~~vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 70 KRMYQNQQDMMMQQQFNMDQLQFTTES-VKDTKVQVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555555555555555433222 1222455566666666666666665
No 266
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.40 E-value=60 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+|+.+..+|..+.-+-..-++|.
T Consensus 29 Leesl~~ye~G~~L~k~c~~~L~ 51 (75)
T PRK14064 29 LEDSLDMYQKGIELTKLCQDKLQ 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665544444444443
No 267
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.39 E-value=1.8e+02 Score=18.12 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=13.7
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhh
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSF 80 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l 80 (125)
++..+..-.......++.++.....|
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444
No 268
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.37 E-value=88 Score=21.11 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~ 95 (125)
++...++.+|.||++|+
T Consensus 13 d~~~i~~rLd~iEeKVE 29 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVE 29 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888887663
No 269
>PRK08724 fliD flagellar capping protein; Validated
Probab=25.36 E-value=5.8e+02 Score=24.04 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 033198 16 LAESLNDLFTSVSAMVKS 33 (125)
Q Consensus 16 L~~l~~~~f~~vs~yl~~ 33 (125)
|...+..=+..|..++.|
T Consensus 576 L~~AL~~npd~V~~LF~g 593 (673)
T PRK08724 576 LDRQLNNNFNKLEEFFGG 593 (673)
T ss_pred HHHHHHhCHHHHHHHhcC
Confidence 444444445556666654
No 270
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.26 E-value=76 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
+.|..+.++||+||.++-+|
T Consensus 3 ~~L~~lR~~ID~iD~~iv~L 22 (374)
T PRK11199 3 AELTALRDQIDEVDKQLLEL 22 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998766
No 271
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.26 E-value=2.6e+02 Score=19.96 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
.....-..|+-|+..+..||.-...|-.=.+.++.+++.+-+..
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556666777777777777777777788888888776653
No 272
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=25.00 E-value=2.9e+02 Score=20.51 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHH-----------HHHHHHHhhhHHHHHHHHHHHH
Q 033198 24 FTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFV-----------EQLKKKSGSFDEYVQQIDSIEQ 92 (125)
Q Consensus 24 f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~-----------~~Ln~ky~~l~~yl~qID~Ie~ 92 (125)
+.+...=+...++--...+.=+++.+.-+......|.+....-.... +.|+.+. +--|=..|..++.
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~ 104 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPS 104 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHh
Confidence 33333334444444444445555555555555555555444333332 2333332 2344466677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 93 QVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 93 ~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
++..|-.++..+-.--++||.++-.+.+.
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~ 133 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQDIDQQERY 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666554
No 273
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=24.92 E-value=2.6e+02 Score=19.92 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVI 101 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a 101 (125)
.|+.++..|..||+-+
T Consensus 97 ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 97 EIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 274
>smart00721 BAR BAR domain.
Probab=24.90 E-value=3e+02 Score=20.61 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhh------------HHHHHHhHHHHHHHHHHHH--
Q 033198 12 ARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKG------------FGDVAAGLRVFVEQLKKKS-- 77 (125)
Q Consensus 12 ~~d~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~------------m~~~a~~l~~~~~~Ln~ky-- 77 (125)
..+.+...+.++...+..|++. -.+.......-.++......-|.. +......+...+..+-+..
T Consensus 35 ~~~~~~~~~~kl~k~~~~y~q~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 113 (239)
T smart00721 35 RFDTTEAEIEKLQKDTKLYLQP-NPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEES 113 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3456777788888888888854 122222233333333333333322 2222222222222222110
Q ss_pred ------hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 ------GSFD----EYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 78 ------~~l~----~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.-+. -+...|.+|.+.+.+++...-..|.+-.+|+
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~ 158 (239)
T smart00721 114 LSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLK 158 (239)
T ss_pred HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122 3347788888999999999888898887766
No 275
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.87 E-value=6e+02 Score=24.08 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Q 033198 43 ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 43 ~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~ 99 (125)
++|+.==..+...+..++.....|......+..+|.. -.++...+..+..++..+|+
T Consensus 355 eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 355 EILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333466666777777777776666666666633 34444444455444444444
No 276
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=24.83 E-value=4.1e+02 Score=22.09 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 033198 89 SIEQQVTQFE 98 (125)
Q Consensus 89 ~Ie~~V~~LE 98 (125)
+++..+.+++
T Consensus 38 ~l~~~~~~~~ 47 (378)
T TIGR01554 38 ELETDVEKLK 47 (378)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 277
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.62 E-value=65 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+|+++..++..+.-+-...+.|+
T Consensus 30 Lees~~lyeeG~~L~k~C~~~L~ 52 (80)
T PRK14067 30 LEESVALYKEGLGLARACREQLA 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667766666665555554
No 278
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.48 E-value=1.7e+02 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.491 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
|+.++.+|..|...+.+|+..+.+|+.+-
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h 63 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLH 63 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555544
No 279
>smart00338 BRLZ basic region leucin zipper.
Probab=24.38 E-value=1.9e+02 Score=18.03 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=4.3
Q ss_pred hHHHHHHHh
Q 033198 49 NLRVAEEYK 57 (125)
Q Consensus 49 N~~~s~kY~ 57 (125)
|+.++.+|-
T Consensus 13 NR~aA~~~R 21 (65)
T smart00338 13 NREAARRSR 21 (65)
T ss_pred hHHHHHHHH
Confidence 444444444
No 280
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=24.27 E-value=92 Score=21.35 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~ 95 (125)
.|...++.+|+||++|+
T Consensus 16 d~~~i~~rLD~iEeKVE 32 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVE 32 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666778888887663
No 281
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.26 E-value=2.5e+02 Score=19.44 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 117 (125)
-+|.||++...|..-...|-+-.++.-..|+.
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555555555544
No 282
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.17 E-value=1.2e+02 Score=20.49 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
..+|........+++.. -...|+....+-+..++.|..||.+.
T Consensus 23 ~lHY~sk~~~~~gLs~~------d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 23 ILHYRSKWKSSQGLSEE------DEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHhcccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666666666432 13345666667777788888888775
No 283
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=24.01 E-value=1.7e+02 Score=21.01 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
++...+.+-|.+|.+||.|.+.|-
T Consensus 67 qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 67 QLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778888999999999998886
No 284
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=23.97 E-value=2.1e+02 Score=18.83 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.8
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 033198 56 YKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV--TQFEAVISMLDKYVAV 110 (125)
Q Consensus 56 Y~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V--~~LE~~a~~LD~ysk~ 110 (125)
|..+..+++.|+..-..|- ..|.-.-..|+.|+..- ...|++...|..|..+
T Consensus 4 ~~~l~~ia~~lG~dW~~LA---r~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r 57 (84)
T cd08317 4 DIRLADISNLLGSDWPQLA---RELGVSETDIDLIKAENPNSLAQQAQAMLKLWLER 57 (84)
T ss_pred cchHHHHHHHHhhHHHHHH---HHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 4567778888876666665 34443446788888764 3469999999999875
No 285
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.92 E-value=6.9e+02 Score=24.44 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~LE~~a~~LD~ 106 (125)
+.+++........-+++--.....+...+......+...+..+..+..++...+. .+..++..+..++.-...|+.
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~ 891 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhc
Q 033198 107 YVAVLESKMQSLYQH 121 (125)
Q Consensus 107 ysk~LE~K~k~l~~~ 121 (125)
--..++.++..+...
T Consensus 892 ~l~~~~~~~~~~~~~ 906 (1163)
T COG1196 892 ELRELESELAELKEE 906 (1163)
T ss_pred HHHHHHHHHHHHHHH
No 286
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.87 E-value=1.8e+02 Score=23.70 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 92 QQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 92 ~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
+.|--+|++...++...++||.|++.+++-
T Consensus 48 Q~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 48 QRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345668899999999999999999999884
No 287
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.78 E-value=3.7e+02 Score=21.28 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+.+..++.+...+++.+++.++..++....+.+...+.|.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444444444444444444444443
No 288
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.73 E-value=5e+02 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 033198 10 TEARDELAESLNDLFTSVSAMVKS 33 (125)
Q Consensus 10 ~~~~d~L~~l~~~~f~~vs~yl~~ 33 (125)
++..-.|++=++.....+...|+.
T Consensus 400 A~EVR~LA~~s~~at~~I~~~i~~ 423 (554)
T PRK15041 400 AGEVRNLAQRSAQAAREIKSLIED 423 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343346666666666677777754
No 289
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.30 E-value=2.7e+02 Score=19.55 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.+..+++++..|++-...|...-..|+.++.
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544
No 290
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.14 E-value=3.5e+02 Score=20.68 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 033198 44 LLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKK 76 (125)
Q Consensus 44 LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k 76 (125)
-|++.|.+...++.++.....+++.....+-..
T Consensus 23 ~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~ 55 (187)
T cd07629 23 GMEKVNRRITKRLGDLAEDMADLGGRFNAFSLE 55 (187)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478889988888877777776666666655544
No 291
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.91 E-value=3.3e+02 Score=20.32 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
.+..|..-|..++..+..+..-+.+|..--+.+|++...|.
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777776654
No 292
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=22.90 E-value=2e+02 Score=17.76 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~y 107 (125)
+.+..-+..|...+.+|.+|
T Consensus 71 ~~~~~~~~~l~~~l~~l~~~ 90 (90)
T PF01627_consen 71 EELEQLLDELEAMLEQLRQW 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCc
Confidence 33444444444444444443
No 293
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.86 E-value=5.5e+02 Score=22.93 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHH----------HHhHHHHHHHHHHHHh
Q 033198 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDV----------AAGLRVFVEQLKKKSG 78 (125)
Q Consensus 30 yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~----------a~~l~~~~~~Ln~ky~ 78 (125)
++..........+.=+...|.........+.+. ..++...++.++..+.
T Consensus 307 ~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 307 YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555566655555555555 4455554544444444
No 294
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=22.76 E-value=2.3e+02 Score=18.56 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
.|+.++.+-+.|...+...-.-+++|..+
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444445555555555555555544433
No 295
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=22.74 E-value=5.1e+02 Score=24.05 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033198 95 TQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 95 ~~LE~~a~~LD~ysk~LE 112 (125)
+.||.++.+|.+-+..|.
T Consensus 635 taME~~msqmnsqss~L~ 652 (661)
T PRK06664 635 LTMDQTVKKMKEQSNYLK 652 (661)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 296
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.71 E-value=3e+02 Score=19.76 Aligned_cols=103 Identities=25% Similarity=0.289 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHH----HHHHHHHHHHhhhHHHHH
Q 033198 12 ARDELAESLNDLFTSVSAMVK--SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLR----VFVEQLKKKSGSFDEYVQ 85 (125)
Q Consensus 12 ~~d~L~~l~~~~f~~vs~yl~--~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~----~~~~~Ln~ky~~l~~yl~ 85 (125)
+.++|.++.++= .++..||. .++.....+..-+.+=|...+.....+......++ .....++....++....+
T Consensus 5 S~~eL~~Ll~d~-~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 5 STEELQELLSDE-EKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp TTHHHHHHHHH--HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777654 56777877 44666666666666677777776644433333333 333333333333333344
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIE------QQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 86 qID~Ie------~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
+.+.+- .=...|...+.+.|+=|..|..+|
T Consensus 84 ~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~f 119 (150)
T PF07200_consen 84 QQDELSSNYSPDALLARLQAAASEAEEESEELAEEF 119 (150)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 234456666666666666664443
No 297
>PRK11415 hypothetical protein; Provisional
Probab=22.56 E-value=1.9e+02 Score=19.08 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 033198 68 VFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAV 100 (125)
Q Consensus 68 ~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~ 100 (125)
.-+..|++....|.....+=..+|.+|..+|.-
T Consensus 7 d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~ 39 (74)
T PRK11415 7 DLISRLKNENPRFMSLFDKHNKLDHEIARKEGS 39 (74)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346778888888888888889999999998884
No 298
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=22.54 E-value=4.5e+02 Score=21.84 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKK 75 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ 75 (125)
...+.++.+.+..+......+..
T Consensus 191 ~~~~~~~~~ave~ia~~~~~~~~ 213 (276)
T PF05929_consen 191 DEQFADLQQAVEAIAEQQQELEE 213 (276)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 299
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=22.52 E-value=5.6e+02 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
|.=|+..|..|+.++-+++.-++.+...
T Consensus 190 i~YL~~Fv~~L~~~~~~I~~~l~~l~~~ 217 (494)
T TIGR02677 190 IAYLQDFIVRLVDRSEQIAQLLRVLAES 217 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 5667888888888888888888877543
No 300
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.46 E-value=2.9e+02 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
...+++|+.+.......+.+||...++|+.=+....+.
T Consensus 28 r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~ 65 (236)
T PF12269_consen 28 RKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQF 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777777777777666555443
No 301
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.46 E-value=1.5e+02 Score=25.95 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHHHhHH-HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 033198 45 LEKMNLR-VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ 93 (125)
Q Consensus 45 Le~mN~~-~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~ 93 (125)
|+.|++. .-+||.-+++.+-+|...++.|-.-+..|+|.++-|.+.-+.
T Consensus 55 Ie~~~~~s~qeKFl~IR~KlleL~~~lQ~lS~df~~LqPLF~Ti~eyse~ 104 (379)
T PF11593_consen 55 IEEMNNKSPQEKFLLIRSKLLELYNKLQELSSDFQKLQPLFDTIPEYSEK 104 (379)
T ss_pred hhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHhhhHHHhcc
Confidence 3666554 457999999999999999999999999999999988765544
No 302
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=22.40 E-value=2.8e+02 Score=20.57 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 65 GLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
....|++.+-..-++ |..+-..|+.||..+.-||+-..-+
T Consensus 7 ~tv~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 7 HTVQFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444333333 5555566777777777777655443
No 303
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.37 E-value=77 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+|+.+..++.-+.-+....+.|.
T Consensus 28 Leesl~lyeeG~~L~k~C~~~L~ 50 (76)
T PRK14063 28 LEEAISYFKEGMELSKLCDEKLK 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777776666665555554
No 304
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=22.36 E-value=9.9e+02 Score=26.48 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhH-HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHH
Q 033198 20 LNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGF-GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ-VTQF 97 (125)
Q Consensus 20 ~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m-~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~-V~~L 97 (125)
..+.|..|-++-.+.|......++.+.+ ..+.+=..+ .....---.++..|++-|.....+..+|++||.- =.+.
T Consensus 2303 ISk~F~nVlq~QK~kL~en~n~Lk~I~~---~i~dk~n~~l~~l~~~~~~~~n~~kEiy~~I~~~~~~l~~ie~~nn~E~ 2379 (2757)
T TIGR01612 2303 ISKEFDNIIQLQKHKLTENLNDLKEIDQ---YISDKKNIFLHALNENTNFNFNALKEIYDDIINRENKADEIENINNKEN 2379 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3568888888888866555555544433 223332222 2222223356678889999999999999999864 3456
Q ss_pred HHHHHHHHHHHHHHH
Q 033198 98 EAVISMLDKYVAVLE 112 (125)
Q Consensus 98 E~~a~~LD~ysk~LE 112 (125)
+.+.-..|..|+.++
T Consensus 2380 ~nv~~y~e~It~L~~ 2394 (2757)
T TIGR01612 2380 ENIMQYIDTITKLTE 2394 (2757)
T ss_pred HhHHHHHHHHHHHHH
Confidence 666666776666554
No 305
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.35 E-value=1.6e+02 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
++.....++-.++.+|..+..-...|+++-...|.-++.++.+.
T Consensus 107 e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~ 150 (181)
T KOG3335|consen 107 EIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAP 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCC
Confidence 34455555666666777777777777766666655555555443
No 306
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=22.21 E-value=2.5e+02 Score=18.64 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 70 VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 70 ~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
...+...+.++...-+.|.++..+.-++|-.+..|....-+++-.+.
T Consensus 22 ~~~l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQ 68 (80)
T PF11488_consen 22 QSKLESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQ 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHH
Confidence 33477777777777777777777788888777777777777765544
No 307
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.15 E-value=1.7e+02 Score=20.60 Aligned_cols=29 Identities=10% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
..++..|++++..|+.+...|+......+
T Consensus 83 ~~~~~~l~~~i~~L~~~~~~l~~~~~~~~ 111 (126)
T cd04783 83 EQKLAEVDEKIADLQRMRASLQELVSQCA 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35888899999999988888887765443
No 308
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.12 E-value=95 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
.+|.++..+||+||.++-+|
T Consensus 4 ~~L~~lR~~ID~ID~eIl~L 23 (360)
T PRK12595 4 EELEQLRKEIDEINLQLLEL 23 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999998776
No 309
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.12 E-value=3.2e+02 Score=19.90 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 117 (125)
........-+.+|...+..+...+...-.-+..+..-+..
T Consensus 156 ~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~ 195 (213)
T PF00015_consen 156 ESAEEQSESIEQINESIEEISEISEQISASSEEIAEAAEE 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444433333
No 310
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=3e+02 Score=19.97 Aligned_cols=20 Identities=35% Similarity=0.714 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~ 99 (125)
....-..||.++.+|..||.
T Consensus 85 ~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 85 MDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666554
No 311
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.86 E-value=1.7e+02 Score=21.09 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033198 83 YVQQIDSIEQQVTQFEA 99 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~ 99 (125)
|.+|..+.++.++++..
T Consensus 64 y~~Q~k~Ye~a~~~~~~ 80 (104)
T PF11460_consen 64 YMQQRKDYEEAVDQLTN 80 (104)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 66666666666655543
No 312
>PRK01156 chromosome segregation protein; Provisional
Probab=21.86 E-value=6.6e+02 Score=23.42 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHH----HHHHH
Q 033198 14 DELAESLNDLFTSVSAMVK--SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE----YVQQI 87 (125)
Q Consensus 14 d~L~~l~~~~f~~vs~yl~--~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~----yl~qI 87 (125)
+++..-+..+...+..+-. +++.....+++.++.==......|..+......+...+..++.+-+.+.. +-..|
T Consensus 639 ~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 639 QENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQV---TQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 88 D~Ie~~V---~~LE~~a~~LD~ysk~LE 112 (125)
..+.... ..++.++..|+.|.+.|+
T Consensus 719 ~~~~~~~~~l~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 719 NDINETLESMKKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 313
>PHA03046 Hypothetical protein; Provisional
Probab=21.70 E-value=1.9e+02 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~~ 123 (125)
+|-+|=-.+..||+.....=..++.+...++.|+++-.
T Consensus 85 ~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~E 122 (142)
T PHA03046 85 DIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTE 122 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667888999998888889999999999988753
No 314
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.38 E-value=3e+02 Score=19.23 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
...+-..|+.+++++.+|+.....+-.....++..+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777776666666666666555443
No 315
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.29 E-value=4.5e+02 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033198 15 ELAESLNDLFTSVSAMVK 32 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~ 32 (125)
.|++-.+..-..+..++.
T Consensus 282 ~LA~~s~~st~~I~~~i~ 299 (408)
T COG0840 282 KLAERSADSAKEIGLLIE 299 (408)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555566666664
No 316
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=21.28 E-value=2.1e+02 Score=19.51 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
-..+++.+|++++..|+.....|+.+
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 75 ILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888777664
No 317
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.21 E-value=2.8e+02 Score=18.86 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
.-+-..|+.+++++..++.....+......++..+..++++
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445677777777777777777777777777777766653
No 318
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.21 E-value=2.8e+02 Score=18.96 Aligned_cols=26 Identities=8% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
.-+++..|++++..|+.+...|+...
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 80 LREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888777654
No 319
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=4.5e+02 Score=21.19 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQ----FEAVISMLDKYV 108 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~----LE~~a~~LD~ys 108 (125)
+.+.|.....-|=.++.+-+.+|+.+.+-+++|.+|-..+.. ||++|-.||..-
T Consensus 121 r~K~v~~s~~tLf~~~~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~lN 178 (217)
T KOG4515|consen 121 RCKSVEASMITLFEETRAHQKQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETLN 178 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555566666677778888999999999999999888764 667776666543
No 320
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.99 E-value=2.4e+02 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.-.++..|+.++.+|..+...|+....
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVDLRG 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888877654
No 321
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.68 E-value=7.1e+02 Score=23.37 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHhHHHHHHHhh-HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 38 TNNTLELLEKMNLRVAEEYKG-FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 38 t~~d~~LLe~mN~~~s~kY~~-m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
+.+=+.||-+-=+.-..+|.. ....-..|...+..|+.+. +..++.|+++.+....|...+.+|..
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~---e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQK---EQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666744 4444555666666665443 35556666666666666444444443
No 322
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.62 E-value=6.3e+02 Score=22.78 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=9.9
Q ss_pred HHhhHHHHHHhHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLK 74 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln 74 (125)
+..+....++.+++.+..|.
T Consensus 70 ALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555553
No 323
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.60 E-value=4.6e+02 Score=21.15 Aligned_cols=69 Identities=10% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHhhhhhhhhhHHHHHH-HHhHHHHHHHhhHHHHHHhHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHH
Q 033198 27 VSAMVKSELQGTNNTLELLE-KMNLRVAEEYKGFGDVAAGLRVFVEQLKKK--SGSFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 27 vs~yl~~El~~t~~d~~LLe-~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k--y~~l~~yl~qID~Ie~~V~ 95 (125)
++.++-.+.......+.-+. +|+................+...+.....+ ...+..+-+++|.+..++.
T Consensus 137 aAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 137 AAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333332222 344444444444444444444443333321 1334445555555554443
No 324
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.59 E-value=5.7e+02 Score=22.27 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 64 AGLRVFVEQLKKKSGSFDEYVQQI-DSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 64 ~~l~~~~~~Ln~ky~~l~~yl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
.++...+.+++.+.+.++..+++. +..-.|-+.||.++.+|..-...|..-
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433332 334455566666666666665555543
No 325
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=20.55 E-value=4e+02 Score=20.38 Aligned_cols=53 Identities=9% Similarity=0.267 Sum_probs=43.2
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 53 AEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 53 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
...|.++...|..|.+-+..+=.....=.-||+-|.+|-..+-+|=++|+.+=
T Consensus 88 ~~~~~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdAvn~v~ 140 (154)
T PF06840_consen 88 EPEFQELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDAVNEVF 140 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888877777778899999999999999988887753
No 326
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=20.52 E-value=1.9e+02 Score=20.03 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.+..+.-|+.||..++.++.. |.|+.
T Consensus 11 ll~RL~RIeGQv~gI~~Miee-~~~C~ 36 (90)
T PRK15039 11 LKARASKIQGQVVALKKMLDE-PHECA 36 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHH
Confidence 444555555555555555533 34443
No 327
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.46 E-value=87 Score=21.06 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+|+.+..+|..+.-+-...+.|+
T Consensus 29 Leesl~lyeeG~~L~k~C~~~L~ 51 (76)
T PRK14068 29 LEESLDLYQRGMKLSAACDTTLK 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655555555554
No 328
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=20.40 E-value=2.2e+02 Score=21.27 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 91 EQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 91 e~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.+.+..|...|+.|+.|..++=-.+..+++
T Consensus 64 ~~ll~eL~~~asqL~~~~~~~~e~l~~le~ 93 (127)
T PF14591_consen 64 LQLLDELKSYASQLQEHYFRVRELLEDLER 93 (127)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777666555555554
No 329
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.34 E-value=8.9e+02 Score=24.37 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKK--SGSFDEYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 30 yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k--y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
-++.|+......+..|++- +.||.+|++-..-.-..+.-+..+ ..++...+.-+..|.+.|.++++-+...+.-
T Consensus 688 ~~q~el~~le~eL~~le~~----~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~ 763 (1174)
T KOG0933|consen 688 AIQKELEALERELKSLEAQ----SQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERA 763 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777754 445555554443332222222211 2334444555555555566555555555555
Q ss_pred HHHHHHHHHhhh
Q 033198 108 VAVLESKMQSLY 119 (125)
Q Consensus 108 sk~LE~K~k~l~ 119 (125)
.+.-+.+++.++
T Consensus 764 ~k~~~~~i~~lE 775 (1174)
T KOG0933|consen 764 LKKCEDKISTLE 775 (1174)
T ss_pred HHHHHHHHHHHH
Confidence 544444444443
No 330
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.32 E-value=88 Score=20.96 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhh
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLE---SKMQSL 118 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE---~K~k~l 118 (125)
+|+++..+|..+.-+-...+.|+ .|+..|
T Consensus 27 Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 27 LDDSLKAFEEGVKHAAFCSKKLDEAERRVEVL 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777776665555555554 344444
No 331
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.25 E-value=3.1e+02 Score=18.98 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
.-.-+++.+|++++..|..+-..|+.+..
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 82 ALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888877776643
No 332
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=20.21 E-value=3.4e+02 Score=19.51 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=9.4
Q ss_pred HHHHHHH-HHHHHHHH
Q 033198 99 AVISMLD-KYVAVLES 113 (125)
Q Consensus 99 ~~a~~LD-~ysk~LE~ 113 (125)
..+..|| .|+++|..
T Consensus 31 ~~la~ld~k~tkEL~~ 46 (125)
T PF03245_consen 31 QALAALDAKYTKELAD 46 (125)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555666 67777764
No 333
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=4.6e+02 Score=21.04 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=44.7
Q ss_pred HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHH------HHHHhHHHHHHHHHHHHhhhHHHHH--------------HHHH
Q 033198 30 MVKSELQGTNNTLELLEKMNLRVAEEYKGFG------DVAAGLRVFVEQLKKKSGSFDEYVQ--------------QIDS 89 (125)
Q Consensus 30 yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~------~~a~~l~~~~~~Ln~ky~~l~~yl~--------------qID~ 89 (125)
+|+|+++....=..||..+---.+.-..-+- .+...++.....+...-..++.|+- .|-.
T Consensus 97 ~veGD~q~~q~l~~Ll~~~e~D~ae~Lsr~~Gdv~A~~~~~~l~~~~~~l~~~~~~~q~~~Ae~iTEE~r~~v~~~ela~ 176 (204)
T COG3165 97 EVEGDIQLAQNLVALLGSLEPDPAELLSRYFGDVAAQSVVRALRSGSRFLKHGLKQLQRNLAEAITEEWRMAVGPLELAD 176 (204)
T ss_pred eecchHHHHHHHHHHHHhcCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCChHHHHH
Confidence 4566666666666666655443333222211 1222333333333333333333332 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
.=++|..++..|..|++..-+||.|.
T Consensus 177 f~~evd~lr~~~~rL~~RL~rLe~k~ 202 (204)
T COG3165 177 FAEEVDALRDAVERLEARLERLERKA 202 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677777777777777777777764
No 334
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.15 E-value=1.1e+02 Score=26.29 Aligned_cols=20 Identities=5% Similarity=0.278 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
+.|.++.++||+||.++-+|
T Consensus 5 ~~L~~lR~~ID~ID~~ii~L 24 (386)
T PRK10622 5 NPLLALREKISALDEKLLAL 24 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998665
No 335
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=5e+02 Score=21.40 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHhhHHHHHHhHHHHHHH
Q 033198 44 LLEKMNLRVAEEYKGFGDVAAGLRVFVEQ 72 (125)
Q Consensus 44 LLe~mN~~~s~kY~~m~~~a~~l~~~~~~ 72 (125)
.|.+.|+..-.++..+.+...++.+++.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333
No 336
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.10 E-value=5.4e+02 Score=21.73 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 61 DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.++=.|-.=+..|+..-.....+.+.|..||...+.|...+...+.-...++.+|+
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666666666677777777777777777766666666666666655
Done!