Query 033198
Match_columns 125
No_of_seqs 75 out of 77
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2avr_X Adhesion A; antiparalle 91.4 2.9 9.8E-05 29.8 10.7 86 31-119 7-95 (119)
2 1m1j_B Fibrinogen beta chain; 88.7 11 0.00036 32.3 15.3 68 52-119 126-195 (464)
3 2ieq_A S glycoprotein, spike g 88.6 1.5 5E-05 30.9 6.4 63 51-113 26-104 (109)
4 3etw_A Adhesin A; antiparallel 84.9 8.4 0.00029 27.3 12.6 84 31-117 7-100 (119)
5 4dac_A Computationally designe 83.6 1.2 4.2E-05 23.8 3.0 19 101-119 3-21 (28)
6 2l5g_B Putative uncharacterize 83.5 4 0.00014 24.1 5.5 33 81-113 5-37 (42)
7 2dfs_A Myosin-5A; myosin-V, in 82.3 26 0.0009 32.6 13.3 74 39-112 969-1043(1080)
8 2oqq_A Transcription factor HY 80.6 3.1 0.00011 24.6 4.2 27 94-120 5-31 (42)
9 3ci9_A Heat shock factor-bindi 80.0 3.6 0.00012 24.8 4.6 42 60-101 5-47 (48)
10 4gif_A Polycystic kidney disea 76.5 7 0.00024 23.4 5.0 34 77-113 6-39 (45)
11 2akf_A Coronin-1A; coiled coil 75.0 4.7 0.00016 22.2 3.7 28 89-116 3-30 (32)
12 2v66_B Nuclear distribution pr 73.0 21 0.00072 24.9 10.3 67 55-121 4-71 (111)
13 3mq9_A Bone marrow stromal ant 71.7 38 0.0013 27.4 14.8 11 25-35 359-369 (471)
14 2no2_A HIP-I, huntingtin-inter 71.4 22 0.00074 24.4 11.0 68 41-118 3-70 (107)
15 3hrn_A Transient receptor pote 71.1 13 0.00043 23.8 5.6 33 77-112 5-37 (64)
16 2dfs_A Myosin-5A; myosin-V, in 70.3 23 0.00078 33.0 9.3 57 60-116 959-1015(1080)
17 3axj_B TRAX, translin associat 68.9 37 0.0013 27.0 9.3 72 27-104 195-271 (298)
18 4dnd_A Syntaxin-10, SYN10; str 68.5 28 0.00096 24.5 9.4 15 106-120 112-126 (130)
19 2v71_A Nuclear distribution pr 68.2 36 0.0012 25.7 13.1 87 24-120 36-123 (189)
20 1deq_A Fibrinogen (alpha chain 68.0 53 0.0018 27.5 13.0 94 22-115 56-157 (390)
21 3te3_A Polycystic kidney disea 66.8 6.8 0.00023 22.7 3.3 33 77-112 6-38 (39)
22 3qb5_K Translin-associated pro 66.1 39 0.0013 26.7 8.8 42 63-104 214-260 (290)
23 1zke_A Hypothetical protein HP 65.8 2 6.9E-05 28.7 1.0 76 22-110 2-77 (83)
24 3ghg_B Fibrinogen beta chain; 65.3 65 0.0022 27.6 11.3 43 78-120 147-191 (461)
25 3zrx_A AF1503 protein, osmolar 64.8 21 0.00071 21.7 7.8 23 85-107 91-113 (115)
26 1yo7_A Regulatory protein ROP; 63.3 36 0.0012 23.9 8.0 81 23-115 7-87 (120)
27 4fla_A Regulation of nuclear P 62.6 41 0.0014 24.3 10.7 73 13-85 70-145 (152)
28 4g2k_A General control protein 62.2 22 0.00076 25.4 6.0 37 78-114 21-57 (125)
29 3ghg_C Fibrinogen gamma chain; 61.4 72 0.0025 26.8 14.7 45 77-121 90-134 (411)
30 3ghg_A Fibrinogen alpha chain; 60.8 86 0.003 27.5 12.8 22 93-114 132-153 (562)
31 3oja_B Anopheles plasmodium-re 60.6 70 0.0024 26.4 10.4 18 85-102 544-561 (597)
32 2yko_A LINE-1 ORF1P; RNA-bindi 59.5 25 0.00087 27.5 6.4 36 85-120 13-48 (233)
33 1ez3_A Syntaxin-1A; three heli 59.4 21 0.00073 23.8 5.4 63 55-120 13-75 (127)
34 3zx6_A HAMP, methyl-accepting 57.6 68 0.0023 25.2 14.1 26 91-116 275-300 (341)
35 1m1j_C Fibrinogen gamma chain; 56.7 86 0.0029 26.1 13.7 33 87-119 100-132 (409)
36 3a7p_A Autophagy protein 16; c 56.7 56 0.0019 24.0 11.2 96 13-111 37-137 (152)
37 3swy_A Cyclic nucleotide-gated 56.6 29 0.00098 20.6 6.2 21 59-79 3-23 (46)
38 3efg_A Protein SLYX homolog; x 53.4 40 0.0014 21.8 5.7 34 86-119 29-62 (78)
39 2v71_A Nuclear distribution pr 53.0 71 0.0024 24.1 13.5 92 25-116 41-133 (189)
40 2p22_C Protein SRN2; endosome, 53.0 69 0.0024 23.9 13.0 104 13-116 40-152 (192)
41 3kqg_A Langerin, C-type lectin 52.3 27 0.00094 24.2 5.2 38 64-101 2-39 (182)
42 3axj_A GM27569P, translin; tra 51.9 27 0.00091 27.1 5.4 41 64-104 183-227 (249)
43 3t98_B Nucleoporin NUP58/NUP45 51.5 51 0.0018 22.0 7.0 29 70-98 10-39 (93)
44 3swy_A Cyclic nucleotide-gated 50.1 38 0.0013 20.1 5.0 28 89-116 2-29 (46)
45 2ve7_C Kinetochore protein NUF 49.9 7.5 0.00026 30.3 2.0 59 61-119 145-203 (250)
46 2d8d_A Aroag, phospho-2-dehydr 49.5 14 0.00047 23.9 2.9 19 79-97 4-22 (90)
47 4g1a_A AQ-C16C19 peptide; heli 49.3 7.6 0.00026 21.2 1.3 29 94-122 2-30 (32)
48 3swf_A CGMP-gated cation chann 48.5 54 0.0018 21.4 7.4 22 58-79 4-25 (74)
49 1s94_A S-syntaxin; three helix 48.5 36 0.0012 24.3 5.4 62 59-120 41-106 (180)
50 1ez3_A Syntaxin-1A; three heli 48.3 57 0.0019 21.6 6.3 66 21-87 8-73 (127)
51 1j1j_A Translin; testis/brain 47.6 20 0.00069 27.6 4.1 42 63-104 179-224 (240)
52 3ret_A Salicylate biosynthesis 47.6 14 0.00047 24.6 2.8 20 78-97 8-27 (101)
53 3ezh_A Nitrate/nitrite sensor 47.5 22 0.00075 24.4 3.9 51 63-113 55-106 (125)
54 2yo3_A General control protein 47.4 1.1E+02 0.0036 24.5 8.3 27 47-73 209-235 (268)
55 1deq_A Fibrinogen (alpha chain 47.2 1.3E+02 0.0043 25.3 13.5 6 95-100 151-156 (390)
56 1gk7_A Vimentin; intermediate 46.2 30 0.001 19.6 3.7 28 73-100 8-35 (39)
57 3rmi_A Chorismate mutase prote 46.1 17 0.00059 24.9 3.2 20 78-97 12-31 (114)
58 4abm_A Charged multivesicular 45.7 19 0.00065 23.4 3.2 23 82-104 56-78 (79)
59 4ew8_A Sensor protein DIVL; si 45.6 79 0.0027 22.5 9.1 52 58-109 50-101 (268)
60 1ecm_A Endo-oxabicyclic transi 44.7 17 0.00059 24.2 2.9 19 79-97 6-24 (109)
61 1x9b_A Hypothetical membrane p 44.6 29 0.00098 21.2 3.6 25 92-116 23-48 (53)
62 2qyw_A Vesicle transport throu 44.5 66 0.0023 21.4 5.9 24 82-105 46-69 (102)
63 1gk4_A Vimentin; intermediate 44.2 61 0.0021 20.8 9.9 58 59-116 6-65 (84)
64 2c5k_T Syntaxin TLG1, T-snare 44.1 68 0.0023 21.3 9.6 41 81-121 39-90 (95)
65 1ybz_A Chorismate mutase; cons 44.0 20 0.0007 23.7 3.2 19 79-97 18-36 (91)
66 3onj_A T-snare VTI1; helix, HA 42.9 63 0.0021 21.3 5.5 21 85-105 34-54 (97)
67 2efr_A General control protein 42.9 95 0.0032 22.6 10.5 22 25-47 21-42 (155)
68 3tnu_B Keratin, type II cytosk 42.8 79 0.0027 21.7 12.4 62 55-116 51-114 (129)
69 2vkl_A RV0948C/MT0975; helical 42.6 19 0.00066 23.6 2.9 19 79-97 13-31 (90)
70 1zme_C Proline utilization tra 42.4 33 0.0011 20.4 3.8 21 86-106 45-65 (70)
71 3t97_C Nuclear pore glycoprote 42.0 43 0.0015 21.0 4.3 28 89-116 30-57 (64)
72 2oqq_A Transcription factor HY 41.8 52 0.0018 19.3 4.6 26 88-113 6-31 (42)
73 2ca5_A MXIH; transport protein 41.7 39 0.0013 22.6 4.3 31 31-61 46-76 (85)
74 1l8d_A DNA double-strand break 41.3 73 0.0025 20.8 6.2 40 80-119 66-105 (112)
75 4etp_A Kinesin-like protein KA 41.2 32 0.0011 28.3 4.6 27 90-116 29-55 (403)
76 1m1j_B Fibrinogen beta chain; 41.2 1.7E+02 0.0057 24.9 12.2 22 85-106 175-196 (464)
77 2nps_B Syntaxin 13, vesicle-as 40.8 63 0.0021 19.9 7.1 35 62-96 7-45 (71)
78 3zcc_A HAMP, osmolarity sensor 40.7 59 0.002 19.6 8.1 21 87-107 93-113 (114)
79 1ci6_A Transcription factor AT 40.2 63 0.0021 19.8 7.5 49 49-100 10-59 (63)
80 2zqm_A Prefoldin beta subunit 40.1 76 0.0026 20.7 7.1 39 85-123 77-115 (117)
81 2js5_A Uncharacterized protein 40.0 62 0.0021 20.9 4.9 23 46-68 13-35 (71)
82 1ic2_A Tropomyosin alpha chain 39.9 71 0.0024 20.3 8.3 10 104-113 64-73 (81)
83 1nkd_A ROP; atomic resolution 39.7 71 0.0024 20.3 6.6 23 23-51 7-29 (65)
84 1vcs_A Vesicle transport throu 39.6 47 0.0016 22.1 4.5 42 60-103 15-56 (102)
85 1x8y_A Lamin A/C; structural p 39.6 76 0.0026 20.5 7.7 57 60-116 9-67 (86)
86 2g0u_A Type III secretion syst 39.5 60 0.0021 21.9 5.0 31 31-61 52-82 (92)
87 3hgf_A Rhoptry protein fragmen 38.9 85 0.0029 21.5 5.7 53 59-111 12-64 (107)
88 3tnu_A Keratin, type I cytoske 38.3 96 0.0033 21.3 11.1 62 55-116 53-116 (131)
89 3swf_A CGMP-gated cation chann 38.3 50 0.0017 21.5 4.3 47 65-117 4-50 (74)
90 3gwk_C SAG1039, putative uncha 38.2 72 0.0025 19.9 10.1 28 82-112 52-79 (98)
91 3ljm_A Coil Ser L9C; de novo d 37.9 49 0.0017 17.8 4.1 25 96-120 5-29 (31)
92 2no2_A HIP-I, huntingtin-inter 37.7 94 0.0032 21.1 6.2 39 83-121 6-44 (107)
93 3htk_B Structural maintenance 37.6 73 0.0025 19.8 9.7 63 48-110 9-71 (73)
94 2er8_A Regulatory protein Leu3 37.5 17 0.00059 22.0 1.9 20 85-104 49-68 (72)
95 2z5i_A TM, general control pro 37.1 67 0.0023 19.2 4.8 17 91-107 11-27 (52)
96 4h9n_C Death domain-associated 36.4 1.4E+02 0.0046 23.0 7.2 49 15-63 131-199 (212)
97 1nkp_B MAX protein, MYC proto- 35.5 83 0.0028 19.8 6.4 40 80-119 42-81 (83)
98 3ghg_A Fibrinogen alpha chain; 35.4 2.3E+02 0.0078 24.8 11.6 10 65-74 114-123 (562)
99 2efr_A General control protein 35.3 1.3E+02 0.0044 21.9 15.7 68 14-81 28-97 (155)
100 4gwp_A Mediator of RNA polymer 34.9 1.2E+02 0.004 21.3 6.1 52 23-76 23-76 (115)
101 2xzr_A Immunoglobulin-binding 34.6 1.1E+02 0.0039 21.1 10.8 53 61-113 52-104 (114)
102 2zqm_A Prefoldin beta subunit 34.1 97 0.0033 20.2 6.9 66 55-120 14-91 (117)
103 2avr_X Adhesion A; antiparalle 33.5 1.2E+02 0.0043 21.2 8.5 30 95-124 34-66 (119)
104 1m1j_C Fibrinogen gamma chain; 33.1 2.1E+02 0.0072 23.8 11.6 29 86-114 106-134 (409)
105 3u0c_A Invasin IPAB, 62 kDa an 33.0 1.6E+02 0.0054 22.3 8.7 57 45-104 87-143 (201)
106 3pp5_A BRK1, protein brick1; t 32.2 1E+02 0.0035 19.9 6.5 18 85-102 52-69 (73)
107 1lwu_C Fibrinogen gamma chain; 32.0 1.5E+02 0.005 23.9 7.0 15 89-103 37-51 (323)
108 3gpv_A Transcriptional regulat 31.8 72 0.0024 22.2 4.6 34 82-115 99-132 (148)
109 3coq_A Regulatory protein GAL4 31.4 50 0.0017 20.4 3.4 19 86-104 46-64 (89)
110 4ioe_A Secreted protein ESXB; 31.3 92 0.0032 19.1 9.6 28 82-112 53-80 (93)
111 4abx_A DNA repair protein RECN 30.8 1.4E+02 0.0049 21.1 7.9 61 59-119 89-163 (175)
112 3zbh_A ESXA; unknown function, 30.3 97 0.0033 19.0 9.2 32 55-86 10-41 (99)
113 3sjb_C Golgi to ER traffic pro 30.3 1.3E+02 0.0043 20.4 5.4 71 52-123 21-91 (93)
114 1fmh_A General control protein 30.1 71 0.0024 17.4 4.5 27 87-113 3-29 (33)
115 1lwu_C Fibrinogen gamma chain; 30.1 2.1E+02 0.0071 23.1 7.6 12 87-98 42-53 (323)
116 1fxk_C Protein (prefoldin); ar 30.1 1.3E+02 0.0043 20.3 6.6 37 71-107 8-44 (133)
117 2gtv_X CM, chorismate mutase; 29.9 35 0.0012 23.1 2.6 17 79-95 4-20 (104)
118 3nmd_A CGMP dependent protein 29.6 1.1E+02 0.0039 19.6 6.9 44 73-116 21-64 (72)
119 3hls_A Guanylate cyclase solub 28.8 1.1E+02 0.0036 19.0 4.6 19 100-118 22-40 (66)
120 2yo3_A General control protein 28.7 1.1E+02 0.0036 24.4 5.5 26 86-111 231-256 (268)
121 1gl2_B Syntaxin 7; membrane pr 28.2 1E+02 0.0035 18.6 7.1 34 63-96 11-48 (65)
122 3csx_A Putative uncharacterize 28.0 1.3E+02 0.0045 19.8 5.3 54 45-98 24-77 (81)
123 3tnf_B LIDA, RAS-related prote 27.9 2.4E+02 0.0083 23.1 7.6 81 40-120 25-113 (384)
124 1hwt_C Protein (heme activator 27.9 21 0.00072 21.9 1.1 20 85-104 58-77 (81)
125 4aj5_A SKA1, spindle and kinet 27.8 1.4E+02 0.0048 20.1 6.0 36 86-121 52-87 (91)
126 3gp4_A Transcriptional regulat 27.6 1.5E+02 0.0052 20.4 8.1 29 84-112 87-115 (142)
127 3c1y_A DNA integrity scanning 27.4 1.7E+02 0.006 24.1 6.9 32 67-98 168-199 (377)
128 1dn1_B Syntaxin 1A, syntaxin b 27.4 1.1E+02 0.0037 23.4 5.3 62 59-120 33-98 (267)
129 1fxk_A Prefoldin; archaeal pro 27.3 1.3E+02 0.0043 19.3 6.7 67 54-120 8-86 (107)
130 1q08_A Zn(II)-responsive regul 27.0 1.2E+02 0.0041 19.0 7.2 29 82-110 43-71 (99)
131 1n7s_B Syntaxin 1A; neuronal s 26.9 1.1E+02 0.0038 18.6 7.1 35 62-96 13-51 (68)
132 1lwu_B Fibrinogen beta chain; 26.7 1E+02 0.0034 24.9 5.2 20 87-106 37-56 (323)
133 2oeq_A Protein of unknown func 26.7 1.2E+02 0.004 20.4 4.9 47 2-54 61-109 (122)
134 2fxo_A Myosin heavy chain, car 26.6 1.6E+02 0.0053 20.2 13.4 34 85-118 83-116 (129)
135 3mov_A Lamin-B1; LMNB1, B-type 26.2 1.5E+02 0.005 19.7 8.7 53 63-115 21-75 (95)
136 3m0a_A TNF receptor-associated 26.1 1.1E+02 0.0038 18.3 5.2 9 111-119 52-60 (66)
137 2zdi_C Prefoldin subunit alpha 26.0 1.7E+02 0.0057 20.3 6.5 43 79-121 99-141 (151)
138 1nfn_A Apolipoprotein E3; lipi 26.0 1.9E+02 0.0067 21.1 8.3 10 78-87 113-122 (191)
139 4e61_A Protein BIM1; EB1-like 25.5 1.7E+02 0.0057 20.1 5.9 20 81-100 42-61 (106)
140 2p90_A Hypothetical protein CG 24.9 1.5E+02 0.0051 23.5 5.9 49 40-88 213-263 (319)
141 3e35_A Uncharacterized protein 24.8 90 0.0031 25.1 4.6 70 42-111 218-308 (325)
142 3zqs_A E3 ubiquitin-protein li 24.8 78 0.0027 23.7 3.9 30 65-94 74-103 (186)
143 3he4_A Synzip6; heterodimeric 24.8 1.2E+02 0.0041 18.2 4.0 17 104-120 36-52 (56)
144 1aq5_A Matrilin-1, CMP, cartil 24.5 93 0.0032 18.5 3.5 18 96-113 24-41 (47)
145 3ogi_B ESXO, putative ESAT-6-l 24.1 1.7E+02 0.006 19.9 7.3 42 39-80 52-93 (99)
146 3r84_A Mediator of RNA polymer 23.9 1.6E+02 0.0055 19.4 7.7 35 42-76 39-73 (86)
147 2ap3_A Conserved hypothetical 23.8 2.4E+02 0.0081 21.3 7.5 70 43-112 113-186 (199)
148 3m0d_C TNF receptor-associated 23.7 1.3E+02 0.0045 18.4 8.4 9 111-119 53-61 (65)
149 3fx7_A Putative uncharacterize 23.6 1.7E+02 0.0059 19.6 8.4 32 57-88 9-40 (94)
150 2wam_A RV2714, conserved hypot 23.2 2.4E+02 0.0082 22.9 6.8 14 98-111 329-342 (351)
151 1xwj_B Talin, metavinculin; ce 23.1 86 0.0029 16.0 3.1 19 15-33 5-23 (26)
152 1sfc_B Protein (syntaxin 1A), 23.0 1.5E+02 0.0051 18.7 7.1 34 63-96 23-60 (83)
153 3o0z_A RHO-associated protein 23.0 2.3E+02 0.0079 20.9 7.9 10 109-118 93-102 (168)
154 1ca9_A TRAF2, protein (TNF rec 22.8 1.4E+02 0.0049 21.1 5.0 15 84-98 23-37 (192)
155 2p2u_A HOST-nuclease inhibitor 22.5 2.2E+02 0.0075 20.5 6.3 36 62-97 35-71 (171)
156 3u0c_A Invasin IPAB, 62 kDa an 22.5 2.5E+02 0.0087 21.2 7.2 47 32-82 99-145 (201)
157 2ke4_A CDC42-interacting prote 22.4 1.8E+02 0.0061 19.4 5.1 30 85-114 62-91 (98)
158 1r8e_A Multidrug-efflux transp 22.2 1.7E+02 0.0058 21.5 5.4 33 82-114 83-115 (278)
159 2vz4_A Tipal, HTH-type transcr 21.5 1.5E+02 0.005 19.2 4.5 27 82-108 78-104 (108)
160 2aze_B Transcription factor E2 21.5 1.9E+02 0.0066 19.4 5.5 36 85-120 6-41 (106)
161 2wq1_A General control protein 21.4 1.2E+02 0.004 16.9 4.7 24 78-101 7-30 (33)
162 2ve7_C Kinetochore protein NUF 21.0 2.2E+02 0.0076 21.8 6.0 60 55-121 118-177 (250)
163 1lwu_B Fibrinogen beta chain; 20.9 1.9E+02 0.0065 23.2 5.8 24 93-116 29-52 (323)
164 3tkl_B LIDA protein, substrate 20.8 1.9E+02 0.0066 22.7 5.5 81 40-120 42-130 (267)
165 3hh0_A Transcriptional regulat 20.7 2E+02 0.0067 19.9 5.2 28 84-111 86-113 (146)
166 3rkg_A Magnesium transporter M 20.6 3E+02 0.01 21.3 11.8 28 80-107 222-249 (261)
167 3ajm_A Programmed cell death p 20.6 2.9E+02 0.01 21.2 7.1 54 55-108 92-145 (213)
168 2pft_A Exocytosis protein; hel 20.5 2.2E+02 0.0074 24.1 6.3 43 78-120 25-77 (571)
169 1vp7_A Exodeoxyribonuclease VI 20.5 44 0.0015 22.8 1.6 43 76-118 35-84 (100)
170 1lrz_A FEMA, factor essential 20.4 3.3E+02 0.011 21.7 7.8 16 39-54 198-213 (426)
171 3qne_A Seryl-tRNA synthetase, 20.3 3.9E+02 0.014 22.6 10.3 57 50-106 43-99 (485)
172 1fxk_C Protein (prefoldin); ar 20.0 2.1E+02 0.007 19.2 7.0 40 81-120 91-130 (133)
No 1
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=91.39 E-value=2.9 Score=29.83 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=58.6
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV---TQFEAVISMLDKY 107 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V---~~LE~~a~~LD~y 107 (125)
|.+.+..--.+|..|.+|=.. +|..-+..|..-...+....+.|.++..-...|-+..+.. .+.-.++.+-+.+
T Consensus 7 V~s~l~~LEaeyq~L~~kE~q---rynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~ 83 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEA---RFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 445666667788888887664 4999999999888888888888888777766665543321 3445555566666
Q ss_pred HHHHHHHHHhhh
Q 033198 108 VAVLESKMQSLY 119 (125)
Q Consensus 108 sk~LE~K~k~l~ 119 (125)
.+.|+.+++..+
T Consensus 84 ~~~Ld~eI~~qe 95 (119)
T 2avr_X 84 LKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 2
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.72 E-value=11 Score=32.31 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS--IEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~--Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
....|........+....+++....++..+.|++.+.. +..++..|+..+..|..-...||.++..+.
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566555666666677777777777777766654 678888888888888888888888887543
No 3
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=88.62 E-value=1.5 Score=30.95 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHh--------hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 51 RVAEEYKGFGDVAAGLRVFVEQLKKKSG--------SFD--------EYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 51 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--------~l~--------~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
.++.-|.++.+++++..+.+.+|=++|. .++ .....||++|.+...|-.++.+|-.|.-.|-.
T Consensus 26 tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n~ 104 (109)
T 2ieq_A 26 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINS 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788888888888887777766554 233 44568999999999999999999998876643
No 4
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=84.94 E-value=8.4 Score=27.31 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=67.2
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS----------IEQQVTQFEAV 100 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~----------Ie~~V~~LE~~ 100 (125)
|.++++.....|..|.+|= ..+|.+-+..|..-...+....+.|+.+..-+..|-. ....|.+++.+
T Consensus 7 i~~~l~~Leae~q~L~~~E---~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~ 83 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQE---EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 5677778888888888864 5789999999999999999999999999888888854 45667777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033198 101 ISMLDKYVAVLESKMQS 117 (125)
Q Consensus 101 a~~LD~ysk~LE~K~k~ 117 (125)
...||.-.+..+..+..
T Consensus 84 ~keLd~~ik~qekiIdn 100 (119)
T 3etw_A 84 LKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777765543
No 5
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=83.60 E-value=1.2 Score=23.78 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 033198 101 ISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 101 a~~LD~ysk~LE~K~k~l~ 119 (125)
||+||.-+|+||..+-+++
T Consensus 3 vykldanvkrlekevgkle 21 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLE 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHhhhh
Confidence 6778888888887777665
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=83.46 E-value=4 Score=24.15 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+..+++||-|+..+++-|+-+.+|-.--+.||.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999988888887777774
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.33 E-value=26 Score=32.56 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 39 NNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI-DSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 39 ~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.++++.++.=+...-.+-..+......++..+..+...++.++.-.++. ++++++|..|++....|.+-...||
T Consensus 969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333333322221 2333444444444444444333333
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.59 E-value=3.1 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
|+.||.-|..|+.--.+||.|+.-|++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666555554
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=80.02 E-value=3.6 Score=24.83 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGSF-DEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l-~~yl~qID~Ie~~V~~LE~~a 101 (125)
.+.+.-+..-+++++.|+..+ ...+..||+.-.+|..||+.+
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 445555666677777777774 456778888888888888754
No 10
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=76.51 E-value=7 Score=23.36 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 77 SGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
.++|.-...+++++|..| +.+++++|.-...|+.
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~~ 39 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLKM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 468899999999999765 5678888877665553
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=75.03 E-value=4.7 Score=22.25 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.+|+.|..|-.+|.+|-+...+||.-+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777788888888777777776543
No 12
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.03 E-value=21 Score=24.90 Aligned_cols=67 Identities=25% Similarity=0.276 Sum_probs=42.2
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFD-EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~-~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
+..++......|...++.++.||.... .....|..+++.++.|=..-..|=.|...||.+=-.++|.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 445566666666666666666666643 3455566666666666666666666666666665555553
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.73 E-value=38 Score=27.35 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.8
Q ss_pred HHHHHHHhhhh
Q 033198 25 TSVSAMVKSEL 35 (125)
Q Consensus 25 ~~vs~yl~~El 35 (125)
..+..++.|+.
T Consensus 359 ~~~~~vl~G~~ 369 (471)
T 3mq9_A 359 TAVINAASGRQ 369 (471)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHcCCC
Confidence 44555566653
No 14
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.44 E-value=22 Score=24.39 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 41 TLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 41 d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
+-+||.+ |--+...-..-+....++.+..+.|+.+...+. ..+..+++.-...||.--.+|+.|+..+
T Consensus 3 Hi~LLRK-~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---------~~~~~k~~eq~~~le~lk~eL~~~~~el 70 (107)
T 2no2_A 3 HADLLRK-NAEVTKQVSMARQAQVDLEREKKELEDSLERIS---------DQGQRKTQEQLEVLESLKQELATSQREL 70 (107)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 444444444455555555555555555555544 3333334444444444444444444433
No 15
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=71.07 E-value=13 Score=23.80 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 77 SGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
+++|.....+++++|..| +.+++++|.-...|+
T Consensus 5 ~EEF~~L~rRVlqLE~sl---~gI~SqIDaV~~KL~ 37 (64)
T 3hrn_A 5 YEEFQVLVRRVDRMEHSI---GSIVSKIDAVIVKLE 37 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 467888999999999765 567888888666655
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.28 E-value=23 Score=32.95 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.+....|.+.+++|+..-.++...-.+|...++.+.+|+.-..++-.-.+.||.+..
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555566666666666666655555555555544443
No 17
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=68.88 E-value=37 Score=26.95 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=47.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHH
Q 033198 27 VSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF-----DEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 27 vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l-----~~yl~qID~Ie~~V~~LE~~a 101 (125)
..+||-|=...|.+=.++ -+|..+.+.|. .+..+..++.+|-.-+..| .+..+++|.+-.+|.+.|.++
T Consensus 195 ~edYLlGL~DLtGELmR~--ainsv~~Gd~~----~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v~ 268 (298)
T 3axj_B 195 PTEYILGLSDLTGELMRR--CINSLGSGDTD----TCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVC 268 (298)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHTTCHH----HHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH--HHHHHhccchH----hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444433333 34555555553 3455666666666655554 788899999999999999999
Q ss_pred HHH
Q 033198 102 SML 104 (125)
Q Consensus 102 ~~L 104 (125)
|-|
T Consensus 269 Ydl 271 (298)
T 3axj_B 269 YNV 271 (298)
T ss_dssp HHH
T ss_pred HHh
Confidence 976
No 18
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=68.48 E-value=28 Score=24.51 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhh
Q 033198 106 KYVAVLESKMQSLYQ 120 (125)
Q Consensus 106 ~ysk~LE~K~k~l~~ 120 (125)
.|+..+..+++.+..
T Consensus 112 ~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 112 VFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777777654
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.24 E-value=36 Score=25.70 Aligned_cols=87 Identities=24% Similarity=0.269 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 033198 24 FTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD-EYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 24 f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~-~yl~qID~Ie~~V~~LE~~a~ 102 (125)
|..-|.=++.||+..... +..+-.++......+...+..++.||.... ....+|..+++.++.|-....
T Consensus 36 FqesSrELE~ELE~eL~~----------~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQ----------AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666544222 222334455555555555555555555532 334556666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 033198 103 MLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 103 ~LD~ysk~LE~K~k~l~~ 120 (125)
.|=.|...||..=-.++|
T Consensus 106 ~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 106 QLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 666666666655555544
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.04 E-value=53 Score=27.55 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhH-HHHHHHHHHHH-------H
Q 033198 22 DLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD-EYVQQIDSIEQ-------Q 93 (125)
Q Consensus 22 ~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~-~yl~qID~Ie~-------~ 93 (125)
.++.+..+=+..-++--...+.-+.+.|..+..-+..|.+...+.-+..++....|.++. +.-++|.-|.. .
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ 135 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQR 135 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444445555555555444444444444444443333333333321 11222222222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033198 94 VTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
+..|...+..+=.=-++||.++
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444444445566555
No 21
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=66.84 E-value=6.8 Score=22.72 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=24.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 77 SGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.++|....++++++|..| +.+++++|.-..+|+
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~ 38 (39)
T 3te3_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLK 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 478899999999999765 567888887665554
No 22
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=66.15 E-value=39 Score=26.72 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSF-----DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l-----~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+..+..++.+|-.-+..| .+..+++|.+..+|.++|.++|-|
T Consensus 214 ~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v~Ydl 260 (290)
T 3qb5_K 214 PFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYAL 260 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhhhe
Confidence 344455555554444444 368899999999999999999876
No 23
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=65.84 E-value=2 Score=28.69 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 22 DLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 22 ~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
.||.++-..+. +++.+.++.++|=+|-+..-.-|.-++.-.-++-..+. +.-.-+|+++|++|-+.+
T Consensus 2 ~MFErid~ilk-~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~L~------------~~~~~QideeV~~LKe~I 68 (83)
T 1zke_A 2 HMFEKIRKILA-DIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVN------------EAFFTQLSEEVERLKELI 68 (83)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTTCC------------GGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccccC------------HHHHHHHHHHHHHHHHHH
Confidence 57888877665 57888999999999988888888887765443322111 122456778999999999
Q ss_pred HHHHHHHHH
Q 033198 102 SMLDKYVAV 110 (125)
Q Consensus 102 ~~LD~ysk~ 110 (125)
..|..|-++
T Consensus 69 daLNK~Kke 77 (83)
T 1zke_A 69 NALNKIKKG 77 (83)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 999888664
No 24
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=65.34 E-value=65 Score=27.55 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=29.6
Q ss_pred hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 78 GSFDEYVQ--QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 78 ~~l~~yl~--qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
++...|.+ .|..++.+|..|..++..+......|+..+..+..
T Consensus 147 e~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 147 EKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444544 55567788888888888888888888877776644
No 25
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=64.83 E-value=21 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
++++.|+..+..++.++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~ 113 (115)
T 3zrx_A 91 YLAESINKDIEECNAIIEQFIDY 113 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766544
No 26
>1yo7_A Regulatory protein ROP; protein design, RE-engineering of topology, four-helix bundle, replication regulator; 2.80A {Escherichia coli}
Probab=63.34 E-value=36 Score=23.94 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198 23 LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~ 102 (125)
.--++++||+++. +=|||++|..- +-+.|+--++-=+.-++.|..+..-+....+||.+-.--|..-.
T Consensus 7 tALNMAkFI~aQs------LlLLEKLneLD------lD~~A~~CE~LHe~AE~L~~~l~~r~~~~~~~d~qa~~ce~lhd 74 (120)
T 1yo7_A 7 TALNMARFIRSQT------LTLLEKLNELD------ADEQADICESLHDHADELYRSCLASFKKNGQIDEQADICESLHD 74 (120)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHhhhcC------chHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence 3457899999875 56899999743 33334433444444455666666666666677777766666555
Q ss_pred HHHHHHHHHHHHH
Q 033198 103 MLDKYVAVLESKM 115 (125)
Q Consensus 103 ~LD~ysk~LE~K~ 115 (125)
--|..-..+-+||
T Consensus 75 ~ae~l~~s~~ar~ 87 (120)
T 1yo7_A 75 HADELYRSCLARF 87 (120)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
No 27
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.57 E-value=41 Score=24.32 Aligned_cols=73 Identities=7% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 033198 13 RDELAESLNDLFTSVSAMVK---SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ 85 (125)
Q Consensus 13 ~d~L~~l~~~~f~~vs~yl~---~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~ 85 (125)
.+.|..-...++..++.|+. +|+.--..-...|+.........+.+-+..++.-..++..+++.-.+|+.+++
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666654 45544444444555555544455555555555555555555555555555444
No 28
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=62.16 E-value=22 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
..+++.+.+|--||..|..|...+.-|..|..++.+-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~ 57 (125)
T 4g2k_A 21 DKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999999888654
No 29
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.38 E-value=72 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=33.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 77 SGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 77 y~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
-++...|-..|...+.+|..|+.++...+.-...|+.++..+...
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777778888888888888888778888888777654
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.84 E-value=86 Score=27.47 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033198 93 QVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 93 ~V~~LE~~a~~LD~ysk~LE~K 114 (125)
++..|+.++..+=.=-++||.-
T Consensus 132 nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333444443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.58 E-value=70 Score=26.36 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~ 102 (125)
++++.++..+....+.+.
T Consensus 544 ~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHH
Confidence 333344443333333333
No 32
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=59.47 E-value=25 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..|+.+|+.+.++.++........+.+|.+++.+..
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777778888888877754
No 33
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=59.39 E-value=21 Score=23.82 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+..++......|...++.|..+...+ |...+.-+.-=..|+.++...=.....+-.+++.|.+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~---L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAI---LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666665555543 2211111111234555555555556666666666654
No 34
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=57.59 E-value=68 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 91 EQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 91 e~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
-..+.++...+..|..++..|...+.
T Consensus 275 ~~~~~~~~~~~~~l~~~a~~L~~~v~ 300 (341)
T 3zx6_A 275 AALVEESAAAAAALEEQASRLTEAVA 300 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777765543
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.69 E-value=86 Score=26.14 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|...+.+|..|+.....++.=...|+.++..+.
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.65 E-value=56 Score=23.98 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 033198 13 RDELAESLNDLFTSVSAMVKS----ELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID 88 (125)
Q Consensus 13 ~d~L~~l~~~~f~~vs~yl~~----El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID 88 (125)
+|.|..-...+|+.++.-..+ .......-...|+........+..++......=.+.++.++.-+ ...--+..
T Consensus 37 Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl---~aLqlq~n 113 (152)
T 3a7p_A 37 RNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL---ISGTIENN 113 (152)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 334443344566665533332 12233445566666666677777777766666666666666444 44445677
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEA-VISMLDKYVAVL 111 (125)
Q Consensus 89 ~Ie~~V~~LE~-~a~~LD~ysk~L 111 (125)
.+++++.+|++ --.-+|.|..+-
T Consensus 114 ~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 114 VLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888 666777777543
No 37
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=56.64 E-value=29 Score=20.63 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhh
Q 033198 59 FGDVAAGLRVFVEQLKKKSGS 79 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~ 79 (125)
+.+.+..+..+++.|.-+++.
T Consensus 3 lEekv~~Le~~ld~LqTr~Ar 23 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFAR 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555544444444
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.36 E-value=40 Score=21.75 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
-|+++.+.|..-...+..|-.-.+.|-.|+++++
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666666666666666555
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.98 E-value=71 Score=24.07 Aligned_cols=92 Identities=11% Similarity=0.088 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 25 TSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF-VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 25 ~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~-~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~ 103 (125)
.-+-.-++.+|..+-....=|..-|......+..++......... ....+....++.......+.+-..|..||+.-.-
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 447788899999999999989888888888888888777776554 2334444445555555555555666666655555
Q ss_pred HHHHHHHHHHHHH
Q 033198 104 LDKYVAVLESKMQ 116 (125)
Q Consensus 104 LD~ysk~LE~K~k 116 (125)
|..=.....+.+.
T Consensus 121 lEr~~R~~~~Sle 133 (189)
T 2v71_A 121 LERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 5544444433333
No 40
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=52.97 E-value=69 Score=23.94 Aligned_cols=104 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH-H
Q 033198 13 RDELAESLNDLFTSVSAMVK--SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID-S 89 (125)
Q Consensus 13 ~d~L~~l~~~~f~~vs~yl~--~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID-~ 89 (125)
..+|.++.++-=..+..|+. ..+.....+..-+...+.........+...-..+...+..+++.+.++....+..| .
T Consensus 40 ~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ 119 (192)
T 2p22_C 40 SKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSE 119 (192)
T ss_dssp THHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777655455667775 33555555555555555555556566666666677777777777777755555553 4
Q ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 I------EQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 90 I------e~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
| +.=...|..+|.+.|+=|..|+.+|.
T Consensus 120 ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 120 FSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4 33457899999999999999999884
No 41
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=52.30 E-value=27 Score=24.22 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 64 AGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 64 ~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
.+|...+..|++....+......|+++..++..|..+.
T Consensus 2 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 2 STLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777776777677777777777766666643
No 42
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=51.91 E-value=27 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 64 AGLRVFVEQLKKKSGSF----DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 64 ~~l~~~~~~Ln~ky~~l----~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
..+..++++|..-+..| ....+++|.+...|.+.|.++|.|
T Consensus 183 ~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Ydl 227 (249)
T 3axj_A 183 LNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 227 (249)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333332 367899999999999999999854
No 43
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=51.49 E-value=51 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=17.5
Q ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHHHHH
Q 033198 70 VEQLKKKSGS-FDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 70 ~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE 98 (125)
..++=.+|+. +..|-++|+++|..|..+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444 7777777777777765544
No 44
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=50.13 E-value=38 Score=20.08 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
++|+.|..||..+..|-.-..+|=+.|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555554444444333
No 45
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=49.92 E-value=7.5 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 61 DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+...........+++++++++..-++|+++..++.+.+..+-..=.|..+|..++..+.
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~ 203 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhce
Confidence 33333444445555555555555555666666655555444444456666666665554
No 46
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=49.51 E-value=14 Score=23.89 Aligned_cols=19 Identities=5% Similarity=0.405 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
.|..+..+||.||.++-.|
T Consensus 4 ~L~~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998765
No 47
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=49.26 E-value=7.6 Score=21.23 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198 94 VTQFEAVISMLDKYVAVLESKMQSLYQHH 122 (125)
Q Consensus 94 V~~LE~~a~~LD~ysk~LE~K~k~l~~~~ 122 (125)
+..||+-+..|++-+..-|.|+..+++.+
T Consensus 2 iaaleqkiaaleqkcaaceqkiaaleqkg 30 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALEQKG 30 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555566666666677777776654
No 48
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=48.51 E-value=54 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=13.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHhh
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGS 79 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~ 79 (125)
++...+..|..+++.|.-|++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfAR 25 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFAR 25 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555
No 49
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=48.49 E-value=36 Score=24.34 Aligned_cols=62 Identities=10% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQI----DSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI----D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+-+.+..|...+..+......|+..-..+ +.-..-=..|+.++...-.-.+.+..+++.|.+
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433331 111111255666666666667777777777664
No 50
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=48.30 E-value=57 Score=21.61 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 033198 21 NDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI 87 (125)
Q Consensus 21 ~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI 87 (125)
...|..| .-|+.++......++-|..+|...-..-......-..|...+.+.+.+...++.-|+.|
T Consensus 8 ~~F~~~v-~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l 73 (127)
T 1ez3_A 8 DEFFEQV-EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSI 73 (127)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 34677777777888888888876543322223333344444445555555554444433
No 51
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=47.61 E-value=20 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSF----DEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l----~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
+..+..++++|..-+..| ....+++|.+-..|.+.|.++|.|
T Consensus 179 ~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Ydl 224 (240)
T 1j1j_A 179 PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 224 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555544443 477899999999999999999876
No 52
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=47.60 E-value=14 Score=24.56 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..|..+.++||.||.++-.|
T Consensus 8 ~~L~~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 8 TGLADIREAIDRIDLDIVQA 27 (101)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45888999999999998665
No 53
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=47.52 E-value=22 Score=24.38 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSG-SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~-~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
..++......|..... .++|++..-...+.-...++..|..+|.++..||.
T Consensus 55 ~~~~~~~y~~l~~~W~~~l~p~l~~~~~~~~~~~~v~~FV~~ID~lV~~LE~ 106 (125)
T 3ezh_A 55 RDGQLAQLQGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDR 106 (125)
T ss_dssp HHTCHHHHHHHHHHHHHTHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777776 78888765433333345556666777777766663
No 54
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=47.44 E-value=1.1e+02 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHhHHHHHHHhhHHHHHHhHHHHHHHH
Q 033198 47 KMNLRVAEEYKGFGDVAAGLRVFVEQL 73 (125)
Q Consensus 47 ~mN~~~s~kY~~m~~~a~~l~~~~~~L 73 (125)
..|.-+-.++..|.....++.+.+.++
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~ 235 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQI 235 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444444333
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.23 E-value=1.3e+02 Score=25.28 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.3
Q ss_pred HHHHHH
Q 033198 95 TQFEAV 100 (125)
Q Consensus 95 ~~LE~~ 100 (125)
.+||..
T Consensus 151 qRLE~~ 156 (390)
T 1deq_A 151 KRLEVD 156 (390)
T ss_pred HHHHHH
Confidence 334433
No 56
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=46.16 E-value=30 Score=19.65 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAV 100 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~ 100 (125)
+...+.-|..|++.+-.+|.+=..||.-
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~ 35 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAE 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466778888887777776666653
No 57
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=46.09 E-value=17 Score=24.88 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~L 97 (125)
..|..+..+||.||.++-.|
T Consensus 12 ~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999998766
No 58
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=45.71 E-value=19 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
-|=++++.++.++..||..++.|
T Consensus 56 ~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 56 RYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888888765
No 59
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=45.61 E-value=79 Score=22.48 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=33.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 58 GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVA 109 (125)
Q Consensus 58 ~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk 109 (125)
+++.-...|...++.+......-....+.++.|...+..+..++..|-.|++
T Consensus 50 elr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~ 101 (268)
T 4ew8_A 50 ELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQ 101 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655543333444556677777888888888877777665
No 60
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=44.66 E-value=17 Score=24.22 Aligned_cols=19 Identities=5% Similarity=0.286 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
.|..+..+||.||.++-.|
T Consensus 6 ~L~~lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 6 PLLALREKISALDEKLLAL 24 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998765
No 61
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=44.64 E-value=29 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q 033198 92 QQVTQFEAVISMLD-KYVAVLESKMQ 116 (125)
Q Consensus 92 ~~V~~LE~~a~~LD-~ysk~LE~K~k 116 (125)
..+++||.++++|+ .|-.+||..-+
T Consensus 23 ~nL~ELE~is~rlg~~Y~~~LeeaK~ 48 (53)
T 1x9b_A 23 RNLNELEALAVRLGKSYRIQLDQAKE 48 (53)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 45678999999997 68899986544
No 62
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=44.55 E-value=66 Score=21.41 Aligned_cols=24 Identities=4% Similarity=0.225 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD 105 (125)
+--+.|.+|+..+.+-+.++.++|
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMe 69 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEME 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 63
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.21 E-value=61 Score=20.80 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=42.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 033198 59 FGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQF-EAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~k 116 (125)
++..-.++...+.+++..|.. +..|-..|..+|..+..+ ..++..+..|-.-|-.|++
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~ 65 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455778888888888876 888888888888888777 4566677777766666654
No 64
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=44.07 E-value=68 Score=21.29 Aligned_cols=41 Identities=12% Similarity=0.341 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhc
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISML-----------DKYVAVLESKMQSLYQH 121 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~L-----------D~ysk~LE~K~k~l~~~ 121 (125)
..+..-+.+|+..|..|+++|... -.|+..|+.+++.|...
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666542 25777888887777653
No 65
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=44.01 E-value=20 Score=23.65 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
.|..+..+||.||.++-.|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~L 36 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISL 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998765
No 66
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=42.92 E-value=63 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLD 105 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD 105 (125)
..|.+|+..+.+.+.++.++|
T Consensus 34 ~~i~~ie~~ldEA~ell~qMe 54 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMD 54 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 67
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.86 E-value=95 Score=22.60 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHH
Q 033198 25 TSVSAMVKSELQGTNNTLELLEK 47 (125)
Q Consensus 25 ~~vs~yl~~El~~t~~d~~LLe~ 47 (125)
.-|+. ++++|+-+-+-...-+.
T Consensus 21 eEvaR-~E~dLEraEERae~aE~ 42 (155)
T 2efr_A 21 NEVAR-LKKLLERAEERAELSEG 42 (155)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 33444 56666655555444443
No 68
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.78 E-value=79 Score=21.66 Aligned_cols=62 Identities=11% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQF-EAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~k 116 (125)
+-..++..-.+|...+.+++..|.. +..+-..|..+|..+..+ .+++..+..|-.-|-.|+.
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556778888888888875 777888888888888777 5677788888877776654
No 69
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=42.63 E-value=19 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~L 97 (125)
.|..+..+||.||.++-.|
T Consensus 13 ~L~~lR~~ID~iD~~Ll~L 31 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILAL 31 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4888999999999998766
No 70
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=42.37 E-value=33 Score=20.40 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ 106 (125)
.|+.++.+|..||..+..|..
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777776665543
No 71
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=42.00 E-value=43 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
.||.++.-+|.==.+|+.+...+|..++
T Consensus 30 ~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~ 57 (64)
T 3t97_C 30 RLDQELDFILSQQKELEDLLSPLEESVK 57 (64)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444433
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.77 E-value=52 Score=19.26 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 88 DSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 88 D~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
.++|.++..||....+|++-.+-|+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665666555555554
No 73
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=41.70 E-value=39 Score=22.59 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=25.9
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGD 61 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~ 61 (125)
+=++++....+|.++.|+|-.+..-|+++-.
T Consensus 46 ~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~ 76 (85)
T 2ca5_A 46 LLAEYQSKLSEYTLYRNAQSNTVKVIKDVDA 76 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999999887776644
No 74
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.27 E-value=73 Score=20.83 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
+..+-.+|..+..++..|...+..|+.....|+.+++.+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777766443
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.19 E-value=32 Score=28.28 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 90 IEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 90 Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
++..+..+.+...+-+.--++|-+.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 29 TELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333444444444433
No 76
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.17 E-value=1.7e+02 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
..|+.+..+|..||..+..+..
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 77
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=40.78 E-value=63 Score=19.92 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHH
Q 033198 62 VAAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQ 96 (125)
Q Consensus 62 ~a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~ 96 (125)
-...|...+.+|++.+..|...+. .||.||..|..
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 45 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677788888888888877763 57778777654
No 78
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=40.73 E-value=59 Score=19.60 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~y 107 (125)
++.|..++..|..++..|=.|
T Consensus 93 ~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 93 AESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 377788888888887776544
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.15 E-value=63 Score=19.76 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=29.9
Q ss_pred hHHHHHHHh-hHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 033198 49 NLRVAEEYK-GFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAV 100 (125)
Q Consensus 49 N~~~s~kY~-~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~ 100 (125)
|++++.+|- +-++-...+...++.|.....+|. .+|..++..+..|-.+
T Consensus 10 Nr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~---~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 10 NKTAATRYRQKKRAEQEALTGECKELEKKNEALK---ERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 778888885 455556667777777776666554 3445555555554443
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.07 E-value=76 Score=20.69 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~~ 123 (125)
..++.|+..+..|+.-...+..=...|+.++..+...++
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~ 115 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPPT 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 345555666666666666666666666666665554443
No 81
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.03 E-value=62 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHhhHHHHHHhHHH
Q 033198 46 EKMNLRVAEEYKGFGDVAAGLRV 68 (125)
Q Consensus 46 e~mN~~~s~kY~~m~~~a~~l~~ 68 (125)
.++|..++.-=.++-|.+.+|=.
T Consensus 13 kKL~~~A~q~kmdLHDLaEdLP~ 35 (71)
T 2js5_A 13 KKLNAQATALKMDLHDLAEDLPT 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHhHHHHhccchh
Confidence 45555555555555555544433
No 82
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.88 E-value=71 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 033198 104 LDKYVAVLES 113 (125)
Q Consensus 104 LD~ysk~LE~ 113 (125)
|......||.
T Consensus 64 l~~a~~kLee 73 (81)
T 1ic2_A 64 LKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 83
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=39.70 E-value=71 Score=20.25 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhHH
Q 033198 23 LFTSVSAMVKSELQGTNNTLELLEKMNLR 51 (125)
Q Consensus 23 ~f~~vs~yl~~El~~t~~d~~LLe~mN~~ 51 (125)
.--++++||+++. +=|||++|..
T Consensus 7 talNMAkFI~~Qs------LlLLEKLneL 29 (65)
T 1nkd_A 7 TALNMARFIRSQT------LTLLEKLNEL 29 (65)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHH
Confidence 3357899999875 5689999976
No 84
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=39.64 E-value=47 Score=22.13 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISM 103 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~ 103 (125)
.....+|...+..+..... .+--+.|.+|+..+.+-+.++.+
T Consensus 15 ~~l~~~i~~kl~~i~~~~g--eerk~~i~~ie~~l~EA~ell~q 56 (102)
T 1vcs_A 15 AVLTAEITSKIARVPRLPP--DEKKQMVANVEKQLEEARELLEQ 56 (102)
T ss_dssp HHHHHHHHHHHHHGGGSCT--TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444432211 22333444444444444444443
No 85
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.59 E-value=76 Score=20.52 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 033198 60 GDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFEA-VISMLDKYVAVLESKMQ 116 (125)
Q Consensus 60 ~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE~-~a~~LD~ysk~LE~K~k 116 (125)
+..-.++...+.+++..|.. +.+|-.+|..+|.++..+-. +...+..|-.-|-.|++
T Consensus 9 ~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~ 67 (86)
T 1x8y_A 9 QCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLA 67 (86)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344677777788877765 77777888888877776643 44556666655555543
No 86
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=39.46 E-value=60 Score=21.92 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=26.5
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHH
Q 033198 31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGD 61 (125)
Q Consensus 31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~ 61 (125)
+=+++++...+|++..|++-++..-|+++.+
T Consensus 52 ~LAe~Qa~lseynl~RNaQSntiKa~KD~~q 82 (92)
T 2g0u_A 52 ALANYQMIMSEYNLYRNAQSSAVKSMKDIDS 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999988877643
No 87
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=38.92 E-value=85 Score=21.49 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
+.....++...+..-+..|+++...|..|..||..-+.||.+-.-==+|-+.|
T Consensus 12 ~ekKi~nIVtKIDkkKnIy~~inKLlnEIseIe~d~tSle~vk~INlSYg~SL 64 (107)
T 3hgf_A 12 IEKKIENIVTKIDKKKYIYDNMKKLLNEIAEIEKDKTSLEEVKNINMSYGKSL 64 (107)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcccccHHHHHhcchHHHHhH
Confidence 33444455555555556666666666666666666666665543333343333
No 88
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.26 E-value=96 Score=21.32 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQF-EAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~k 116 (125)
+-..++..-.+|...+.+++..|.. +..|-..|..+|..+..+ .+++..+-.|-.-|-.|+.
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556778888888888875 778888888888888776 4567778888777766654
No 89
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.25 E-value=50 Score=21.50 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033198 65 GLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQS 117 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 117 (125)
++...++.|..--+.|+--+..| +.+++.+-.+|=+....||.+++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARL------LaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARI------LAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444443333332 234455555566666666666654
No 90
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=38.21 E-value=72 Score=19.89 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.|..+..+....+.. ++..|+.++..|.
T Consensus 52 aF~~~~~~~~~~~~~---~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 52 SFEAQFNELSPKITE---FAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344444444444433 3334444444444
No 91
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=37.85 E-value=49 Score=17.83 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 96 QFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 96 ~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.||.-...|++-...||.|+..+++
T Consensus 5 alekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555566666666654
No 92
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.66 E-value=94 Score=21.08 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 83 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
.|.+--++.++++.-.++...++...+.|+.+|..+.++
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~ 44 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQ 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888899999999999999999999998886643
No 93
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.58 E-value=73 Score=19.79 Aligned_cols=63 Identities=8% Similarity=0.003 Sum_probs=38.3
Q ss_pred HhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 48 MNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 48 mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
.+......|....+....+...+..+.....++..--=.+-+.......++.++..++.+-..
T Consensus 9 ~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~e 71 (73)
T 3htk_B 9 IDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREAD 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666665444434445556677777777777766543
No 94
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.51 E-value=17 Score=21.97 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~L 104 (125)
..|..+|.+|..||..+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766544
No 95
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.09 E-value=67 Score=19.17 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033198 91 EQQVTQFEAVISMLDKY 107 (125)
Q Consensus 91 e~~V~~LE~~a~~LD~y 107 (125)
|.+|.+||..|..|..-
T Consensus 11 ERsV~KLek~ID~LEde 27 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDE 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666666543
No 96
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=36.40 E-value=1.4e+02 Score=22.97 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhh----hh----------------hhhhhHHHHHHHHhHHHHHHHhhHHHHH
Q 033198 15 ELAESLNDLFTSVSAMVKS----EL----------------QGTNNTLELLEKMNLRVAEEYKGFGDVA 63 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~----El----------------~~t~~d~~LLe~mN~~~s~kY~~m~~~a 63 (125)
.+.++|+++|..|+.+|+- ++ ..+..|=.|++++..+-...+..+.++.
T Consensus 131 ~~~~iA~daF~~vG~~LQ~RR~~Dl~~~~~~hlt~~~~~~~DPA~~D~~L~~KL~eN~~~~~~kl~ev~ 199 (212)
T 4h9n_C 131 QLQLMAQDAFRDVGIRLQERRHLDLIYNFGCHLTDDYRPGVDPALSDPVLARRLRENRSLAMSRLDEVI 199 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSCGGGTTCCGGGCGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999872 33 4567888999999988777666665554
No 97
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.53 E-value=83 Score=19.81 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY 119 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~ 119 (125)
|..-.+.|..+..++..|+.-+..|-.-...|+.++..++
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555555555555555555555555666655543
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.41 E-value=2.3e+02 Score=24.85 Aligned_cols=10 Identities=50% Similarity=0.567 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 033198 65 GLRVFVEQLK 74 (125)
Q Consensus 65 ~l~~~~~~Ln 74 (125)
.|++.+..|+
T Consensus 114 ELRRrIqyLK 123 (562)
T 3ghg_A 114 DLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 99
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.34 E-value=1.3e+02 Score=21.90 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhH
Q 033198 14 DELAESLNDLFTSVSA--MVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFD 81 (125)
Q Consensus 14 d~L~~l~~~~f~~vs~--yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~ 81 (125)
.+|.+.-.++=..-++ =+..++.++...++-|+.--...+.+=..+..-...+...++....+++.-.
T Consensus 28 ~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 28 KLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444333333 3667888888888888888888888888888888888888887777776543
No 100
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=34.91 E-value=1.2e+02 Score=21.32 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHh--hhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 033198 23 LFTSVSAMVK--SELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKK 76 (125)
Q Consensus 23 ~f~~vs~yl~--~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k 76 (125)
|+..+|..+. +++.-... .+=...-..+..=|..+..+|.+|++.++.|..-
T Consensus 23 lL~~~S~~~~t~~elK~g~~--~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDeN 76 (115)
T 4gwp_A 23 MLQEASQVTFIFGELKRGNE--SVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76 (115)
T ss_dssp HHHHHHHHHHHHHHHTTTCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455554 34443333 3456788999999999999999999999998863
No 101
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=34.57 E-value=1.1e+02 Score=21.08 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 61 DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 61 ~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
..+..+......||.....+.+..+...++++++..|-.-.|.|+.-..+|-.
T Consensus 52 anTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 52 ANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455556666777777778888888888888888888888888877776643
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.13 E-value=97 Score=20.16 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=32.1
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV------------TQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V------------~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+|..+..-...+...+..++....++.--+..|..++... ...+.+...|+.-...|+..++.++.
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~ 91 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALER 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554455555444444444444444444444443321 13455555556666666666655543
No 103
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=33.47 E-value=1.2e+02 Score=21.23 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhhhcCCC
Q 033198 95 TQFEAVISMLDKY---VAVLESKMQSLYQHHPT 124 (125)
Q Consensus 95 ~~LE~~a~~LD~y---sk~LE~K~k~l~~~~~~ 124 (125)
...|.++..|+++ -..++.|+..++....+
T Consensus 34 a~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~ 66 (119)
T 2avr_X 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANT 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467778888888 46778888777766554
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.10 E-value=2.1e+02 Score=23.75 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
+|..++..+..+..-+..|..-...|+.+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444433
No 105
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=32.95 E-value=1.6e+02 Score=22.28 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 45 LEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 45 Le~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~L 104 (125)
=++.+..-+.+|...-+.|.+....+++-+.+|..-+ +.++..+++|..+++-++.|
T Consensus 87 ~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ad---s~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 87 RQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNAD---SKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhcC
Confidence 3455666666666666666666666666555555443 34445555555554444333
No 106
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.19 E-value=1e+02 Score=19.89 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVIS 102 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~ 102 (125)
.+|+.+|.++.-||+-+.
T Consensus 52 ~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 52 EKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555554443
No 107
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.00 E-value=1.5e+02 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033198 89 SIEQQVTQFEAVISM 103 (125)
Q Consensus 89 ~Ie~~V~~LE~~a~~ 103 (125)
..+.+|..|++.+..
T Consensus 37 ~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 37 VNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 108
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.79 E-value=72 Score=22.24 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKM 115 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 115 (125)
-.-+++..|++++..|+.....|+.....++.-.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888887777776665543
No 109
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.45 E-value=50 Score=20.41 Aligned_cols=19 Identities=11% Similarity=0.483 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~L 104 (125)
.|+.++.+|..||..+..|
T Consensus 46 ~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776655
No 110
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=31.29 E-value=92 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
.|.++..+....+..+ ...|+.+...|.
T Consensus 53 af~~~~~~~~~~~~~~---~~~L~~i~~~L~ 80 (93)
T 4ioe_A 53 KFRGEFIQSKQAMQQY---IPILEGISTDLK 80 (93)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3444444333333333 333444444443
No 111
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=30.83 E-value=1.4e+02 Score=21.13 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Q 033198 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQI-------DSIEQQVTQFEAVIS-------MLDKYVAVLESKMQSLY 119 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI-------D~Ie~~V~~LE~~a~-------~LD~ysk~LE~K~k~l~ 119 (125)
+...+..+....-.|..-..++..|+..| +.|++++..|-.+.. .|=.|-..+..++..+.
T Consensus 89 l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l~ 163 (175)
T 4abx_A 89 VMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLE 163 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555443 355555555554432 24445555555555543
No 112
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.26 E-value=97 Score=19.00 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQ 86 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~q 86 (125)
.|..|...+..+......++.....|...++.
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444444433333
No 113
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.25 E-value=1.3e+02 Score=20.35 Aligned_cols=71 Identities=8% Similarity=0.239 Sum_probs=36.5
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 033198 52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHP 123 (125)
Q Consensus 52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~~ 123 (125)
.+.+|..+..-.-.+...+..+..+ .+|..+.+.=..+|+-..+||..-..|..-.+....-|..++++++
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQ-DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~~~~ 91 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQ-DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLEHHHH 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444444444444444333322 3455555555566666677777788888888888888888887765
No 114
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.14 E-value=71 Score=17.39 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISMLDKYVAVLES 113 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~ 113 (125)
+-++|+.|..-|+--|+|++-+.+||.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 446777777777777777777777764
No 115
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.08 E-value=2.1e+02 Score=23.06 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFE 98 (125)
Q Consensus 87 ID~Ie~~V~~LE 98 (125)
|++++.+|..|+
T Consensus 42 i~~l~~~i~~l~ 53 (323)
T 1lwu_C 42 VTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 116
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.08 E-value=1.3e+02 Score=20.28 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 71 EQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 71 ~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
..+++....++...+++..+...+.+++.+...|+..
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333334445556666666666666666666666543
No 117
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=29.89 E-value=35 Score=23.13 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033198 79 SFDEYVQQIDSIEQQVT 95 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~ 95 (125)
.|..+..+||.||.++-
T Consensus 4 ~L~~lR~~ID~ID~~il 20 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKIL 20 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888999999999987
No 118
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.63 E-value=1.1e+02 Score=19.62 Aligned_cols=44 Identities=11% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 73 LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 73 Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
+.+....|+.-..+|.+-|..|..||.-....|.-.+.|=+.+-
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455555555666666666666666666666666655443
No 119
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=28.81 E-value=1.1e+02 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033198 100 VISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 100 ~a~~LD~ysk~LE~K~k~l 118 (125)
.+.+++.|+..||.+.+.+
T Consensus 22 L~~~lE~~~~~Lee~t~~L 40 (66)
T 3hls_A 22 LTQELEMLTDRLQLTLRAL 40 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 120
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=28.71 E-value=1.1e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
.+.+||+.|.++-+-++.||.-..|+
T Consensus 231 ~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 231 KMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666655554
No 121
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=28.23 E-value=1e+02 Score=18.63 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQ 96 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~ 96 (125)
...|...+.+|++.+..|...+. .||.||..|..
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 48 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVES 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888877763 57777777654
No 122
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=28.01 E-value=1.3e+02 Score=19.77 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198 45 LEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 45 Le~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE 98 (125)
+.++|..++.-=.++.|.+.+|=..-+.+-.--...-.-...+++...++..+|
T Consensus 24 vkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 24 VRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776777776666555544444444444344444555555554444
No 123
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=27.94 E-value=2.4e+02 Score=23.11 Aligned_cols=81 Identities=15% Similarity=0.316 Sum_probs=63.7
Q ss_pred hHHHHHHHHhHHHHHHHhhHHHHHHhHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 40 NTLELLEKMNLRVAEEYKGFGDVAAGLRVF--------VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 40 ~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~--------~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
.-+.-||+=-+....||..+.....+-... .+++|.+.+.|..--..|-+|.++..+=|+-|..|-.=.+-+
T Consensus 25 ~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l~~~~e~~T~imEs~p~DeeEa~kLlhKh~~~ 104 (384)
T 3tnf_B 25 KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDI 104 (384)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccHHHHHHHHHhhccc
Confidence 345567777888889999998888776654 467888888887777778888888888888888888888888
Q ss_pred HHHHHhhhh
Q 033198 112 ESKMQSLYQ 120 (125)
Q Consensus 112 E~K~k~l~~ 120 (125)
-.|+.+|+.
T Consensus 105 ~~KlaNLQd 113 (384)
T 3tnf_B 105 KAKLANLQV 113 (384)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhHHH
Confidence 888888875
No 124
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.88 E-value=21 Score=21.95 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISML 104 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~L 104 (125)
..|+.+++.|..||..+..|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56777788888887766554
No 125
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=27.75 E-value=1.4e+02 Score=20.08 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 86 QIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 86 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
-++.+|..|..=|++...|-+....+|.-++.++|-
T Consensus 52 LLn~~E~eV~~Qe~~~~sLKEL~~s~e~d~kdv~HL 87 (91)
T 4aj5_A 52 LLNKLELEIQYQEQTNNSLKELCESLEEDYKDIEHL 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777777664
No 126
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.59 E-value=1.5e+02 Score=20.41 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVAVLE 112 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE 112 (125)
-+++..|++++..|+.+...|+......+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566555555555554444443
No 127
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=27.45 E-value=1.7e+02 Score=24.13 Aligned_cols=32 Identities=6% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198 67 RVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE 98 (125)
Q Consensus 67 ~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE 98 (125)
......+|+....|+.|...+|+.-..++.||
T Consensus 168 ~~l~~~l~q~l~tle~y~~~ld~~~~~L~~LE 199 (377)
T 3c1y_A 168 DFLISKVTQAISTLEKYKDNFNKLLSELEVLE 199 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 34457778888899999999999999999999
No 128
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=27.43 E-value=1.1e+02 Score=23.45 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS----IEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~----Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
+-+.+..|...+..++..-.+|....+.|-. -+.-=.+|+.++..+-.-...+-.+++.|.+
T Consensus 33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~ 98 (267)
T 1dn1_B 33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 98 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444444444443310 0011124455555555555555666666544
No 129
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.29 E-value=1.3e+02 Score=19.30 Aligned_cols=67 Identities=6% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 54 EEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV------------TQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 54 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V------------~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.+|..+..-...+...+..++....++.--+.-|..++..- ...+.+...|+.-...|+.+++.++.
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333210 12344555555555555555555543
No 130
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.00 E-value=1.2e+02 Score=19.00 Aligned_cols=29 Identities=7% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAV 110 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 110 (125)
-.-.++..|++++..|......|+.+...
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777665543
No 131
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=26.90 E-value=1.1e+02 Score=18.56 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHH
Q 033198 62 VAAGLRVFVEQLKKKSGSFDEYV----QQIDSIEQQVTQ 96 (125)
Q Consensus 62 ~a~~l~~~~~~Ln~ky~~l~~yl----~qID~Ie~~V~~ 96 (125)
-...|...+.+|++.+..|...+ ..||.||..|..
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 51 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 51 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566777778888888877766 357777776654
No 132
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=26.71 E-value=1e+02 Score=24.86 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 87 IDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 87 ID~Ie~~V~~LE~~a~~LD~ 106 (125)
++.++++|..||..+..+..
T Consensus 37 le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 37 LEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433
No 133
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=26.70 E-value=1.2e+02 Score=20.41 Aligned_cols=47 Identities=6% Similarity=0.049 Sum_probs=28.0
Q ss_pred CCCCCCcChhhHHHHHHHHHHH--HHHHHHHHhhhhhhhhhHHHHHHHHhHHHHH
Q 033198 2 AGKEEEPKTEARDELAESLNDL--FTSVSAMVKSELQGTNNTLELLEKMNLRVAE 54 (125)
Q Consensus 2 ~~~~~~~~~~~~d~L~~l~~~~--f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~ 54 (125)
.|+ +|.+.....+.++-..+ ...|+.|+++|..-. .||..+|...+.
T Consensus 61 ~G~--~~~~e~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~----~ll~~I~~iI~~ 109 (122)
T 2oeq_A 61 RGA--AILPDEIEQAQKAMALAQQNEKLARLMALEQQMS----ITIAEVQQIAMK 109 (122)
T ss_dssp TTC--CCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 455 33444455565554443 355888988887655 566666665543
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.56 E-value=1.6e+02 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 118 (125)
.+|.++..++...|.....|-.=-+.||..+..+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444444433
No 135
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.19 E-value=1.5e+02 Score=19.68 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=34.1
Q ss_pred HHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQFE-AVISMLDKYVAVLESKM 115 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~LE-~~a~~LD~ysk~LE~K~ 115 (125)
-.++...+.+++..|.. +..|-..|..+|..+..+- +++..+..|-.-|-.|+
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 75 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKL 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777664 6667777777777776653 34555666765555554
No 136
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=26.15 E-value=1.1e+02 Score=18.35 Aligned_cols=9 Identities=56% Similarity=0.571 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 033198 111 LESKMQSLY 119 (125)
Q Consensus 111 LE~K~k~l~ 119 (125)
||.|+..++
T Consensus 52 Le~k~~~l~ 60 (66)
T 3m0a_A 52 LSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 137
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.99 E-value=1.7e+02 Score=20.30 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 79 SFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 79 ~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
...-+-..|+.++.++..|+.....+-.-...++..+..+++.
T Consensus 99 A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 99 AISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777777777777776654
No 138
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=25.97 E-value=1.9e+02 Score=21.08 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.2
Q ss_pred hhhHHHHHHH
Q 033198 78 GSFDEYVQQI 87 (125)
Q Consensus 78 ~~l~~yl~qI 87 (125)
..|.||...+
T Consensus 113 ~kL~P~~eEL 122 (191)
T 1nfn_A 113 GRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 3356665544
No 139
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.46 E-value=1.7e+02 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033198 81 DEYVQQIDSIEQQVTQFEAV 100 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~ 100 (125)
+-|+.++.+||-=+..-+..
T Consensus 42 DFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 42 EFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45888888887777666554
No 140
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=24.94 E-value=1.5e+02 Score=23.48 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=27.0
Q ss_pred hHHHHHHHHhHHHHH--HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 033198 40 NTLELLEKMNLRVAE--EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID 88 (125)
Q Consensus 40 ~d~~LLe~mN~~~s~--kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID 88 (125)
.=..||+.+|+.... -..++...|..++..++++-+...++..|++++.
T Consensus 213 AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE 263 (319)
T 2p90_A 213 ATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALE 263 (319)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 335666766665542 2355555555555555555555555555554443
No 141
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=24.85 E-value=90 Score=25.11 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHH----HhhHHHHHHhHHHHHHHHHHH-HhhhHHHHHHHHHHHHH----------------HHHHHHH
Q 033198 42 LELLEKMNLRVAEE----YKGFGDVAAGLRVFVEQLKKK-SGSFDEYVQQIDSIEQQ----------------VTQFEAV 100 (125)
Q Consensus 42 ~~LLe~mN~~~s~k----Y~~m~~~a~~l~~~~~~Ln~k-y~~l~~yl~qID~Ie~~----------------V~~LE~~ 100 (125)
..||+.++..+... ..++.+.|..++..+.++-+. ..++..|++++.+--+. +-.=|++
T Consensus 218 ~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~~~~~~~~~~~l~~~~~~ps~del 297 (325)
T 3e35_A 218 LTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDAAAGAETRGNMLAEPVEIPSADEI 297 (325)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhccccccccccCCCCCHHHH
Confidence 45555555554444 335555666666666555555 55555555544322111 1112666
Q ss_pred HHHHHHHHHHH
Q 033198 101 ISMLDKYVAVL 111 (125)
Q Consensus 101 a~~LD~ysk~L 111 (125)
+.+++.|..+.
T Consensus 298 ~~efErfL~~~ 308 (325)
T 3e35_A 298 GREFERFLAER 308 (325)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 67777776654
No 142
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=24.83 E-value=78 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198 65 GLRVFVEQLKKKSGSFDEYVQQIDSIEQQV 94 (125)
Q Consensus 65 ~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V 94 (125)
+|..-.++..+--++|++|.+.+|+||+..
T Consensus 74 sL~~v~~qF~~~Le~lq~Fwd~ldeID~~~ 103 (186)
T 3zqs_A 74 SLISIYSQFLAAIESLKAFWDVMDEIDEKT 103 (186)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 455556666666678999999999999863
No 143
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.83 E-value=1.2e+02 Score=18.25 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 033198 104 LDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 104 LD~ysk~LE~K~k~l~~ 120 (125)
|+.-...||..+..++|
T Consensus 36 lekdianlekdianler 52 (56)
T 3he4_A 36 LEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 144
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.47 E-value=93 Score=18.53 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033198 96 QFEAVISMLDKYVAVLES 113 (125)
Q Consensus 96 ~LE~~a~~LD~ysk~LE~ 113 (125)
.|+....+|+.-|++||.
T Consensus 24 ~l~~Lt~kL~~vt~rle~ 41 (47)
T 1aq5_A 24 LINTLQQKLEAVAKRIEA 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555556666665553
No 145
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=24.06 E-value=1.7e+02 Score=19.87 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh
Q 033198 39 NNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF 80 (125)
Q Consensus 39 ~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l 80 (125)
..-.+|+.++|.....=-.-|..+..+|+.+.....+.-+.-
T Consensus 52 ~sf~~lM~rwn~a~r~l~~aL~sI~dnir~nA~~ye~~E~~n 93 (99)
T 3ogi_B 52 ATSLDTMAQMNQAFRNIVNMLHGVRDGLVRDANNYEQQEQAS 93 (99)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455789999999999999999999999999988777655443
No 146
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=23.89 E-value=1.6e+02 Score=19.42 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 033198 42 LELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKK 76 (125)
Q Consensus 42 ~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~k 76 (125)
-..=+.+-.++..=|..+..++.+|++.+..|.+-
T Consensus 39 ~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdEn 73 (86)
T 3r84_A 39 ESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 73 (86)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44668889999999999999999999999888753
No 147
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=23.83 E-value=2.4e+02 Score=21.29 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 033198 43 ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE----AVISMLDKYVAVLE 112 (125)
Q Consensus 43 ~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE----~~a~~LD~ysk~LE 112 (125)
+-.++|+.+.-.||.-+.....+=...+..=++.|.-|..-=-.+++|+++|..+- .+-.....||++.=
T Consensus 113 kqa~~l~~~~k~RY~~~~~l~~~Y~k~l~~EKeLy~~Lk~k~~~~~~l~eki~~vN~~y~~~~~~FN~yTk~yN 186 (199)
T 2ap3_A 113 KEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLN 186 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988888887777777665433223455555555442 22266677777653
No 148
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.75 E-value=1.3e+02 Score=18.35 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 033198 111 LESKMQSLY 119 (125)
Q Consensus 111 LE~K~k~l~ 119 (125)
||.|+..++
T Consensus 53 Le~kv~~l~ 61 (65)
T 3m0d_C 53 LEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 149
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.60 E-value=1.7e+02 Score=19.64 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=21.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 033198 57 KGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID 88 (125)
Q Consensus 57 ~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID 88 (125)
.++++.|..|.+|...|++.-..|.--+..++
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667777777777777777766666655553
No 150
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=23.16 E-value=2.4e+02 Score=22.87 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 033198 98 EAVISMLDKYVAVL 111 (125)
Q Consensus 98 E~~a~~LD~ysk~L 111 (125)
|+++.+++.|..+.
T Consensus 329 dei~~efErfL~~~ 342 (351)
T 2wam_A 329 DELGAEFERFLAQQ 342 (351)
T ss_dssp ---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66667777776654
No 151
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=23.10 E-value=86 Score=15.99 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033198 15 ELAESLNDLFTSVSAMVKS 33 (125)
Q Consensus 15 ~L~~l~~~~f~~vs~yl~~ 33 (125)
+|++.+..+-++|+.+|.+
T Consensus 5 el~~~~r~v~ekV~~vlaa 23 (26)
T 1xwj_B 5 ELIESARKVSEKVSHVLAA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888889999999988753
No 152
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=23.00 E-value=1.5e+02 Score=18.71 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHH
Q 033198 63 AAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQ 96 (125)
Q Consensus 63 a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~ 96 (125)
...|...+.+|++.+..|...+. .||.||..|..
T Consensus 23 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 60 (83)
T 1sfc_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44566777788888888777663 57777777653
No 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.95 E-value=2.3e+02 Score=20.90 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 033198 109 AVLESKMQSL 118 (125)
Q Consensus 109 k~LE~K~k~l 118 (125)
+.|+.|+..|
T Consensus 93 ~elq~ri~~L 102 (168)
T 3o0z_A 93 GDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 154
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=22.82 E-value=1.4e+02 Score=21.11 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFE 98 (125)
Q Consensus 84 l~qID~Ie~~V~~LE 98 (125)
-++|.+++.+++.+|
T Consensus 23 ~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 23 DLAMADLEQKVLEME 37 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 333444444444443
No 155
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.51 E-value=2.2e+02 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Q 033198 62 VAAGLRVFVEQLKKKSGS-FDEYVQQIDSIEQQVTQF 97 (125)
Q Consensus 62 ~a~~l~~~~~~Ln~ky~~-l~~yl~qID~Ie~~V~~L 97 (125)
+...+...+..++++|.. +.|+...|..++..|..+
T Consensus 35 i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 35 IEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666655 666666666666655543
No 156
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=22.45 E-value=2.5e+02 Score=21.16 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHH
Q 033198 32 KSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE 82 (125)
Q Consensus 32 ~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~ 82 (125)
+.-+..+..=-+.++. +..+|..-...+.++.+.++.++++-.+|+|
T Consensus 99 qTaL~eAQ~AtD~y~~----Ainny~~Ads~~~~lekKvn~aq~kLs~L~P 145 (201)
T 3u0c_A 99 NTLLSETEGLTRDYEK----QINKLKNADSKIKDLENKINQIQTRLSELDP 145 (201)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333334333344443 4457888888888888888888888777765
No 157
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.43 E-value=1.8e+02 Score=19.40 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
.+|+.....+..|..-.+++-.|..+||.+
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777788888888888888888766
No 158
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.16 E-value=1.7e+02 Score=21.48 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYVAVLESK 114 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 114 (125)
-.-+++..|++++..|......|+.+...++..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888888888888877776643
No 159
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.51 E-value=1.5e+02 Score=19.24 Aligned_cols=27 Identities=4% Similarity=0.233 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 82 EYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 82 ~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
-.-.++..|++++..|+.....|+.+.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888887777777653
No 160
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.50 E-value=1.9e+02 Score=19.41 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.++..+...+..|++-=..||.+.+.+-..++.+..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777777888888777777776653
No 161
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.42 E-value=1.2e+02 Score=16.85 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 033198 78 GSFDEYVQQIDSIEQQVTQFEAVI 101 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE~~a 101 (125)
......+..+-.++.+|..|-.++
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455666666666666665443
No 162
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.04 E-value=2.2e+02 Score=21.76 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=35.3
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~ 121 (125)
.......+.+.+-.++.-=+++...+.+++++.+...+++..|..- -+.++.++..|.++
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~E-------n~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAA-------HQEALMKLERLEKE 177 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-------HHHHHHSCC-----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3455667777777777777777777776666666655555555544 33466666665543
No 163
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.89 E-value=1.9e+02 Score=23.16 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 93 QVTQFEAVISMLDKYVAVLESKMQ 116 (125)
Q Consensus 93 ~V~~LE~~a~~LD~ysk~LE~K~k 116 (125)
+|..|+..+..|++=..+||.++.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455444
No 164
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=20.75 E-value=1.9e+02 Score=22.69 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=40.5
Q ss_pred hHHHHHHHHhHHHHHHHhhHHHHHHhHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 40 NTLELLEKMNLRVAEEYKGFGDVAAGLRVF--------VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 40 ~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~--------~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
.-+.-||+=-+....||..+.....+-... .+++|.+.+.|..-...|-+|.++..+=|+-|..|-.=.+-+
T Consensus 42 ~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se~~T~imEs~p~DeeEa~kLlhKh~~~ 121 (267)
T 3tkl_B 42 KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDI 121 (267)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccHHHHHHHHHHhccc
Confidence 345567777788888999988887776654 456777777666666668888888888888899998888888
Q ss_pred HHHHHhhhh
Q 033198 112 ESKMQSLYQ 120 (125)
Q Consensus 112 E~K~k~l~~ 120 (125)
-.|+.+|+.
T Consensus 122 ~~KlaNLQd 130 (267)
T 3tkl_B 122 KAKLANLQV 130 (267)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhHHH
Confidence 888888875
No 165
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.70 E-value=2e+02 Score=19.91 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 84 VQQIDSIEQQVTQFEAVISMLDKYVAVL 111 (125)
Q Consensus 84 l~qID~Ie~~V~~LE~~a~~LD~ysk~L 111 (125)
-.+++.+++++..|+.+...||.....+
T Consensus 86 ~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 86 HFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666655443
No 166
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=20.60 E-value=3e+02 Score=21.32 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 80 FDEYVQQIDSIEQQVTQFEAVISMLDKY 107 (125)
Q Consensus 80 l~~yl~qID~Ie~~V~~LE~~a~~LD~y 107 (125)
|+.|++|+|.|=.++..|-.-+.--..|
T Consensus 222 LE~Y~~q~d~~~~~~~~L~~~I~~TEe~ 249 (261)
T 3rkg_A 222 IETYYTQCDEYVQQSESLIQDIKSTEEI 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877776665555444433
No 167
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=20.57 E-value=2.9e+02 Score=21.18 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 55 EYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYV 108 (125)
Q Consensus 55 kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ys 108 (125)
.|.++...|..|.+-+..+=.--..=.-+|+-|.+|-..+-+|=++|+....+.
T Consensus 92 ~fqel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~ 145 (213)
T 3ajm_A 92 EFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKY 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555555544444455677888999999999999988887763
No 168
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=20.55 E-value=2.2e+02 Score=24.05 Aligned_cols=43 Identities=28% Similarity=0.509 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhh
Q 033198 78 GSFDEYVQQIDSIEQQVTQFE----------AVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 78 ~~l~~yl~qID~Ie~~V~~LE----------~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
..+..||.-||+|.+-+.-|. .+-.-|..-.++||..|+.+=.
T Consensus 25 ~~l~~yL~av~~l~~a~~~~~~~~~~s~~l~~~~~Ll~~a~~~Le~eF~~lL~ 77 (571)
T 2pft_A 25 GRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMT 77 (571)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666555 4667788888999999987643
No 169
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.49 E-value=44 Score=22.78 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Q 033198 76 KSGSFDEYVQQID----SIEQQVTQFEAVISMLDKYVAVL---ESKMQSL 118 (125)
Q Consensus 76 ky~~l~~yl~qID----~Ie~~V~~LE~~a~~LD~ysk~L---E~K~k~l 118 (125)
...+|...+.+|. .+|+.+..+|.-+.-+-..-+.| |.|+..|
T Consensus 35 al~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 35 ALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 25666666666665444444444 3444444
No 170
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.42 E-value=3.3e+02 Score=21.70 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=5.5
Q ss_pred hhHHHHHHHHhHHHHH
Q 033198 39 NNTLELLEKMNLRVAE 54 (125)
Q Consensus 39 ~~d~~LLe~mN~~~s~ 54 (125)
.+|+...-.+-..+..
T Consensus 198 ~e~l~~F~~l~~~T~~ 213 (426)
T 1lrz_A 198 EEELPIFRSFMEDTSE 213 (426)
T ss_dssp GGGHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555544444443
No 171
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.33 E-value=3.9e+02 Score=22.58 Aligned_cols=57 Identities=5% Similarity=0.074 Sum_probs=37.6
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198 50 LRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDK 106 (125)
Q Consensus 50 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ 106 (125)
+....+...++..-+.+++.+..++..-+...+.+.+..+|.+++..||+.+..++.
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666677777666655555677777777777777777776655543
No 172
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.03 E-value=2.1e+02 Score=19.18 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198 81 DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120 (125)
Q Consensus 81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~ 120 (125)
.-+-..|+.++.++..|+.....+-.-...++..++.+++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455666666666666666666666666666665554
Done!