BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033199
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 17 FTVEKSAARGLPSLAKTSFKI-VAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDG 75
+ V + A GLP AKT+ V +GGK D G +GG + G +Q + YGA+ G
Sbjct: 146 YEVCQGAYNGLP--AKTTLCAGVLEGGK---DTCVGDSGGPLICNGQFQGIVSYGAHSCG 200
Query: 76 -------YSPIYNENDW 85
Y+ +++ DW
Sbjct: 201 QGPKPGIYTNVFDYTDW 217
>pdb|2NOC|A Chain A, Solution Structure Of Putative Periplasmic Protein:
Northest Structural Genomics Target Str106
Length = 99
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 30 LAKTSF-KIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDGYSPIYNENDWSPS 88
+ KT F K+ ++ KI T G +D RE + + D+ GA+V + EN +
Sbjct: 25 MKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGT 84
Query: 89 GDVY 92
D+Y
Sbjct: 85 ADIY 88
>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
Length = 312
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 67 DKYGANVDGY-SPIYNENDWSPS 88
DKYG + D + PIY NDW S
Sbjct: 140 DKYGLDFDTWLGPIYQPNDWQTS 162
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 269 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 300
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 270 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,615,024
Number of Sequences: 62578
Number of extensions: 157683
Number of successful extensions: 325
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 10
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)