BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033199
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis
thaliana GN=PSBR PE=1 SV=1
Length = 140
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/140 (75%), Positives = 116/140 (82%), Gaps = 15/140 (10%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMD 57
MAASVM SS++LKPA FTVEK+AARGLPSL A+ SFKIVA G KIKTDKP+G+NG MD
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60
Query: 58 LREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVT 105
LR+GV Y++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT
Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120
Query: 106 LAGLLAGGALLVYNTSALAQ 125
LAG+LAGGALLVYNTSALAQ
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica
campestris GN=PSBR PE=2 SV=1
Length = 141
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/141 (73%), Positives = 115/141 (81%), Gaps = 16/141 (11%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGM 56
MAASVM SS++LKPA FTVEK +ARGLPSL + +SF+IVA G KIKTDKP+GVNG M
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60
Query: 57 DLREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 104
DLR+GV Y+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAV
Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120
Query: 105 TLAGLLAGGALLVYNTSALAQ 125
TLAG+LAGGALLVYNTSALAQ
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana
tabacum GN=PSBR PE=2 SV=1
Length = 136
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/140 (68%), Positives = 111/140 (79%), Gaps = 19/140 (13%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SLKPAPF+VEK+A +GLPSLA++S F++ A G K+KTDKPYG+NG M
Sbjct: 1 MASTVM----SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMS 56
Query: 58 LREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVT 105
LR+GV YQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT
Sbjct: 57 LRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116
Query: 106 LAGLLAGGALLVYNTSALAQ 125
L G+LAGGALLV+NTSALAQ
Sbjct: 117 LVGILAGGALLVFNTSALAQ 136
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum
tuberosum GN=PSBR PE=2 SV=1
Length = 138
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/140 (69%), Positives = 113/140 (80%), Gaps = 17/140 (12%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SSLSLKP FT+EK++ +GLPSLA++S FK+VA G K+KTDKPYG+NG M
Sbjct: 1 MASTVM-SSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMA 58
Query: 58 LREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVT 105
LR+GV YQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT
Sbjct: 59 LRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
Query: 106 LAGLLAGGALLVYNTSALAQ 125
L G+LAGGALLVYNTSALAQ
Sbjct: 119 LVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum
lycopersicum GN=PSBR PE=2 SV=1
Length = 138
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/140 (68%), Positives = 111/140 (79%), Gaps = 17/140 (12%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SSLSLKP FT+EK + +GLPSL ++S FK+VA G K+KTDKPYG+NG M
Sbjct: 1 MASTVM-SSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMA 58
Query: 58 LREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVT 105
LR+GV YQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT
Sbjct: 59 LRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
Query: 106 LAGLLAGGALLVYNTSALAQ 125
L G+LAGGALLVYNTSALAQ
Sbjct: 119 LLGILAGGALLVYNTSALAQ 138
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia
oleracea GN=PSBR PE=2 SV=1
Length = 140
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 108/141 (76%), Gaps = 17/141 (12%)
Query: 1 MAASVMASSLSLKPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGM 56
MA SVM SSLSLKP+ F V+ KSA +GLPSL+++S F + A G KIK DKP G+ GGM
Sbjct: 1 MATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGM 59
Query: 57 DLREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 104
LR+GV YQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAV
Sbjct: 60 KLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAV 119
Query: 105 TLAGLLAGGALLVYNTSALAQ 125
TLAGLLAGGALLVYNTSALAQ
Sbjct: 120 TLAGLLAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare
GN=PSBR PE=3 SV=1
Length = 138
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 96/139 (69%), Gaps = 17/139 (12%)
Query: 1 MAASVMASSLSLKPA--PFTVEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMD 57
M+A VMAS L+LKP+ P +++S G+ A+ S IVAK K ++T +PYG GG+
Sbjct: 1 MSACVMAS-LALKPSSSPL-LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVA 58
Query: 58 LREGV------------YQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVT 105
+EGV YQF DKYGANVDGYSPIY +WSPSGDVY GG TGL +WAVT
Sbjct: 59 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
Query: 106 LAGLLAGGALLVYNTSALA 124
LAG+L GGALLVY+TSALA
Sbjct: 119 LAGILLGGALLVYSTSALA 137
>sp|Q2S9T9|SYI_HAHCH Isoleucine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=ileS PE=3 SV=1
Length = 941
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 32 KTSFKIVAKGGKIKTD-------KP--YGVNGGMDLREGVYQFVDKYGANVDGYSPIYNE 82
KT I+ GKI T KP + V GG L E ++ DK ++D P NE
Sbjct: 160 KTEADIIRALGKIATSGHLQKGYKPVYWSVVGGSALAEAEVEYKDKTSNSIDVSYPAENE 219
Query: 83 ND-WSPSGDVYTGGATGLAIWAVT 105
D S D GA + IW T
Sbjct: 220 QDLLSAFADASGEGAVSIVIWTTT 243
>sp|P77376|YDGJ_ECOLI Uncharacterized oxidoreductase YdgJ OS=Escherichia coli (strain
K12) GN=ydgJ PE=1 SV=2
Length = 346
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDG 75
PFTV S AR L +LAK+ ++++ + D + G+ L EGV V + ++ D
Sbjct: 96 PFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGL-LAEGVLGEVAYFESHFDR 154
Query: 76 YSPIYNENDWS----PSGDVYTGGATGLAIWAVTLAGL 109
+ P + W P ++ A L A+TL GL
Sbjct: 155 FRPQVRDR-WREQGGPGSGIWYDLAPHLLDQAITLFGL 191
>sp|B9DRW6|TRMD_STRU0 tRNA (guanine-N(1)-)-methyltransferase OS=Streptococcus uberis
(strain ATCC BAA-854 / 0140J) GN=trmD PE=3 SV=1
Length = 238
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LSLKPAPF------TVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLR-EGV 62
L+L P F V K+ +GL + +F+ A+ + D+PYG GM LR + +
Sbjct: 6 LTLFPEMFAPLESSIVGKAVEKGLLDIRYHNFRDNAEKARHVDDEPYGGGQGMLLRAQPI 65
Query: 63 YQFVDKYGAN 72
Y +DK AN
Sbjct: 66 YDTIDKIDAN 75
>sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=INO80 PE=3 SV=1
Length = 1387
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 41 GGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDG 75
G KIKTD+ G N +L+ + +DKY A+VDG
Sbjct: 558 GKKIKTDELEGTNADDNLKSNTKEHLDKY-ADVDG 591
>sp|Q95102|NRAM1_BISBI Natural resistance-associated macrophage protein 1 OS=Bison bison
GN=SLC11A1 PE=2 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 71 ANVDGYSPIYNENDWSPSGDVYTGGAT--------GLAIWAVTLAGLLAGG 113
+++ Y+PI+ N+ + + D+Y GG L IWAV GLLA G
Sbjct: 322 SSLQDYAPIFPRNNLTVAVDIYQGGVILGCLFGPAALYIWAV---GLLAAG 369
>sp|Q27946|NRAM1_BUBBU Natural resistance-associated macrophage protein 1 OS=Bubalus
bubalis GN=SLC11A1 PE=2 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 71 ANVDGYSPIYNENDWSPSGDVYTGGAT--------GLAIWAVTLAGLLAGG 113
+++ Y+PI+ N+ + + D+Y GG L IWAV GLLA G
Sbjct: 322 SSLHDYAPIFPRNNLTVAVDIYQGGVILGCLFGPAALYIWAV---GLLAAG 369
>sp|Q27981|NRAM1_BOVIN Natural resistance-associated macrophage protein 1 OS=Bos taurus
GN=SLC11A1 PE=2 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 71 ANVDGYSPIYNENDWSPSGDVYTGGAT--------GLAIWAVTLAGLLAGG 113
+++ Y+PI+ N+ + + D+Y GG L IWAV GLLA G
Sbjct: 322 SSLHDYAPIFPRNNLTVAVDIYQGGVILGCLFGPPALYIWAV---GLLAAG 369
>sp|O13069|VSP2_BOTJA Thrombin-like enzyme KN-BJ 2 OS=Bothrops jararaca PE=1 SV=1
Length = 257
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 17 FTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDGY 76
+TV ++A LP+ ++T + +GGK D G +GG + G +Q + +G++V GY
Sbjct: 170 YTVCRAAYPELPATSRTLCAGILQGGK---DTCVGDSGGPLICNGQFQGIVSWGSDVCGY 226
>sp|Q8UVX1|VSPG_GLOUS Snake venom serine protease gussurobin OS=Gloydius ussuriensis PE=2
SV=1
Length = 260
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 17 FTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDG- 75
+ V ++A GLP+ ++T + KGGK D G +GG + G +Q + +GA+ G
Sbjct: 173 YEVCQAAHGGLPATSRTLCAGILKGGK---DSCKGDSGGPLICNGQFQGIASWGAHPCGQ 229
Query: 76 ------YSPIYNENDW 85
Y+ +++ +W
Sbjct: 230 SLKPGVYTKVFDYTEW 245
>sp|Q02XY0|MURG_LACLS UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=murG PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 25 RGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDGYSPIYNEND 84
LP LAK SFK V G+I D D +E Q+ K N+D I N +
Sbjct: 201 EALPELAKRSFKTVYASGEIYYD---------DYKETFDQY--KENPNLDIRPYINNMTE 249
Query: 85 WSPSGDVYTGGATGLAIWAVTLAGLLA 111
++ G + I VT GL A
Sbjct: 250 LLAKSQLFLGRSGSTTIAEVTALGLPA 276
>sp|A2RJQ4|MURG_LACLM UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=murG PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 25 RGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDGYSPIYNEND 84
LP LAK SFK V G+I D D +E Q+ K N+D I N +
Sbjct: 201 EALPELAKRSFKTVYASGEIYYD---------DYKETFDQY--KENPNLDIRPYINNMTE 249
Query: 85 WSPSGDVYTGGATGLAIWAVTLAGLLA 111
++ G + I VT GL A
Sbjct: 250 LLAKSQLFLGRSGSTTIAEVTALGLPA 276
>sp|P0C5B4|VSPGL_GLOSH Thrombin-like enzyme gloshedobin OS=Gloydius shedaoensis PE=1 SV=2
Length = 260
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 17 FTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGVYQFVDKYGANVDG- 75
+ V ++A GLP+ ++T + KGGK D G +GG + G +Q + +GA+ G
Sbjct: 173 YEVCQAAHGGLPATSRTLCAGILKGGK---DSCKGDSGGPLICNGQFQGIASWGAHPCGQ 229
Query: 76 ------YSPIYNENDW 85
Y+ +++ +W
Sbjct: 230 SLKPGVYTKVFDYTEW 245
>sp|O74910|RAF1_SCHPO Rik1-associated factor 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=raf1 PE=1 SV=1
Length = 638
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 45 KTDKPYGVNGGMDLREGVYQFVDKYGANVDGYSPIYNENDWSPSGDVY-TGGATGLA-IW 102
K DKP + L+ G + + GAN + N W P G+++ TGG+ G+ +W
Sbjct: 519 KPDKPLSL-----LKHGKTKMIHFDGANEEEVDAGINMAQWQPKGNLFVTGGSDGIVKVW 573
Query: 103 AVTL 106
+ L
Sbjct: 574 DLRL 577
>sp|P08625|NIFH2_METTL Nitrogenase iron protein 2 OS=Methanococcus thermolithotrophicus
GN=nifH2 PE=3 SV=2
Length = 292
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 50 YGVNGGMDLREGVYQFVDKYGANVDGYSP 78
Y V G MD + + +F DK GAN+ G P
Sbjct: 194 YNVRGSMDAYDIINEFADKLGANIVGKVP 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,443,038
Number of Sequences: 539616
Number of extensions: 2212824
Number of successful extensions: 3992
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3967
Number of HSP's gapped (non-prelim): 31
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)