Query 033199
Match_columns 125
No_of_seqs 48 out of 50
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 18:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvc_A TRNA 5-methylaminomethy 42.5 7.3 0.00025 32.5 0.9 16 73-88 177-192 (689)
2 1h80_A IOTA-carrageenase; hydr 24.3 27 0.00094 29.3 1.4 16 80-95 387-402 (464)
3 3vyw_A MNMC2; tRNA wobble urid 22.1 19 0.00064 29.1 -0.0 16 73-88 192-207 (308)
4 1nrp_R Receptor based peptide 15.8 48 0.0016 18.8 0.8 13 73-85 12-24 (26)
5 3sbc_A Peroxiredoxin TSA1; alp 15.8 1E+02 0.0035 23.2 2.8 53 31-94 143-202 (216)
6 1n0w_B Breast cancer type 2 su 15.1 31 0.0011 20.8 -0.2 12 37-48 9-20 (35)
7 2yuy_A RHO GTPase activating p 14.4 1E+02 0.0035 20.0 2.2 18 69-86 21-38 (126)
8 1nro_R Receptor based peptide 14.3 60 0.002 18.5 0.9 14 73-86 12-25 (27)
9 3arc_H Photosystem II reaction 14.3 62 0.0021 21.7 1.1 37 88-124 17-54 (65)
10 4g8k_A 2-5A-dependent ribonucl 14.2 58 0.002 23.2 1.0 17 62-78 316-332 (337)
No 1
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=42.46 E-value=7.3 Score=32.52 Aligned_cols=16 Identities=31% Similarity=0.860 Sum_probs=12.3
Q ss_pred CCCccCcccCCCCCCC
Q 033199 73 VDGYSPIYNENDWSPS 88 (125)
Q Consensus 73 VDgYSPIY~p~~ws~~ 88 (125)
.||+||-+|||-|++.
T Consensus 177 lD~f~p~~np~~w~~~ 192 (689)
T 3pvc_A 177 LDGFAPAKNPDMWNEQ 192 (689)
T ss_dssp ECSSCC--CCTTCSHH
T ss_pred ECCCCCCCChhhhhHH
Confidence 6999999999999764
No 2
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=24.27 E-value=27 Score=29.30 Aligned_cols=16 Identities=31% Similarity=0.816 Sum_probs=14.4
Q ss_pred ccCCCCCCCCCeeccC
Q 033199 80 YNENDWSPSGDVYTGG 95 (125)
Q Consensus 80 Y~p~~ws~~GD~Y~gg 95 (125)
++||||+.+|..|.|=
T Consensus 387 ~~~~~~~~~~~~~~~~ 402 (464)
T 1h80_A 387 PTKEQWSKQGQIYIGP 402 (464)
T ss_dssp CCTTTCSSTTSCEEEC
T ss_pred cCCccccCCCcEEeCC
Confidence 6899999999999884
No 3
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=22.10 E-value=19 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.2
Q ss_pred CCCccCcccCCCCCCC
Q 033199 73 VDGYSPIYNENDWSPS 88 (125)
Q Consensus 73 VDgYSPIY~p~~ws~~ 88 (125)
.||+||-=+||-|++.
T Consensus 192 lDgFsP~kNPeLWs~e 207 (308)
T 3vyw_A 192 HDAFSPYKNPELWTLD 207 (308)
T ss_dssp ECCSCTTTSGGGGSHH
T ss_pred eCCCCcccCcccCCHH
Confidence 3999999999999864
No 4
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.85 E-value=48 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred CCCccCcccCCCC
Q 033199 73 VDGYSPIYNENDW 85 (125)
Q Consensus 73 VDgYSPIY~p~~w 85 (125)
-|-|.|.|..+|.
T Consensus 12 ndkyepfwedee~ 24 (26)
T 1nrp_R 12 NDKYEPFWEDEEX 24 (26)
T ss_pred CcccCcccccccc
Confidence 3789999988764
No 5
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=15.81 E-value=1e+02 Score=23.18 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=32.7
Q ss_pred CcceeEEEEecceeee--ccccccCCCccccc-----chhhhhhhhcCCCCCccCcccCCCCCCCCCeecc
Q 033199 31 AKTSFKIVAKGGKIKT--DKPYGVNGGMDLRE-----GVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTG 94 (125)
Q Consensus 31 aR~s~~v~Asg~Kikt--~~P~G~~Ggm~~k~-----Gvyqf~~KyGANVDgYSPIY~p~~ws~~GD~Y~g 94 (125)
.|..| |+-..++|+- -.|..++. ++.+ --.||++|+|. -+|-.|.|..|+-+-
T Consensus 143 ~R~tF-iID~~G~Ir~~~v~~~~~gr--n~dEiLr~l~AlQ~~~~~~~--------~~Pa~W~~G~~~i~p 202 (216)
T 3sbc_A 143 LRGLF-IIDPKGVIRHITINDLPVGR--NVDEALRLVEAFQWTDKNGT--------VLPCNWTPGAATIKP 202 (216)
T ss_dssp CEEEE-EECTTSBEEEEEEECTTBCC--CHHHHHHHHHHHHHHHHHCC--------BBCTTCCTTSCCBCC
T ss_pred eeEEE-EECCCCeEEEEEEcCCCCCC--CHHHHHHHHHHhhhHhhcCC--------CcCCCCCCCCceecC
Confidence 36777 4445555543 33433332 3333 67899999973 689999998776543
No 6
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=15.12 E-value=31 Score=20.83 Aligned_cols=12 Identities=42% Similarity=0.490 Sum_probs=9.6
Q ss_pred EEEecceeeecc
Q 033199 37 IVAKGGKIKTDK 48 (125)
Q Consensus 37 v~Asg~Kikt~~ 48 (125)
-+|||+||++.|
T Consensus 9 hTASGKkv~Iak 20 (35)
T 1n0w_B 9 HTASGKKVKIAK 20 (35)
T ss_dssp EETTSCBCCCCH
T ss_pred eecCCcEEEehH
Confidence 478999988876
No 7
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.41 E-value=1e+02 Score=20.03 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.8
Q ss_pred hcCCCCCccCcccCCCCC
Q 033199 69 YGANVDGYSPIYNENDWS 86 (125)
Q Consensus 69 yGANVDgYSPIY~p~~ws 86 (125)
||.++|+|+--++|++..
T Consensus 21 ~Gf~l~~~t~y~~~~~~~ 38 (126)
T 2yuy_A 21 FGFTLRHFIVYPPESAIQ 38 (126)
T ss_dssp CSCCBCCCCCCCCSSCCC
T ss_pred cceeecCccccCCHHHHH
Confidence 688999999999988886
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=14.31 E-value=60 Score=18.50 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.3
Q ss_pred CCCccCcccCCCCC
Q 033199 73 VDGYSPIYNENDWS 86 (125)
Q Consensus 73 VDgYSPIY~p~~ws 86 (125)
-|-|.|.|..+|=.
T Consensus 12 ndkyepfwedeekn 25 (27)
T 1nro_R 12 NDKYEPFWEDEEKN 25 (27)
T ss_pred CcccCccccchhhc
Confidence 37889999877643
No 9
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=14.29 E-value=62 Score=21.68 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCCeecc-ChhHHHHHHHHHHHHhhhceeeeeeccccc
Q 033199 88 SGDVYTG-GATGLAIWAVTLAGLLAGGALLVYNTSALA 124 (125)
Q Consensus 88 ~GD~Y~g-g~~gL~~wA~tl~glL~~Gallvy~TSaLa 124 (125)
-|.+=-| |||-+..-+..|..+...=.|-|||.|-|-
T Consensus 17 yGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNsSvlL 54 (65)
T 3arc_H 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (65)
T ss_dssp TTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cCcccCCccChhHHHHHHHHHHHHHHHHHHHhCcceee
Confidence 3444333 788888777777777777778899998763
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=14.20 E-value=58 Score=23.17 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=7.9
Q ss_pred hhhhhhhhcCCCCCccC
Q 033199 62 VYQFVDKYGANVDGYSP 78 (125)
Q Consensus 62 vyqf~~KyGANVDgYSP 78 (125)
+-++--++|||||-..|
T Consensus 316 iv~~Ll~~GA~~d~~~p 332 (337)
T 4g8k_A 316 LVKVLLSHGAKEDFHPP 332 (337)
T ss_dssp HHHHHHHTTCCC-----
T ss_pred HHHHHHHCcCCCCCCCC
Confidence 45566677777775544
Done!