Query 033199
Match_columns 125
No_of_seqs 48 out of 50
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 18:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 29.7 8.2 0.0006 24.2 1.0 24 61-84 39-62 (108)
2 d1xcca_ c.47.1.10 (A:) 1-Cys p 27.8 15 0.0011 26.0 2.2 56 26-92 122-184 (219)
3 d1d5ra1 b.7.1.1 (A:188-351) Pt 20.8 42 0.0031 21.9 3.4 40 13-52 2-45 (141)
4 d2hqsa1 b.68.4.1 (A:163-431) T 16.8 11 0.00078 23.7 -0.5 10 84-93 45-54 (269)
5 d1wdka2 a.100.1.3 (A:621-715) 14.0 12 0.00084 23.3 -0.9 26 60-85 49-82 (95)
6 d2axtz1 f.17.5.1 (Z:1-62) Phot 13.8 17 0.0013 22.5 -0.1 23 81-106 29-51 (62)
7 d2zcta1 c.47.1.10 (A:6-242) Pe 13.7 72 0.0052 22.5 3.3 49 31-88 120-173 (237)
8 d1mk0a_ d.226.1.1 (A:) Homing 13.1 15 0.0011 21.8 -0.6 12 88-99 13-24 (97)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 12.9 28 0.002 26.0 0.9 21 40-60 45-66 (252)
10 d1w1oa1 d.58.32.4 (A:246-534) 11.5 22 0.0016 27.0 -0.2 26 61-86 231-257 (289)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=29.73 E-value=8.2 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred chhhhhhhhcCCCCCccCcccCCC
Q 033199 61 GVYQFVDKYGANVDGYSPIYNEND 84 (125)
Q Consensus 61 Gvyqf~~KyGANVDgYSPIY~p~~ 84 (125)
-+++.-.++|++|.-|-|..++.+
T Consensus 39 ~ii~~L~~~g~~v~iyDP~v~~~~ 62 (108)
T d1dlja3 39 DVIDILKSKDIKIIIYEPMLNKLE 62 (108)
T ss_dssp HHHHHHHTSSCEEEEECTTCSCCC
T ss_pred HHHHHHhccccceeeecCCcChhH
Confidence 578888899999999999887544
No 2
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=27.77 E-value=15 Score=25.99 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCCCCCcceeEEEEecceee--eccccccCCCccccc-----chhhhhhhhcCCCCCccCcccCCCCCCCCCee
Q 033199 26 GLPSLAKTSFKIVAKGGKIK--TDKPYGVNGGMDLRE-----GVYQFVDKYGANVDGYSPIYNENDWSPSGDVY 92 (125)
Q Consensus 26 glp~laR~s~~v~Asg~Kik--t~~P~G~~Ggm~~k~-----Gvyqf~~KyGANVDgYSPIY~p~~ws~~GD~Y 92 (125)
|.+-..|..| |+-..++|+ ...|..++. ++.+ --.|+++|+| +-+|-+|.|..++-
T Consensus 122 ~~~~~~R~tF-iIDp~g~Ir~~~~~~~~~gr--~~~EiLr~l~aLQ~~~~~~--------~~~PanW~~G~~~~ 184 (219)
T d1xcca_ 122 GLPLTCRCLF-FISPEKKIKATVLYPATTGR--NAHEILRVLKSLQLTYTTP--------VATPVNWNEGDKCC 184 (219)
T ss_dssp SCEEECEEEE-EECTTSBEEEEEEECTTBCC--CHHHHHHHHHHHHHHHHSS--------EEBCTTCCTTSCEE
T ss_pred ccceeeeeeE-EEcCcceEEEEEEeCCCccc--CHHHHHHHHHHHHHHHhCC--------CCcCCCCCCCCcee
Confidence 3444457888 555555554 344555543 3333 5589999985 47899999866653
No 3
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=42 Score=21.94 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=28.4
Q ss_pred cCCCcccccccccCCCCCC----cceeEEEEecceeeecccccc
Q 033199 13 KPAPFTVEKSAARGLPSLA----KTSFKIVAKGGKIKTDKPYGV 52 (125)
Q Consensus 13 kps~~~~~~~~~~glp~la----R~s~~v~Asg~Kikt~~P~G~ 52 (125)
||.+..+..-.++++|... |+-|+|...+.||-|++++..
T Consensus 2 ~P~~L~L~~I~l~~vP~f~~ggCrP~~~I~~~~~~v~ts~~~~~ 45 (141)
T d1d5ra1 2 RPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPT 45 (141)
T ss_dssp CCCEEEEEEEEESSCCCSBTTBCCEEEEEEETTEEEEECCSSCS
T ss_pred CCEeEEEEEEEEECCCccCCCeeEEEEEEEcCCeEEEecCcEeE
Confidence 5666666666677777764 577888776669988887654
No 4
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.84 E-value=11 Score=23.67 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.2
Q ss_pred CCCCCCCeec
Q 033199 84 DWSPSGDVYT 93 (125)
Q Consensus 84 ~ws~~GD~Y~ 93 (125)
.|||+|..-+
T Consensus 45 ~wSPDGk~IA 54 (269)
T d2hqsa1 45 AWSPDGSKLA 54 (269)
T ss_dssp EECTTSSEEE
T ss_pred EECCCCCEEE
Confidence 5888888643
No 5
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=14.04 E-value=12 Score=23.33 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=17.8
Q ss_pred cchhhhhhhhcCCC--------CCccCcccCCCC
Q 033199 60 EGVYQFVDKYGANV--------DGYSPIYNENDW 85 (125)
Q Consensus 60 ~Gvyqf~~KyGANV--------DgYSPIY~p~~w 85 (125)
.|.++++|.+|..+ ..|.|.|.|.+|
T Consensus 49 gGp~~~~D~~G~~~~~~~~~~l~~~g~r~~p~~~ 82 (95)
T d1wdka2 49 GGALRYIDSIGVAEFVALADQYAELGALYHPTAK 82 (95)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHTGGGCGGGCCCHH
T ss_pred CcHHHHHHHHCHHHHHHHHHHHHhhCCCCCCCHH
Confidence 38999999999542 346677776543
No 6
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.78 E-value=17 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=13.8
Q ss_pred cCCCCCCCCCeeccChhHHHHHHHHH
Q 033199 81 NENDWSPSGDVYTGGATGLAIWAVTL 106 (125)
Q Consensus 81 ~p~~ws~~GD~Y~gg~~gL~~wA~tl 106 (125)
+||+|+++-..--. |..+|.+++
T Consensus 29 SP~gW~~sK~lvfs---G~~~W~~LV 51 (62)
T d2axtz1 29 SPQDWDRSKQLIFL---GSGLWIALV 51 (62)
T ss_dssp CCTTTTHHHHHHHH---HHHHHHHHH
T ss_pred CCCcccccCceEEE---chhHHHHHH
Confidence 68999987443222 355776543
No 7
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}
Probab=13.71 E-value=72 Score=22.46 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred CcceeEEEEecceeeeccccccCCCccccc-----chhhhhhhhcCCCCCccCcccCCCCCCC
Q 033199 31 AKTSFKIVAKGGKIKTDKPYGVNGGMDLRE-----GVYQFVDKYGANVDGYSPIYNENDWSPS 88 (125)
Q Consensus 31 aR~s~~v~Asg~Kikt~~P~G~~Ggm~~k~-----Gvyqf~~KyGANVDgYSPIY~p~~ws~~ 88 (125)
.|..| |+...++|+-..-+..+-|=++.+ --.|+++|+| +-+|-+|.|+
T Consensus 120 ~RatF-IIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ~~~~~~--------~~~Pa~W~~~ 173 (237)
T d2zcta1 120 VRGVF-IVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLK--------RAVPADWPNN 173 (237)
T ss_dssp CCEEE-EECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHT--------CBBCTTTTSB
T ss_pred eeeeE-EECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHhhhccCC--------cCCcCCCCCC
Confidence 46677 666767776554333333334333 5578888885 5689999883
No 8
>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=13.05 E-value=15 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=8.9
Q ss_pred CCCeeccChhHH
Q 033199 88 SGDVYTGGATGL 99 (125)
Q Consensus 88 ~GD~Y~gg~~gL 99 (125)
+|..|.|-++.|
T Consensus 13 ngk~YIG~t~nl 24 (97)
T d1mk0a_ 13 NNKVYVGSAKDF 24 (97)
T ss_dssp TCCEEEEEESSH
T ss_pred CCeEEEEEeCcH
Confidence 577888877765
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=12.94 E-value=28 Score=26.02 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.4
Q ss_pred ecc-eeeeccccccCCCccccc
Q 033199 40 KGG-KIKTDKPYGVNGGMDLRE 60 (125)
Q Consensus 40 sg~-Kikt~~P~G~~Ggm~~k~ 60 (125)
.++ |---|+|||=|-||-++.
T Consensus 45 ~dkhr~VDD~PyGGGpGMVmk~ 66 (252)
T d1uala_ 45 FDKHKTVDDRPYGGGPGMLMMV 66 (252)
T ss_dssp CSTTCCCEECCTTCCSCCEECH
T ss_pred CCCCcCcCCCcCCCCCcceeec
Confidence 344 444589999999999987
No 10
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}
Probab=11.53 E-value=22 Score=27.04 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.8
Q ss_pred chhhhhhhhcCCCCCccCcccC-CCCC
Q 033199 61 GVYQFVDKYGANVDGYSPIYNE-NDWS 86 (125)
Q Consensus 61 Gvyqf~~KyGANVDgYSPIY~p-~~ws 86 (125)
=.++|+++.|.++--|=|.|+. +||.
T Consensus 231 ~il~~c~~aG~~~k~yl~~~~t~~dW~ 257 (289)
T d1w1oa1 231 RILRFCDLAGIQYKTYLARHTDRSDWV 257 (289)
T ss_dssp HHHHHHHHTTCCCEESSCCCSSHHHHH
T ss_pred HHHHHHHHcCCcceEeCCCCCCHHHHH
Confidence 7899999999999999999975 6674
Done!