BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033200
MAATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKG
IFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGER
LGFLA

High Scoring Gene Products

Symbol, full name Information P value
PGR5
proton gradient regulation 5 		protein from Arabidopsis thaliana 6.8e-40

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033200
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2058974 - symbol:PGR5 "proton gradient regulat...   425  6.8e-40   1


>TAIR|locus:2058974 [details] [associations]
            symbol:PGR5 "proton gradient regulation 5" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009055 "electron carrier activity" evidence=IMP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009773 "photosynthetic
            electron transport in photosystem I" evidence=RCA;IMP] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009414
            "response to water deprivation" evidence=IMP] [GO:0009644 "response
            to high light intensity" evidence=RCA;IMP] [GO:0009637 "response to
            blue light" evidence=RCA] [GO:0009744 "response to sucrose
            stimulus" evidence=RCA] [GO:0010114 "response to red light"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0010218 "response to far red light" evidence=RCA]
            [GO:0010117 "photoprotection" evidence=IMP] [GO:0071484 "cellular
            response to light intensity" evidence=IMP] EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009055 GO:GO:0009414 GO:GO:0009644
            GO:GO:0009535 GO:GO:0009773 EMBL:AC006220 GO:GO:0010117
            EMBL:AF375454 EMBL:AY060546 EMBL:AY085613 IPI:IPI00518625
            PIR:G84470 RefSeq:NP_565327.1 UniGene:At.27446 IntAct:Q9SL05
            STRING:Q9SL05 PaxDb:Q9SL05 PRIDE:Q9SL05 EnsemblPlants:AT2G05620.1
            GeneID:815111 KEGG:ath:AT2G05620 TAIR:At2g05620 eggNOG:NOG14675
            HOGENOM:HOG000242985 InParanoid:Q9SL05 OMA:GWGSSIS PhylomeDB:Q9SL05
            ProtClustDB:CLSN2687996 Genevestigator:Q9SL05 GO:GO:0071484
            Uniprot:Q9SL05
        Length = 133

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 91/135 (67%), Positives = 109/135 (80%)

Query:     1 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSV--PN-VRVARP-IRMQP 50
             MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V  P   RV+R  IR  P
Sbjct:     1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVP 58

Query:    51 MMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGL 110
             MM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGL
Sbjct:    59 MMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGL 118

Query:   111 IRLAKKNGERLGFLA 125
             IRLAKKNGERLGFLA
Sbjct:   119 IRLAKKNGERLGFLA 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.47    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.50u 0.11s 11.61t   Elapsed:  00:00:01
  Total cpu time:  11.50u 0.11s 11.61t   Elapsed:  00:00:01
  Start:  Fri May 10 18:12:05 2013   End:  Fri May 10 18:12:06 2013

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