BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033200
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SL05|PGR5_ARATH Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis
           thaliana GN=PGR5 PE=1 SV=1
          Length = 133

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 108/135 (80%), Gaps = 12/135 (8%)

Query: 1   MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVP---NVRVAR-PIRMQP 50
           MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V      RV+R  IR  P
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVP 58

Query: 51  MMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGL 110
           MM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGL
Sbjct: 59  MMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGL 118

Query: 111 IRLAKKNGERLGFLA 125
           IRLAKKNGERLGFLA
Sbjct: 119 IRLAKKNGERLGFLA 133


>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
           SV=1
          Length = 549

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 62  FAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITE 95
           F   V LTR I G+K F+Q+RG  I    +V T+
Sbjct: 416 FRHCVRLTREIFGQKAFDQYRGPEIQPGERVQTD 449


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,396,751
Number of Sequences: 539616
Number of extensions: 1639837
Number of successful extensions: 3427
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3424
Number of HSP's gapped (non-prelim): 4
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)