Query 033200
Match_columns 125
No_of_seqs 45 out of 47
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 18:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eye_A PTS system N-acetylgala 70.3 2.7 9.4E-05 31.4 2.7 37 88-124 18-66 (168)
2 1nrz_A PTS system, sorbose-spe 65.7 2.7 9.1E-05 31.1 1.8 37 88-124 13-60 (164)
3 1tc3_C Protein (TC3 transposas 59.3 5.1 0.00017 20.9 1.7 28 92-119 23-50 (51)
4 1vsq_C Mannose-specific phosph 57.8 2.9 9.8E-05 30.9 0.7 37 88-124 16-63 (165)
5 1pdn_C Protein (PRD paired); p 57.5 12 0.00041 23.2 3.5 39 80-118 21-61 (128)
6 1ble_A Fructose permease; phos 54.7 2.6 9E-05 31.1 0.0 37 88-124 14-61 (163)
7 2k4n_A Protein PF0246; beta-sh 54.2 6.1 0.00021 28.8 1.9 18 89-106 2-19 (111)
8 3goe_A DNA repair protein RAD6 50.1 7.9 0.00027 27.0 1.9 19 89-107 32-50 (82)
9 3lfj_A Manxb, phosphotransfera 48.1 3.4 0.00012 31.5 -0.3 37 88-124 34-81 (187)
10 1k78_A Paired box protein PAX5 45.9 34 0.0012 22.6 4.5 41 79-119 35-77 (149)
11 2rn7_A IS629 ORFA; helix, all 41.5 55 0.0019 20.7 4.8 29 91-119 31-59 (108)
12 2jn6_A Protein CGL2762, transp 36.0 29 0.00098 21.7 2.7 28 92-119 25-52 (97)
13 3e21_A HFAF1, FAS-associated f 33.9 40 0.0014 20.5 3.1 23 88-110 4-28 (45)
14 3l34_A Sensor protein; two-com 30.7 27 0.00093 25.8 2.3 23 75-97 98-120 (130)
15 1v92_A NSFL1 cofactor P47; 3-h 30.4 50 0.0017 18.6 2.9 25 88-112 4-28 (46)
16 3p3v_A PTS system, N-acetylgal 30.1 12 0.00041 27.7 0.2 36 88-124 17-63 (163)
17 2h09_A Transcriptional regulat 29.9 61 0.0021 21.4 3.7 67 52-118 16-82 (155)
18 2heo_A Z-DNA binding protein 1 28.7 69 0.0023 19.4 3.6 27 93-119 28-54 (67)
19 2zc2_A DNAD-like replication p 25.7 68 0.0023 19.8 3.2 36 85-120 18-53 (78)
20 2ou3_A Tellurite resistance pr 23.6 87 0.003 21.7 3.7 26 91-116 117-142 (161)
21 2glo_A Brinker CG9653-PA; prot 22.9 59 0.002 18.9 2.3 24 93-116 28-51 (59)
22 3hy0_A Alanyl-tRNA synthetase; 22.1 81 0.0028 27.3 3.9 63 59-122 256-324 (441)
23 3hot_A Transposable element ma 21.5 1.4E+02 0.0049 21.9 4.7 39 79-118 9-56 (345)
24 2pjp_A Selenocysteine-specific 21.2 1E+02 0.0036 20.4 3.6 27 93-119 23-49 (121)
No 1
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=70.31 E-value=2.7 Score=31.39 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHc-Ccccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKN-GERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~N-G~kLGfL 124 (125)
+|-||++.+++.++++ .+.||.+++.|.-. |-++-|+
T Consensus 18 IHGQVat~W~k~~~~~~IiVvnD~vA~D~~~k~~lkmA~P~~gvk~~i~ 66 (168)
T 3eye_A 18 VHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFF 66 (168)
T ss_dssp TTTHHHHHHHHHHTCSEEEEECHHHHHSGGGGHHHHHHHHHHTCEEEEE
T ss_pred cchhhhheeccccCCCEEEEEcccccCCHHHHHHHHhcCCCCCCeEEEE
Confidence 6999999999999986 37899999999988 8877654
No 2
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=65.66 E-value=2.7 Score=31.14 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHcCcccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKNGERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~NG~kLGfL 124 (125)
+|-||++..++.++++ .+.||.+++.|.-.|-++-++
T Consensus 13 IHGQV~t~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~ 60 (164)
T 1nrz_A 13 IHGQVTTVWSKVANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVV 60 (164)
T ss_dssp SCHHHHHHHHHHHTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEE
T ss_pred cchhheeeeccccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEE
Confidence 6999999999999985 457999999999888777554
No 3
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.31 E-value=5.1 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 92 VITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 92 vIt~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
-+.+.++.+|++..+-..+++..++.|.
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 4678999999999999999988777664
No 4
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=57.83 E-value=2.9 Score=30.95 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHcCcccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKNGERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~NG~kLGfL 124 (125)
+|-||++.+++.++++ .+.||.+++.|.-.|-++-|+
T Consensus 16 IHGQV~t~W~~~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~ 63 (165)
T 1vsq_C 16 IHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVV 63 (165)
T ss_dssp SCTTHHHHHHHHTTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEE
T ss_pred cchheeeeeccccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEE
Confidence 6999999999999985 457999999998888777554
No 5
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=57.53 E-value=12 Score=23.25 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=31.1
Q ss_pred hhhhhHHHHhHH--HHHHHHHHhCCChhhhhhHHHHHHHcC
Q 033200 80 QFRGKAIALHSQ--VITEFCKSIGADAKQRQGLIRLAKKNG 118 (125)
Q Consensus 80 klRGKaIaLHSQ--vIt~FC~~iG~d~k~RQ~LIRlAk~NG 118 (125)
..|-+++.++.+ -+.+.|+.+|++..+-..+++..++.|
T Consensus 21 ~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g 61 (128)
T 1pdn_C 21 NIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETG 61 (128)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 467777777643 467899999999999999999887766
No 6
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=54.71 E-value=2.6 Score=31.08 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHcCcccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKNGERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~NG~kLGfL 124 (125)
+|-||++.+++.++++ .+.||.+++.|.-.|-++-|+
T Consensus 14 IHGQV~t~W~~~~~~~~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i~ 61 (163)
T 1ble_A 14 IHGQILTRWIKVHAADRIIVVSDDIAQDEMRKTLILSVAPSNVKASAV 61 (163)
T ss_dssp SCTTHHHHHHHHHTCSEEEEECHHHHHCHHHHHHHHTSSCTTSEEEEE
T ss_pred cchhheeeeccccCCCEEEEeCccccCCHHHHHHHHhhCCCCCeEEEE
Confidence 6999999999999986 357999999998888776553
No 7
>2k4n_A Protein PF0246; beta-sheet, alpha-helix, mobIle loop, structural genomics, PSI-2, protein structure initiative; NMR {Pyrococcus furiosus}
Probab=54.17 E-value=6.1 Score=28.83 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhCCChhh
Q 033200 89 HSQVITEFCKSIGADAKQ 106 (125)
Q Consensus 89 HSQvIt~FC~~iG~d~k~ 106 (125)
|+.||++|.+.||+|-..
T Consensus 2 n~evikefledigad~~e 19 (111)
T 2k4n_A 2 NSEVIKEFLEDIGEDYIE 19 (111)
T ss_dssp CHHHHHHHHHHHTCCCEE
T ss_pred chHHHHHHHHHhCcccee
Confidence 789999999999998543
No 8
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=50.07 E-value=7.9 Score=27.03 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhCCChhhh
Q 033200 89 HSQVITEFCKSIGADAKQR 107 (125)
Q Consensus 89 HSQvIt~FC~~iG~d~k~R 107 (125)
=+|+|+.||+.-|++..++
T Consensus 32 v~kLi~ayc~~~~I~~~~~ 50 (82)
T 3goe_A 32 VKDLIKRYCTEVKISFHER 50 (82)
T ss_dssp HHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHcCCCcCce
Confidence 3799999999999998743
No 9
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=48.08 E-value=3.4 Score=31.48 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHcCcccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKNGERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~NG~kLGfL 124 (125)
+|-||++.+++.++++ .+.||.+++.|.-.|-++-++
T Consensus 34 IHGQVat~W~k~~~~~~IiVvnD~vA~D~~~k~~lkmA~P~gvk~~i~ 81 (187)
T 3lfj_A 34 IHGQVMTRWMKGFPEASIVIIDDELAVDEFMKNIYTMAAPPGVKVKVF 81 (187)
T ss_dssp SCTTHHHHHHTTCTTCEEEEECHHHHHCHHHHHHHHHTSCTTCCEEEE
T ss_pred hhhhhhheeccccCCCEEEEECccccCCHHHHHHHHHhccCCCeEEEE
Confidence 6999999999999986 378999999999888776553
No 10
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.90 E-value=34 Score=22.61 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=32.6
Q ss_pred hhhhhhHHHHhHH--HHHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 79 NQFRGKAIALHSQ--VITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 79 NklRGKaIaLHSQ--vIt~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
...|-+++.++.+ -+.+.|+.+|++..+-.++++..++.|.
T Consensus 35 ~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~ 77 (149)
T 1k78_A 35 DVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77 (149)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 3467777777743 4788999999999999999998887764
No 11
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.48 E-value=55 Score=20.68 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 91 QVITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 91 QvIt~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
..+.+.|+.+|+++.+-.++++..+.+|.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 47899999999999999999999887663
No 12
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.97 E-value=29 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 92 VITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 92 vIt~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
-+.+.|+.+|++..+-.++++..+..|.
T Consensus 25 s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 25 SLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred hHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 5889999999999888899988877664
No 13
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=33.95 E-value=40 Score=20.46 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHhCCCh--hhhhhH
Q 033200 88 LHSQVITEFCKSIGADA--KQRQGL 110 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d~--k~RQ~L 110 (125)
-|.+.|.+||.--|+|. ..|+-|
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~L 28 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLL 28 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 37899999999999985 455544
No 14
>3l34_A Sensor protein; two-component sensor,structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Pseudomonas aeruginosa} PDB: 3kkb_A 3n24_A
Probab=30.74 E-value=27 Score=25.84 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.9
Q ss_pred cchhhhhhhhHHHHhHHHHHHHH
Q 033200 75 KKRFNQFRGKAIALHSQVITEFC 97 (125)
Q Consensus 75 ~krfNklRGKaIaLHSQvIt~FC 97 (125)
.+.||+||.-.|-+|-|++...-
T Consensus 98 ~e~Fn~lRn~L~d~q~~al~~I~ 120 (130)
T 3l34_A 98 SEAFNGLRLRLQDLQQLALAGIS 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999987653
No 15
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=30.37 E-value=50 Score=18.58 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHhCCChhhhhhHHH
Q 033200 88 LHSQVITEFCKSIGADAKQRQGLIR 112 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d~k~RQ~LIR 112 (125)
-|.+.|.+||.--|++..+-+....
T Consensus 4 ~~~~~i~~F~~iTg~~~~~A~~~L~ 28 (46)
T 1v92_A 4 ERQDALREFVAVTGAEEDRARFFLE 28 (46)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3778999999999998776555543
No 16
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=30.09 E-value=12 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHhCCC-----------hhhhhhHHHHHHHcCcccccc
Q 033200 88 LHSQVITEFCKSIGAD-----------AKQRQGLIRLAKKNGERLGFL 124 (125)
Q Consensus 88 LHSQvIt~FC~~iG~d-----------~k~RQ~LIRlAk~NG~kLGfL 124 (125)
+|-| ++.+++.++++ .+.||.+++.|.-.|-++-++
T Consensus 17 IHGQ-~~~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i~ 63 (163)
T 3p3v_A 17 IHGQ-GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFF 63 (163)
T ss_dssp GGST-HHHHHHHTTCSEEEEECHHHHHCHHHHHHHGGGSCTTSEEEEE
T ss_pred hhhh-hhhhhhhcCCCEEEEEcccccCCHHHHHHHHhhCCCCceEEEE
Confidence 6999 99999999986 368999999998888776553
No 17
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.91 E-value=61 Score=21.42 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=37.8
Q ss_pred ccCCCCCCccchhhhhHHHhhhccchhhhhhhhHHHHhHHHHHHHHHHhCCChhhhhhHHHHHHHcC
Q 033200 52 MGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 118 (125)
Q Consensus 52 m~n~~~~~G~FaPlVv~~r~ilG~krfNklRGKaIaLHSQvIt~FC~~iG~d~k~RQ~LIRlAk~NG 118 (125)
|.+.....-+|.++--..|.-+=+.-+++|.--.-.-....+++.++.+|++...-...|+.-.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~G 82 (155)
T 2h09_A 16 LVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMG 82 (155)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 3444445567887766665555555555554332222223568999999999887777777666554
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=28.71 E-value=69 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 93 ITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 93 It~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
.++.++.+|++...-.++|+.-++.|-
T Consensus 28 ~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 678999999999999999999988874
No 19
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=25.70 E-value=68 Score=19.82 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHhCCChhhhhhHHHHHHHcCcc
Q 033200 85 AIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGER 120 (125)
Q Consensus 85 aIaLHSQvIt~FC~~iG~d~k~RQ~LIRlAk~NG~k 120 (125)
.-..-.+.|.++++..|.++..-.-+|+.|-.||++
T Consensus 18 ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~ 53 (78)
T 2zc2_A 18 LSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKT 53 (78)
T ss_dssp CCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 445677899999999999999999999999877754
No 20
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=23.63 E-value=87 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCChhhhhhHHHHHHH
Q 033200 91 QVITEFCKSIGADAKQRQGLIRLAKK 116 (125)
Q Consensus 91 QvIt~FC~~iG~d~k~RQ~LIRlAk~ 116 (125)
++|.++|+.+|++..+...+...+..
T Consensus 117 ~~L~~iA~~Lgls~~~~~~l~~~~~~ 142 (161)
T 2ou3_A 117 AKIRKMATILGIKEEIVDQLEQLYYY 142 (161)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57999999999999998888776553
No 21
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=22.85 E-value=59 Score=18.86 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhHHHHHHH
Q 033200 93 ITEFCKSIGADAKQRQGLIRLAKK 116 (125)
Q Consensus 93 It~FC~~iG~d~k~RQ~LIRlAk~ 116 (125)
+.+.|+.+|+++.+-.++++..++
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~~ 51 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCESN 51 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 789999999999888888887654
No 22
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=22.06 E-value=81 Score=27.29 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=51.0
Q ss_pred CccchhhhhHHHhhhccchhhhhhhhHHHHhHHHHHHHHHHhCCChhh------hhhHHHHHHHcCcccc
Q 033200 59 KGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQ------RQGLIRLAKKNGERLG 122 (125)
Q Consensus 59 ~G~FaPlVv~~r~ilG~krfNklRGKaIaLHSQvIt~FC~~iG~d~k~------RQ~LIRlAk~NG~kLG 122 (125)
.-+|.||+-.+..+.|.+..+...=++||=|...++ |+-.=|+-+.. -.+|||-|-..|++||
T Consensus 256 tDlf~pii~~i~~~~g~~~~~~~s~rvIADH~R~~~-f~iaDGv~PsNeGrGYVLRRilRRAvr~g~~Lg 324 (441)
T 3hy0_A 256 IDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCA-FLIADGVMPSNENRGYVLRRIIRRAVRHGNMLG 324 (441)
T ss_dssp SHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHH-HHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhCCCccccceeEEecchHHHHH-HHHhcCcccCCCCcchhHHHHHHHHHHHHHHhC
Confidence 358999999999999988767778899999999875 77777876652 3468888888888887
No 23
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=21.52 E-value=1.4e+02 Score=21.86 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred hhhhhhHHHHh------HHHHHHHHHHhC---CChhhhhhHHHHHHHcC
Q 033200 79 NQFRGKAIALH------SQVITEFCKSIG---ADAKQRQGLIRLAKKNG 118 (125)
Q Consensus 79 NklRGKaIaLH------SQvIt~FC~~iG---~d~k~RQ~LIRlAk~NG 118 (125)
+++|...+.++ .++...+|+..| ++..+-+.+++..++ |
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g 56 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-G 56 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-C
Confidence 35676666665 468889999999 999999999998775 5
No 24
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.20 E-value=1e+02 Score=20.36 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHhCCChhhhhhHHHHHHHcCc
Q 033200 93 ITEFCKSIGADAKQRQGLIRLAKKNGE 119 (125)
Q Consensus 93 It~FC~~iG~d~k~RQ~LIRlAk~NG~ 119 (125)
+.+.++.+|+|.+.-+.+++.+.+.|+
T Consensus 23 ~~~la~~~~~~~~~~~~~l~~l~~~G~ 49 (121)
T 2pjp_A 23 VRDLAKETGTDEQAMRLTLRQAAQQGI 49 (121)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 458999999999999999999998885
Done!