Query 033201
Match_columns 125
No_of_seqs 167 out of 1278
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0512 PabA Anthranilate/para 100.0 5.9E-28 1.3E-32 176.1 12.0 100 24-123 1-100 (191)
2 PRK08007 para-aminobenzoate sy 100.0 1.1E-27 2.5E-32 175.1 12.1 98 26-123 1-98 (187)
3 PRK06774 para-aminobenzoate sy 99.9 2.4E-27 5.2E-32 173.5 11.9 98 26-123 1-98 (191)
4 PRK07649 para-aminobenzoate/an 99.9 4.7E-27 1E-31 173.0 12.0 98 26-123 1-98 (195)
5 TIGR00566 trpG_papA glutamine 99.9 1.5E-26 3.4E-31 169.2 12.5 97 26-122 1-97 (188)
6 PLN02335 anthranilate synthase 99.9 3.6E-26 7.9E-31 171.3 12.9 102 21-122 15-116 (222)
7 PRK05670 anthranilate synthase 99.9 3.6E-26 7.8E-31 167.0 12.5 98 26-123 1-98 (189)
8 CHL00101 trpG anthranilate syn 99.9 5.7E-26 1.2E-30 166.3 12.1 98 26-123 1-98 (190)
9 PRK06895 putative anthranilate 99.9 8.9E-26 1.9E-30 165.2 12.6 97 24-122 1-97 (190)
10 PRK08857 para-aminobenzoate sy 99.9 8.6E-26 1.9E-30 165.7 12.3 98 26-123 1-98 (193)
11 PRK05637 anthranilate synthase 99.9 3.5E-25 7.5E-30 164.6 11.7 96 25-121 2-97 (208)
12 PRK07765 para-aminobenzoate sy 99.9 2E-23 4.2E-28 155.7 12.1 99 25-123 1-102 (214)
13 cd01743 GATase1_Anthranilate_S 99.9 5.4E-23 1.2E-27 149.4 12.5 97 27-123 1-97 (184)
14 COG0518 GuaA GMP synthase - Gl 99.9 1.5E-22 3.3E-27 149.5 12.2 97 25-122 2-104 (198)
15 PRK09522 bifunctional glutamin 99.9 1.1E-22 2.4E-27 168.6 11.7 98 25-122 2-102 (531)
16 PF00117 GATase: Glutamine ami 99.9 6.8E-23 1.5E-27 149.0 8.6 94 28-122 1-97 (192)
17 COG0505 CarA Carbamoylphosphat 99.9 3.3E-22 7.1E-27 157.0 11.7 99 22-123 177-276 (368)
18 TIGR00888 guaA_Nterm GMP synth 99.9 6.7E-22 1.4E-26 144.2 11.7 95 27-123 1-96 (188)
19 CHL00197 carA carbamoyl-phosph 99.9 7.4E-22 1.6E-26 158.0 12.9 97 23-122 191-288 (382)
20 PRK14607 bifunctional glutamin 99.9 3.6E-22 7.8E-27 165.7 10.8 98 26-123 1-99 (534)
21 PLN02771 carbamoyl-phosphate s 99.9 8.8E-22 1.9E-26 158.5 12.5 96 25-123 241-336 (415)
22 cd01744 GATase1_CPSase Small c 99.9 1.5E-21 3.2E-26 141.5 10.8 93 27-122 1-94 (178)
23 PRK06490 glutamine amidotransf 99.9 2.3E-21 5.1E-26 146.7 11.6 99 22-122 5-111 (239)
24 PRK12564 carbamoyl phosphate s 99.9 3.2E-21 6.9E-26 153.5 11.9 96 24-122 177-273 (360)
25 PRK13566 anthranilate synthase 99.9 3.8E-21 8.1E-26 164.0 12.9 102 19-122 521-623 (720)
26 cd01742 GATase1_GMP_Synthase T 99.9 2.8E-21 6.1E-26 139.5 10.5 95 27-123 1-96 (181)
27 PLN02889 oxo-acid-lyase/anthra 99.9 3E-21 6.5E-26 167.0 12.0 98 25-123 82-188 (918)
28 KOG0026 Anthranilate synthase, 99.9 5.4E-21 1.2E-25 137.1 11.3 101 22-122 16-117 (223)
29 PRK12838 carbamoyl phosphate s 99.9 5.6E-21 1.2E-25 151.7 12.0 96 23-122 166-262 (354)
30 PRK00758 GMP synthase subunit 99.9 6.7E-21 1.4E-25 138.5 11.1 92 26-123 1-93 (184)
31 TIGR01368 CPSaseIIsmall carbam 99.9 6.5E-21 1.4E-25 151.6 11.6 95 25-122 174-268 (358)
32 PLN02347 GMP synthetase 99.8 1.1E-20 2.5E-25 156.7 12.7 97 25-122 11-111 (536)
33 TIGR01815 TrpE-clade3 anthrani 99.8 1.5E-20 3.3E-25 160.2 13.1 101 20-122 512-613 (717)
34 PRK07053 glutamine amidotransf 99.8 2.7E-20 5.9E-25 140.5 11.7 100 23-122 1-108 (234)
35 PRK00074 guaA GMP synthase; Re 99.8 3.3E-20 7.1E-25 153.4 12.3 98 24-123 3-101 (511)
36 TIGR01823 PabB-fungal aminodeo 99.8 1.1E-19 2.4E-24 155.5 12.2 101 22-123 3-112 (742)
37 PRK05665 amidotransferase; Pro 99.8 2E-19 4.4E-24 136.3 11.0 100 23-123 1-117 (240)
38 PRK09065 glutamine amidotransf 99.8 6.5E-19 1.4E-23 133.1 9.6 87 34-122 21-113 (237)
39 PRK08250 glutamine amidotransf 99.8 2.5E-18 5.4E-23 129.8 11.4 97 25-123 1-110 (235)
40 PRK07567 glutamine amidotransf 99.8 4.5E-18 9.8E-23 129.0 10.1 96 25-120 2-116 (242)
41 cd01741 GATase1_1 Subgroup of 99.7 5E-17 1.1E-21 118.1 10.9 97 26-123 1-107 (188)
42 KOG1622 GMP synthase [Nucleoti 99.7 3.2E-17 7E-22 132.1 7.0 96 23-121 15-112 (552)
43 cd01748 GATase1_IGP_Synthase T 99.7 7.4E-17 1.6E-21 118.4 8.0 90 27-123 1-109 (198)
44 PRK13143 hisH imidazole glycer 99.7 1.8E-16 4E-21 116.9 9.6 90 25-121 1-107 (200)
45 cd01745 GATase1_2 Subgroup of 99.7 1.4E-16 3E-21 116.6 8.7 87 34-121 18-124 (189)
46 PRK13170 hisH imidazole glycer 99.7 2.3E-16 5E-21 116.1 9.4 82 25-115 1-88 (196)
47 PRK13181 hisH imidazole glycer 99.7 4.7E-16 1E-20 114.4 8.9 90 26-122 1-108 (199)
48 PRK13146 hisH imidazole glycer 99.7 5E-16 1.1E-20 115.4 8.9 92 24-121 1-113 (209)
49 KOG3179 Predicted glutamine sy 99.7 4.9E-16 1.1E-20 114.5 8.3 99 23-123 3-119 (245)
50 PRK13141 hisH imidazole glycer 99.6 5.4E-16 1.2E-20 114.4 8.4 90 26-122 1-109 (205)
51 PRK13527 glutamine amidotransf 99.6 5.6E-16 1.2E-20 114.1 8.0 77 37-117 16-97 (200)
52 KOG0370 Multifunctional pyrimi 99.6 8.3E-16 1.8E-20 132.2 9.8 96 22-123 170-266 (1435)
53 PRK13525 glutamine amidotransf 99.6 1.7E-15 3.6E-20 111.0 10.1 86 24-116 1-91 (189)
54 PRK13152 hisH imidazole glycer 99.6 3.7E-15 7.9E-20 109.9 10.0 80 27-113 2-89 (201)
55 TIGR01855 IMP_synth_hisH imida 99.6 3.8E-15 8.2E-20 109.5 8.5 89 27-122 1-108 (196)
56 CHL00188 hisH imidazole glycer 99.6 9.1E-15 2E-19 108.9 10.1 83 25-114 2-91 (210)
57 cd01746 GATase1_CTP_Synthase T 99.6 1.3E-15 2.7E-20 115.3 5.4 89 33-123 16-110 (235)
58 KOG1224 Para-aminobenzoate (PA 99.6 6.1E-15 1.3E-19 121.1 9.3 101 21-122 11-120 (767)
59 PRK11366 puuD gamma-glutamyl-g 99.6 1.5E-14 3.3E-19 110.4 9.4 82 39-121 30-131 (254)
60 TIGR01737 FGAM_synth_I phospho 99.6 4.2E-14 9.2E-19 106.2 11.4 93 25-122 1-105 (227)
61 TIGR00337 PyrG CTP synthase. C 99.5 1.6E-14 3.5E-19 119.4 8.2 101 19-124 284-399 (525)
62 COG0118 HisH Glutamine amidotr 99.5 3.6E-14 7.7E-19 104.6 9.0 83 24-113 1-90 (204)
63 PRK13142 hisH imidazole glycer 99.5 5.7E-14 1.2E-18 103.5 8.6 81 26-114 1-87 (192)
64 PF07722 Peptidase_C26: Peptid 99.5 1E-13 2.2E-18 103.6 9.7 83 38-121 27-130 (217)
65 PRK05380 pyrG CTP synthetase; 99.5 3E-14 6.5E-19 117.9 7.4 105 15-121 279-396 (533)
66 TIGR03800 PLP_synth_Pdx2 pyrid 99.5 7.3E-14 1.6E-18 102.1 8.3 82 26-114 1-87 (184)
67 cd01749 GATase1_PB Glutamine A 99.5 1.2E-13 2.7E-18 100.5 7.7 81 27-116 3-88 (183)
68 COG2071 Predicted glutamine am 99.5 1.9E-13 4.1E-18 103.1 8.9 80 39-120 30-130 (243)
69 PRK14004 hisH imidazole glycer 99.5 3.2E-13 7E-18 100.6 10.1 82 27-115 2-90 (210)
70 cd01740 GATase1_FGAR_AT Type 1 99.5 3E-13 6.5E-18 102.3 9.2 96 27-122 1-109 (238)
71 PRK03619 phosphoribosylformylg 99.5 1.1E-12 2.4E-17 98.1 11.3 94 25-123 1-107 (219)
72 PRK01175 phosphoribosylformylg 99.4 8.9E-13 1.9E-17 101.2 10.1 91 23-113 2-105 (261)
73 PRK06186 hypothetical protein; 99.4 3.8E-13 8.1E-18 101.4 7.7 96 25-122 2-107 (229)
74 PLN02617 imidazole glycerol ph 99.4 1E-12 2.2E-17 109.5 11.0 85 23-114 5-96 (538)
75 PRK13526 glutamine amidotransf 99.4 2.1E-12 4.5E-17 94.2 8.6 91 25-122 3-103 (179)
76 PLN02327 CTP synthase 99.4 8.1E-13 1.8E-17 109.8 7.0 108 15-124 288-418 (557)
77 cd01747 GATase1_Glutamyl_Hydro 99.4 5.5E-12 1.2E-16 97.3 9.6 81 38-119 23-114 (273)
78 PLN02832 glutamine amidotransf 99.3 3.5E-12 7.6E-17 97.2 7.9 84 24-114 1-89 (248)
79 COG0047 PurL Phosphoribosylfor 99.3 7.1E-12 1.5E-16 93.8 9.2 86 24-113 2-97 (231)
80 PRK05368 homoserine O-succinyl 99.3 1.6E-11 3.4E-16 96.0 10.8 94 24-117 35-155 (302)
81 cd01750 GATase1_CobQ Type 1 gl 99.2 4.5E-11 9.7E-16 87.8 8.0 83 27-115 1-90 (194)
82 COG0504 PyrG CTP synthase (UTP 99.2 6E-11 1.3E-15 97.0 7.5 97 25-124 289-399 (533)
83 PRK11780 isoprenoid biosynthes 99.0 3.1E-09 6.6E-14 79.7 10.8 91 25-115 2-146 (217)
84 cd03130 GATase1_CobB Type 1 gl 99.0 1.7E-09 3.8E-14 79.7 6.8 73 38-114 14-92 (198)
85 PF13507 GATase_5: CobB/CobQ-l 98.9 1.9E-09 4.1E-14 82.8 5.9 90 24-113 1-106 (259)
86 cd03133 GATase1_ES1 Type 1 glu 98.8 3.6E-08 7.7E-13 73.8 10.2 76 40-115 22-143 (213)
87 PRK06278 cobyrinic acid a,c-di 98.8 1.7E-08 3.7E-13 83.3 8.3 79 25-114 1-82 (476)
88 cd03131 GATase1_HTS Type 1 glu 98.8 6.6E-09 1.4E-13 75.6 4.1 60 63-122 57-124 (175)
89 cd01653 GATase1 Type 1 glutami 98.8 7.2E-08 1.6E-12 61.2 8.3 73 38-110 15-92 (115)
90 cd03169 GATase1_PfpI_1 Type 1 98.8 5.5E-08 1.2E-12 70.1 8.2 46 68-113 76-124 (180)
91 PRK00784 cobyric acid synthase 98.7 3.3E-08 7.1E-13 81.8 7.4 84 24-114 251-342 (488)
92 KOG2387 CTP synthase (UTP-ammo 98.7 5.3E-08 1.2E-12 79.3 7.8 55 68-123 363-418 (585)
93 TIGR01382 PfpI intracellular p 98.7 6.9E-08 1.5E-12 68.4 7.5 75 39-113 17-108 (166)
94 TIGR01857 FGAM-synthase phosph 98.7 1.6E-07 3.6E-12 84.5 10.8 90 23-113 976-1090(1239)
95 PLN03206 phosphoribosylformylg 98.7 1.5E-07 3.3E-12 85.2 10.4 92 22-113 1035-1142(1307)
96 cd03132 GATase1_catalase Type 98.7 1.1E-07 2.4E-12 65.9 7.3 90 24-113 1-111 (142)
97 PRK11574 oxidative-stress-resi 98.6 4.9E-07 1.1E-11 65.9 10.3 90 23-113 1-115 (196)
98 TIGR01735 FGAM_synt phosphorib 98.6 2.5E-07 5.4E-12 84.0 10.2 94 22-115 1053-1162(1310)
99 cd03147 GATase1_Ydr533c_like T 98.6 2.4E-07 5.3E-12 70.0 8.5 74 40-113 30-143 (231)
100 PRK01077 cobyrinic acid a,c-di 98.6 2.1E-07 4.6E-12 76.2 8.7 86 25-114 246-339 (451)
101 cd03128 GAT_1 Type 1 glutamine 98.6 2.2E-07 4.7E-12 56.5 6.7 73 38-110 15-92 (92)
102 PRK05297 phosphoribosylformylg 98.6 4.7E-07 1E-11 82.2 10.7 90 23-113 1034-1140(1290)
103 PRK04155 chaperone protein Hch 98.6 7.6E-07 1.6E-11 69.4 10.5 74 40-113 82-196 (287)
104 COG0693 ThiJ Putative intracel 98.6 3.7E-07 8.1E-12 66.0 8.2 91 24-114 2-116 (188)
105 cd03134 GATase1_PfpI_like A ty 98.6 4.1E-07 8.8E-12 64.3 8.0 75 39-113 17-110 (165)
106 cd03146 GAT1_Peptidase_E Type 98.5 3.7E-07 8E-12 67.9 6.3 88 22-113 29-130 (212)
107 cd03135 GATase1_DJ-1 Type 1 gl 98.5 1.4E-06 3.1E-11 61.1 8.3 75 39-113 16-109 (163)
108 TIGR00379 cobB cobyrinic acid 98.4 8.7E-07 1.9E-11 72.7 8.1 86 25-114 245-338 (449)
109 cd03140 GATase1_PfpI_3 Type 1 98.4 1.6E-06 3.5E-11 61.9 8.1 75 39-113 16-107 (170)
110 KOG0623 Glutamine amidotransfe 98.4 1.6E-06 3.4E-11 69.1 8.2 80 26-112 3-89 (541)
111 cd03148 GATase1_EcHsp31_like T 98.4 2.7E-06 5.9E-11 64.3 8.6 75 39-113 30-145 (232)
112 COG0311 PDX2 Predicted glutami 98.3 1.8E-06 3.9E-11 63.2 6.6 84 25-115 1-90 (194)
113 PHA03366 FGAM-synthase; Provis 98.3 4.7E-06 1E-10 75.9 10.6 92 21-113 1025-1133(1304)
114 cd03141 GATase1_Hsp31_like Typ 98.3 3.2E-06 6.9E-11 63.2 7.3 75 40-114 28-140 (221)
115 TIGR00313 cobQ cobyric acid sy 98.3 1.2E-06 2.7E-11 72.3 5.2 83 25-114 248-336 (475)
116 PF07685 GATase_3: CobB/CobQ-l 98.3 8.7E-07 1.9E-11 63.1 3.7 48 68-115 7-60 (158)
117 TIGR01739 tegu_FGAM_synt herpe 98.3 8.7E-06 1.9E-10 73.8 10.5 91 22-113 927-1034(1202)
118 TIGR01383 not_thiJ DJ-1 family 98.2 7E-06 1.5E-10 58.6 7.5 75 39-113 17-112 (179)
119 cd03137 GATase1_AraC_1 AraC tr 98.2 1.7E-05 3.6E-10 57.1 8.5 47 67-113 63-112 (187)
120 PRK13896 cobyrinic acid a,c-di 98.2 5.5E-06 1.2E-10 67.9 6.7 84 25-114 234-325 (433)
121 PF01174 SNO: SNO glutamine am 98.1 2.4E-06 5.2E-11 62.7 3.1 70 40-115 11-86 (188)
122 PF01965 DJ-1_PfpI: DJ-1/PfpI 98.1 1.4E-06 3E-11 61.0 1.7 55 59-113 28-87 (147)
123 COG1492 CobQ Cobyric acid synt 98.1 1.3E-05 2.8E-10 66.2 7.3 83 24-114 251-342 (486)
124 PRK11249 katE hydroperoxidase 98.0 2.8E-05 6.2E-10 67.4 8.1 91 23-113 596-707 (752)
125 cd03144 GATase1_ScBLP_like Typ 98.0 1.3E-05 2.8E-10 54.6 4.8 44 67-110 43-90 (114)
126 cd03139 GATase1_PfpI_2 Type 1 97.9 6.6E-05 1.4E-09 53.6 7.5 75 39-113 16-110 (183)
127 PRK05282 (alpha)-aspartyl dipe 97.9 2.6E-05 5.6E-10 59.2 5.2 91 23-115 30-131 (233)
128 PF04204 HTS: Homoserine O-suc 97.7 5.5E-05 1.2E-09 59.3 4.8 98 23-120 33-158 (298)
129 COG3442 Predicted glutamine am 97.7 3.5E-05 7.6E-10 58.0 3.1 74 39-114 25-104 (250)
130 KOG2764 Putative transcription 97.7 0.00019 4.1E-09 54.3 7.0 71 40-110 24-113 (247)
131 PRK09393 ftrA transcriptional 97.6 0.00076 1.7E-08 52.6 9.5 47 67-113 74-122 (322)
132 TIGR01001 metA homoserine O-su 97.5 0.00049 1.1E-08 53.9 7.6 93 23-115 34-154 (300)
133 cd03138 GATase1_AraC_2 AraC tr 97.5 0.00023 5E-09 51.5 5.4 47 67-113 68-120 (195)
134 KOG3210 Imidazoleglycerol-phos 97.4 0.00097 2.1E-08 48.6 7.4 88 25-116 12-110 (226)
135 KOG1559 Gamma-glutamyl hydrola 97.3 0.00061 1.3E-08 52.3 5.8 77 38-115 80-165 (340)
136 PF13278 DUF4066: Putative ami 97.3 0.00052 1.1E-08 48.5 4.7 47 67-113 60-109 (166)
137 cd03129 GAT1_Peptidase_E_like 97.2 0.0017 3.7E-08 47.9 7.4 92 22-113 27-130 (210)
138 cd03136 GATase1_AraC_ArgR_like 97.1 0.0011 2.4E-08 47.6 5.4 47 67-113 63-111 (185)
139 COG1797 CobB Cobyrinic acid a, 97.0 0.0022 4.8E-08 52.6 6.8 89 23-114 244-340 (451)
140 COG1897 MetA Homoserine trans- 96.5 0.011 2.4E-07 45.7 6.8 98 19-116 29-154 (307)
141 COG3340 PepE Peptidase E [Amin 96.3 0.019 4.1E-07 43.2 6.6 83 24-108 32-129 (224)
142 PRK11104 hemG protoporphyrinog 96.0 0.069 1.5E-06 38.6 8.5 79 25-106 1-87 (177)
143 PRK03708 ppnK inorganic polyph 95.9 0.049 1.1E-06 42.3 7.8 77 25-107 1-90 (277)
144 PRK01911 ppnK inorganic polyph 95.9 0.061 1.3E-06 42.1 8.3 76 25-107 1-98 (292)
145 KOG1907 Phosphoribosylformylgl 95.9 0.032 7E-07 49.7 7.3 92 22-113 1056-1163(1320)
146 COG4090 Uncharacterized protei 95.8 0.032 6.9E-07 39.0 5.6 43 68-112 85-130 (154)
147 PRK04539 ppnK inorganic polyph 95.8 0.13 2.8E-06 40.4 9.6 76 25-107 6-102 (296)
148 PRK02155 ppnK NAD(+)/NADH kina 95.7 0.14 3.1E-06 40.0 9.6 76 25-107 6-97 (291)
149 COG3155 ElbB Uncharacterized p 95.7 0.1 2.2E-06 38.0 8.0 52 67-118 84-149 (217)
150 PF09825 BPL_N: Biotin-protein 95.6 0.036 7.8E-07 44.8 6.1 85 25-112 1-97 (367)
151 PF03575 Peptidase_S51: Peptid 95.6 0.019 4E-07 40.4 3.9 72 37-110 2-82 (154)
152 PRK03372 ppnK inorganic polyph 95.6 0.1 2.2E-06 41.2 8.4 76 25-107 6-106 (306)
153 TIGR02069 cyanophycinase cyano 95.6 0.058 1.3E-06 41.3 6.8 93 22-114 26-133 (250)
154 cd03145 GAT1_cyanophycinase Ty 95.4 0.12 2.7E-06 38.4 7.9 92 22-113 27-133 (217)
155 PRK03378 ppnK inorganic polyph 95.3 0.15 3.2E-06 40.0 8.5 76 25-107 6-97 (292)
156 PRK14077 pnk inorganic polypho 95.3 0.16 3.5E-06 39.7 8.7 78 23-107 9-98 (287)
157 PRK02649 ppnK inorganic polyph 95.3 0.14 3E-06 40.4 8.4 75 25-106 2-101 (305)
158 cd00886 MogA_MoaB MogA_MoaB fa 95.0 0.37 8E-06 33.9 9.0 46 34-79 19-72 (152)
159 PF09897 DUF2124: Uncharacteri 94.6 0.017 3.6E-07 41.0 1.3 83 22-105 17-119 (147)
160 PRK02645 ppnK inorganic polyph 94.4 0.37 8E-06 37.9 8.5 75 25-105 4-89 (305)
161 PRK05569 flavodoxin; Provision 94.3 1.1 2.4E-05 30.5 10.0 76 26-104 3-90 (141)
162 TIGR02667 moaB_proteo molybden 94.3 0.61 1.3E-05 33.3 8.8 57 23-79 3-74 (163)
163 PRK05568 flavodoxin; Provision 94.0 1.3 2.7E-05 30.2 10.3 77 26-105 3-90 (142)
164 PRK01231 ppnK inorganic polyph 93.9 0.48 1E-05 37.1 8.2 76 25-107 5-96 (295)
165 PLN02929 NADH kinase 93.7 0.28 6.1E-06 38.7 6.6 60 38-106 37-96 (301)
166 PF00072 Response_reg: Respons 93.4 0.2 4.4E-06 31.9 4.6 77 27-104 1-78 (112)
167 PRK14075 pnk inorganic polypho 93.3 0.61 1.3E-05 35.7 7.7 70 25-107 1-72 (256)
168 COG4635 HemG Flavodoxin [Energ 93.0 0.39 8.4E-06 34.8 5.8 80 25-107 1-89 (175)
169 PF03698 UPF0180: Uncharacteri 92.9 0.3 6.5E-06 31.2 4.6 47 25-81 2-48 (80)
170 PRK04885 ppnK inorganic polyph 92.9 0.46 1E-05 36.7 6.6 64 25-107 1-71 (265)
171 PRK14076 pnk inorganic polypho 92.8 0.62 1.3E-05 39.6 7.8 79 23-107 289-382 (569)
172 COG4977 Transcriptional regula 92.6 0.3 6.4E-06 39.0 5.3 46 68-113 76-124 (328)
173 smart00852 MoCF_biosynth Proba 91.8 0.94 2E-05 30.9 6.5 46 34-79 17-68 (135)
174 PRK02231 ppnK inorganic polyph 91.8 0.78 1.7E-05 35.6 6.7 62 38-106 3-75 (272)
175 TIGR00177 molyb_syn molybdenum 91.6 2.2 4.7E-05 29.6 8.3 45 35-79 27-77 (144)
176 PRK03094 hypothetical protein; 91.6 0.63 1.4E-05 29.7 4.9 47 25-81 2-48 (80)
177 PRK01372 ddl D-alanine--D-alan 91.0 2.3 4.9E-05 32.6 8.5 55 21-75 1-63 (304)
178 PRK10816 DNA-binding transcrip 90.5 1.8 3.8E-05 30.9 7.1 78 25-104 1-79 (223)
179 PRK03767 NAD(P)H:quinone oxido 90.3 2.2 4.9E-05 31.0 7.6 78 25-105 2-114 (200)
180 PRK09468 ompR osmolarity respo 90.2 2.5 5.3E-05 30.6 7.8 81 23-105 4-85 (239)
181 PRK06703 flavodoxin; Provision 90.2 2.9 6.4E-05 28.8 7.9 48 25-74 2-54 (151)
182 cd00885 cinA Competence-damage 90.2 2.9 6.3E-05 30.0 8.0 79 35-115 19-103 (170)
183 PLN02935 Bifunctional NADH kin 90.1 2.2 4.8E-05 36.0 8.2 77 24-106 194-295 (508)
184 PRK00561 ppnK inorganic polyph 90.0 0.9 2E-05 35.1 5.5 66 25-107 1-67 (259)
185 PF01513 NAD_kinase: ATP-NAD k 90.0 0.62 1.3E-05 36.0 4.6 36 66-107 74-110 (285)
186 PRK01185 ppnK inorganic polyph 89.6 2.2 4.8E-05 33.0 7.4 73 25-106 1-82 (271)
187 PF06283 ThuA: Trehalose utili 89.4 1.6 3.4E-05 32.1 6.2 65 40-107 24-91 (217)
188 TIGR01754 flav_RNR ribonucleot 89.4 3.3 7.2E-05 28.3 7.5 77 25-104 1-90 (140)
189 TIGR00147 lipid kinase, YegS/R 89.3 4.7 0.0001 30.8 9.1 85 25-115 2-102 (293)
190 cd00758 MoCF_BD MoCF_BD: molyb 88.9 2.8 6E-05 28.6 6.8 45 35-79 19-69 (133)
191 cd06292 PBP1_LacI_like_10 Liga 88.8 3.3 7.2E-05 30.4 7.7 63 39-103 20-89 (273)
192 TIGR01755 flav_wrbA NAD(P)H:qu 88.7 7.5 0.00016 28.3 9.4 77 26-105 2-113 (197)
193 PRK06756 flavodoxin; Provision 88.5 6.1 0.00013 27.1 9.5 78 25-105 2-91 (148)
194 PRK10336 DNA-binding transcrip 88.4 3.3 7.1E-05 29.2 7.2 79 25-104 1-79 (219)
195 PRK09271 flavodoxin; Provision 88.2 6.8 0.00015 27.5 8.6 53 25-78 1-60 (160)
196 PRK06242 flavodoxin; Provision 88.1 3.5 7.6E-05 28.2 6.9 75 25-104 1-81 (150)
197 PRK09836 DNA-binding transcrip 88.0 3.6 7.7E-05 29.4 7.2 77 25-103 1-78 (227)
198 PRK09267 flavodoxin FldA; Vali 87.8 7.5 0.00016 27.3 9.3 80 25-106 2-89 (169)
199 PRK14690 molybdopterin biosynt 87.8 5.8 0.00012 32.6 9.0 44 36-79 221-270 (419)
200 PRK01215 competence damage-ind 87.7 5 0.00011 30.9 8.2 42 36-79 24-73 (264)
201 COG4126 Hydantoin racemase [Am 87.7 1.6 3.4E-05 33.1 5.2 46 68-120 69-114 (230)
202 PRK10161 transcriptional regul 87.4 4.2 9.1E-05 29.0 7.3 81 23-104 1-83 (229)
203 PRK11083 DNA-binding response 87.2 5.3 0.00011 28.2 7.7 79 24-104 3-82 (228)
204 cd06284 PBP1_LacI_like_6 Ligan 87.1 3.1 6.8E-05 30.3 6.6 59 39-104 20-84 (267)
205 PRK13055 putative lipid kinase 86.9 9.1 0.0002 30.2 9.5 57 24-80 2-71 (334)
206 PRK00421 murC UDP-N-acetylmura 86.9 8.2 0.00018 31.6 9.5 57 22-78 5-76 (461)
207 PF06490 FleQ: Flagellar regul 86.7 1.1 2.5E-05 29.7 3.7 75 26-103 1-75 (109)
208 PRK03501 ppnK inorganic polyph 86.5 5 0.00011 31.0 7.6 64 26-106 4-74 (264)
209 PRK03673 hypothetical protein; 86.5 5 0.00011 32.9 7.9 45 35-79 21-71 (396)
210 TIGR00200 cinA_nterm competenc 86.4 6.5 0.00014 32.3 8.6 45 35-79 20-70 (413)
211 PLN02727 NAD kinase 86.2 4.6 0.0001 36.6 8.1 78 23-107 677-777 (986)
212 PF02056 Glyco_hydro_4: Family 86.2 1.4 3.1E-05 32.3 4.2 27 88-114 151-177 (183)
213 COG0303 MoeA Molybdopterin bio 86.2 3.2 6.9E-05 34.1 6.7 69 23-92 175-265 (404)
214 PRK00549 competence damage-ind 85.9 6.2 0.00014 32.3 8.3 43 35-79 20-70 (414)
215 cd06305 PBP1_methylthioribose_ 85.9 3.8 8.3E-05 30.1 6.6 39 39-77 20-64 (273)
216 PRK15029 arginine decarboxylas 85.7 4.4 9.6E-05 35.9 7.7 78 25-104 1-92 (755)
217 PRK09417 mogA molybdenum cofac 85.7 4 8.8E-05 30.1 6.5 44 36-79 24-77 (193)
218 PRK11914 diacylglycerol kinase 85.5 6.7 0.00015 30.3 8.0 57 24-80 8-76 (306)
219 cd03522 MoeA_like MoeA_like. T 85.4 8.7 0.00019 30.4 8.6 58 22-79 157-230 (312)
220 cd06320 PBP1_allose_binding Pe 85.3 9.4 0.0002 28.1 8.5 59 40-103 21-88 (275)
221 COG4285 Uncharacterized conser 85.1 3.4 7.3E-05 31.5 5.8 46 68-118 49-98 (253)
222 COG1597 LCB5 Sphingosine kinas 85.1 7.8 0.00017 30.3 8.2 44 38-81 23-71 (301)
223 PRK10766 DNA-binding transcrip 85.0 7.8 0.00017 27.4 7.7 79 23-104 1-80 (221)
224 PRK15408 autoinducer 2-binding 84.7 5.4 0.00012 31.4 7.2 55 22-76 21-88 (336)
225 CHL00148 orf27 Ycf27; Reviewed 84.4 9.2 0.0002 27.3 7.9 81 23-105 5-85 (240)
226 cd06310 PBP1_ABC_sugar_binding 84.4 9.6 0.00021 27.9 8.1 59 40-103 21-88 (273)
227 PRK10643 DNA-binding transcrip 84.3 6.9 0.00015 27.4 7.1 77 25-103 1-78 (222)
228 PRK13054 lipid kinase; Reviewe 84.2 17 0.00037 28.0 9.9 58 23-80 2-68 (300)
229 PRK03670 competence damage-ind 84.0 9.6 0.00021 29.2 8.1 45 35-79 20-71 (252)
230 cd06300 PBP1_ABC_sugar_binding 83.7 4.6 0.0001 29.7 6.2 60 39-103 20-91 (272)
231 COG0771 MurD UDP-N-acetylmuram 83.7 10 0.00022 31.7 8.6 55 23-78 6-79 (448)
232 PRK10355 xylF D-xylose transpo 83.6 6 0.00013 30.8 7.0 76 23-103 24-112 (330)
233 cd06318 PBP1_ABC_sugar_binding 83.5 4.5 9.8E-05 29.9 6.1 39 39-77 20-64 (282)
234 PF09822 ABC_transp_aux: ABC-t 83.3 6.2 0.00014 29.9 6.9 73 22-101 144-229 (271)
235 COG0745 OmpR Response regulato 82.9 2.1 4.5E-05 32.2 4.0 79 25-106 1-81 (229)
236 PF00994 MoCF_biosynth: Probab 82.9 2.5 5.5E-05 29.0 4.2 42 35-79 17-67 (144)
237 TIGR03787 marine_sort_RR prote 82.9 8.7 0.00019 27.3 7.2 80 25-104 1-81 (227)
238 cd06309 PBP1_YtfQ_like Peripla 82.9 7.8 0.00017 28.6 7.1 40 38-77 19-64 (273)
239 cd01451 vWA_Magnesium_chelatas 82.8 6.2 0.00013 27.9 6.3 55 70-124 101-167 (178)
240 cd06301 PBP1_rhizopine_binding 82.7 4.9 0.00011 29.5 5.9 60 39-103 20-87 (272)
241 PF12724 Flavodoxin_5: Flavodo 82.6 2.9 6.2E-05 28.8 4.4 70 34-104 8-82 (143)
242 PF03358 FMN_red: NADPH-depend 82.5 3 6.5E-05 28.5 4.5 81 25-106 1-115 (152)
243 cd06319 PBP1_ABC_sugar_binding 82.4 6.2 0.00013 29.0 6.4 39 39-77 20-64 (277)
244 COG1058 CinA Predicted nucleot 82.3 11 0.00023 29.2 7.7 45 35-79 21-71 (255)
245 smart00448 REC cheY-homologous 82.3 3.4 7.3E-05 20.6 3.8 50 25-74 1-50 (55)
246 PF09075 STb_secrete: Heat-sta 82.2 0.26 5.6E-06 27.4 -0.8 17 99-115 31-47 (48)
247 cd01574 PBP1_LacI Ligand-bindi 81.9 13 0.00027 27.1 7.9 40 38-77 19-65 (264)
248 cd01575 PBP1_GntR Ligand-bindi 81.8 11 0.00024 27.4 7.5 59 39-103 20-84 (268)
249 cd01538 PBP1_ABC_xylose_bindin 81.7 6.1 0.00013 29.7 6.2 60 39-103 20-86 (288)
250 TIGR02154 PhoB phosphate regul 81.4 7.9 0.00017 27.2 6.4 79 24-104 2-83 (226)
251 PRK13435 response regulator; P 81.3 9.5 0.00021 25.3 6.5 86 22-108 3-89 (145)
252 cd06312 PBP1_ABC_sugar_binding 81.2 12 0.00026 27.6 7.6 61 39-104 21-89 (271)
253 cd01545 PBP1_SalR Ligand-bindi 81.1 8.4 0.00018 28.1 6.7 39 39-77 20-65 (270)
254 cd06316 PBP1_ABC_sugar_binding 80.8 8.4 0.00018 28.9 6.7 38 40-77 21-65 (294)
255 PRK14498 putative molybdopteri 80.5 17 0.00036 31.3 9.1 44 36-79 214-263 (633)
256 cd02067 B12-binding B12 bindin 80.5 11 0.00024 24.8 6.5 39 38-77 17-59 (119)
257 COG0061 nadF NAD kinase [Coenz 80.3 13 0.00029 28.7 7.8 64 38-107 19-89 (281)
258 PRK15479 transcriptional regul 80.3 15 0.00032 25.7 7.5 79 25-104 1-79 (221)
259 PRK10841 hybrid sensory kinase 80.3 9.7 0.00021 34.3 7.8 82 22-105 799-881 (924)
260 PRK01390 murD UDP-N-acetylmura 80.2 13 0.00029 30.3 8.1 55 24-79 9-76 (460)
261 PRK10680 molybdopterin biosynt 80.1 9.9 0.00021 31.2 7.3 43 37-79 206-254 (411)
262 PF12641 Flavodoxin_3: Flavodo 79.8 16 0.00034 26.1 7.5 71 31-105 5-77 (160)
263 TIGR02634 xylF D-xylose ABC tr 79.8 8.4 0.00018 29.3 6.5 41 37-77 17-63 (302)
264 PRK13337 putative lipid kinase 79.6 26 0.00057 27.0 9.7 56 25-80 2-69 (304)
265 cd01540 PBP1_arabinose_binding 79.5 6.7 0.00015 29.1 5.8 38 39-77 20-63 (289)
266 COG0521 MoaB Molybdopterin bio 79.5 21 0.00046 25.9 8.2 42 38-79 30-78 (169)
267 cd05014 SIS_Kpsf KpsF-like pro 79.5 9.5 0.00021 25.1 6.0 78 26-106 2-83 (128)
268 PRK09958 DNA-binding transcrip 79.5 11 0.00024 26.2 6.6 77 25-103 1-79 (204)
269 PRK11517 transcriptional regul 79.4 14 0.0003 26.0 7.2 77 25-104 1-78 (223)
270 cd00887 MoeA MoeA family. Memb 79.2 10 0.00023 30.7 7.1 45 35-79 195-245 (394)
271 PRK10710 DNA-binding transcrip 79.0 19 0.00042 25.5 7.9 79 24-105 10-89 (240)
272 cd06299 PBP1_LacI_like_13 Liga 78.9 17 0.00037 26.4 7.7 39 39-77 20-64 (265)
273 PRK06849 hypothetical protein; 78.4 18 0.00038 28.9 8.2 56 22-78 2-57 (389)
274 COG2185 Sbm Methylmalonyl-CoA 78.3 17 0.00036 25.8 7.0 72 22-94 10-90 (143)
275 PRK09390 fixJ response regulat 78.3 18 0.0004 24.5 7.7 80 24-104 3-82 (202)
276 PRK13837 two-component VirA-li 78.2 14 0.0003 32.6 8.1 82 22-106 695-778 (828)
277 COG2204 AtoC Response regulato 78.2 11 0.00023 31.6 7.0 79 23-103 3-82 (464)
278 cd03142 GATase1_ThuA Type 1 gl 78.1 25 0.00054 26.4 8.4 72 34-107 22-98 (215)
279 PF00455 DeoRC: DeoR C termina 77.9 9.5 0.0002 26.9 5.8 77 26-104 21-101 (161)
280 PRK14497 putative molybdopteri 77.8 6.7 0.00015 33.5 5.8 43 37-79 208-256 (546)
281 cd06273 PBP1_GntR_like_1 This 77.8 14 0.00031 26.8 7.1 58 39-103 20-84 (268)
282 PRK09701 D-allose transporter 77.7 24 0.00053 26.9 8.5 55 23-77 23-91 (311)
283 PRK04761 ppnK inorganic polyph 77.7 3.7 8.1E-05 31.4 3.9 34 68-107 25-59 (246)
284 PRK15347 two component system 77.3 13 0.00029 32.5 7.7 81 23-105 689-774 (921)
285 PF04016 DUF364: Domain of unk 77.2 6 0.00013 27.7 4.6 74 19-100 6-91 (147)
286 PRK11361 acetoacetate metaboli 76.8 19 0.00041 29.1 8.0 80 23-104 3-83 (457)
287 PRK11173 two-component respons 76.5 19 0.00041 25.9 7.3 77 25-104 4-81 (237)
288 PLN03029 type-a response regul 76.2 17 0.00036 26.8 7.0 34 22-55 6-39 (222)
289 cd06315 PBP1_ABC_sugar_binding 76.2 17 0.00037 27.1 7.2 39 39-77 21-65 (280)
290 PRK13558 bacterio-opsin activa 75.9 15 0.00032 31.2 7.5 80 24-104 7-86 (665)
291 cd01425 RPS2 Ribosomal protein 75.9 23 0.00049 25.8 7.5 31 67-104 126-157 (193)
292 PRK13856 two-component respons 75.9 17 0.00036 26.4 6.9 77 25-104 2-79 (241)
293 COG0429 Predicted hydrolase of 75.9 23 0.0005 28.6 8.0 78 34-117 90-169 (345)
294 PRK12359 flavodoxin FldB; Prov 75.8 27 0.00059 25.1 8.4 52 25-79 1-55 (172)
295 cd06314 PBP1_tmGBP Periplasmic 75.5 11 0.00023 27.8 5.9 39 39-77 19-64 (271)
296 cd06296 PBP1_CatR_like Ligand- 75.4 21 0.00046 26.0 7.4 58 39-103 20-84 (270)
297 cd06295 PBP1_CelR Ligand bindi 75.3 12 0.00026 27.5 6.1 57 40-103 32-93 (275)
298 PRK10701 DNA-binding transcrip 75.3 21 0.00046 25.6 7.3 77 25-104 2-79 (240)
299 PRK10365 transcriptional regul 75.3 21 0.00045 28.7 7.8 81 23-104 4-84 (441)
300 cd01541 PBP1_AraR Ligand-bindi 75.3 14 0.00031 27.0 6.5 40 39-78 20-65 (273)
301 PRK10653 D-ribose transporter 75.1 20 0.00044 26.9 7.4 55 23-77 25-91 (295)
302 cd06281 PBP1_LacI_like_5 Ligan 75.0 28 0.00061 25.5 8.0 40 38-77 19-64 (269)
303 cd06298 PBP1_CcpA_like Ligand- 74.9 21 0.00046 25.9 7.3 39 39-77 20-64 (268)
304 PRK10529 DNA-binding transcrip 74.9 21 0.00046 25.2 7.1 76 25-103 2-78 (225)
305 PRK03604 moaC bifunctional mol 74.8 30 0.00065 27.4 8.4 43 37-79 177-226 (312)
306 TIGR02990 ectoine_eutA ectoine 74.6 23 0.0005 26.9 7.5 74 23-102 119-211 (239)
307 PRK10423 transcriptional repre 74.6 20 0.00043 27.2 7.3 56 22-77 54-121 (327)
308 cd08183 Fe-ADH2 Iron-containin 74.4 20 0.00044 28.6 7.5 62 24-86 22-92 (374)
309 KOG1467 Translation initiation 74.1 20 0.00044 30.4 7.5 85 18-107 379-471 (556)
310 COG4607 CeuA ABC-type enteroch 74.1 11 0.00024 30.0 5.7 53 19-77 53-127 (320)
311 PRK10703 DNA-binding transcrip 74.0 32 0.00068 26.3 8.3 55 23-77 58-124 (341)
312 cd06277 PBP1_LacI_like_1 Ligan 74.0 10 0.00023 27.7 5.4 39 39-77 23-67 (268)
313 PRK11303 DNA-binding transcrip 74.0 21 0.00045 27.1 7.2 55 23-77 60-126 (328)
314 cd06306 PBP1_TorT-like TorT-li 73.9 12 0.00025 27.7 5.7 39 39-77 20-66 (268)
315 PRK09191 two-component respons 73.8 23 0.00049 26.0 7.2 83 22-105 135-218 (261)
316 PRK15115 response regulator Gl 73.8 26 0.00056 28.3 8.0 80 23-104 4-84 (444)
317 cd06321 PBP1_ABC_sugar_binding 73.7 26 0.00056 25.6 7.5 60 39-103 20-88 (271)
318 PRK10923 glnG nitrogen regulat 73.6 24 0.00052 28.7 7.9 78 25-104 4-82 (469)
319 PF13407 Peripla_BP_4: Peripla 73.6 25 0.00053 25.6 7.3 59 40-103 20-86 (257)
320 cd01536 PBP1_ABC_sugar_binding 73.5 17 0.00038 26.1 6.5 38 40-77 21-64 (267)
321 COG1609 PurR Transcriptional r 73.2 13 0.00028 29.2 6.0 39 38-76 78-122 (333)
322 cd06322 PBP1_ABC_sugar_binding 73.0 27 0.00059 25.4 7.5 39 39-77 20-64 (267)
323 cd06308 PBP1_sensor_kinase_lik 73.0 14 0.00031 27.0 6.0 61 39-104 20-88 (270)
324 cd01539 PBP1_GGBP Periplasmic 72.9 12 0.00025 28.5 5.6 60 39-103 20-88 (303)
325 cd05298 GH4_GlvA_pagL_like Gly 72.7 9.5 0.00021 31.6 5.3 26 89-114 151-176 (437)
326 TIGR02638 lactal_redase lactal 72.7 29 0.00062 27.9 8.0 61 25-86 30-103 (379)
327 cd08185 Fe-ADH1 Iron-containin 72.5 34 0.00073 27.4 8.4 62 24-86 25-100 (380)
328 COG1454 EutG Alcohol dehydroge 72.4 18 0.0004 29.5 6.8 61 25-86 30-103 (377)
329 PLN02958 diacylglycerol kinase 72.2 41 0.0009 28.1 9.0 60 22-81 109-181 (481)
330 PRK01368 murD UDP-N-acetylmura 72.0 39 0.00084 27.9 8.8 53 24-78 6-73 (454)
331 cd06313 PBP1_ABC_sugar_binding 71.9 28 0.00061 25.7 7.4 38 39-76 20-63 (272)
332 cd06279 PBP1_LacI_like_3 Ligan 71.7 13 0.00028 27.7 5.5 39 39-77 25-65 (283)
333 TIGR00853 pts-lac PTS system, 71.7 24 0.00053 22.8 8.1 70 24-103 3-81 (95)
334 cd08179 NADPH_BDH NADPH-depend 71.6 43 0.00094 26.7 8.8 63 24-87 23-99 (375)
335 PF02310 B12-binding: B12 bind 71.4 18 0.00038 23.5 5.6 39 38-77 18-60 (121)
336 cd06302 PBP1_LsrB_Quorum_Sensi 71.3 22 0.00047 26.9 6.8 37 40-76 21-64 (298)
337 TIGR01752 flav_long flavodoxin 71.3 33 0.00071 24.1 8.5 78 27-106 2-87 (167)
338 KOG0399 Glutamate synthase [Am 71.2 32 0.0007 32.8 8.5 42 12-54 1773-1814(2142)
339 cd06297 PBP1_LacI_like_12 Liga 71.2 26 0.00056 25.8 7.1 40 38-77 19-64 (269)
340 PRK04308 murD UDP-N-acetylmura 71.0 28 0.0006 28.3 7.7 54 24-78 5-77 (445)
341 cd06283 PBP1_RegR_EndR_KdgR_li 70.8 31 0.00068 24.9 7.3 39 39-77 20-64 (267)
342 PRK14491 putative bifunctional 70.7 24 0.00053 30.4 7.5 44 36-79 395-444 (597)
343 cd08170 GlyDH Glycerol dehydro 70.7 19 0.00041 28.4 6.5 75 24-104 22-108 (351)
344 TIGR02956 TMAO_torS TMAO reduc 70.4 19 0.0004 31.9 6.9 80 23-104 701-784 (968)
345 KOG1838 Alpha/beta hydrolase [ 70.2 26 0.00057 28.9 7.2 97 11-116 108-218 (409)
346 PF13380 CoA_binding_2: CoA bi 70.2 26 0.00056 23.3 6.2 33 25-57 1-36 (116)
347 PF13649 Methyltransf_25: Meth 70.1 13 0.00028 23.5 4.5 68 25-93 25-92 (101)
348 TIGR02417 fruct_sucro_rep D-fr 69.8 30 0.00064 26.3 7.3 54 24-77 60-125 (327)
349 TIGR01753 flav_short flavodoxi 69.7 29 0.00064 22.9 9.5 42 34-78 9-54 (140)
350 PF00532 Peripla_BP_1: Peripla 69.6 15 0.00033 27.9 5.6 39 39-77 22-65 (279)
351 PRK11921 metallo-beta-lactamas 69.5 58 0.0012 26.2 9.6 56 23-79 246-310 (394)
352 cd06274 PBP1_FruR Ligand bindi 69.4 18 0.00039 26.4 5.8 39 39-77 20-64 (264)
353 PRK04690 murD UDP-N-acetylmura 69.4 44 0.00096 27.6 8.6 33 23-56 7-39 (468)
354 KOG4180 Predicted kinase [Gene 69.1 7.9 0.00017 31.3 3.9 56 40-103 80-135 (395)
355 cd01542 PBP1_TreR_like Ligand- 69.1 30 0.00065 25.0 6.9 39 39-77 20-64 (259)
356 PRK10014 DNA-binding transcrip 69.0 49 0.0011 25.2 8.5 56 22-77 62-129 (342)
357 PRK11091 aerobic respiration c 68.9 24 0.00052 30.6 7.2 82 23-106 524-609 (779)
358 PRK10936 TMAO reductase system 68.7 36 0.00078 26.5 7.6 74 24-103 46-134 (343)
359 PRK14987 gluconate operon tran 68.7 26 0.00057 26.7 6.8 54 23-76 62-127 (331)
360 PRK10310 PTS system galactitol 68.6 28 0.00062 22.3 7.0 48 25-76 3-58 (94)
361 PRK11107 hybrid sensory histid 68.6 29 0.00064 30.4 7.7 79 23-103 666-747 (919)
362 PRK07239 bifunctional uroporph 68.5 46 0.00099 26.5 8.3 95 20-121 7-122 (381)
363 TIGR01012 Sa_S2_E_A ribosomal 68.0 20 0.00043 26.6 5.7 31 68-105 108-139 (196)
364 cd08187 BDH Butanol dehydrogen 67.7 49 0.0011 26.5 8.3 62 24-86 28-103 (382)
365 cd06317 PBP1_ABC_sugar_binding 67.6 31 0.00068 25.1 6.8 59 40-103 22-87 (275)
366 cd08193 HVD 5-hydroxyvalerate 67.5 51 0.0011 26.3 8.4 61 25-86 27-100 (376)
367 cd06290 PBP1_LacI_like_9 Ligan 67.4 39 0.00083 24.5 7.2 39 39-77 20-64 (265)
368 cd06324 PBP1_ABC_sugar_binding 67.3 22 0.00047 27.0 6.0 39 39-77 21-67 (305)
369 cd06287 PBP1_LacI_like_8 Ligan 67.3 42 0.0009 25.0 7.5 39 38-77 27-65 (269)
370 cd06282 PBP1_GntR_like_2 Ligan 67.0 37 0.0008 24.5 7.0 60 39-104 20-86 (266)
371 PRK01710 murD UDP-N-acetylmura 67.0 70 0.0015 26.2 10.0 33 23-56 13-45 (458)
372 PRK09590 celB cellobiose phosp 67.0 26 0.00057 23.1 5.6 72 25-103 2-81 (104)
373 cd08194 Fe-ADH6 Iron-containin 66.9 51 0.0011 26.3 8.3 62 24-86 23-97 (375)
374 cd06293 PBP1_LacI_like_11 Liga 66.8 42 0.0009 24.5 7.3 39 39-77 20-64 (269)
375 cd06323 PBP1_ribose_binding Pe 66.3 39 0.00086 24.4 7.1 60 39-103 20-86 (268)
376 cd01537 PBP1_Repressors_Sugar_ 66.2 28 0.00061 24.7 6.2 38 40-77 21-64 (264)
377 cd06278 PBP1_LacI_like_2 Ligan 66.0 42 0.00091 24.2 7.2 39 39-77 20-63 (266)
378 cd08551 Fe-ADH iron-containing 65.9 50 0.0011 26.2 8.1 61 25-86 24-97 (370)
379 TIGR03436 acidobact_VWFA VWFA- 65.9 18 0.00038 27.7 5.3 50 71-121 168-238 (296)
380 PRK04020 rps2P 30S ribosomal p 65.4 55 0.0012 24.4 7.7 74 24-104 67-144 (204)
381 PLN02884 6-phosphofructokinase 65.1 8.8 0.00019 31.6 3.6 46 67-112 142-200 (411)
382 TIGR01481 ccpA catabolite cont 65.1 44 0.00095 25.3 7.4 55 23-77 58-124 (329)
383 cd06270 PBP1_GalS_like Ligand 64.9 51 0.0011 24.0 7.8 39 39-77 20-64 (268)
384 PRK00141 murD UDP-N-acetylmura 64.9 43 0.00093 27.7 7.7 33 23-56 14-46 (473)
385 cd08178 AAD_C C-terminal alcoh 64.9 57 0.0012 26.3 8.3 61 25-86 22-95 (398)
386 cd06267 PBP1_LacI_sugar_bindin 64.9 25 0.00055 25.0 5.8 57 40-103 21-84 (264)
387 PRK09526 lacI lac repressor; R 64.8 60 0.0013 24.7 8.2 53 23-75 62-127 (342)
388 cd08191 HHD 6-hydroxyhexanoate 64.8 37 0.00079 27.3 7.1 61 25-86 23-96 (386)
389 PF02844 GARS_N: Phosphoribosy 64.7 32 0.0007 22.7 5.6 22 25-47 1-22 (100)
390 cd06289 PBP1_MalI_like Ligand- 64.6 42 0.00092 24.2 7.0 39 39-77 20-64 (268)
391 COG3706 PleD Response regulato 64.6 30 0.00065 28.8 6.6 81 23-104 131-213 (435)
392 PRK10499 PTS system N,N'-diace 64.4 38 0.00083 22.3 6.9 71 25-103 4-79 (106)
393 TIGR01387 cztR_silR_copR heavy 64.4 36 0.00078 23.6 6.3 77 27-104 1-77 (218)
394 PRK10624 L-1,2-propanediol oxi 64.3 56 0.0012 26.2 8.1 61 25-86 31-104 (382)
395 PRK05928 hemD uroporphyrinogen 64.2 35 0.00076 24.8 6.4 91 25-120 2-104 (249)
396 cd05212 NAD_bind_m-THF_DH_Cycl 64.1 43 0.00093 23.3 6.5 57 20-77 24-80 (140)
397 cd06285 PBP1_LacI_like_7 Ligan 63.6 48 0.001 24.1 7.1 38 39-76 20-63 (265)
398 PRK11041 DNA-binding transcrip 63.3 24 0.00053 26.4 5.6 56 22-77 33-100 (309)
399 TIGR00333 nrdI ribonucleoside- 63.0 46 0.001 22.8 6.5 65 35-104 5-69 (125)
400 COG0493 GltD NADPH-dependent g 62.8 40 0.00086 28.1 7.1 23 59-82 200-222 (457)
401 PF02882 THF_DHG_CYH_C: Tetrah 62.5 54 0.0012 23.4 7.7 56 21-77 33-88 (160)
402 cd01080 NAD_bind_m-THF_DH_Cycl 62.4 35 0.00077 24.4 6.0 54 23-77 43-96 (168)
403 TIGR01849 PHB_depoly_PhaZ poly 62.3 33 0.00071 28.3 6.4 76 25-111 103-183 (406)
404 PRK09959 hybrid sensory histid 62.0 34 0.00074 31.2 7.1 79 23-103 957-1036(1197)
405 PRK09483 response regulator; P 62.0 48 0.0011 23.1 6.7 79 25-104 2-82 (217)
406 PF02601 Exonuc_VII_L: Exonucl 61.9 39 0.00084 26.3 6.6 80 22-101 12-111 (319)
407 PRK04148 hypothetical protein; 61.6 25 0.00055 24.4 4.9 34 23-58 16-49 (134)
408 COG1184 GCD2 Translation initi 61.6 60 0.0013 25.8 7.5 76 25-105 146-229 (301)
409 PRK06395 phosphoribosylamine-- 61.3 83 0.0018 25.9 8.7 32 23-55 1-32 (435)
410 COG1214 Inactive homolog of me 61.1 13 0.00028 27.8 3.7 44 68-112 58-103 (220)
411 PRK09581 pleD response regulat 61.1 49 0.0011 26.0 7.2 78 25-103 3-82 (457)
412 TIGR01839 PHA_synth_II poly(R) 61.1 11 0.00024 32.4 3.6 66 38-112 237-304 (560)
413 cd01543 PBP1_XylR Ligand-bindi 60.9 48 0.001 24.2 6.7 39 38-76 18-58 (265)
414 TIGR00640 acid_CoA_mut_C methy 60.9 51 0.0011 22.6 6.9 41 37-78 19-63 (132)
415 PRK10955 DNA-binding transcrip 60.7 56 0.0012 23.0 7.1 76 25-104 2-78 (232)
416 cd06271 PBP1_AglR_RafR_like Li 60.3 42 0.00091 24.2 6.3 39 39-77 24-68 (268)
417 cd00363 PFK Phosphofructokinas 60.2 7.3 0.00016 31.1 2.3 39 65-103 89-127 (338)
418 PRK14072 6-phosphofructokinase 60.1 7.7 0.00017 31.9 2.5 38 66-103 101-138 (416)
419 COG4594 FecB ABC-type Fe3+-cit 60.1 38 0.00083 26.6 6.0 28 21-54 46-73 (310)
420 PRK09423 gldA glycerol dehydro 59.8 34 0.00075 27.2 6.1 76 25-105 30-116 (366)
421 PRK12419 riboflavin synthase s 59.7 50 0.0011 23.7 6.3 86 16-101 2-110 (158)
422 PTZ00445 p36-lilke protein; Pr 59.4 51 0.0011 25.0 6.5 64 37-110 31-104 (219)
423 TIGR02955 TMAO_TorT TMAO reduc 59.2 33 0.00071 25.8 5.7 59 40-103 21-87 (295)
424 PRK06555 pyrophosphate--fructo 59.1 10 0.00022 31.2 2.9 40 64-103 108-147 (403)
425 PRK05452 anaerobic nitric oxid 59.0 1.1E+02 0.0023 25.6 9.2 55 24-79 251-314 (479)
426 PRK00286 xseA exodeoxyribonucl 59.0 58 0.0013 26.6 7.4 80 22-101 133-228 (438)
427 cd08176 LPO Lactadehyde:propan 58.6 69 0.0015 25.6 7.7 61 25-86 29-102 (377)
428 PRK13557 histidine kinase; Pro 58.5 63 0.0014 26.0 7.5 82 23-104 414-496 (540)
429 PRK15454 ethanol dehydrogenase 58.4 85 0.0018 25.4 8.2 61 25-86 50-123 (395)
430 PRK00861 putative lipid kinase 58.2 83 0.0018 24.1 8.6 56 24-80 2-69 (300)
431 COG3947 Response regulator con 58.0 23 0.00051 28.4 4.7 78 25-104 1-79 (361)
432 TIGR01082 murC UDP-N-acetylmur 58.0 89 0.0019 25.4 8.3 52 27-78 2-68 (448)
433 PRK09492 treR trehalose repres 57.3 34 0.00073 25.8 5.5 56 22-77 60-127 (315)
434 COG0426 FpaA Uncharacterized f 57.2 39 0.00084 27.8 6.0 52 26-78 248-306 (388)
435 PRK08811 uroporphyrinogen-III 57.0 86 0.0019 23.9 8.6 101 15-120 9-118 (266)
436 PRK14573 bifunctional D-alanyl 56.9 1E+02 0.0022 27.4 9.0 54 25-78 5-73 (809)
437 cd02070 corrinoid_protein_B12- 56.8 73 0.0016 23.1 7.4 94 24-119 82-188 (201)
438 cd08186 Fe-ADH8 Iron-containin 56.8 1E+02 0.0022 24.7 8.4 61 25-86 27-101 (383)
439 PRK10840 transcriptional regul 56.7 69 0.0015 22.8 7.1 81 24-104 3-87 (216)
440 PLN02699 Bifunctional molybdop 56.6 75 0.0016 27.8 8.0 43 37-79 211-260 (659)
441 PRK12361 hypothetical protein; 56.4 95 0.0021 26.2 8.4 59 22-81 240-310 (547)
442 PRK13059 putative lipid kinase 56.1 91 0.002 24.0 9.3 57 25-81 2-69 (295)
443 PTZ00286 6-phospho-1-fructokin 56.0 12 0.00025 31.4 2.9 47 66-112 174-233 (459)
444 PTZ00254 40S ribosomal protein 55.8 85 0.0019 24.2 7.3 30 68-104 118-148 (249)
445 PRK03369 murD UDP-N-acetylmura 55.3 90 0.002 25.9 8.0 32 23-55 11-42 (488)
446 PRK09860 putative alcohol dehy 55.3 1.1E+02 0.0024 24.6 8.7 61 25-86 32-105 (383)
447 COG3199 Predicted inorganic po 55.3 19 0.00042 29.1 3.8 35 67-107 99-133 (355)
448 cd01461 vWA_interalpha_trypsin 55.2 39 0.00086 22.9 5.1 52 70-123 102-161 (171)
449 PRK11466 hybrid sensory histid 55.1 60 0.0013 28.6 7.3 79 23-103 680-760 (914)
450 cd08181 PPD-like 1,3-propanedi 55.0 1.1E+02 0.0023 24.4 8.7 61 25-86 26-100 (357)
451 PRK07116 flavodoxin; Provision 54.9 69 0.0015 22.2 8.4 36 68-104 76-113 (160)
452 cd06294 PBP1_ycjW_transcriptio 54.8 57 0.0012 23.6 6.2 39 39-77 25-69 (270)
453 cd08190 HOT Hydroxyacid-oxoaci 54.8 1E+02 0.0023 25.1 8.2 61 25-86 24-97 (414)
454 PRK02006 murD UDP-N-acetylmura 54.5 1.1E+02 0.0024 25.4 8.4 32 24-56 7-38 (498)
455 COG1587 HemD Uroporphyrinogen- 54.4 89 0.0019 23.4 7.9 95 24-123 1-105 (248)
456 PRK14571 D-alanyl-alanine synt 54.4 96 0.0021 23.7 8.1 50 25-74 1-59 (299)
457 PRK07085 diphosphate--fructose 54.3 13 0.00028 31.9 2.9 37 67-103 163-199 (555)
458 PRK10401 DNA-binding transcrip 54.3 42 0.0009 25.8 5.6 55 23-77 58-124 (346)
459 cd08182 HEPD Hydroxyethylphosp 54.1 66 0.0014 25.6 6.8 61 25-86 24-94 (367)
460 cd08171 GlyDH-like2 Glycerol d 53.9 44 0.00095 26.4 5.8 77 24-105 22-110 (345)
461 TIGR03725 bact_YeaZ universal 53.8 20 0.00044 26.1 3.6 46 68-114 54-101 (202)
462 cd06280 PBP1_LacI_like_4 Ligan 53.8 34 0.00074 24.9 4.9 39 39-77 20-64 (263)
463 PRK14569 D-alanyl-alanine synt 53.5 1E+02 0.0022 23.7 9.3 51 24-74 3-62 (296)
464 TIGR02477 PFKA_PPi diphosphate 53.2 13 0.00029 31.7 2.8 37 67-103 160-196 (539)
465 cd06291 PBP1_Qymf_like Ligand 53.1 80 0.0017 22.8 6.8 39 39-77 20-64 (265)
466 cd06272 PBP1_hexuronate_repres 53.1 47 0.001 24.1 5.5 39 39-77 20-60 (261)
467 cd08180 PDD 1,3-propanediol de 52.7 1.1E+02 0.0023 24.0 7.7 78 24-103 22-115 (332)
468 cd01544 PBP1_GalR Ligand-bindi 52.3 47 0.001 24.4 5.4 36 39-76 25-60 (270)
469 cd05564 PTS_IIB_chitobiose_lic 52.2 61 0.0013 20.8 6.1 56 39-103 18-77 (96)
470 TIGR01818 ntrC nitrogen regula 52.1 64 0.0014 26.1 6.6 76 27-104 1-77 (463)
471 cd06275 PBP1_PurR Ligand-bindi 51.9 89 0.0019 22.6 7.9 39 39-77 20-64 (269)
472 TIGR00237 xseA exodeoxyribonuc 51.8 1.1E+02 0.0024 25.3 7.9 80 22-101 127-223 (432)
473 PRK12480 D-lactate dehydrogena 51.6 56 0.0012 25.9 6.0 52 25-77 2-54 (330)
474 PRK14194 bifunctional 5,10-met 50.8 77 0.0017 25.1 6.6 56 21-77 156-211 (301)
475 cd06311 PBP1_ABC_sugar_binding 50.5 97 0.0021 22.6 6.9 38 40-77 21-69 (274)
476 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.5 68 0.0015 20.8 6.4 76 26-106 1-82 (126)
477 PF00289 CPSase_L_chain: Carba 50.3 26 0.00056 23.3 3.4 32 25-57 3-34 (110)
478 TIGR03521 GldG gliding-associa 50.2 97 0.0021 26.4 7.5 77 22-101 181-266 (552)
479 PRK13057 putative lipid kinase 50.1 82 0.0018 24.0 6.6 43 38-80 16-62 (287)
480 PLN02251 pyrophosphate-depende 49.7 17 0.00037 31.2 3.0 37 67-103 189-225 (568)
481 PRK08227 autoinducer 2 aldolas 49.6 32 0.0007 26.6 4.2 61 42-106 165-226 (264)
482 PRK15395 methyl-galactoside AB 49.6 93 0.002 24.0 6.9 54 24-77 24-90 (330)
483 COG0569 TrkA K+ transport syst 49.5 36 0.00078 25.4 4.4 52 25-77 1-52 (225)
484 PRK06830 diphosphate--fructose 49.4 17 0.00037 30.3 2.8 37 67-103 171-207 (443)
485 PRK10339 DNA-binding transcrip 49.4 1.1E+02 0.0025 23.1 7.4 35 39-76 88-122 (327)
486 TIGR03682 arCOG04112 arCOG0411 49.3 65 0.0014 25.4 6.0 63 22-84 210-278 (308)
487 PLN02699 Bifunctional molybdop 49.2 1.8E+02 0.0038 25.6 9.1 63 17-79 451-535 (659)
488 cd07766 DHQ_Fe-ADH Dehydroquin 49.2 1E+02 0.0022 24.0 7.1 76 25-105 24-112 (332)
489 cd08550 GlyDH-like Glycerol_de 49.1 63 0.0014 25.5 6.0 76 25-105 23-109 (349)
490 PF04321 RmlD_sub_bind: RmlD s 48.9 24 0.00053 27.0 3.5 58 25-82 1-65 (286)
491 cd08188 Fe-ADH4 Iron-containin 48.5 1.4E+02 0.003 23.9 8.6 61 25-86 29-102 (377)
492 cd08192 Fe-ADH7 Iron-containin 48.5 1.4E+02 0.003 23.8 8.3 62 25-87 25-99 (370)
493 PLN03028 pyrophosphate--fructo 48.4 18 0.0004 31.3 3.0 37 67-103 172-208 (610)
494 cd01422 MGS Methylglyoxal synt 48.2 80 0.0017 21.0 5.7 63 38-101 34-105 (115)
495 COG5426 Uncharacterized membra 48.1 33 0.00072 25.9 3.9 37 39-77 36-78 (254)
496 PRK10651 transcriptional regul 47.8 89 0.0019 21.4 7.1 82 22-104 4-87 (216)
497 PLN02204 diacylglycerol kinase 47.7 31 0.00066 30.0 4.2 61 22-82 157-232 (601)
498 cd00532 MGS-like MGS-like doma 47.7 77 0.0017 20.7 5.6 63 39-101 33-103 (112)
499 TIGR03702 lip_kinase_YegS lipi 47.4 53 0.0012 25.2 5.2 42 39-80 18-64 (293)
500 PRK10360 DNA-binding transcrip 47.4 89 0.0019 21.3 6.1 76 25-104 2-79 (196)
No 1
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=5.9e-28 Score=176.10 Aligned_cols=100 Identities=47% Similarity=0.895 Sum_probs=91.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+++|++|||+|||++++++++++.|.++.+++++..+.+.+...++|+||||+||++|.+.+...++|+++.+++|+|||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV 80 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 47899999999999999999999999999999875566666666899999999999999988888999999778999999
Q ss_pred chHHHHHHHHhCCeeeeCCC
Q 033201 104 CMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~~ 123 (125)
|+|||.|+++|||+|.+.++
T Consensus 81 CLGHQai~~~fGg~V~~a~~ 100 (191)
T COG0512 81 CLGHQAIAEAFGGKVVRAKE 100 (191)
T ss_pred CccHHHHHHHhCCEEEecCC
Confidence 99999999999999998763
No 2
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=1.1e-27 Score=175.13 Aligned_cols=98 Identities=44% Similarity=0.838 Sum_probs=87.6
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
||++|||+|+|++++.++|++.|+++.++++++.+.+++...++|+|||||||++|.+.+...++++.+.+++|+||||+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999987666777765689999999999999887666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+||.++||+|.+.+.
T Consensus 81 G~Q~la~a~Gg~v~~~~~ 98 (187)
T PRK08007 81 GHQAMAQAFGGKVVRAAK 98 (187)
T ss_pred HHHHHHHHcCCEEEeCCC
Confidence 999999999999998764
No 3
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=2.4e-27 Score=173.46 Aligned_cols=98 Identities=44% Similarity=0.849 Sum_probs=87.6
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
||++||++|+|++++.++|++.|+++.+++++..+.+++...++|+|||+|||++|.+.+....+++.+++++|+||||+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~ 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999987566777876689999999999999887666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 81 G~Qlla~~~GG~v~~~~~ 98 (191)
T PRK06774 81 GHQALGQAFGARVVRARQ 98 (191)
T ss_pred HHHHHHHHhCCEEEeCCc
Confidence 999999999999998753
No 4
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.95 E-value=4.7e-27 Score=173.03 Aligned_cols=98 Identities=45% Similarity=0.893 Sum_probs=87.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
||++||++|+|++++.++|++.|+++.+++.++.+.+++...++|+|||+|||++|++.......++.+.+++|+||||+
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence 58999999999999999999999999999987566667665689999999999999887666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 81 G~Qlla~~lGg~V~~~~~ 98 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAER 98 (195)
T ss_pred HHHHHHHHcCCEEeeCCC
Confidence 999999999999998753
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.94 E-value=1.5e-26 Score=169.17 Aligned_cols=97 Identities=46% Similarity=0.873 Sum_probs=86.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
+|++||++|+|++++.++|++.|+++.+++++..+.+++...++|||||+|||+++.+.....++++++.+++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~ 80 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL 80 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence 48999999999999999999999999999976556777766679999999999999876555678887777899999999
Q ss_pred HHHHHHHHhCCeeeeCC
Q 033201 106 GLQCIGEAFGGESSKMS 122 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~ 122 (125)
|||+|+.++||+|.+.+
T Consensus 81 G~Qll~~~~GG~v~~~~ 97 (188)
T TIGR00566 81 GHQAMGQAFGGDVVRAN 97 (188)
T ss_pred HHHHHHHHcCCEEeeCC
Confidence 99999999999999875
No 6
>PLN02335 anthranilate synthase
Probab=99.94 E-value=3.6e-26 Score=171.30 Aligned_cols=102 Identities=86% Similarity=1.434 Sum_probs=89.0
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
.+..++|+|||++++|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|++.+...++++++..++|+
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPL 94 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCE
Confidence 35567999999999999999999999999999999865566666555799999999999998876656777777778999
Q ss_pred EEEchHHHHHHHHhCCeeeeCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
||||+|||+|+.++||+|.+.+
T Consensus 95 LGIClG~QlLa~alGg~v~~~~ 116 (222)
T PLN02335 95 FGVCMGLQCIGEAFGGKIVRSP 116 (222)
T ss_pred EEecHHHHHHHHHhCCEEEeCC
Confidence 9999999999999999998865
No 7
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.94 E-value=3.6e-26 Score=167.02 Aligned_cols=98 Identities=55% Similarity=1.031 Sum_probs=85.1
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
||+|||++|+|++++.++|+++|+++++++++....+++...++||||++|||+++.+.....++++++.+++|+||||+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999986444555554579999999999999776666678877777899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 81 G~Qlla~alGg~v~~~~~ 98 (189)
T PRK05670 81 GHQAIGEAFGGKVVRAKE 98 (189)
T ss_pred HHHHHHHHhCCEEEecCC
Confidence 999999999999998764
No 8
>CHL00101 trpG anthranilate synthase component 2
Probab=99.94 E-value=5.7e-26 Score=166.34 Aligned_cols=98 Identities=51% Similarity=0.897 Sum_probs=84.4
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
+|++|||+|+|++++.++|++.|+++++++.+..+.+++...++|||||+|||+++.+......+++.++.++|+||||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 48999999999999999999999999999876556666654579999999999999776544555655678899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 81 G~Qlla~~~Gg~V~~~~~ 98 (190)
T CHL00101 81 GHQSIGYLFGGKIIKAPK 98 (190)
T ss_pred hHHHHHHHhCCEEEECCC
Confidence 999999999999998764
No 9
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.94 E-value=8.9e-26 Score=165.16 Aligned_cols=97 Identities=32% Similarity=0.606 Sum_probs=83.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.|||+||||+|+|++++.++|++.|+++++++++....+++. ++|+|||+|||+++.+.....++|+++++++|+|||
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI 78 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV 78 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE
Confidence 379999999999999999999999999999987644444554 799999999999775555566788777788999999
Q ss_pred chHHHHHHHHhCCeeeeCC
Q 033201 104 CMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~ 122 (125)
|+|||+|+.++||+|.+++
T Consensus 79 ClG~Qlla~~~Gg~V~~~~ 97 (190)
T PRK06895 79 CLGHQTLCEFFGGELYNLN 97 (190)
T ss_pred cHHHHHHHHHhCCeEeecC
Confidence 9999999999999998764
No 10
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=8.6e-26 Score=165.68 Aligned_cols=98 Identities=45% Similarity=0.877 Sum_probs=85.6
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
||++||++|+|++++.++|+++|+.+++++++..+.+++...++|++|++|||+++++.....++++.+++++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl 80 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence 48999999999999999999999999999987445555554579999999999999877666677777788999999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 81 G~Qlia~a~Gg~v~~~~~ 98 (193)
T PRK08857 81 GHQAIAQVFGGQVVRARQ 98 (193)
T ss_pred HHHHHHHHhCCEEEeCCC
Confidence 999999999999998764
No 11
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.93 E-value=3.5e-25 Score=164.64 Aligned_cols=96 Identities=38% Similarity=0.714 Sum_probs=84.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
+||++||++|+|++++.++|++.|+.+++++++ .+.+++...++|+|||+|||+++.+.....++++.+..++||||||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC 80 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence 589999999999999999999999999999986 4567776568999999999999987765567776654679999999
Q ss_pred hHHHHHHHHhCCeeeeC
Q 033201 105 MGLQCIGEAFGGESSKM 121 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~ 121 (125)
+|||+|+.++||+|.+.
T Consensus 81 lG~Qlla~alGG~V~~~ 97 (208)
T PRK05637 81 LGFQALLEHHGGKVEPC 97 (208)
T ss_pred HHHHHHHHHcCCeeccC
Confidence 99999999999999864
No 12
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=2e-23 Score=155.73 Aligned_cols=99 Identities=44% Similarity=0.826 Sum_probs=83.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL 101 (125)
|||+++|++++++.++.++|++.|+.+++++++....++.. ..++|||||+|||+++.+.....++++++ ++++|+|
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999999999987632222322 23799999999999987666566888885 7789999
Q ss_pred EEchHHHHHHHHhCCeeeeCCC
Q 033201 102 GVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|||+|+.++||+|.+.+.
T Consensus 81 GIC~G~Qlla~a~GG~v~~~~~ 102 (214)
T PRK07765 81 GVCLGHQAIGVAFGATVDRAPE 102 (214)
T ss_pred EEccCHHHHHHHhCCEEeeCCC
Confidence 9999999999999999998653
No 13
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=5.4e-23 Score=149.38 Aligned_cols=97 Identities=56% Similarity=0.981 Sum_probs=79.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G 106 (125)
|+|+|++++|++++.++|++.|+++++++++.......+..++||||++|||+++.+......+++.+.+++|+||||+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence 68999999999999999999999999999864322111224799999999999987765444444446778999999999
Q ss_pred HHHHHHHhCCeeeeCCC
Q 033201 107 LQCIGEAFGGESSKMSS 123 (125)
Q Consensus 107 ~QlLa~a~Gg~v~~~~~ 123 (125)
||+|+.++||+|.+.+.
T Consensus 81 ~Qlla~~~Gg~v~~~~~ 97 (184)
T cd01743 81 HQAIAEAFGGKVVRAPE 97 (184)
T ss_pred HHHHHHHhCCEEEeCCC
Confidence 99999999999998764
No 14
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.5e-22 Score=149.53 Aligned_cols=97 Identities=26% Similarity=0.445 Sum_probs=81.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV 98 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~ 98 (125)
++|+|+|++.++.+.+.+++++.| ...++++++ .+.+++...++||+||+|||.++++.+ ...++|+++ ..++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence 578999999999999999999999 666666665 455666656789999999999998765 246778775 5678
Q ss_pred CEEEEchHHHHHHHHhCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
||||||+|||+||.++||+|.+.+
T Consensus 81 pvLGIC~G~Ql~A~~lGg~V~~~~ 104 (198)
T COG0518 81 PVLGICLGHQLLAKALGGKVERGP 104 (198)
T ss_pred CEEEEChhHHHHHHHhCCEEeccC
Confidence 899999999999999999999876
No 15
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.1e-22 Score=168.65 Aligned_cols=98 Identities=35% Similarity=0.661 Sum_probs=82.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
+||++|||+|+|++++.++|++.|+++.+++.+. ...+++...++|+|||||||++|.+.+...++++.+..++|||
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence 5899999999999999999999999999998642 1245555457899999999999987654445555566789999
Q ss_pred EEchHHHHHHHHhCCeeeeCC
Q 033201 102 GVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|||+|||+|+.++||+|.+.+
T Consensus 82 GIClG~QlLa~a~GG~V~~~~ 102 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQAG 102 (531)
T ss_pred EEcHHHHHHHHhcCCEEEeCC
Confidence 999999999999999999754
No 16
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.88 E-value=6.8e-23 Score=148.96 Aligned_cols=94 Identities=37% Similarity=0.620 Sum_probs=80.8
Q ss_pred EEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 28 ~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+|||++++|++++.+++++.|.++++++.+. ...+. ...++|||||+|||+++++.....++++++ +.++|+||||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 6899999999999999999999999999863 22222 245899999999999999866667888885 6799999999
Q ss_pred hHHHHHHHHhCCeeeeCC
Q 033201 105 MGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~ 122 (125)
+|||+|+.++||+|.+.+
T Consensus 80 ~G~Q~la~~~G~~v~~~~ 97 (192)
T PF00117_consen 80 LGHQILAHALGGKVVPSP 97 (192)
T ss_dssp HHHHHHHHHTTHEEEEEE
T ss_pred ehhhhhHHhcCCcccccc
Confidence 999999999999998764
No 17
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.88 E-value=3.3e-22 Score=157.04 Aligned_cols=99 Identities=31% Similarity=0.593 Sum_probs=89.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~Pv 100 (125)
..+.+|+++|+ +..+++.|.|.++|+++.++|++ .+.+++...++|||+||-||++|...+...+.|+++ +.++|+
T Consensus 177 ~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPi 253 (368)
T COG0505 177 EPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPI 253 (368)
T ss_pred CCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCe
Confidence 34679999999 77899999999999999999986 678888777999999999999998777778999996 777799
Q ss_pred EEEchHHHHHHHHhCCeeeeCCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
||||+|||+|+.|+||+..|++.
T Consensus 254 fGICLGHQllalA~Ga~T~KmkF 276 (368)
T COG0505 254 FGICLGHQLLALALGAKTYKMKF 276 (368)
T ss_pred EEEcHHHHHHHHhcCCceeeccc
Confidence 99999999999999999999874
No 18
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.88 E-value=6.7e-22 Score=144.17 Aligned_cols=95 Identities=28% Similarity=0.551 Sum_probs=80.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEch
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~ 105 (125)
|+|||++++|..++.++|++.|+++++++++ .+.+++...++|||||+||+.++++... ..++++ ++.++|+||||+
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY 78 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence 5899999999999999999999999999876 3456665445779999999998876543 466776 478899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 79 G~Qll~~~lgg~v~~~~~ 96 (188)
T TIGR00888 79 GMQLMAKQLGGEVGRAEK 96 (188)
T ss_pred HHHHHHHhcCceEecCCC
Confidence 999999999999987653
No 19
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.88 E-value=7.4e-22 Score=157.96 Aligned_cols=97 Identities=30% Similarity=0.554 Sum_probs=84.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL 101 (125)
.++||++||+ ++++++.++|+++|+++.+++++ .+.+++...++|||||+|||++|.+...+.+.++++ +.++|+|
T Consensus 191 ~~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 191 YQLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CCCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEE
Confidence 3689999999 78889999999999999999876 456677656899999999999997766666777774 6689999
Q ss_pred EEchHHHHHHHHhCCeeeeCC
Q 033201 102 GVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|||+|||+|+.++||++.+++
T Consensus 268 GIClGhQlLa~a~Gg~v~k~~ 288 (382)
T CHL00197 268 GICMGHQILSLALEAKTFKLK 288 (382)
T ss_pred EEcHHHHHHHHHhCCEEeccC
Confidence 999999999999999998875
No 20
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.87 E-value=3.6e-22 Score=165.74 Aligned_cols=98 Identities=53% Similarity=0.974 Sum_probs=84.7
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
||++|||+|+|++++.+.|++.|.+ +.+++++..+.+++...++|+|||+|||++|.+.+...++++.+..++|+||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC 80 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC 80 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence 5899999999999999999999996 777766555677776567999999999999987766667777777789999999
Q ss_pred hHHHHHHHHhCCeeeeCCC
Q 033201 105 MGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~ 123 (125)
+|||+|+.++||+|.+.+.
T Consensus 81 lG~QlLa~a~Gg~V~~~~~ 99 (534)
T PRK14607 81 LGHQAIGYAFGGKIVHAKR 99 (534)
T ss_pred HHHHHHHHHcCCeEecCCc
Confidence 9999999999999998764
No 21
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.87 E-value=8.8e-22 Score=158.49 Aligned_cols=96 Identities=34% Similarity=0.585 Sum_probs=83.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
.+|+++|+ +..+++.++|+++|++++++|++ .+.+++...++|||||||||++|.+.....+.++++..++|+||||
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC 317 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC 317 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence 68999999 66899999999999999999986 5667776568999999999999987766677778754579999999
Q ss_pred hHHHHHHHHhCCeeeeCCC
Q 033201 105 MGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~ 123 (125)
+|||+|+.|+||++.+++.
T Consensus 318 LGhQlLa~AlGGkv~K~~~ 336 (415)
T PLN02771 318 MGHQLLGQALGGKTFKMKF 336 (415)
T ss_pred HHHHHHHHhcCCeEEECCC
Confidence 9999999999999998764
No 22
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.87 E-value=1.5e-21 Score=141.50 Aligned_cols=93 Identities=31% Similarity=0.571 Sum_probs=78.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~ 105 (125)
|+|+|++++ +++.++|++.|..+++++++ .+.+++...++||||++|||+++.+.....++++++ ++++|+||||+
T Consensus 1 i~i~d~g~~--~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~ 77 (178)
T cd01744 1 VVVIDFGVK--HNILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL 77 (178)
T ss_pred CEEEecCcH--HHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence 578999776 47899999999999999986 345555445799999999999887766667888885 77899999999
Q ss_pred HHHHHHHHhCCeeeeCC
Q 033201 106 GLQCIGEAFGGESSKMS 122 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~ 122 (125)
|+|+|+.++||+|.+.+
T Consensus 78 G~Q~l~~~~Gg~v~~~~ 94 (178)
T cd01744 78 GHQLLALALGAKTYKMK 94 (178)
T ss_pred HHHHHHHHcCCceecCC
Confidence 99999999999998754
No 23
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.86 E-value=2.3e-21 Score=146.75 Aligned_cols=99 Identities=21% Similarity=0.424 Sum_probs=80.1
Q ss_pred CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC-CH-HHHhcCCCCEEEECCCCCCcCCchHH----HHHHHH-
Q 033201 22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL-TV-EELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE- 93 (125)
Q Consensus 22 ~~~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~-~~-~~~~~~~~dgiIi~GG~~~~~~~~~~----~~~I~~- 93 (125)
-.++||+||++.+ ++..++.++|++.|.++.++++... .. +++ .+|||+||+|||+++++..++ .++|++
T Consensus 5 ~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~ 82 (239)
T PRK06490 5 RDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVP 82 (239)
T ss_pred CCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence 3567999998766 6778999999999999998875421 11 223 379999999999999876543 567777
Q ss_pred hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 94 LGPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 94 ~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
++.++|+||||+|||+|++++||+|.+.+
T Consensus 83 ~~~~~PvLGIC~G~Qlla~alGG~V~~~~ 111 (239)
T PRK06490 83 LKENKPFLGICLGAQMLARHLGARVAPHP 111 (239)
T ss_pred HHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence 47889999999999999999999999865
No 24
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.86 E-value=3.2e-21 Score=153.47 Aligned_cols=96 Identities=32% Similarity=0.590 Sum_probs=82.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG 102 (125)
++||+++|+ +..+++.++|++.|+.+.+++++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus 177 ~~~I~viD~--G~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG 253 (360)
T PRK12564 177 KYKVVAIDF--GVKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG 253 (360)
T ss_pred CCEEEEEeC--CcHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 579999999 56789999999999999999976 456677555799999999999987665566788885 67899999
Q ss_pred EchHHHHHHHHhCCeeeeCC
Q 033201 103 VCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~ 122 (125)
||+|||+|+.++||++.+++
T Consensus 254 IClG~QlLa~a~Gg~v~kl~ 273 (360)
T PRK12564 254 ICLGHQLLALALGAKTYKMK 273 (360)
T ss_pred ECHHHHHHHHHhCCcEeccC
Confidence 99999999999999999875
No 25
>PRK13566 anthranilate synthase; Provisional
Probab=99.86 E-value=3.8e-21 Score=163.98 Aligned_cols=102 Identities=36% Similarity=0.636 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCC
Q 033201 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPT 97 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~ 97 (125)
..++.++||+||||++++.+++.++|++.|+++.+++++. ..+.+...++|+|||+|||+++.+.. ..++|+++ +++
T Consensus 521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~ 598 (720)
T PRK13566 521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARN 598 (720)
T ss_pred CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCC
Confidence 4667889999999999999999999999999999999763 33344445799999999999987654 45788874 788
Q ss_pred CCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 98 VPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+||||||+|||+|+.++||+|.+.+
T Consensus 599 iPILGIClG~QlLa~alGG~V~~~~ 623 (720)
T PRK13566 599 LPIFGVCLGLQAIVEAFGGELGQLA 623 (720)
T ss_pred CcEEEEehhHHHHHHHcCCEEEECC
Confidence 9999999999999999999998865
No 26
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86 E-value=2.8e-21 Score=139.53 Aligned_cols=95 Identities=31% Similarity=0.566 Sum_probs=75.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~ 105 (125)
|++||+++++..++.++|++.|+++++++.+. ..++....++||||++||+.++++... ..+.+.+ +.++|+||||+
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~-~~~~~~~~~~~~PilGIC~ 78 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDA-PRVDPEIFELGVPVLGICY 78 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCccccccccc-chhhHHHHhcCCCEEEEcH
Confidence 57999999999999999999999999998763 333333347999999999998776432 1223332 56899999999
Q ss_pred HHHHHHHHhCCeeeeCCC
Q 033201 106 GLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~ 123 (125)
|||+|+.++||+|.+.+.
T Consensus 79 G~Qll~~~~gg~v~~~~~ 96 (181)
T cd01742 79 GMQLIAKALGGKVERGDK 96 (181)
T ss_pred HHHHHHHhcCCeEEeCCC
Confidence 999999999999998653
No 27
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.86 E-value=3e-21 Score=167.04 Aligned_cols=98 Identities=39% Similarity=0.642 Sum_probs=82.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcCCchH---HHHHHHHhC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELG 95 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~~~~~---~~~~I~~~~ 95 (125)
|||++|||+|+|++++.++|++. |.++.++++++.+.+++.. ..+|+|||+|||++|....+ ..++|+++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 68999999999999999999998 9999999988666766532 37999999999999864433 35666654
Q ss_pred CCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 96 PTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
.++||||||+|||+|+.++||+|.+++.
T Consensus 161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~~ 188 (918)
T PLN02889 161 RDIPILGVCLGHQALGYVHGARIVHAPE 188 (918)
T ss_pred CCCcEEEEcHHHHHHHHhcCceEEeCCC
Confidence 4699999999999999999999998763
No 28
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.86 E-value=5.4e-21 Score=137.07 Aligned_cols=101 Identities=85% Similarity=1.437 Sum_probs=93.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHH-HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l-~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
.....|++||++|+|++++.++| -+.|+.+.++++|+.+.+++...++++++|++||+.|.|.+...+.|+++..++|+
T Consensus 16 ~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~ 95 (223)
T KOG0026|consen 16 KQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPL 95 (223)
T ss_pred cccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCce
Confidence 34457899999999999999999 77899999999999999999888999999999999999887778999999889999
Q ss_pred EEEchHHHHHHHHhCCeeeeCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
||||.|.|-|.++|||+|...+
T Consensus 96 fGvCMGlQCi~e~fGGkv~~a~ 117 (223)
T KOG0026|consen 96 FGVCMGLQCIGEAFGGKIVRSP 117 (223)
T ss_pred eeeehhhhhhhhhhCcEEeccC
Confidence 9999999999999999998765
No 29
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.85 E-value=5.6e-21 Score=151.73 Aligned_cols=96 Identities=28% Similarity=0.589 Sum_probs=82.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL 101 (125)
.+++|+++|+ ++..++.++|++.|+.+++++++ .+.+++...++|||||+|||++|.+.....++++++ ++ +|+|
T Consensus 166 ~~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 166 GGKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPIL 241 (354)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEE
Confidence 3579999999 68899999999999999999976 456666555799999999999987766666788875 54 9999
Q ss_pred EEchHHHHHHHHhCCeeeeCC
Q 033201 102 GVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|||+|||+|+.++||++.+++
T Consensus 242 GIClG~QlLa~a~Gg~v~kl~ 262 (354)
T PRK12838 242 GICLGHQLIALALGADTEKLP 262 (354)
T ss_pred EECHHHHHHHHHhCCEEecCC
Confidence 999999999999999999875
No 30
>PRK00758 GMP synthase subunit A; Validated
Probab=99.85 E-value=6.7e-21 Score=138.46 Aligned_cols=92 Identities=30% Similarity=0.524 Sum_probs=74.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCC-CEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~-dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
+|+|||++++|.+++.++|++.|+++.+++++ .+.+++. ++ |||||+||| +..+.....++++ +.++|+||||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC 74 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC 74 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence 48999999999999999999999999998865 4556665 46 999999998 3322222344554 4579999999
Q ss_pred hHHHHHHHHhCCeeeeCCC
Q 033201 105 MGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~ 123 (125)
+|||+|++++||+|.+.+.
T Consensus 75 ~G~Q~L~~a~Gg~v~~~~~ 93 (184)
T PRK00758 75 LGHQLIAKAFGGEVGRGEY 93 (184)
T ss_pred HHHHHHHHhcCcEEecCCC
Confidence 9999999999999988653
No 31
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.85 E-value=6.5e-21 Score=151.56 Aligned_cols=95 Identities=33% Similarity=0.619 Sum_probs=81.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
+||+++|+ +..+++.++|++.|+.++++|++ .+.+++....+|||||+|||++|.+.....++++++-.++|+||||
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC 250 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC 250 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 58999999 67789999999999999999876 4566765456799999999999876666677888852389999999
Q ss_pred hHHHHHHHHhCCeeeeCC
Q 033201 105 MGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~ 122 (125)
+|||+|+.++||++.+++
T Consensus 251 lG~QlLa~a~Gg~v~kl~ 268 (358)
T TIGR01368 251 LGHQLLALAFGAKTYKMK 268 (358)
T ss_pred HHHHHHHHHhCCceeccC
Confidence 999999999999998865
No 32
>PLN02347 GMP synthetase
Probab=99.85 E-value=1.1e-20 Score=156.74 Aligned_cols=97 Identities=24% Similarity=0.392 Sum_probs=81.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch--HHH-HHHHHh-CCCCCE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISL-QTVLEL-GPTVPL 100 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~--~~~-~~I~~~-~~~~Pv 100 (125)
.+|+|||++++|++++.+++++.|+.+++++++ .+.+++...++|||||||||.++++.+ .+. .+++.+ +.++|+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence 489999999999999999999999999999876 567777655799999999999987543 222 333333 568999
Q ss_pred EEEchHHHHHHHHhCCeeeeCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
||||+|||+|+.++||+|.+.+
T Consensus 90 LGIClG~QlLa~alGG~V~~~~ 111 (536)
T PLN02347 90 LGICYGMQLIVQKLGGEVKPGE 111 (536)
T ss_pred EEECHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999764
No 33
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.85 E-value=1.5e-20 Score=160.19 Aligned_cols=101 Identities=33% Similarity=0.616 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCC
Q 033201 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~ 98 (125)
.++.++||+|||+++++.+++.++|++.|+++.+++.+. ..+.+...++|+|||+|||+++.+.. ..++|++ ++.++
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~-~~~~I~~~~~~~i 589 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFD-VAGTIDAALARGL 589 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhcc-cHHHHHHHHHCCC
Confidence 446778999999999999999999999999999988652 22222334799999999999988654 3567776 47889
Q ss_pred CEEEEchHHHHHHHHhCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|+||||+|||+|++++||+|.+++
T Consensus 590 PvLGICLG~QlLa~a~GG~V~~~~ 613 (717)
T TIGR01815 590 PVFGVCLGLQGMVEAFGGALDVLP 613 (717)
T ss_pred CEEEECHHHHHHhhhhCCEEEECC
Confidence 999999999999999999999865
No 34
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.84 E-value=2.7e-20 Score=140.53 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=78.4
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-h
Q 033201 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-L 94 (125)
Q Consensus 23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~ 94 (125)
++|+|+||+|.... ...+.++|++.|.++++++++..........++|++||+|||.++++.. ...++|++ +
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~ 80 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRL 80 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHH
Confidence 46789999986544 4789999999999999988653221111224799999999999887643 24677887 4
Q ss_pred CCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 95 GPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+.++|+||||+|||+|++++||+|.+.+
T Consensus 81 ~~~~PvlGIC~G~Qlla~alGg~V~~~~ 108 (234)
T PRK07053 81 AAGLPTLGICLGAQLIARALGARVYPGG 108 (234)
T ss_pred HCCCCEEEECccHHHHHHHcCCcEecCC
Confidence 7789999999999999999999999854
No 35
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.84 E-value=3.3e-20 Score=153.42 Aligned_cols=98 Identities=27% Similarity=0.567 Sum_probs=80.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG 102 (125)
..+|+|||++++|++.+.++|++.|...++++++ .+.+++...++|||||+|||.++++.... .+.+. ++.++||||
T Consensus 3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p-~~~~~i~~~~~PvLG 80 (511)
T PRK00074 3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAP-RADPEIFELGVPVLG 80 (511)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCc-cccHHHHhCCCCEEE
Confidence 4579999999999999999999999999999876 45677765567999999999988764421 12233 357899999
Q ss_pred EchHHHHHHHHhCCeeeeCCC
Q 033201 103 VCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~ 123 (125)
||+|||+|+.++||+|.+.+.
T Consensus 81 IC~G~QlLa~~lGG~V~~~~~ 101 (511)
T PRK00074 81 ICYGMQLMAHQLGGKVERAGK 101 (511)
T ss_pred ECHHHHHHHHHhCCeEEecCC
Confidence 999999999999999988753
No 36
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.82 E-value=1.1e-19 Score=155.54 Aligned_cols=101 Identities=28% Similarity=0.575 Sum_probs=77.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhC-C--CeEEEEeCCCCCHHHHh-cCCCCEEEECCCCCCcCCchHHHHHHHH---h
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGISLQTVLE---L 94 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~-g--~~~~v~~~~~~~~~~~~-~~~~dgiIi~GG~~~~~~~~~~~~~I~~---~ 94 (125)
...+||++||++|+|++++.++|++. | +++++++++....+.+. ..++|+|||+|||++|.+... ..++++ .
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~-~~i~~~i~~~ 81 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQD-MGIISELWEL 81 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhh-hHHHHHHHHh
Confidence 45689999999999999999999986 3 67788887643322222 247999999999999975443 123333 1
Q ss_pred --CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 95 --GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 95 --~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
..++||||||+|||+|+.++||+|.+.+.
T Consensus 82 ~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~ 112 (742)
T TIGR01823 82 ANLDEVPVLGICLGFQSLCLAQGADISRLPT 112 (742)
T ss_pred cccCCCcEEEEchhhHHHHhhcCCEEEECCC
Confidence 23699999999999999999999998764
No 37
>PRK05665 amidotransferase; Provisional
Probab=99.81 E-value=2e-19 Score=136.32 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCeEEEEECC----------CCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHH---
Q 033201 23 NKNPIIVIDNY----------DSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS--- 87 (125)
Q Consensus 23 ~~~~I~vid~~----------~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~--- 87 (125)
+.|||+|+..+ ++|...+.++|.+.+. ++.++.......+. ...+|||+||+|||.++++..++
T Consensus 1 ~~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~ 79 (240)
T PRK05665 1 MSLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQT 79 (240)
T ss_pred CceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHH
Confidence 34678888543 2444457777777764 44555432211111 12479999999999999876543
Q ss_pred -HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 88 -LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 88 -~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
.++|+++ ++++|+||||+|||+||+|+||+|.+.+.
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~ 117 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ 117 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence 5677774 78899999999999999999999998764
No 38
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.79 E-value=6.5e-19 Score=133.13 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchH----HHHHHHHh-CCCCCEEEEchHH
Q 033201 34 DSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~----~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
+.|.+.+.+.++..+.++.+++.... ..+++ .+||||||+|||.++++..+ +.++|+++ +.++|+||||+||
T Consensus 21 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 21 GDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred CCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 45556677777778999988876532 22233 37999999999999877543 35777774 7789999999999
Q ss_pred HHHHHHhCCeeeeCC
Q 033201 108 QCIGEAFGGESSKMS 122 (125)
Q Consensus 108 QlLa~a~Gg~v~~~~ 122 (125)
|+|+.++||+|.+.+
T Consensus 99 Qlla~alGg~V~~~~ 113 (237)
T PRK09065 99 QLLAHALGGEVGYNP 113 (237)
T ss_pred HHHHHHcCCccccCC
Confidence 999999999999765
No 39
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.78 E-value=2.5e-18 Score=129.85 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=73.9
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 033201 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS---------GISLQTVL 92 (125)
Q Consensus 25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~---------~~~~~~I~ 92 (125)
|||+||.+..-. ...+..++++.|+++.++..... +.++ ..+||++||+|||+++.+. ....++|+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~ 78 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN 78 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence 689999775433 45688999999999988765421 1121 2479999999999886531 12357788
Q ss_pred Hh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 93 EL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
++ +.++|+||||+|+|+|+.++||+|.+.+.
T Consensus 79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~ 110 (235)
T PRK08250 79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE 110 (235)
T ss_pred HHHHcCCCEEEEChhHHHHHHHhCceeccCCC
Confidence 74 78999999999999999999999998764
No 40
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.76 E-value=4.5e-18 Score=128.99 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=67.7
Q ss_pred CeEEEEECCCCch---HHHHHHHHhCCCe---EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHH-------
Q 033201 25 NPIIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GIS------- 87 (125)
Q Consensus 25 ~~I~vid~~~~~~---~~i~~~l~~~g~~---~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~------- 87 (125)
+.|+|+++..... ..+.+++++.|.. +.+++.+.......+..+|||+||+||++++++. .++
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~ 81 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE 81 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence 3488998765432 5678888888765 5555544221111122479999999999999875 222
Q ss_pred -HHHHHH-hCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201 88 -LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSK 120 (125)
Q Consensus 88 -~~~I~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (125)
.++++. +.+++|+||||+|||+|+.++||+|.+
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~ 116 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR 116 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec
Confidence 233444 278899999999999999999999997
No 41
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.73 E-value=5e-17 Score=118.07 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=73.2
Q ss_pred eEEEEECCCCc-hHHHHHHHHhCC---CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc-CCch----HHHHHHHHh-C
Q 033201 26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSG----ISLQTVLEL-G 95 (125)
Q Consensus 26 ~I~vid~~~~~-~~~i~~~l~~~g---~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~-~~~~----~~~~~I~~~-~ 95 (125)
||+|+++.... ...+.++|++.| ++++++++..... .....++|||||+||+.++ .+.. ...++|+.+ +
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~ 79 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA 79 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH
Confidence 57888765433 467899999998 6888887753222 1122489999999999887 3332 246777774 7
Q ss_pred CCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 96 PTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
+++|++|||+|+|+|+.++||+|.+.+.
T Consensus 80 ~~~pilgiC~G~q~l~~~lGG~v~~~~~ 107 (188)
T cd01741 80 AGKPVLGICLGHQLLARALGGKVGRNPK 107 (188)
T ss_pred CCCCEEEECccHHHHHHHhCCEEecCCC
Confidence 8899999999999999999999998764
No 42
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.70 E-value=3.2e-17 Score=132.05 Aligned_cols=96 Identities=25% Similarity=0.423 Sum_probs=80.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH--HHHHHHHhCCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~--~~~~I~~~~~~~Pv 100 (125)
...+|+|+|++.+|.+.+.|.+|+.....+++|.+ .+...+....+.||||||||.++++.+. +...|.++ ++|+
T Consensus 15 ~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~vpv 91 (552)
T KOG1622|consen 15 YFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GVPV 91 (552)
T ss_pred cCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CCcc
Confidence 34589999999999999999999999999999876 4566666568999999999999885442 33445444 5999
Q ss_pred EEEchHHHHHHHHhCCeeeeC
Q 033201 101 FGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~ 121 (125)
||||||||+|+..+||.|.+.
T Consensus 92 LGICYGmQ~i~~~~Gg~V~~~ 112 (552)
T KOG1622|consen 92 LGICYGMQLINKLNGGTVVKG 112 (552)
T ss_pred eeehhHHHHHHHHhCCccccc
Confidence 999999999999999999863
No 43
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.69 E-value=7.4e-17 Score=118.40 Aligned_cols=90 Identities=20% Similarity=0.340 Sum_probs=71.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCC
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP 99 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~~-~~~~P 99 (125)
|+|||++.++...+.++|++.|+++++++.. +++. ++|+|||+|| +.+.+. ....++|+++ ++++|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 6899999999999999999999999998742 3443 7999999665 433221 1235777774 78999
Q ss_pred EEEEchHHHHHHHH------------hCCeeeeCCC
Q 033201 100 LFGVCMGLQCIGEA------------FGGESSKMSS 123 (125)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~~~ 123 (125)
+||||+|+|+|+.+ +||+|.+.+.
T Consensus 74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~ 109 (198)
T cd01748 74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPA 109 (198)
T ss_pred EEEECHHHHHhccccccCCCCCCCCCcceEEEECCC
Confidence 99999999999999 8899988653
No 44
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.69 E-value=1.8e-16 Score=116.87 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=71.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP 99 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~P 99 (125)
|||+|||+++++...+.++|++.|+++++++. .+++. ++|++||+|| +.+.+. ....++|+++ ++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999988753 23443 7999999775 222221 1245677774 78899
Q ss_pred EEEEchHHHHHHHH------------hCCeeeeC
Q 033201 100 LFGVCMGLQCIGEA------------FGGESSKM 121 (125)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~ 121 (125)
+||||+|+|+|+++ +||++.+.
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 99999999999996 68888765
No 45
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.69 E-value=1.4e-16 Score=116.61 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=65.4
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCC--------------c---hHHHHHHHHh
Q 033201 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQD--------------S---GISLQTVLEL 94 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~--------------~---~~~~~~I~~~ 94 (125)
+.+.+++.++|++.|+.+.+++.+. +.++++ ...+||||++||+....+ . ....++++++
T Consensus 18 ~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 96 (189)
T cd01745 18 DYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAA 96 (189)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHH
Confidence 3456789999999999999988653 333332 137999999999864211 0 1125677774
Q ss_pred -CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201 95 -GPTVPLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
+.++|+||||+|+|+|+.++||+|.+.
T Consensus 97 ~~~~~PilgiC~G~Q~l~~~~Gg~v~~~ 124 (189)
T cd01745 97 LERGKPILGICRGMQLLNVALGGTLYQD 124 (189)
T ss_pred HHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence 788999999999999999999999875
No 46
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.68 E-value=2.3e-16 Score=116.14 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=63.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV 98 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~~~~~ 98 (125)
|+|+|||++.++..++.++|++.|+++++++. .+++. ++|+||+ +|++++.+... +.+.++ +.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~--~~~~ 71 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK--ACTQ 71 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH--HcCC
Confidence 68999999999999999999999999988863 24554 6899999 55565543322 223333 3479
Q ss_pred CEEEEchHHHHHHHHhC
Q 033201 99 PLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (125)
|+||||+|||+|+++++
T Consensus 72 PilGIClG~Qll~~~~~ 88 (196)
T PRK13170 72 PVLGICLGMQLLGERSE 88 (196)
T ss_pred CEEEECHHHHHHhhhcc
Confidence 99999999999999983
No 47
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.66 E-value=4.7e-16 Score=114.38 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=70.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCC
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV 98 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~ 98 (125)
+|+|||++.++..++.++|++.|++++++.. .+++. ++|+||++|+ +++... ....+.|++ .+.++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~ 73 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ 73 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence 3899999999999999999999999988742 34553 7999999765 443211 113466666 47889
Q ss_pred CEEEEchHHHHHHHH-----------hCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEA-----------FGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a-----------~Gg~v~~~~ 122 (125)
|+||||+|+|+|+.+ +|++|.+.+
T Consensus 74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~ 108 (199)
T PRK13181 74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR 108 (199)
T ss_pred CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence 999999999999999 788998864
No 48
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.66 E-value=5e-16 Score=115.39 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=69.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHh-
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL- 94 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~- 94 (125)
+|||+|||++.++.+++.++|++.|+ ++.+++ +.+++. ++|+|||+|+.....+... ...+++..
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL 74 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence 47899999999999999999999999 444433 345664 8999999887432221111 12344544
Q ss_pred CCCCCEEEEchHHHHHHHH------------hCCeeeeC
Q 033201 95 GPTVPLFGVCMGLQCIGEA------------FGGESSKM 121 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a------------~Gg~v~~~ 121 (125)
+.++|+||||+|+|+|+++ ++|+|.+.
T Consensus 75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~ 113 (209)
T PRK13146 75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF 113 (209)
T ss_pred hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence 6889999999999999999 89999886
No 49
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.65 E-value=4.9e-16 Score=114.50 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=74.0
Q ss_pred CCCeEEEEE----------CCCCchHHHHHHHHhCCCeEEEEeCCCCC---HHHHhcCCCCEEEECCCCCCcCCchHH--
Q 033201 23 NKNPIIVID----------NYDSFTYNLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGIS-- 87 (125)
Q Consensus 23 ~~~~I~vid----------~~~~~~~~i~~~l~~~g~~~~v~~~~~~~---~~~~~~~~~dgiIi~GG~~~~~~~~~~-- 87 (125)
+.+|++++. .+++|...+...|.+.|..+++++..... .++++ +|||+||||+..+++++.+|
T Consensus 3 ~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~ 80 (245)
T KOG3179|consen 3 EQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIK 80 (245)
T ss_pred cceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHH
Confidence 346777773 24566667888888889888877643221 23443 69999999999988765543
Q ss_pred --HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 88 --LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 88 --~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
..+++++ .-++||+|||+|||++|++.||+|.+.+.
T Consensus 81 KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~K 119 (245)
T KOG3179|consen 81 KLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPK 119 (245)
T ss_pred HHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCC
Confidence 4556665 56799999999999999999999998875
No 50
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.65 E-value=5.4e-16 Score=114.44 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=70.4
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCCC
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTV 98 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~~-~~~~ 98 (125)
+|+|+|++.++..++.++|++.|+++++++. .+++. ++|+|||+||. .+.+.. ...++|+++ +.++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 73 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGVG-AFPDAMANLRERGLDEVIKEAVASGK 73 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCCC-chHHHHHHHHHcChHHHHHHHHHCCC
Confidence 5899999999999999999999999998763 24554 79999998763 222211 235677774 7889
Q ss_pred CEEEEchHHHHHHHH------------hCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEA------------FGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a------------~Gg~v~~~~ 122 (125)
|+||||+|+|+|+.+ +||+|.+.+
T Consensus 74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~ 109 (205)
T PRK13141 74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP 109 (205)
T ss_pred cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence 999999999999997 678888764
No 51
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.65 E-value=5.6e-16 Score=114.15 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=60.0
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEEEEchHHHHHH
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLFGVCMGLQCIG 111 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~PvLGIC~G~QlLa 111 (125)
...+.+++++.|.++++++.+. .+++. ++|+|||+||+.++.+. ....++|+++ +.++|+||||+|+|+|+
T Consensus 16 ~~~~~~~l~~~g~~~~~~~~~~--~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~ 91 (200)
T PRK13527 16 IDALKRALDELGIDGEVVEVRR--PGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLA 91 (200)
T ss_pred HHHHHHHHHhcCCCeEEEEeCC--hHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHH
Confidence 4568899999999888887642 34453 79999999998765422 1246777774 78899999999999999
Q ss_pred HHhCCe
Q 033201 112 EAFGGE 117 (125)
Q Consensus 112 ~a~Gg~ 117 (125)
.++||+
T Consensus 92 ~~~gg~ 97 (200)
T PRK13527 92 KEVGDD 97 (200)
T ss_pred hhhcCC
Confidence 999983
No 52
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.64 E-value=8.3e-16 Score=132.20 Aligned_cols=96 Identities=30% Similarity=0.525 Sum_probs=81.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~Pv 100 (125)
+...||+.+|+ +...+..|+|..+|+++.++|.+ .+. ...+||||+++.||++|.-.+...+-++++ +.++|+
T Consensus 170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~-~~i---~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv 243 (1435)
T KOG0370|consen 170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWD-YPI---AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV 243 (1435)
T ss_pred CcccEEEEccc--CchHHHHHHHHHhCceEEEecCC-ccc---cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence 34568999998 66889999999999999999875 222 223899999999999998888777888884 556999
Q ss_pred EEEchHHHHHHHHhCCeeeeCCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
+|||+|||+|+.|.|++..+++.
T Consensus 244 fGIClGHQllA~AaGakT~KmKy 266 (1435)
T KOG0370|consen 244 FGICLGHQLLALAAGAKTYKMKY 266 (1435)
T ss_pred EEEehhhHHHHHhhCCceEEeec
Confidence 99999999999999999998763
No 53
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.64 E-value=1.7e-15 Score=111.02 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=66.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV 98 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~ 98 (125)
+|+|.|+++.+.+... .+.|+..|.++..++. .+++. ++||||++||+.+..+.. .+.++++++ ++++
T Consensus 1 ~m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~ 73 (189)
T PRK13525 1 MMKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGL 73 (189)
T ss_pred CCEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCC
Confidence 3689999887666654 5788999999888764 23443 799999999987654321 235778885 7899
Q ss_pred CEEEEchHHHHHHHHhCC
Q 033201 99 PLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg 116 (125)
|+||||+|+|+|+.++||
T Consensus 74 PilGIC~G~QlL~~~~gg 91 (189)
T PRK13525 74 PVFGTCAGMILLAKEIEG 91 (189)
T ss_pred eEEEECHHHHHHHhhccc
Confidence 999999999999999999
No 54
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.62 E-value=3.7e-15 Score=109.94 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=62.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHH--hCCCC
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPTV 98 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~--~~~~~ 98 (125)
|+|||++.++.+++.+.|++.|+++.+++. .+++. ++|+||| +|++++.+... +.+.|++ ++.++
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~ 74 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKK 74 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCC
Confidence 899999999999999999999999887764 23554 6999999 55566544321 2344444 37789
Q ss_pred CEEEEchHHHHHHHH
Q 033201 99 PLFGVCMGLQCIGEA 113 (125)
Q Consensus 99 PvLGIC~G~QlLa~a 113 (125)
|+||||+|+|+|+.+
T Consensus 75 pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 75 PILGICLGMQLFLER 89 (201)
T ss_pred cEEEECHhHHHHhhc
Confidence 999999999999998
No 55
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.60 E-value=3.8e-15 Score=109.54 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=68.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-H-----HHHHHHH-hCCCCC
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-I-----SLQTVLE-LGPTVP 99 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~-----~~~~I~~-~~~~~P 99 (125)
|+|||++.++...+.++|++.|+++++++.+ ++++ ++|+||++|+ +++.+.. . ...++++ ++.++|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~p 73 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKP 73 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence 5789999999999999999999999998843 3443 7999999663 4332211 1 1233365 478899
Q ss_pred EEEEchHHHHHHHH------------hCCeeeeCC
Q 033201 100 LFGVCMGLQCIGEA------------FGGESSKMS 122 (125)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~~ 122 (125)
+||||+|+|+|+.+ +||+|.+.+
T Consensus 74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~ 108 (196)
T TIGR01855 74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE 108 (196)
T ss_pred EEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence 99999999999999 789998764
No 56
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.59 E-value=9.1e-15 Score=108.94 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=63.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT 97 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~~~~ 97 (125)
|+|.|||...+...++.++|+..|+++.+++.+ +++. ++|+||+ ||++++.... .+.+.|++ ++++
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~ 74 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG 74 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence 689999998888899999999999999988642 3453 6899987 5556643221 13345555 4778
Q ss_pred CCEEEEchHHHHHHHHh
Q 033201 98 VPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a~ 114 (125)
+|+||||+|||+|++..
T Consensus 75 ~pvlGIClG~Qll~~~~ 91 (210)
T CHL00188 75 NPFIGICLGLHLLFETS 91 (210)
T ss_pred CCEEEECHHHHHHhhcc
Confidence 99999999999999974
No 57
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.59 E-value=1.3e-15 Score=115.30 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHhCCCeEEEEeCCCCC--HH---HHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEchH
Q 033201 33 YDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 106 (125)
Q Consensus 33 ~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~---~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G 106 (125)
++++...+..+..+.+..+.+.+.+... .. +.. .++||||++||++.+.... ...+++. ++.++|+||||+|
T Consensus 16 y~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIClG 93 (235)
T cd01746 16 YLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGICLG 93 (235)
T ss_pred HHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEEhH
Confidence 3344445555566666777765543211 11 111 3799999999998765443 3466776 4789999999999
Q ss_pred HHHHHHHhCCeeeeCCC
Q 033201 107 LQCIGEAFGGESSKMSS 123 (125)
Q Consensus 107 ~QlLa~a~Gg~v~~~~~ 123 (125)
||+|+.++||++.+++.
T Consensus 94 ~Q~l~~~~g~~~~~~~~ 110 (235)
T cd01746 94 MQLAVIEFARNVLGLPD 110 (235)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999999999987653
No 58
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.1e-15 Score=121.12 Aligned_cols=101 Identities=29% Similarity=0.533 Sum_probs=72.8
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHH----Hhc-CCCCEEEECCCCCCcCCchHHHHHHH--
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEE----LKR-KNPRGVLISPGPGAPQDSGISLQTVL-- 92 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~~~~~----~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~-- 92 (125)
+..+.++++||++|+|+.++++.|... +...+++..++...++ +.. --+|+||+++||++|.-.... -++.
T Consensus 11 ~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~-gI~~rl 89 (767)
T KOG1224|consen 11 SLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADI-GICLRL 89 (767)
T ss_pred hhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHH-HHHHHH
Confidence 344579999999999999999999774 5544444333333232 221 249999999999999544432 2222
Q ss_pred -HhCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 93 -ELGPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 93 -~~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+..+++||||||+|+|.|+.+.|+.|...+
T Consensus 90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n 120 (767)
T KOG1224|consen 90 LLECRDIPILGICLGFQALGLVHGAHVVHAN 120 (767)
T ss_pred HHhcCCCceeeeehhhHhHhhhcccceecCC
Confidence 225689999999999999999999998544
No 59
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.57 E-value=1.5e-14 Score=110.41 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC---HHHHhcCCCCEEEECCCCCCcC--------Cc---h-----HHHHHHHH-hCCCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQ--------DS---G-----ISLQTVLE-LGPTV 98 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~---~~~~~~~~~dgiIi~GG~~~~~--------~~---~-----~~~~~I~~-~~~~~ 98 (125)
.+.+++.+.|..+.+++..... .+++. ..+||||++||+.++. +. . ...++|+. +++++
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 3667778888887777743111 22222 3699999999986542 10 1 13567777 47899
Q ss_pred CEEEEchHHHHHHHHhCCeeeeC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
||||||+|||+|+.++||+|.+.
T Consensus 109 PILGICrG~Qllnva~GGtl~~~ 131 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRK 131 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeec
Confidence 99999999999999999999974
No 60
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.57 E-value=4.2e-14 Score=106.24 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC--------CchHHHHHHHHh-
Q 033201 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~--------~~~~~~~~I~~~- 94 (125)
|||+|+++.+++ ...+.++|++.|+++++++..+. ++ .++|+|||+||+.... ......++++++
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~ 75 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA 75 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence 589999998776 46788999999999998876422 23 3799999999964211 112345777774
Q ss_pred CCCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201 95 GPTVPLFGVCMGLQCIGEA--FGGESSKMS 122 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~ 122 (125)
+.++|++|||.|+|+|+.+ ++|++.+..
T Consensus 76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~ 105 (227)
T TIGR01737 76 EKGVPVLGICNGFQILVEAGLLPGALLPND 105 (227)
T ss_pred HcCCEEEEECHHHHHHHHcCCCCCceeecC
Confidence 7899999999999999996 888887754
No 61
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.54 E-value=1.6e-14 Score=119.36 Aligned_cols=101 Identities=20% Similarity=0.389 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEEECC----CCchHHHHHHHHhCCC----eEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCc
Q 033201 19 KSKNNKNPIIVIDNY----DSFTYNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 19 ~~~~~~~~I~vid~~----~~~~~~i~~~l~~~g~----~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~ 84 (125)
+++....+|+++.-+ ++| .++.++|+..|+ .+.+.+.+ .+++. ..++|||+++||++++...
T Consensus 284 ~~~~~~v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~~ 359 (525)
T TIGR00337 284 INPKHEVTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGVE 359 (525)
T ss_pred hCCCCCcEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhhc
Confidence 444556899999544 344 478889988876 34444432 22221 1359999999999887654
Q ss_pred hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201 85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS 124 (125)
Q Consensus 85 ~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~ 124 (125)
.. .+.++.+ ++++|+||||+|||+|+.++|++|.+++.+
T Consensus 360 g~-i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A 399 (525)
T TIGR00337 360 GK-ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGA 399 (525)
T ss_pred Ch-HHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCC
Confidence 44 3566664 788999999999999999999999886543
No 62
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.54 E-value=3.6e-14 Score=104.56 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=64.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHH-hCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGP 96 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~-~~~ 96 (125)
+|+|+|||.+.+...++.+.|++.|+++.+... .+++. ..|+||+ +|.++..+..+ +.+.|++ +..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d----~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~ 73 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRD----PEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVES 73 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecC----HHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhc
Confidence 478999999999999999999999999987652 45564 7899998 55565443322 4566776 467
Q ss_pred CCCEEEEchHHHHHHHH
Q 033201 97 TVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a 113 (125)
++|+||||+|||+|.+.
T Consensus 74 ~kP~LGIClGMQlLfe~ 90 (204)
T COG0118 74 GKPFLGICLGMQLLFER 90 (204)
T ss_pred CCCEEEEeHhHHhhhhc
Confidence 79999999999999863
No 63
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.52 E-value=5.7e-14 Score=103.46 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=63.1
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCCC
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVP 99 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~~~~~P 99 (125)
+|+|||++.++..++.++|++.|+++.+++. .+++. ++|+||++|+ +++.+... +.+.|++ ..++|
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P 72 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK 72 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence 3899999999999999999999999988763 25564 6999988666 44332221 3456666 56899
Q ss_pred EEEEchHHHHHHHHh
Q 033201 100 LFGVCMGLQCIGEAF 114 (125)
Q Consensus 100 vLGIC~G~QlLa~a~ 114 (125)
+||||+|||+|++..
T Consensus 73 vlGIClGmQlL~~~~ 87 (192)
T PRK13142 73 MIGICLGMQLMYEHS 87 (192)
T ss_pred EEEECHHHHHHhhhc
Confidence 999999999999987
No 64
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.52 E-value=1e-13 Score=103.64 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcC----------CchH--------HHHHHHH-hCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ----------DSGI--------SLQTVLE-LGP 96 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~----------~~~~--------~~~~I~~-~~~ 96 (125)
..+.+++++.|..+.++++.. +.+++. ...+||||++||..+.. .... ...+++. .++
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~-~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~ 105 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA-DDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR 105 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHcCCEEEEEccCC-CHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 468899999999999999762 333332 13799999999974331 0110 1345555 478
Q ss_pred CCCEEEEchHHHHHHHHhCCeeeeC
Q 033201 97 TVPLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
++||||||+|||+|+.++||++..-
T Consensus 106 ~~PilGICrG~Q~lnv~~GGtl~q~ 130 (217)
T PF07722_consen 106 GKPILGICRGMQLLNVAFGGTLYQD 130 (217)
T ss_dssp T--EEEETHHHHHHHHHCCSSEESC
T ss_pred CCCEEEEcHHHHHHHHHhCCCceee
Confidence 9999999999999999999999763
No 65
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.52 E-value=3e-14 Score=117.86 Aligned_cols=105 Identities=18% Similarity=0.360 Sum_probs=71.0
Q ss_pred cccccCCCCCCeEEEEECC----CCchHHHHHHHHhC----CCeEEEEeCCCCCHHH--H--hcCCCCEEEECCCCCCcC
Q 033201 15 LDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGEL----GYHFEVYRNDELTVEE--L--KRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 15 ~~~~~~~~~~~~I~vid~~----~~~~~~i~~~l~~~----g~~~~v~~~~~~~~~~--~--~~~~~dgiIi~GG~~~~~ 82 (125)
.++-+++...-+|+++.-+ |+| .++.++|+.. +.++.+.+.+...+++ . ...++||||++||++...
T Consensus 279 ~~~~~~~~~~v~IalVGKY~~l~DaY-~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~ 357 (533)
T PRK05380 279 VERLKNPKGEVTIALVGKYVELPDAY-KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG 357 (533)
T ss_pred HHHHhCCCCceEEEEEeCccCCcHHH-HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc
Confidence 3444555666789999543 333 2566666554 5566776655322211 0 113799999999988755
Q ss_pred CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
..+ ...+++.+ ++++|+||||+|||+|+.++||+|...
T Consensus 358 ~~g-~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~ 396 (533)
T PRK05380 358 IEG-KILAIRYARENNIPFLGICLGMQLAVIEFARNVLGL 396 (533)
T ss_pred ccc-HHHHHHHHHHCCCcEEEEchHHHHHHHHhcccccCc
Confidence 444 34677764 789999999999999999999999543
No 66
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.51 E-value=7.3e-14 Score=102.07 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=61.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCCE
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPL 100 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~-~~~~Pv 100 (125)
||.|+...+.+. +..++|++.|+++++++. .++++ ++|++||+||+++..+ ...+.+.|+++ ++++|+
T Consensus 1 ~igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pi 73 (184)
T TIGR03800 1 KIGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPV 73 (184)
T ss_pred CEEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcE
Confidence 456665544544 466999999999988864 23443 7999999999765422 12355778774 788999
Q ss_pred EEEchHHHHHHHHh
Q 033201 101 FGVCMGLQCIGEAF 114 (125)
Q Consensus 101 LGIC~G~QlLa~a~ 114 (125)
+|||+|+|+|++++
T Consensus 74 lGIC~G~qlL~~~~ 87 (184)
T TIGR03800 74 FGTCAGLIMLAKEI 87 (184)
T ss_pred EEECHHHHHHHhhh
Confidence 99999999999998
No 67
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.48 E-value=1.2e-13 Score=100.52 Aligned_cols=81 Identities=21% Similarity=0.419 Sum_probs=60.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEE
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~PvL 101 (125)
|+++++ .+.+.+ ++|++.|+++..+++. .++. ++|+||++||+.+..+. ..+.++|+++ ++++|+|
T Consensus 3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl 73 (183)
T cd01749 3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF 73 (183)
T ss_pred EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence 455554 444334 8999999999888752 3443 79999999997654432 1245677774 7899999
Q ss_pred EEchHHHHHHHHhCC
Q 033201 102 GVCMGLQCIGEAFGG 116 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg 116 (125)
|||+|+|+|+.++|+
T Consensus 74 GiC~G~qlL~~~~~~ 88 (183)
T cd01749 74 GTCAGLILLAKEVED 88 (183)
T ss_pred EECHHHHHHHHHhcc
Confidence 999999999999998
No 68
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=103.11 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCeEEEEeCC--CCCHHHHhcCCCCEEEECCCCCCcC---------------C---chHHHHHHHH-hCCC
Q 033201 39 NLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPGAPQ---------------D---SGISLQTVLE-LGPT 97 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~--~~~~~~~~~~~~dgiIi~GG~~~~~---------------~---~~~~~~~I~~-~~~~ 97 (125)
.+.+.....|.-+.++|.- .....++. ...||+|++|| .++. + +.....+|++ ++++
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~ 107 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERG 107 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcC
Confidence 3555566678777788732 11223332 36999999999 4321 0 1113678887 5999
Q ss_pred CCEEEEchHHHHHHHHhCCeeee
Q 033201 98 VPLFGVCMGLQCIGEAFGGESSK 120 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg~v~~ 120 (125)
+||||||+|+|+|+.||||++.+
T Consensus 108 iPILgICRG~QllNVa~GGtL~q 130 (243)
T COG2071 108 IPILGICRGLQLLNVALGGTLYQ 130 (243)
T ss_pred CCEEEEccchHHHHHHhcCeeeh
Confidence 99999999999999999999985
No 69
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.48 E-value=3.2e-13 Score=100.61 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=63.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCCC
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP 99 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~~~~~P 99 (125)
|+|||.+.+...++.+.++..+.++..++ ..+++. ++|+||++|+ +++.+.. .+.+.|++ +.+++|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~----~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p 74 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS----DPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP 74 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEEC----CHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence 89999999999999999999998887664 245554 7899998776 4432221 13456665 578899
Q ss_pred EEEEchHHHHHHHHhC
Q 033201 100 LFGVCMGLQCIGEAFG 115 (125)
Q Consensus 100 vLGIC~G~QlLa~a~G 115 (125)
+||||+|||+|+.+++
T Consensus 75 ilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 75 LFGICIGFQILFESSE 90 (210)
T ss_pred EEEECHhHHHHHHhcc
Confidence 9999999999999875
No 70
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.47 E-value=3e-13 Score=102.29 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=68.4
Q ss_pred EEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC--------chH-HHHHHHHh-C
Q 033201 27 IIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGI-SLQTVLEL-G 95 (125)
Q Consensus 27 I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~--------~~~-~~~~I~~~-~ 95 (125)
|+|+.+.++. ...+.+.|++.|+++++++..+....+....+||+|||+||+..... ... ..++++++ +
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~ 80 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE 80 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence 4667666554 56789999999999999886532111111237999999999742111 111 45777775 7
Q ss_pred CCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201 96 PTVPLFGVCMGLQCIGEA--FGGESSKMS 122 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a--~Gg~v~~~~ 122 (125)
+++|+||||.|+|+|+++ ++|++.+.+
T Consensus 81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~ 109 (238)
T cd01740 81 RGGLVLGICNGFQILVELGLLPGALIRNK 109 (238)
T ss_pred CCCeEEEECcHHHHHHHcCCCccccccCC
Confidence 899999999999999998 888886654
No 71
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.45 E-value=1.1e-12 Score=98.15 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=72.2
Q ss_pred CeEEEEECCCCch-HHHHHHHH-hCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC--------CchHHHHHHHHh
Q 033201 25 NPIIVIDNYDSFT-YNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL 94 (125)
Q Consensus 25 ~~I~vid~~~~~~-~~i~~~l~-~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~--------~~~~~~~~I~~~ 94 (125)
|||+|+.+.+++. ..+.+.|+ ..|+++..++..+ .++ .++|+|||+||+.... ....+.++|+++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l--~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~ 75 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDL--DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF 75 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCC--CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence 5899999988874 56899998 8999988876542 233 3799999999964211 113356778774
Q ss_pred -CCCCCEEEEchHHHHHHHH--hCCeeeeCCC
Q 033201 95 -GPTVPLFGVCMGLQCIGEA--FGGESSKMSS 123 (125)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~ 123 (125)
++++|++|||.|+|+|+++ ++|++.+.+.
T Consensus 76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~ 107 (219)
T PRK03619 76 AEKGKPVLGICNGFQILTEAGLLPGALTRNAS 107 (219)
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCC
Confidence 7899999999999999998 9999887654
No 72
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.44 E-value=8.9e-13 Score=101.19 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch-----H----HHHH
Q 033201 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----I----SLQT 90 (125)
Q Consensus 23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~-----~----~~~~ 90 (125)
+++||+|+.+.+.. .....++|++.|+++++++..+.........+||+|||+||.. +..... . ..+.
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~ 81 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKD 81 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHH
Confidence 46799999886665 5678899999999999887642111111123799999999953 211111 1 2256
Q ss_pred HHHh-CCCCCEEEEchHHHHHHHH
Q 033201 91 VLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 91 I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
|+++ ++++|+||||.|+|+|+++
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHHC
Confidence 6774 7899999999999999984
No 73
>PRK06186 hypothetical protein; Validated
Probab=99.44 E-value=3.8e-13 Score=101.41 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=64.8
Q ss_pred CeEEEEEC----CCCchHHHHHHHHh----CCCeEEEEeCCCCCHHHH-hcCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 033201 25 NPIIVIDN----YDSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid~----~~~~~~~i~~~l~~----~g~~~~v~~~~~~~~~~~-~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~- 94 (125)
.+|+++.- .|+|. ++.+.|+. .+.++++.+.+...+++- ...++|||+++||.+.....++ ...++..
T Consensus 2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gk-i~ai~~Ar 79 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGA-LTAIRFAR 79 (229)
T ss_pred cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHH-HHHHHHHH
Confidence 46788843 34444 45566644 567777776553222210 1137999999999776555555 4677774
Q ss_pred CCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 95 GPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
++++|+||||+|||++...+..++...+
T Consensus 80 e~~iP~LGIClGmQ~avIe~arnv~g~~ 107 (229)
T PRK06186 80 ENGIPFLGTCGGFQHALLEYARNVLGWA 107 (229)
T ss_pred HcCCCeEeechhhHHHHHHHHhhhcCCc
Confidence 8899999999999998888887775443
No 74
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.44 E-value=1e-12 Score=109.52 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=65.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LG 95 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~ 95 (125)
..++|+|||++.++..++.++|++.|+++.+++. .+++. ++|+|||+|+ +++... ..+.+.|++ ++
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~ 77 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ 77 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence 4578999999999999999999999999987753 23453 7999999775 443221 114556776 47
Q ss_pred CCCCEEEEchHHHHHHHHh
Q 033201 96 PTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~ 114 (125)
.++|+||||+|||+|++++
T Consensus 78 ~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 78 NDRPFLGICLGLQLLFESS 96 (538)
T ss_pred cCCCEEEECHHHHHHhhhh
Confidence 8899999999999999984
No 75
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.39 E-value=2.1e-12 Score=94.17 Aligned_cols=91 Identities=12% Similarity=0.270 Sum_probs=66.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc--C--CchHHHHHHHHhCCCCCE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVPL 100 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~--~--~~~~~~~~I~~~~~~~Pv 100 (125)
+||.|+...+.+.+ -.+.|++.|+++.+++. .+++. ++|+|||+||.+.. . +...+.+.|+++..++|+
T Consensus 3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpi 75 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPV 75 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcE
Confidence 78999998877765 66888999998877652 34554 79999999996543 1 112256778875347899
Q ss_pred EEEchHHHHHHH---HhC---CeeeeCC
Q 033201 101 FGVCMGLQCIGE---AFG---GESSKMS 122 (125)
Q Consensus 101 LGIC~G~QlLa~---a~G---g~v~~~~ 122 (125)
+|||.|+|+|++ -+| ++|.++.
T Consensus 76 lGICaG~qlL~~~s~~Lg~idg~V~Rn~ 103 (179)
T PRK13526 76 FGTCAGSIILSKGEGYLNLLDLEVQRNA 103 (179)
T ss_pred EEEcHHHHHHHccCCCCCCccEEEEEcC
Confidence 999999999998 344 6666654
No 76
>PLN02327 CTP synthase
Probab=99.38 E-value=8.1e-13 Score=109.75 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=72.3
Q ss_pred cccccCCCCCCeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCHHH------------H--hcCCCCEE
Q 033201 15 LDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVEE------------L--KRKNPRGV 72 (125)
Q Consensus 15 ~~~~~~~~~~~~I~vid~~----~~~~~~i~~~l~~----~g~~~~v~~~~~~~~~~------------~--~~~~~dgi 72 (125)
.++-+++...-+|+++.-+ |+|. ++.++|+. .+.++++.+.+...+++ + ...++|||
T Consensus 288 ~~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGI 366 (557)
T PLN02327 288 AESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGI 366 (557)
T ss_pred HHHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEE
Confidence 3334455566789999433 4443 45556644 56777776654221111 0 01379999
Q ss_pred EECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201 73 LISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS 124 (125)
Q Consensus 73 Ii~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~ 124 (125)
+++||++++...+. ...++.. ++++|+||||+|||+++.+|+.+|...+.+
T Consensus 367 vvpGGfG~~~~~G~-i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dA 418 (557)
T PLN02327 367 LVPGGFGDRGVEGK-ILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDA 418 (557)
T ss_pred EeCCCCCCcccccH-HHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCC
Confidence 99999987655554 3556654 789999999999999999999998776543
No 77
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.36 E-value=5.5e-12 Score=97.32 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCc--h-HHHHHHHHh----CC--CCCEEEEchH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS--G-ISLQTVLEL----GP--TVPLFGVCMG 106 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~--~-~~~~~I~~~----~~--~~PvLGIC~G 106 (125)
.+..+++++.|..+..++.+. ..++++. ..+||||++||+.+.... . ....+++.+ ++ .+|+||||+|
T Consensus 23 ~~Yv~~l~~aG~~vvpi~~~~-~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 23 ASYVKFLESAGARVVPIWINE-SEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHHCCCeEEEEEeCC-cHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 457889999999988777652 2233321 479999999998766421 1 123333432 22 3899999999
Q ss_pred HHHHHHHhCCeee
Q 033201 107 LQCIGEAFGGESS 119 (125)
Q Consensus 107 ~QlLa~a~Gg~v~ 119 (125)
+|+|+.++||++.
T Consensus 102 ~QlL~~~~gg~~~ 114 (273)
T cd01747 102 FELLTYLTSGETL 114 (273)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999999754
No 78
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.35 E-value=3.5e-12 Score=97.21 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=63.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTV 98 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~-~~~~ 98 (125)
+|+|.|+.+.+++.+ ..+.|++.|+++.+++. .+++. ++|+|||+||...... ...+.+.|+++ ++++
T Consensus 1 ~m~igVLa~qG~~~e-~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~ 73 (248)
T PLN02832 1 MMAIGVLALQGSFNE-HIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGK 73 (248)
T ss_pred CcEEEEEeCCCchHH-HHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCC
Confidence 368999999877664 56899999999887764 35564 7999999997543211 11245667764 6789
Q ss_pred CEEEEchHHHHHHHHh
Q 033201 99 PLFGVCMGLQCIGEAF 114 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~ 114 (125)
|+||||.|||+|++..
T Consensus 74 PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 74 PVWGTCAGLIFLAERA 89 (248)
T ss_pred CEEEEChhHHHHHHHh
Confidence 9999999999999986
No 79
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.34 E-value=7.1e-12 Score=93.84 Aligned_cols=86 Identities=21% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch------HHHHHHHH-
Q 033201 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG------ISLQTVLE- 93 (125)
Q Consensus 24 ~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~------~~~~~I~~- 93 (125)
+|||+|+.+.++.. ......++..|.+++.++..+.... .++|++|++||.+ +....+ +..+.+++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~ 77 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF 77 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence 58999999887764 5688899999999999887533221 1699999999953 222222 23556666
Q ss_pred hCCCCCEEEEchHHHHHHHH
Q 033201 94 LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 94 ~~~~~PvLGIC~G~QlLa~a 113 (125)
++.++|+||||-|+|+|.++
T Consensus 78 a~~g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 78 AEKGKPVLGICNGFQILSEA 97 (231)
T ss_pred HHCCCeEEEEcchhHHHHHc
Confidence 47899999999999999953
No 80
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.33 E-value=1.6e-11 Score=96.03 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCc--h-HHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHhcCCCCEEEECCCCCC--c
Q 033201 24 KNPIIVIDNYDSF--T-YNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--P 81 (125)
Q Consensus 24 ~~~I~vid~~~~~--~-~~i~~~l~~~g~~--~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~--~ 81 (125)
..||+|++.-..- + ..+.|.|.....+ ++.+.... .+++++....|||+||+|+|.+ +
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~ 114 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLP 114 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCcc
Confidence 5799999864321 2 3466777554444 44433321 2345555568999999999987 5
Q ss_pred CCchH----HHHHHHHh-CCCCCEEEEchHHHHHHHHhCCe
Q 033201 82 QDSGI----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGE 117 (125)
Q Consensus 82 ~~~~~----~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~ 117 (125)
++... +.++++-+ +..+|+||||+|+|+++.++||.
T Consensus 115 fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi 155 (302)
T PRK05368 115 FEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGI 155 (302)
T ss_pred CCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCC
Confidence 55433 22333333 46799999999999999999995
No 81
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.23 E-value=4.5e-11 Score=87.82 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=61.2
Q ss_pred EEEEECC-CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CCCCC
Q 033201 27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GPTVP 99 (125)
Q Consensus 27 I~vid~~-~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-----~~~~~~I~~~-~~~~P 99 (125)
|++++.. .+...++.+.+++.|++++++++.. ++ .++|+|||+||.....+. ..+.+.|+++ ++++|
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 4566664 3566789999999999999998642 22 378999999986322111 1245667764 78999
Q ss_pred EEEEchHHHHHHHHhC
Q 033201 100 LFGVCMGLQCIGEAFG 115 (125)
Q Consensus 100 vLGIC~G~QlLa~a~G 115 (125)
+||||.|+|+|++.+.
T Consensus 75 vlgiC~G~qlL~~~~~ 90 (194)
T cd01750 75 VLGICGGYQMLGKYIV 90 (194)
T ss_pred EEEECHHHHHhhhhcc
Confidence 9999999999999984
No 82
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.19 E-value=6e-11 Score=97.03 Aligned_cols=97 Identities=19% Similarity=0.338 Sum_probs=66.5
Q ss_pred CeEEEEE----CCCCchHHHHHHHHhC----CCeEEEEeCCCCCHH-----HHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 25 NPIIVID----NYDSFTYNLCQYMGEL----GYHFEVYRNDELTVE-----ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 25 ~~I~vid----~~~~~~~~i~~~l~~~----g~~~~v~~~~~~~~~-----~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
-+|+++. ..|+|. ++.++|+.. +.++.+.+.+...++ .+.. .+|||+++||.+.....+++ ..+
T Consensus 289 v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI-~Ai 365 (533)
T COG0504 289 VTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKI-AAI 365 (533)
T ss_pred eEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHH-HHH
Confidence 5688884 444554 466677654 466666665532222 2221 28999999998865555554 666
Q ss_pred HHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201 92 LEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS 124 (125)
Q Consensus 92 ~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~ 124 (125)
+.. ++++|+||||+|||+....+--+|..++.+
T Consensus 366 ~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~A 399 (533)
T COG0504 366 RYARENNIPFLGICLGMQLAVIEFARNVLGLEGA 399 (533)
T ss_pred HHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccC
Confidence 664 889999999999999999888777665544
No 83
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.04 E-value=3.1e-09 Score=79.67 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=63.4
Q ss_pred CeEEEEEC----CCCch----HHHHHHHHhCCCeEEEEeCCC--------------------------------CCHHHH
Q 033201 25 NPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDE--------------------------------LTVEEL 64 (125)
Q Consensus 25 ~~I~vid~----~~~~~----~~i~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~ 64 (125)
+||+|+-. .+++. -...+.|++.|+++++..+.. ..++++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 47777742 23332 235688999999998875421 112333
Q ss_pred hcCCCCEEEECCCCCCcC---C----------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201 65 KRKNPRGVLISPGPGAPQ---D----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 65 ~~~~~dgiIi~GG~~~~~---~----------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
...+||+|+|+||.+... + .....++++++ +++|||.+||.|.++|+.++|
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 345799999999965321 1 34467888886 889999999999999999873
No 84
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.97 E-value=1.7e-09 Score=79.65 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEchHHHHHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIG 111 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa 111 (125)
..-.+.|++.|+++.++++. ..+++. ++|+|||+||..... ....+.+.|+++ ++++|++|||.|+|+|+
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~ 89 (198)
T cd03130 14 PENLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLG 89 (198)
T ss_pred HHHHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHH
Confidence 34567888999999887642 112333 499999999843211 111245677774 78899999999999999
Q ss_pred HHh
Q 033201 112 EAF 114 (125)
Q Consensus 112 ~a~ 114 (125)
+.+
T Consensus 90 ~~~ 92 (198)
T cd03130 90 ESL 92 (198)
T ss_pred HHh
Confidence 987
No 85
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.93 E-value=1.9e-09 Score=82.78 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCC--cCCchH-----------HHH
Q 033201 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQDSGI-----------SLQ 89 (125)
Q Consensus 24 ~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~--~~~~~~-----------~~~ 89 (125)
+.||+|+.+.++. ......+|+..|++++.+..++....+....+||+|+|+||.+- ....+. +.+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~ 80 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD 80 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence 3689999887766 56799999999999998876421111112248999999999542 111121 245
Q ss_pred HHHHh-CC-CCCEEEEchHHHHHHHH
Q 033201 90 TVLEL-GP-TVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 90 ~I~~~-~~-~~PvLGIC~G~QlLa~a 113 (125)
.|+++ ++ ++|+||||-|+|+|.+.
T Consensus 81 ~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 81 AIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 56664 55 99999999999999876
No 86
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.85 E-value=3.6e-08 Score=73.79 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhcCCCCEEEECCCCCCc---CC-
Q 033201 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD- 83 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dgiIi~GG~~~~---~~- 83 (125)
..+.|++.|+++++..+.. .+++++...+||+|+|+||.+.. .+
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 5678899999998876521 12334333479999999995431 11
Q ss_pred ---------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201 84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 84 ---------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
...+.++++++ +++|||.+||.|.++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 34567888885 889999999999999999884
No 87
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.82 E-value=1.7e-08 Score=83.30 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=51.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCC-cCCc-hHHHHHHHHhCCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~-~~~~-~~~~~~I~~~~~~~PvL 101 (125)
|+|.|+... +..+.++..|. ++++++.+ +.+++. ++|+|||+||... ..+. ..+.+.|+++ ++|||
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence 468888653 34455766665 56665543 345664 7999999998422 1111 1234445444 79999
Q ss_pred EEchHHHHHHHHh
Q 033201 102 GVCMGLQCIGEAF 114 (125)
Q Consensus 102 GIC~G~QlLa~a~ 114 (125)
|||.|+|||++..
T Consensus 70 GICgG~QmLg~~~ 82 (476)
T PRK06278 70 GICSGFQILSEKI 82 (476)
T ss_pred EEcHHHHhccccc
Confidence 9999999999886
No 88
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.78 E-value=6.6e-09 Score=75.59 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=42.6
Q ss_pred HHhcCCCCEEEECCCCCCcCCchH------HHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee-eeCC
Q 033201 63 ELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES-SKMS 122 (125)
Q Consensus 63 ~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v-~~~~ 122 (125)
++....|||+||+|.|-...+.++ +.+++.-. ++.+|+||||+|+|....++||.. ..++
T Consensus 57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~ 124 (175)
T cd03131 57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLP 124 (175)
T ss_pred HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCC
Confidence 344568999999999885443322 22222222 567999999999999999999986 4443
No 89
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.77 E-value=7.2e-08 Score=61.17 Aligned_cols=73 Identities=26% Similarity=0.481 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHH-HHhcCCCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEchHHHHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCI 110 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dgiIi~GG~~~~~~~---~~~~~~I~~~-~~~~PvLGIC~G~QlL 110 (125)
..+.+.+++.++++++++....... .....++|++|++||....... ....+++++. .+++|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 4678899999999999986532211 0112479999999997765433 4566777774 7789999999999998
No 90
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.75 E-value=5.5e-08 Score=70.12 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=37.1
Q ss_pred CCCEEEECCCCCCcC--CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 68 NPRGVLISPGPGAPQ--DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~--~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
+||+++|+||++... ......++|+++ ++++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999974321 234567889884 8899999999999999987
No 91
>PRK00784 cobyric acid synthase; Provisional
Probab=98.73 E-value=3.3e-08 Score=81.77 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCch-HHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-----HHHHHHHHh-C
Q 033201 24 KNPIIVIDNYDSFT-YNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-G 95 (125)
Q Consensus 24 ~~~I~vid~~~~~~-~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~ 95 (125)
..||+|+.....+. .++ +.|++ .|++++.+++. ++++ ++|+|+|+||........ .+.+.|+++ +
T Consensus 251 ~~~i~v~~~~~a~~f~nl-~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~ 323 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDF-DPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHAR 323 (488)
T ss_pred ceEEEEEeCCCcCCccCh-HHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHH
Confidence 35899997433332 334 45655 89999888653 2454 789999999964332211 135667774 7
Q ss_pred CCCCEEEEchHHHHHHHHh
Q 033201 96 PTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~ 114 (125)
+++|++|||.|+|+|++.+
T Consensus 324 ~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 324 RGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred cCCeEEEECHHHHHHhhhc
Confidence 8999999999999999988
No 92
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.71 E-value=5.3e-08 Score=79.28 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
..|||+++||.++..-.+.+ ..++.. ++++|.||||+|||+.+..|--+|..++.
T Consensus 363 ~adGilvPGGFG~RGveG~i-~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~d 418 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKI-LAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKD 418 (585)
T ss_pred cCCeEEeCCcccccchhHHH-HHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCC
Confidence 58999999998876555543 344443 78899999999999999988776665544
No 93
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.71 E-value=6.9e-08 Score=68.36 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 033201 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvL 101 (125)
.+.+.|++.|+++.++.... .+++++...+||+|+++||+... .......++|+++ ++++|+.
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence 35678888899988775431 11222222359999999996521 1234577889885 7889999
Q ss_pred EEchHHHHHHHH
Q 033201 102 GVCMGLQCIGEA 113 (125)
Q Consensus 102 GIC~G~QlLa~a 113 (125)
+||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999986
No 94
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.69 E-value=1.6e-07 Score=84.52 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC-------HHHH--hcCCCCEEEECCCCCCcCCc---h----
Q 033201 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT-------VEEL--KRKNPRGVLISPGPGAPQDS---G---- 85 (125)
Q Consensus 23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~-------~~~~--~~~~~dgiIi~GG~~~~~~~---~---- 85 (125)
..+||+|+.+.++. .....+++++.|++++.+...+.. .+.+ .-.++++|+++||.+ ..|. .
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS-yGD~l~~~~~~~ 1054 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS-AGDEPDGSAKFI 1054 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-cccccchhHHHH
Confidence 46899999988776 456889999999998877654321 1112 114799999999954 2222 1
Q ss_pred -------HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 86 -------ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 86 -------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.+.++++ +++.++||||.|+|+|++.
T Consensus 1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 124455553 7899999999999999886
No 95
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.68 E-value=1.5e-07 Score=85.20 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=64.1
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCchH-----------H
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~~-----------~ 87 (125)
...+||+|+-+.+.. ......+|+..|++++.+...+.........++++++++||.+ +..+.+. +
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~ 1114 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPL 1114 (1307)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHH
Confidence 356899999887765 4668899999999987776543211111114799999999963 3333221 2
Q ss_pred HHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201 88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.+++ + ..+.++||||.|+|+|.+.
T Consensus 1115 ~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1115 LQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 444555 3 4689999999999999985
No 96
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.66 E-value=1.1e-07 Score=65.89 Aligned_cols=90 Identities=18% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc---CC
Q 033201 24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QD 83 (125)
Q Consensus 24 ~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~---~~ 83 (125)
++||+|+-+.+-. ...+.+.|+..|+++.++..+.. ++++....+||++||+||.... ..
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 3577777543222 23467888889999988865421 1122222258999999996543 23
Q ss_pred chHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 84 ~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.+.++|+++ .+++|+.+||.|..+|+.+
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 45578899884 7899999999999999985
No 97
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.63 E-value=4.9e-07 Score=65.90 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=59.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHhcCCCCEEEECCCCCCc
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiIi~GG~~~~ 81 (125)
++|||+|+-.. ++. -...+.|++.|+++.+..... ..++++...++|.|+|+||+..+
T Consensus 1 ~~~~~~il~~~-g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~ 79 (196)
T PRK11574 1 MSASALVCLAP-GSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA 79 (196)
T ss_pred CCceEEEEeCC-CcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh
Confidence 46788888432 332 246678888888887754320 12223322369999999986433
Q ss_pred C---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 ~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
. +.+.+.++|+++ +++++|.+||.|..+|...
T Consensus 80 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 80 ECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred hhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 2 334578899885 7899999999999976543
No 98
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.62 E-value=2.5e-07 Score=84.01 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCchH-----------H
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~~-----------~ 87 (125)
...+||+|+.+.+.. ......+|+..|+++..+...+.........+|++++++||.. +....+. +
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~ 1132 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRL 1132 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHH
Confidence 356899999887765 4568889999999988777543222222223799999999954 2221122 2
Q ss_pred HHHHHH-h-CCCCCEEEEchHHHHHHHHhC
Q 033201 88 LQTVLE-L-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
.+.+++ + ..+.++||||.|+|+|+...|
T Consensus 1133 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g 1162 (1310)
T TIGR01735 1133 RDQFQAFFKRPDTFSLGVCNGCQMLSNLLE 1162 (1310)
T ss_pred HHHHHHHHhCCCceEEEecHHHHHHHHHhC
Confidence 344555 4 688999999999999994443
No 99
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.62 E-value=2.4e-07 Score=69.99 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHHHHHhCCCeEEEEeCCC------------------------------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201 40 LCQYMGELGYHFEVYRNDE------------------------------------LTVEELKRKNPRGVLISPGPGAPQ- 82 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~------------------------------------~~~~~~~~~~~dgiIi~GG~~~~~- 82 (125)
..+.|++.|+++++..+.. ..+++++..+||+|+|+||.+...
T Consensus 30 p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~d 109 (231)
T cd03147 30 PFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFD 109 (231)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchhhh
Confidence 5578899999999875421 112233335799999999965332
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
+...+.++++++ +++|||..||+|.++|+.+
T Consensus 110 l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 110 FPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 344577889885 8899999999999999987
No 100
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.61 E-value=2.1e-07 Score=76.25 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=58.5
Q ss_pred CeEEEEECCC-Cch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CC
Q 033201 25 NPIIVIDNYD-SFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GP 96 (125)
Q Consensus 25 ~~I~vid~~~-~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~-~~ 96 (125)
.+|+|+-... .|. ..=.+.|++.|+++..+++.. .++++ ++|+|||+||..... ....+.+.|+++ ++
T Consensus 246 ~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~--~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~ 321 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLA--DEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA 321 (451)
T ss_pred ceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcC--CCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence 5898884321 222 223467788999988776421 12343 789999999953221 112246778875 78
Q ss_pred CCCEEEEchHHHHHHHHh
Q 033201 97 TVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (125)
++||+|||-|+|+|++.+
T Consensus 322 g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 322 GKPIYAECGGLMYLGESL 339 (451)
T ss_pred CCCEEEEcHHHHHHHhhh
Confidence 899999999999999998
No 101
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.61 E-value=2.2e-07 Score=56.50 Aligned_cols=73 Identities=26% Similarity=0.477 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHH-HHhcCCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEchHHHHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dgiIi~GG~~~~~~~---~~~~~~I~~-~~~~~PvLGIC~G~QlL 110 (125)
..+.+.+++.++.+.+++....... .....++|++|++||+..+... ....+++.+ ..+++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4678889999999999886532211 1123479999999998765443 445666666 46789999999999874
No 102
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.58 E-value=4.7e-07 Score=82.22 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=63.7
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc---hH-----------H
Q 033201 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------S 87 (125)
Q Consensus 23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~---~~-----------~ 87 (125)
.++||+|+.+.+.. ......+|+..|++++.+...+.........++++++++||.. ..|. +. +
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS-~gD~lgsg~~~a~~~~~n~~~ 1112 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFS-YGDVLGAGEGWAKSILFNPRL 1112 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccC-CcccchHHHHHHHHhhccHHH
Confidence 45799999887766 4668899999999988776543221111113799999999954 2221 11 2
Q ss_pred HHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201 88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.+++ + ..+.++||||.|+|+|.+.
T Consensus 1113 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1113 RDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 445555 4 6789999999999999996
No 103
>PRK04155 chaperone protein HchA; Provisional
Probab=98.58 E-value=7.6e-07 Score=69.36 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=54.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-------------------------------HHHHh------cCCCCEEEECCCCCCcC
Q 033201 40 LCQYMGELGYHFEVYRNDELT-------------------------------VEELK------RKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~-------------------------------~~~~~------~~~~dgiIi~GG~~~~~ 82 (125)
..+.|++.|+++++..+.... ++++. ..+||+|+|+||.+...
T Consensus 82 P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 82 PMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI 161 (287)
T ss_pred HHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH
Confidence 457889999999988653111 22221 35899999999966433
Q ss_pred ---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 83 ---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
+...+.++++++ ++++||..||+|.++|..+
T Consensus 162 dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 162 GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 334467888885 8899999999999987764
No 104
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.57 E-value=3.7e-07 Score=66.03 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCeEEEEECCC---CchHHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201 24 KNPIIVIDNYD---SFTYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ- 82 (125)
Q Consensus 24 ~~~I~vid~~~---~~~~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiIi~GG~~~~~- 82 (125)
.++++++-..+ .......+.|++.|+++++..... ...++.+..+||+++++||...+.
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 45677664322 112346688999999877664331 011112224899999999944432
Q ss_pred C--chHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201 83 D--SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 83 ~--~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~ 114 (125)
. .....++++++ +.++||..||.|.++|+.+-
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 2 24578899986 78999999999999999865
No 105
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.56 E-value=4.1e-07 Score=64.31 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCeEEEEeCC-CC---------------CHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCC
Q 033201 39 NLCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~-~~---------------~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~P 99 (125)
.+.+.|++.|++++++..+ .. .+++....+||+++|+||+... .....+.++|+++ .+++|
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP 96 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence 3567788899999887654 21 1122222368999999997421 1334577889885 88999
Q ss_pred EEEEchHHHHHHHH
Q 033201 100 LFGVCMGLQCIGEA 113 (125)
Q Consensus 100 vLGIC~G~QlLa~a 113 (125)
+.+||.|.++|+++
T Consensus 97 i~~ic~G~~~La~a 110 (165)
T cd03134 97 VAAICHGPWVLISA 110 (165)
T ss_pred EEEEchHHHHHHhc
Confidence 99999999999875
No 106
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.49 E-value=3.7e-07 Score=67.90 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=61.0
Q ss_pred CCCCeEEEEECCC----CchHHHHHHHHhC-CCeEEEEeCCC-CC-HHHHhcCCCCEEEECCCCCCcCCch------HHH
Q 033201 22 NNKNPIIVIDNYD----SFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDSG------ISL 88 (125)
Q Consensus 22 ~~~~~I~vid~~~----~~~~~i~~~l~~~-g~~~~v~~~~~-~~-~~~~~~~~~dgiIi~GG~~~~~~~~------~~~ 88 (125)
+...+|++|.... .+..++.+++++. |++++.+.... .. .+.+. ++|+|+++|| +....- .+.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~ 104 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLD 104 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHH
Confidence 4668999995432 3455678888999 99988776321 11 23343 7999999997 332211 135
Q ss_pred HHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201 89 QTVLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 89 ~~I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
+.|++ +++++|++|+|.|+|++...
T Consensus 105 ~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 105 AILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 66776 47889999999999999985
No 107
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.45 E-value=1.4e-06 Score=61.10 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=54.4
Q ss_pred HHHHHHHhCCCeEEEEeCCC---------------CCHHHHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCC
Q 033201 39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~~P 99 (125)
.+.+.|+..|++++++.++. .++++....+||.+||+||+... .+.+.+.++|+++ +++++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 46788888898888775431 11222222479999999997322 2345578899885 78899
Q ss_pred EEEEchHHHHHHHH
Q 033201 100 LFGVCMGLQCIGEA 113 (125)
Q Consensus 100 vLGIC~G~QlLa~a 113 (125)
+.+||.|..+|+.+
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999997
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.44 E-value=8.7e-07 Score=72.69 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=57.3
Q ss_pred CeEEEEECC-CCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CC
Q 033201 25 NPIIVIDNY-DSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GP 96 (125)
Q Consensus 25 ~~I~vid~~-~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-----~~~~~~I~~~-~~ 96 (125)
.||+|+-.. -+| ...=.+.|++.|+++..+++-. -++++ ++|+|+|+||....... ..+.+.|+++ ++
T Consensus 245 ~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~--d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~ 320 (449)
T TIGR00379 245 VRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLE--DTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQ 320 (449)
T ss_pred cEEEEEechhhceeHHHHHHHHHHCCCEEEEECCcc--CCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 588888321 122 1233456888899988776521 12343 78999999996322211 1245677774 78
Q ss_pred CCCEEEEchHHHHHHHHh
Q 033201 97 TVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (125)
++||+|+|-|+|+|++.+
T Consensus 321 G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 321 GLPIYGECGGLMYLSQSL 338 (449)
T ss_pred CCCEEEEcHHHHHHHhhh
Confidence 899999999999999988
No 109
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.42 E-value=1.6e-06 Score=61.94 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=52.0
Q ss_pred HHHHHHHhC-CCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCC-cCCchHHHHHHHHh-CCCCCEE
Q 033201 39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 39 ~i~~~l~~~-g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~-~~~~~~~~~~I~~~-~~~~PvL 101 (125)
.....|++. ++++.++..+. .+.++....++|.++|+||+.. ....+.+.++|+++ ++++++.
T Consensus 16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~ 95 (170)
T cd03140 16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA 95 (170)
T ss_pred HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence 355666664 67777765431 1233332236999999999642 22344578899985 7889999
Q ss_pred EEchHHHHHHHH
Q 033201 102 GVCMGLQCIGEA 113 (125)
Q Consensus 102 GIC~G~QlLa~a 113 (125)
+||.|.++|+++
T Consensus 96 aic~G~~~La~a 107 (170)
T cd03140 96 AICGATLALARA 107 (170)
T ss_pred EEChHHHHHHHC
Confidence 999999999996
No 110
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.40 E-value=1.6e-06 Score=69.14 Aligned_cols=80 Identities=14% Similarity=0.279 Sum_probs=59.5
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCC
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV 98 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~ 98 (125)
-|.++|.+.+...++.+.|+.+|+++..+.. ..++. +.|.+|++| .++.... .-+.+-|++ ++.++
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfPG-VGnfg~~~D~L~~~Gf~eplr~Yiesgk 75 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIFPG-VGNFGPAMDVLNRTGFAEPLRKYIESGK 75 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEeecC-cccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence 4678899999999999999999999976652 34564 678898854 4543211 113466777 48899
Q ss_pred CEEEEchHHHHHHH
Q 033201 99 PLFGVCMGLQCIGE 112 (125)
Q Consensus 99 PvLGIC~G~QlLa~ 112 (125)
|++|||.|.|.|..
T Consensus 76 PfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 76 PFMGICVGLQALFD 89 (541)
T ss_pred CeEeehhhHHHHhc
Confidence 99999999999853
No 111
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.37 E-value=2.7e-06 Score=64.32 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=54.4
Q ss_pred HHHHHHHhCCCeEEEEeCCC-------------------------------CCHHHH------hcCCCCEEEECCCCCCc
Q 033201 39 NLCQYMGELGYHFEVYRNDE-------------------------------LTVEEL------KRKNPRGVLISPGPGAP 81 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~-------------------------------~~~~~~------~~~~~dgiIi~GG~~~~ 81 (125)
...+.|++.|+++++..+.. ..++++ +..+||+|+++||.+..
T Consensus 30 ~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~g~~ 109 (232)
T cd03148 30 LPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGGHGAL 109 (232)
T ss_pred HHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCCCCCh
Confidence 35688899999998865421 122333 12479999999996544
Q ss_pred C---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 ~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
. +...+.++++++ +++|||..||+|.++|..+
T Consensus 110 ~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 110 IGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 3 334567888886 8899999999999988765
No 112
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.33 E-value=1.8e-06 Score=63.18 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=57.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHH-hCCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV 98 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~-~~~~~ 98 (125)
|+|.|+-..+.+.+ =.+.+++.+ .++..++ ..+++. ..||+||+||-++.- ....+.+-|++ ..+++
T Consensus 1 m~IGVLalQG~v~E-H~~~l~~~~~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~ 73 (194)
T COG0311 1 MKIGVLALQGAVEE-HLEALEKAGGAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL 73 (194)
T ss_pred CeEEEEEecccHHH-HHHHHHhhcCCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence 57888876655543 345777774 6665554 246665 799999999954321 11113466666 47899
Q ss_pred CEEEEchHHHHHHHHhC
Q 033201 99 PLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (125)
|++|.|-|+-+|+...-
T Consensus 74 Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 74 PVFGTCAGLILLAKEIL 90 (194)
T ss_pred ceEEechhhhhhhhhhc
Confidence 99999999999996443
No 113
>PHA03366 FGAM-synthase; Provisional
Probab=98.33 E-value=4.7e-06 Score=75.88 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc--CCch-----------H
Q 033201 21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--QDSG-----------I 86 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~--~~~~-----------~ 86 (125)
+..++||+|+-+.+.. .....++|.+.|+++..+...+...... -.+|+||+++||.+.- .+.. .
T Consensus 1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~ 1103 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103 (1304)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchH
Confidence 3456899999887765 4568899999999988877543322222 2479999999996522 1211 1
Q ss_pred HHHHHHHh--CCCCCEEEEch-HHHHHHHH
Q 033201 87 SLQTVLEL--GPTVPLFGVCM-GLQCIGEA 113 (125)
Q Consensus 87 ~~~~I~~~--~~~~PvLGIC~-G~QlLa~a 113 (125)
..+.++++ ..+.++||||- |+|+|++.
T Consensus 1104 ~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1104 VRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 34555563 46999999998 99999873
No 114
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=98.29 E-value=3.2e-06 Score=63.23 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=54.6
Q ss_pred HHHHHHhCCCeEEEEeCCC----------------------------------CCHHHHhcCCCCEEEECCCCCCcC---
Q 033201 40 LCQYMGELGYHFEVYRNDE----------------------------------LTVEELKRKNPRGVLISPGPGAPQ--- 82 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~----------------------------------~~~~~~~~~~~dgiIi~GG~~~~~--- 82 (125)
..+.|++.|+++++..+.. ..++++...+||+|+|+||++...
T Consensus 28 p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~l~ 107 (221)
T cd03141 28 PYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLP 107 (221)
T ss_pred HHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcccccccc
Confidence 5678888999988874321 012222334799999999975322
Q ss_pred CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~ 114 (125)
+.+.+.++|+++ +++++|.+||.|.++|+.+-
T Consensus 108 ~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 108 DNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 345578999885 78999999999999999864
No 115
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.27 E-value=1.2e-06 Score=72.34 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=49.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTV 98 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~~~~ 98 (125)
.+|+|+.....+...=.+.|++.- .+...+. .++++ ++|+|+|+||.....+.. .+.+.|+++ +++.
T Consensus 248 ~~Iav~~~~~~~nf~~~~~L~~~~-~~~f~~~----~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~ 320 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDFEPLRYEA-FVKFLDL----DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG 320 (475)
T ss_pred cEEEEEcCCcccCccChHHHhhCC-CeEEeCC----ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence 689988633322211233454441 2222222 22443 789999999853222211 135667764 7889
Q ss_pred CEEEEchHHHHHHHHh
Q 033201 99 PLFGVCMGLQCIGEAF 114 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~ 114 (125)
||+|||-|+|+|++.+
T Consensus 321 pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 321 IVIGICGGYQMLGKEL 336 (475)
T ss_pred cEEEEcHHHHHhhhhh
Confidence 9999999999999976
No 116
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.27 E-value=8.7e-07 Score=63.07 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201 68 NPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
++|+|+|+||.-...+.. .+.+.|+++ ++++||+|||-|+|+|++.+=
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 799999999854322221 245777774 889999999999999999884
No 117
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.25 E-value=8.7e-06 Score=73.76 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCC--cCCch-----------HH
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQDSG-----------IS 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~--~~~~~-----------~~ 87 (125)
....||+|+-+.+.. ......+++..|+++..+...+....... .+++|++++||.+- +...+ .+
T Consensus 927 ~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l-~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~ 1005 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL-DTFSGLIIGGASGTLDSEVGARALAAALLRNQAF 1005 (1202)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch-hheEEEEEcCcCCCCccchHHHHHHHHhhcchHH
Confidence 346789999887765 46788999999999888875432211211 37899999888542 22111 12
Q ss_pred HHHHHH-h-CCCCCEEEEch-HHHHHHHH
Q 033201 88 LQTVLE-L-GPTVPLFGVCM-GLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~-~-~~~~PvLGIC~-G~QlLa~a 113 (125)
.+.+++ + ..+.++||||- |+|+|+..
T Consensus 1006 ~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1006 LRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 444555 3 56999999998 99999883
No 118
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.21 E-value=7e-06 Score=58.60 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHhCCCeEEE--EeCCC---------------CCHHHHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCC
Q 033201 39 NLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPT 97 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v--~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~ 97 (125)
.+.+.|+..|+++++ +..+. .++++....++|.++|+||.... .+.+.+.++|+++ .++
T Consensus 17 ~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~ 96 (179)
T TIGR01383 17 ITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG 96 (179)
T ss_pred HHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC
Confidence 366778888876664 43320 11222222469999999985322 2345578999985 788
Q ss_pred CCEEEEchHHHHHHHH
Q 033201 98 VPLFGVCMGLQCIGEA 113 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a 113 (125)
++|.+||.|..+|+.+
T Consensus 97 ~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 97 KLVAAICAAPAVLLAA 112 (179)
T ss_pred CEEEEEChhHHHHHhc
Confidence 9999999999999986
No 119
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.16 E-value=1.7e-05 Score=57.10 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=38.6
Q ss_pred CCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.++|.++|+||.... .+...+.++|+++ .++++|.+||-|.++|+++
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 379999999996543 2345678999985 7889999999999999986
No 120
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.16 E-value=5.5e-06 Score=67.89 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=54.7
Q ss_pred CeEEEEE-CCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH-----HHHHHHH-hCC
Q 033201 25 NPIIVID-NYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-LGP 96 (125)
Q Consensus 25 ~~I~vid-~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~-----~~~~I~~-~~~ 96 (125)
.||+|-- ---+| ...-.+.|++. +++..+++- ..++++ ++|+|+|+||.....+ .. ..+.|++ .++
T Consensus 234 ~~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~-~~L~~n~~~~~i~~~~~~ 307 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATIERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHA-DALADSPALDELADRAAD 307 (433)
T ss_pred CeEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHH-HHHHhCCcHHHHHHHHHC
Confidence 5888872 11122 22344678888 777766542 123344 6899999999633222 11 1356666 478
Q ss_pred CCCEEEEchHHHHHHHHh
Q 033201 97 TVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (125)
++||+|+|-|+|+|++.+
T Consensus 308 G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 308 GLPVLGECGGLMALAESL 325 (433)
T ss_pred CCcEEEEehHHHHhhccc
Confidence 999999999999999988
No 121
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.10 E-value=2.4e-06 Score=62.71 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=45.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCC-CCEEEEchHHHHHHHH
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA 113 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~~-~~~-~PvLGIC~G~QlLa~a 113 (125)
=.+.|+++|.+...++. .+++. ++||+||+||-++.- +...+.+.|+++ ..+ +|++|.|-|+-+|+..
T Consensus 11 H~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 11 HIRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp HHHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred HHHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 35678889998876653 45664 799999999944321 111245677774 454 9999999999999874
Q ss_pred hC
Q 033201 114 FG 115 (125)
Q Consensus 114 ~G 115 (125)
..
T Consensus 85 v~ 86 (188)
T PF01174_consen 85 VE 86 (188)
T ss_dssp EC
T ss_pred hh
Confidence 43
No 122
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=98.10 E-value=1.4e-06 Score=61.00 Aligned_cols=55 Identities=22% Similarity=0.415 Sum_probs=41.8
Q ss_pred CCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 59 LTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 59 ~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+++++...+||+|||+||...+. +...+.++++++ +++|||.+||.|..+|+.+
T Consensus 28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 346677666899999999976332 235678999986 7899999999999999887
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.08 E-value=1.3e-05 Score=66.22 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=51.8
Q ss_pred CCeEEEEECC--CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH-----HHHHHHH-h
Q 033201 24 KNPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-L 94 (125)
Q Consensus 24 ~~~I~vid~~--~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~-----~~~~I~~-~ 94 (125)
..+|+|+... +.|+. .+.|+. .+..+..+++. +++. ++|.+||+|+.....|... +.+.|.+ .
T Consensus 251 ~i~Iav~~lp~isNFtD--~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~ 322 (486)
T COG1492 251 AIRIAVIRLPRISNFTD--FDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYA 322 (486)
T ss_pred ceEEEEecCCCcccccc--chhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHH
Confidence 3578888542 23331 233333 47777777653 3444 5899999877554444322 2334444 5
Q ss_pred CCCCCEEEEchHHHHHHHHh
Q 033201 95 GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~ 114 (125)
.++.||+|||-|+|||...+
T Consensus 323 ~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 323 RKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred hCCCCEEEEcchHHhhhhhh
Confidence 66899999999999998765
No 124
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.99 E-value=2.8e-05 Score=67.37 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=63.6
Q ss_pred CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCcC---
Q 033201 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ--- 82 (125)
Q Consensus 23 ~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~~--- 82 (125)
.+++|+|+-..+.. ...+.+.|++.|+.+.++..... ++++.....||+|+|+||...+.
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 56788888543322 23477889999999988764311 11122223599999999865432
Q ss_pred CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.......+|+++ ...|+|.+||-|.++|+.+
T Consensus 676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 344578899984 8899999999999999975
No 125
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.98 E-value=1.3e-05 Score=54.58 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEchHHHHH
Q 033201 67 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~---~~~~~~I~~-~~~~~PvLGIC~G~QlL 110 (125)
.++|.+|++||.....-. ..-.+.|++ +++++|+||||+|+-+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 379999999975432110 001567777 47889999999998665
No 126
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.90 E-value=6.6e-05 Score=53.64 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHHHHHHhCC-----CeEEEEeCCCCC----------HH-HHh-cCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCC
Q 033201 39 NLCQYMGELG-----YHFEVYRNDELT----------VE-ELK-RKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTV 98 (125)
Q Consensus 39 ~i~~~l~~~g-----~~~~v~~~~~~~----------~~-~~~-~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~ 98 (125)
.+.+.|+..+ ++++++..+... .+ .+. ...||++||+||+... .....+.++|+++ ++++
T Consensus 16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k 95 (183)
T cd03139 16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAK 95 (183)
T ss_pred eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCC
Confidence 3566666666 777776543110 00 111 1369999999996432 2345578999985 7899
Q ss_pred CEEEEchHHHHHHHH
Q 033201 99 PLFGVCMGLQCIGEA 113 (125)
Q Consensus 99 PvLGIC~G~QlLa~a 113 (125)
++.+||.|..+|+.+
T Consensus 96 ~i~aic~g~~~La~a 110 (183)
T cd03139 96 YVTSVCTGALLLAAA 110 (183)
T ss_pred EEEEEchHHHHHHhc
Confidence 999999999999875
No 127
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.88 E-value=2.6e-05 Score=59.18 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHH
Q 033201 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL 92 (125)
Q Consensus 23 ~~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~ 92 (125)
.++||++|..-+ .|...+.+.+++.|+++..++..+...+.+. +.|+|+++||..... ....+.+.|+
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~ 107 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence 467899994322 2345577888999999887764322222243 789999999943211 0111356677
Q ss_pred H-hCCCCCEEEEchHHHHHHHHhC
Q 033201 93 E-LGPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 93 ~-~~~~~PvLGIC~G~QlLa~a~G 115 (125)
+ +++++|+.|.|-|+-+++...+
T Consensus 108 ~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 108 EAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHCCCEEEEECHHHHhhhccce
Confidence 6 5788999999999988887655
No 128
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.71 E-value=5.5e-05 Score=59.26 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCCc--h-HHHHHHHHhCCCeEEE--EeCC-----C----------CCHHHHhcCCCCEEEECCCCCCcC
Q 033201 23 NKNPIIVIDNYDSF--T-YNLCQYMGELGYHFEV--YRND-----E----------LTVEELKRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 23 ~~~~I~vid~~~~~--~-~~i~~~l~~~g~~~~v--~~~~-----~----------~~~~~~~~~~~dgiIi~GG~~~~~ 82 (125)
...+|+|++.-..- + ..+.+.|.....++++ +... . .+++++....+||+||+|.|-.-.
T Consensus 33 rpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l 112 (298)
T PF04204_consen 33 RPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL 112 (298)
T ss_dssp --EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred cceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence 44789999875432 1 2355666655555544 3221 1 123444456899999999987543
Q ss_pred CchH------HHHHHHHh-CCCCCEEEEchHHHH-HHHHhCCeeee
Q 033201 83 DSGI------SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGGESSK 120 (125)
Q Consensus 83 ~~~~------~~~~I~~~-~~~~PvLGIC~G~Ql-La~a~Gg~v~~ 120 (125)
+.++ +.+++.-. .+..+.|.||+|+|. |...+|-.-..
T Consensus 113 ~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~ 158 (298)
T PF04204_consen 113 PFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYP 158 (298)
T ss_dssp -GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EE
T ss_pred CcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCccc
Confidence 3322 22333222 355899999999999 77777755443
No 129
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.67 E-value=3.5e-05 Score=57.96 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc----CCc-hHHHHHHHH-hCCCCCEEEEchHHHHHHH
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP----QDS-GISLQTVLE-LGPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~----~~~-~~~~~~I~~-~~~~~PvLGIC~G~QlLa~ 112 (125)
.+.+..+.+|+.+++.+.+.. +.++...+|-+++.||..-. .+. ..-.+-+++ +++++|+|.||-|.|+|.+
T Consensus 25 ~Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 25 VLRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred eehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 356777889999998876421 22333479999987773210 011 112345666 5889999999999999987
Q ss_pred Hh
Q 033201 113 AF 114 (125)
Q Consensus 113 a~ 114 (125)
.+
T Consensus 103 yY 104 (250)
T COG3442 103 YY 104 (250)
T ss_pred ee
Confidence 54
No 130
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.67 E-value=0.00019 Score=54.32 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEeCCC---------------CCHHHHhcCCCCEEEECCC-CCCcC--CchHHHHHHHHh-CCCCCE
Q 033201 40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL 100 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG-~~~~~--~~~~~~~~I~~~-~~~~Pv 100 (125)
..+.|++.|+++++..++. ....|.....||.|||+|| ++.-+ +.....++++++ +.++++
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI 103 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence 3578899999998875431 1122222358999999999 66433 445567888885 789999
Q ss_pred EEEchHHHHH
Q 033201 101 FGVCMGLQCI 110 (125)
Q Consensus 101 LGIC~G~QlL 110 (125)
..||.|--++
T Consensus 104 aaICaap~~a 113 (247)
T KOG2764|consen 104 AAICAAPLTA 113 (247)
T ss_pred EEeecchHHH
Confidence 9999975333
No 131
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.58 E-value=0.00076 Score=52.65 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~-~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.++|.|||+||.... .....+.++|++. .++++|.+||-|..+|+.+
T Consensus 74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 378999999985422 2244578899885 7889999999999999875
No 132
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.52 E-value=0.00049 Score=53.91 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=56.3
Q ss_pred CCCeEEEEECCCCc--h-HHHHHHHHhCCCe--EEEEeCC-----C----------CCHHHHhcCCCCEEEECCCCCCcC
Q 033201 23 NKNPIIVIDNYDSF--T-YNLCQYMGELGYH--FEVYRND-----E----------LTVEELKRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 23 ~~~~I~vid~~~~~--~-~~i~~~l~~~g~~--~~v~~~~-----~----------~~~~~~~~~~~dgiIi~GG~~~~~ 82 (125)
...+|+|++.-..- + ..+.+.|.....+ ++.+... . .+++++....+||+||+|.|-.-.
T Consensus 34 rpL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l 113 (300)
T TIGR01001 34 RPLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELV 113 (300)
T ss_pred cceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCC
Confidence 45789999864321 2 3477777665555 4433322 0 234556556899999999987433
Q ss_pred Cch--H----HHHHHHHh-CCCCCEEEEchHHHH-HHHHhC
Q 033201 83 DSG--I----SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFG 115 (125)
Q Consensus 83 ~~~--~----~~~~I~~~-~~~~PvLGIC~G~Ql-La~a~G 115 (125)
+.+ . +.+++.-. .+-...|.||+|+|. |-..+|
T Consensus 114 ~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yG 154 (300)
T TIGR01001 114 PFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYG 154 (300)
T ss_pred CcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcC
Confidence 222 1 22222222 456789999999999 445555
No 133
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.51 E-value=0.00023 Score=51.52 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=37.5
Q ss_pred CCCCEEEECCCCCCc-----CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 67 KNPRGVLISPGPGAP-----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~-----~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.++|.|+|+||.... ...+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 379999999986542 2234578899885 7889999999999999985
No 134
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.41 E-value=0.00097 Score=48.61 Aligned_cols=88 Identities=15% Similarity=0.227 Sum_probs=56.3
Q ss_pred CeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-
Q 033201 25 NPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid~~~~~~~---~i~~~l~~~--g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~- 94 (125)
.-|.|+...+.|.+ -+.+.+.+. ++.+++.+. .+.+++. ++|++||+||-..... ...+.+-+.++
T Consensus 12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fV 87 (226)
T KOG3210|consen 12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFV 87 (226)
T ss_pred eEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHh
Confidence 34566666556643 244555555 566666665 3566764 7999999999654321 11144555564
Q ss_pred -CCCCCEEEEchHHHHHHHHhCC
Q 033201 95 -GPTVPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a~Gg 116 (125)
+..+|+.|.|-||-.|..-+-+
T Consensus 88 hn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 88 HNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred cCCCccceeechhhhhhhhhhcC
Confidence 4559999999999998876644
No 135
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=97.32 E-value=0.00061 Score=52.33 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCCCCcCCchHHHH-----HHHHh--CCCCCEEEEchHHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQ-----TVLEL--GPTVPLFGVCMGLQ 108 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~~~~~~~~~~~~-----~I~~~--~~~~PvLGIC~G~Q 108 (125)
.+.+++++..|+.+..+.+++ +.+.+ ..+-.+|||++||.....+.-+..+ .|.+. ....||.|||+|+.
T Consensus 80 ASYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE 158 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFE 158 (340)
T ss_pred HHHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHH
Confidence 356778888999998888763 33332 1236899999999544444433322 23333 35789999999999
Q ss_pred HHHHHhC
Q 033201 109 CIGEAFG 115 (125)
Q Consensus 109 lLa~a~G 115 (125)
+|.-...
T Consensus 159 ~lsmiIS 165 (340)
T KOG1559|consen 159 LLSMIIS 165 (340)
T ss_pred HHHHHHh
Confidence 9876543
No 136
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=97.27 E-value=0.00052 Score=48.47 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCCCEEEECCCCC--CcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 67 ~~~dgiIi~GG~~--~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.++|.+||+||+. .....+.+.+++++. .+++++.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4799999999987 122345577888885 7889999999999999987
No 137
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.24 E-value=0.0017 Score=47.93 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC-CCHHHHh--cCCCCEEEECCCCCCcC----CchHHHHH
Q 033201 22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPGAPQ----DSGISLQT 90 (125)
Q Consensus 22 ~~~~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~--~~~~dgiIi~GG~~~~~----~~~~~~~~ 90 (125)
+...+|++|.... .+...+.+.+++.|++...+.... .+.+++. -.+.|+|+++||..... ......+.
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 27 GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence 3568999996543 345568888999999887665421 1112211 14799999999843111 01112344
Q ss_pred HHH-hCCCCCEEEEchHHHHHHHH
Q 033201 91 VLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 91 I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
|++ +.+++|+.|+|-|+.+++..
T Consensus 107 i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 107 ILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHcCCeEEEcCHHHHHhhhc
Confidence 444 56889999999999999985
No 138
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=97.14 E-value=0.0011 Score=47.57 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~-~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.++|.+||+||.... ...+...++|+++ ++++.|.+||-|..+|+++
T Consensus 63 ~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 368999999986533 2344578899885 7889999999999999975
No 139
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.04 E-value=0.0022 Score=52.64 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCeEEEEE-CCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-
Q 033201 23 NKNPIIVID-NYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL- 94 (125)
Q Consensus 23 ~~~~I~vid-~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~- 94 (125)
.+.||+|.. ---.| .+.-.+.|++.|++++.+.+- .-++++ .++|++.|+||.-..+ +.....+.|+++
T Consensus 244 ~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~ 320 (451)
T COG1797 244 LGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANESMRRAIKAFA 320 (451)
T ss_pred cCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHH
Confidence 347899883 21122 234667899999999888652 112344 3699999999842211 223356788885
Q ss_pred CCCCCEEEEchHHHHHHHHh
Q 033201 95 GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~ 114 (125)
+.++||+|=|-|+--|++.+
T Consensus 321 ~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 321 AAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HcCCceEEecccceeehhhe
Confidence 78999999999999988877
No 140
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.011 Score=45.68 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=55.5
Q ss_pred cCCC-CCCeEEEEECCCCc--hH-HHHHHHHhC--CCeEEEEeCC-----C----------CCHHHHhcCCCCEEEECCC
Q 033201 19 KSKN-NKNPIIVIDNYDSF--TY-NLCQYMGEL--GYHFEVYRND-----E----------LTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 19 ~~~~-~~~~I~vid~~~~~--~~-~i~~~l~~~--g~~~~v~~~~-----~----------~~~~~~~~~~~dgiIi~GG 77 (125)
..|. ...+|++++.-..- ++ -+.|.|..- ..+++.++.+ . .+.+++....+||+||+|.
T Consensus 29 ~~QdIRPL~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGA 108 (307)
T COG1897 29 KHQDIRPLKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGA 108 (307)
T ss_pred hhcCCccceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCC
Confidence 4444 44689999764321 22 255555542 2334443322 1 2355666678999999999
Q ss_pred CCCcCCchH--HHHHHHH---h--CCCCCEEEEchHHHHHHHHhCC
Q 033201 78 PGAPQDSGI--SLQTVLE---L--GPTVPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 78 ~~~~~~~~~--~~~~I~~---~--~~~~PvLGIC~G~QlLa~a~Gg 116 (125)
|-.-.+.++ ..+.+++ . .+-.-.|-||+|+|.--.++=|
T Consensus 109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yG 154 (307)
T COG1897 109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYG 154 (307)
T ss_pred cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcC
Confidence 875433322 1222222 1 2334689999999987766654
No 141
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=96.26 E-value=0.019 Score=43.25 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCch------HHHH
Q 033201 24 KNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQ 89 (125)
Q Consensus 24 ~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~------~~~~ 89 (125)
+++|++|-.-+ -|.....+.|++.|+++.-++....+.+++.. .+.|.|.++||. -..-- .+.+
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN--TF~LL~~lke~gld~ 109 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN--TFNLLQELKETGLDD 109 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch--HHHHHHHHHHhCcHH
Confidence 66899994321 23455778899999999888765455666642 358999998883 22111 1357
Q ss_pred HHHH-hCCCCCEEEEchHHH
Q 033201 90 TVLE-LGPTVPLFGVCMGLQ 108 (125)
Q Consensus 90 ~I~~-~~~~~PvLGIC~G~Q 108 (125)
+|++ .++++|..|+--|.-
T Consensus 110 iIr~~vk~G~~YiG~SAGA~ 129 (224)
T COG3340 110 IIRERVKAGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHcCCceEEeccCce
Confidence 7887 689999999877653
No 142
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=96.03 E-value=0.069 Score=38.60 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=43.9
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-C--CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh---CC
Q 033201 25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GP 96 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~~~l~~-~--g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~---~~ 96 (125)
|+++|+ ....+.+..+.+++.+ + |.++++++..+....++. +||.||+ |+|-... -...+.+++++. -.
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~ 77 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN 77 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence 466666 3344556666555533 1 677888776532222333 7999888 5443221 233445666442 25
Q ss_pred CCCEEEEchH
Q 033201 97 TVPLFGVCMG 106 (125)
Q Consensus 97 ~~PvLGIC~G 106 (125)
++|+.-+|.|
T Consensus 78 ~K~v~~F~v~ 87 (177)
T PRK11104 78 QMPSAFFSVN 87 (177)
T ss_pred CCeEEEEEec
Confidence 6777777766
No 143
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.94 E-value=0.049 Score=42.26 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=49.2
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--------TVEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~--------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
|||+++.+.+. . ...+.+||++.|+++.+...... ...++...++|.+|..||-+ .+.+.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence 67888866432 1 23577889999999887532100 00112223689999999943 355666
Q ss_pred HHhCCCCCEEEEchHH
Q 033201 92 LELGPTVPLFGVCMGL 107 (125)
Q Consensus 92 ~~~~~~~PvLGIC~G~ 107 (125)
+....++|++||=.|.
T Consensus 75 ~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 75 HKTKKDIPILGINMGT 90 (277)
T ss_pred HhcCCCCeEEEEeCCC
Confidence 6335689999998886
No 144
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.93 E-value=0.061 Score=42.10 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=49.1
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC----------------CHHHHhcCCCCEEEECCCCCCcCC
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD 83 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~----------------~~~~~~~~~~dgiIi~GG~~~~~~ 83 (125)
|+|.++-+... ....+.+||++.|+++.+-+.... +.+++. ..+|.+|..||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGD----- 74 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGD----- 74 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCc-----
Confidence 57888855432 124577889999998876432100 011222 258999999993
Q ss_pred chHHHHHHHHh-CCCCCEEEEchHH
Q 033201 84 SGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 84 ~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
+.+....+.+ ..++|||||=.|.
T Consensus 75 -GT~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 75 -GTFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred -HHHHHHHHHhcCCCCCEEEEecCC
Confidence 3456666765 5689999998875
No 145
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.032 Score=49.70 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch-----------HH
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------IS 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~-----------~~ 87 (125)
.+.+||+|+--.+.. ...+...+-..|++..=+...+.-.......+|-||+.+||.. ++.... ..
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence 345799999544443 3457778888888764333221111112123688999999954 221111 11
Q ss_pred HHHHHHh--CCCCCEEEEchHHHHHHHH
Q 033201 88 LQTVLEL--GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~~--~~~~PvLGIC~G~QlLa~a 113 (125)
..-..+| ..+.=-||||.|+|+|++.
T Consensus 1136 ~~QF~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHHHHHhcCCCceeeecccHhHHHHHh
Confidence 1222222 3566789999999999874
No 146
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.83 E-value=0.032 Score=39.04 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCEEEECCCCCCcC---CchHHHHHHHHhCCCCCEEEEchHHHHHHH
Q 033201 68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~---~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~ 112 (125)
..|.+|+.||-..|. +.++..+++.+.. ++|+.|+|+ |-|..+
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~-~kkliGvCf-m~mF~r 130 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEELG-NKKLIGVCF-MNMFER 130 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhcC-CCceEEeeH-HHHHHH
Confidence 489999999977664 3344567777654 469999997 444433
No 147
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.78 E-value=0.13 Score=40.37 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=49.2
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC---------------CHHHHhcCCCCEEEECCCCCCcCCc
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiIi~GG~~~~~~~ 84 (125)
++|+++-+.+. ....+.+||++.|+++.+.+.... +..++. .++|.+|..||-
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGD------ 78 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGD------ 78 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCc------
Confidence 46888865432 123577889999998876532100 011221 258999999993
Q ss_pred hHHHHHHHHh-CCCCCEEEEchHH
Q 033201 85 GISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 85 ~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
+.+....+.+ ..++|||||=.|.
T Consensus 79 GT~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HHHHHHHHHhcccCCCEEEEecCC
Confidence 4455666665 5689999998875
No 148
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=95.72 E-value=0.14 Score=39.97 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=49.2
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC----------CCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
++|+++-+.+.- ...+.++|++.|+++.+..... .+.+++. ..+|.+|..||- +.+.+
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGD------Gt~l~ 78 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGD------GTMLG 78 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCc------HHHHH
Confidence 358888654331 2457788888998876643210 0112222 258999999993 34567
Q ss_pred HHHHh-CCCCCEEEEchHH
Q 033201 90 TVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC~G~ 107 (125)
.++.+ ..++|+|||=.|.
T Consensus 79 ~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 79 IGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHHhcCCCCCEEEEcCCC
Confidence 77775 5789999998886
No 149
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.70 E-value=0.1 Score=38.00 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCCEEEECCCCCCcCCc-------------hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee
Q 033201 67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~-------------~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v 118 (125)
..+|++|++||.+..... .+...+.+.+ +.+||+--||...-|+..-||.-+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 469999999998754321 2245566665 789999999999999999998654
No 150
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.64 E-value=0.036 Score=44.80 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=50.1
Q ss_pred CeEEEEECCCCchH---HHHHHHHh-CCCeEEEEeCCCCCHHHHh----cCCCCEEEECCCCCCcCCc---hHHHHHHHH
Q 033201 25 NPIIVIDNYDSFTY---NLCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~---~i~~~l~~-~g~~~~v~~~~~~~~~~~~----~~~~dgiIi~GG~~~~~~~---~~~~~~I~~ 93 (125)
|+|+|..-.+.... .....|++ +.-...+.+.+ ...+. ..+++.+|++||...++.. +.-.+.||+
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~ 77 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ 77 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence 67887743332222 34455554 23233343332 12221 1368999999997655431 223578888
Q ss_pred h-CCCCCEEEEchHHHHHHH
Q 033201 94 L-GPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 94 ~-~~~~PvLGIC~G~QlLa~ 112 (125)
+ .++.-.||||.|.-.-..
T Consensus 78 fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 78 FVENGGGYLGICAGAYYASS 97 (367)
T ss_pred HHHcCCcEEEECcchhhhcc
Confidence 5 778899999999876554
No 151
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=95.60 E-value=0.019 Score=40.42 Aligned_cols=72 Identities=8% Similarity=0.143 Sum_probs=45.9
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCCCEEEEchHH
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGL 107 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~PvLGIC~G~ 107 (125)
...+.+.+++.|+++..++....+.+++.. .+.|+|+++||. +... ..+.+.|++ +.+++|+.|+--|+
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA 79 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA 79 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH
Confidence 446778999999998877764322233221 379999999983 2211 124567777 47789999999998
Q ss_pred HHH
Q 033201 108 QCI 110 (125)
Q Consensus 108 QlL 110 (125)
-++
T Consensus 80 ~i~ 82 (154)
T PF03575_consen 80 MIL 82 (154)
T ss_dssp HCT
T ss_pred hhc
Confidence 664
No 152
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.58 E-value=0.1 Score=41.16 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=49.2
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCCC-------------------HHHHhcCCCCEEEECCCCCC
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-------------------VEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~~-------------------~~~~~~~~~dgiIi~GG~~~ 80 (125)
++|+++-+.+. ....+.+||++.|+++.+....... .+++ ..++|.+|..||-
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGD-- 82 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGD-- 82 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCC--
Confidence 46998865432 1245778899999988775421100 0111 1358999999993
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201 81 PQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
+.+....+.+ ..++|+|||=.|.
T Consensus 83 ----GT~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 83 ----GTILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred ----HHHHHHHHHhccCCCcEEEEecCC
Confidence 3456666665 6789999998874
No 153
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.58 E-value=0.058 Score=41.25 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCCCeEEEEECCCC----chHHHHHHHHhCCCe-EEEEeCCCC---CHHHH-h-cCCCCEEEECCCCCCc----CCchHH
Q 033201 22 NNKNPIIVIDNYDS----FTYNLCQYMGELGYH-FEVYRNDEL---TVEEL-K-RKNPRGVLISPGPGAP----QDSGIS 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~----~~~~i~~~l~~~g~~-~~v~~~~~~---~~~~~-~-~~~~dgiIi~GG~~~~----~~~~~~ 87 (125)
+...||++|-.-++ +...+.+.++++|++ +.+++.... ..++. . -.+.|+|+++||.... .....+
T Consensus 26 ~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 26 GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 44569999964332 234566788889984 666654311 11111 1 1479999999994321 112234
Q ss_pred HHHHHH-hCCCCCEEEEchHHHHHHHHh
Q 033201 88 LQTVLE-LGPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a~ 114 (125)
.+.|++ +.++.|+.|.--|+-+|+...
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA~i~~~~~ 133 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGAAVMSDTM 133 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHHHhcccce
Confidence 567776 578899999999998886544
No 154
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.40 E-value=0.12 Score=38.43 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCC----CchHHHHHHHHhCCCe-EEEEeCCC---CCHHHHh--cCCCCEEEECCCCCCcC----CchHH
Q 033201 22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE---LTVEELK--RKNPRGVLISPGPGAPQ----DSGIS 87 (125)
Q Consensus 22 ~~~~~I~vid~~~----~~~~~i~~~l~~~g~~-~~v~~~~~---~~~~~~~--~~~~dgiIi~GG~~~~~----~~~~~ 87 (125)
+...+|++|...+ .+...+.+++++.|+. ++.+..+. ...+++. -.+.|+|+++||..... ....+
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 3568999996543 3345677888889985 44443321 0111111 13799999999943211 11234
Q ss_pred HHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201 88 LQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
.+.|++ ++++.|+.|.--|+-+++..
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 566776 57899999999999998775
No 155
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.35 E-value=0.15 Score=39.96 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=49.0
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC--C--------CHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~--~--------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
++|+++-+.+.- ...+.+||++.|+++.+.+... . ..+++. .++|.+|..||- +.+..
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGD------GT~L~ 78 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGD------GNMLG 78 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCc------HHHHH
Confidence 458888654321 2357788999999887643210 0 011221 358999999993 34556
Q ss_pred HHHHh-CCCCCEEEEchHH
Q 033201 90 TVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC~G~ 107 (125)
..+.+ ..++|++||=.|.
T Consensus 79 aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 79 AARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHhcCCCCeEEEEECCC
Confidence 66665 4579999999887
No 156
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.34 E-value=0.16 Score=39.66 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=50.3
Q ss_pred CCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCC-------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~-------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
+.++|.++-+.+.. ...+.+||++.|+++.+-+.... ...++. .++|.+|..||- +.+....
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGD------GT~L~aa 81 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGD------GTLISLC 81 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCC------HHHHHHH
Confidence 34579988664432 23467788888988876542100 112222 368999988993 4456677
Q ss_pred HHh-CCCCCEEEEchHH
Q 033201 92 LEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 92 ~~~-~~~~PvLGIC~G~ 107 (125)
+.+ ..++|+|||=.|.
T Consensus 82 ~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 82 RKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 765 5689999998886
No 157
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.33 E-value=0.14 Score=40.35 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHhcCCCCEEEECCCCCC
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dgiIi~GG~~~ 80 (125)
++|.++-+.+. ....+.+||++.|+++.+...... ...++. .++|.+|..||-
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGD-- 78 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGD-- 78 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCc--
Confidence 46888866433 124577889999998876432100 011221 258999999993
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 81 PQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
+.+....+.+ ..++|+|||=.|
T Consensus 79 ----GTlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 79 ----GTVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred ----HHHHHHHHHhcCCCCcEEEEeCC
Confidence 3456677765 678999999776
No 158
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=95.00 E-value=0.37 Score=33.85 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cC--CCCEEEECCCCC
Q 033201 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RK--NPRGVLISPGPG 79 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~--~~dgiIi~GG~~ 79 (125)
+++...+..+|++.|+++..+..-..+.+++ . .. .+|.||.+||.+
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 4455678899999999876553211122222 1 12 699999999954
No 159
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=94.60 E-value=0.017 Score=40.95 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=47.9
Q ss_pred CCCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------------HHHHhcCCCCEEEECCCCCCcC--
Q 033201 22 NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ-- 82 (125)
Q Consensus 22 ~~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~~--------------~~~~~~~~~dgiIi~GG~~~~~-- 82 (125)
+...+|+++...+-+ .+.+...+|..+.+...+|..+.. .++....++|.+||.||-..|.
T Consensus 17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~~ 96 (147)
T PF09897_consen 17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKSG 96 (147)
T ss_dssp TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTTS
T ss_pred cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccccCCCC
Confidence 556789888764433 344555667777777777753110 0111113589999999976664
Q ss_pred -CchHHHHHHHHhCCCCCEEEEch
Q 033201 83 -DSGISLQTVLELGPTVPLFGVCM 105 (125)
Q Consensus 83 -~~~~~~~~I~~~~~~~PvLGIC~ 105 (125)
+.+...++|.++.. +.+.|||+
T Consensus 97 v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 97 VTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp --HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCHHHHHHHHHHhCc-CCEEEEeh
Confidence 34556788888743 23999997
No 160
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.36 E-value=0.37 Score=37.86 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=46.8
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--CHH---HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (125)
Q Consensus 25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~--~~~---~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~ 94 (125)
++|++|-+.+. . ...+.++|++.|+++.+...... ... ......+|.+|..||- +.+...++.+
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD------GT~l~~~~~~ 77 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGD------GTVLAAARHL 77 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCc------HHHHHHHHHh
Confidence 45888855432 1 22466788889999876543210 000 1112358999999993 3455666665
Q ss_pred -CCCCCEEEEch
Q 033201 95 -GPTVPLFGVCM 105 (125)
Q Consensus 95 -~~~~PvLGIC~ 105 (125)
..++|++||=.
T Consensus 78 ~~~~~pv~gin~ 89 (305)
T PRK02645 78 APHDIPILSVNV 89 (305)
T ss_pred ccCCCCEEEEec
Confidence 57899999987
No 161
>PRK05569 flavodoxin; Provisional
Probab=94.27 E-value=1.1 Score=30.46 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=42.3
Q ss_pred eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-Cc--hHHHHHHHHh---
Q 033201 26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS--GISLQTVLEL--- 94 (125)
Q Consensus 26 ~I~vi-d~~~~~~~~i~~~l----~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~--~~~~~~I~~~--- 94 (125)
+|+|+ ....+.+..+.+.+ ++.|.++++++.......++. ++|+||+ |.|---. .. ..+..++..+
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~ 79 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT 79 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence 56666 33345565555554 446888888876544445554 7999998 6653111 11 2344555543
Q ss_pred C-CCCCEEEEc
Q 033201 95 G-PTVPLFGVC 104 (125)
Q Consensus 95 ~-~~~PvLGIC 104 (125)
. .++++.-+|
T Consensus 80 ~~~~K~v~~f~ 90 (141)
T PRK05569 80 PNENKKCILFG 90 (141)
T ss_pred CcCCCEEEEEe
Confidence 2 466654443
No 162
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=94.26 E-value=0.61 Score=33.31 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCeEEEEEC-------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hh----cCCCCEEEECCCCC
Q 033201 23 NKNPIIVIDN-------YDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~-------~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~----~~----~~~~dgiIi~GG~~ 79 (125)
.+.|+.||-- .++....+..+|++.|+++..+..-..+.++ +. ..++|.||.+||.+
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3456666621 2344567889999999987654321111222 11 13699999999965
No 163
>PRK05568 flavodoxin; Provisional
Probab=94.02 E-value=1.3 Score=30.18 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=42.8
Q ss_pred eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC---chHHHHHHHHh---
Q 033201 26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL--- 94 (125)
Q Consensus 26 ~I~vi-d~~~~~~~~i~~~l----~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~---~~~~~~~I~~~--- 94 (125)
+++|+ ....+++..+.+.+ ++.|.++++++..+....++. ++|+||+ |.|---.. ...+..++.++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~ 79 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL 79 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence 45555 33445566555544 457899988887644445554 7999988 55432111 12344555443
Q ss_pred CCCCCEEEEch
Q 033201 95 GPTVPLFGVCM 105 (125)
Q Consensus 95 ~~~~PvLGIC~ 105 (125)
..++++.-+|.
T Consensus 80 ~~~k~~~~f~t 90 (142)
T PRK05568 80 VKGKKLVLFGS 90 (142)
T ss_pred hCCCEEEEEEc
Confidence 24566555543
No 164
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.90 E-value=0.48 Score=37.11 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=47.9
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC-------C---HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------T---VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~-------~---~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
++|+|+-+... ....+.++|++.|+++.+.+.... . ..++ ...+|.+|..||-+ .+..
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~ 77 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLG 77 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHH
Confidence 35888865432 123577788889999877542110 0 0111 13588999999843 3455
Q ss_pred HHHHh-CCCCCEEEEchHH
Q 033201 90 TVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC~G~ 107 (125)
..+.+ ..++|++||=.|.
T Consensus 78 ~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 78 AARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHHhcCCCCCEEEEeCCc
Confidence 56665 5789999998874
No 165
>PLN02929 NADH kinase
Probab=93.69 E-value=0.28 Score=38.67 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G 106 (125)
..+.++|++.|+++..+.-.+. .+. ..++|.+|..||-+ .+....+.+..++||+||=.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r~~~--~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLRNEL--SQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeecccc--ccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence 4577899999999866542211 111 13789999999943 344555556667999999888
No 166
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=93.40 E-value=0.2 Score=31.92 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=48.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
|+|+|........+.++|+..|+ .+............+....+|.+++.-...+ .+.....+.|++...+.|++.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 67888766666778899998898 6655432111122234457999998543222 22334556666656789999888
No 167
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.29 E-value=0.61 Score=35.75 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.0
Q ss_pred CeEEEEECCCCc--hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~--~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
|++.++...++. ...+.++|.+.|..+...... . + ...+.|.+|..||-+ .+....+.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence 577777554432 345778888888776543221 1 1 123789999999943 344555555 799999
Q ss_pred EchHH
Q 033201 103 VCMGL 107 (125)
Q Consensus 103 IC~G~ 107 (125)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 98775
No 168
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=93.01 E-value=0.39 Score=34.80 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=47.2
Q ss_pred CeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh---C
Q 033201 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL---G 95 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~---~ 95 (125)
||+||+ .-.++.+.. +..-|++.|+++++.+..+ ..++...+||.||| |.|--... ......++++. -
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--~~~~~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~~e~L 77 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--VEEPALEDYDAVVI-GASIRYGHFHEAVQSFVKKHAEAL 77 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--hhccChhhCceEEE-ecchhhhhhHHHHHHHHHHHHHHH
Confidence 566766 233444544 4455688899999998653 23333358999999 43221111 12234555542 3
Q ss_pred CCCCEEEEchHH
Q 033201 96 PTVPLFGVCMGL 107 (125)
Q Consensus 96 ~~~PvLGIC~G~ 107 (125)
..+|..-+|.+.
T Consensus 78 ~~kP~A~f~vnl 89 (175)
T COG4635 78 STKPSAFFSVNL 89 (175)
T ss_pred hcCCceEEEeeh
Confidence 568888888754
No 169
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=92.87 E-value=0.3 Score=31.21 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~ 81 (125)
+||+|=+ + ..++.++|++.|+++...... .++ .++|++|++|-..+.
T Consensus 2 kkIAVE~---~-Ls~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 2 KKIAVEE---G-LSNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTNM 48 (80)
T ss_pred CeEEecC---C-chHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCccc
Confidence 5666543 3 347999999999998765422 123 479999999976543
No 170
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.87 E-value=0.46 Score=36.69 Aligned_cols=64 Identities=30% Similarity=0.458 Sum_probs=42.0
Q ss_pred CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 033201 25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT 97 (125)
Q Consensus 25 ~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~--~~ 97 (125)
|+|.++.+..... ..+.++|++.|+++ +. .++|.+|..||- +.+....+.+ . .+
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~~--------~~~Dlvi~iGGD------GT~L~a~~~~~~~~~~ 61 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----DE--------KNPDIVISVGGD------GTLLSAFHRYENQLDK 61 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----CC--------cCCCEEEEECCc------HHHHHHHHHhcccCCC
Confidence 5688886633222 23566777777762 10 257999999993 3455666665 3 58
Q ss_pred CCEEEEchHH
Q 033201 98 VPLFGVCMGL 107 (125)
Q Consensus 98 ~PvLGIC~G~ 107 (125)
+|++||=.|.
T Consensus 62 iPilGIN~G~ 71 (265)
T PRK04885 62 VRFVGVHTGH 71 (265)
T ss_pred CeEEEEeCCC
Confidence 9999998874
No 171
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.82 E-value=0.62 Score=39.64 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=49.2
Q ss_pred CCCeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----H-----HhcCCCCEEEECCCCCCcCCchHHH
Q 033201 23 NKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E-----LKRKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 23 ~~~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~~~~----~-----~~~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
..++|+|+-+... . ...+.+||++.|+++.+.+....... + ....++|.+|..||- +.+.
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD------GT~L 362 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD------GTVL 362 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc------HHHH
Confidence 4467998865332 1 23467788889988876532100000 0 011257999999993 3456
Q ss_pred HHHHHh-CCCCCEEEEchHH
Q 033201 89 QTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 89 ~~I~~~-~~~~PvLGIC~G~ 107 (125)
...+.+ ..++|||||=.|.
T Consensus 363 ~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 363 RASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HHHHHhcCCCCCEEEEcCCC
Confidence 666765 5689999998874
No 172
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=92.60 E-value=0.3 Score=39.01 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCEEEECCCCCCcCC-c-hHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 68 NPRGVLISPGPGAPQD-S-GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~-~-~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+|-+++++|-..... . ..+..+|++. .++.++.|||-|.-+||++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 4788888776443322 2 4478999985 7899999999999999986
No 173
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=91.84 E-value=0.94 Score=30.87 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=28.3
Q ss_pred CCchHHHHHHHHhCCCeEEEE---eCCCCCH-HHHh--cCCCCEEEECCCCC
Q 033201 34 DSFTYNLCQYMGELGYHFEVY---RNDELTV-EELK--RKNPRGVLISPGPG 79 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~---~~~~~~~-~~~~--~~~~dgiIi~GG~~ 79 (125)
+.....+..+|++.|+++... +.+.... +.+. ..++|.||.+||.+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 455567889999999876433 3221111 1121 13699999999965
No 174
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.82 E-value=0.78 Score=35.63 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC----------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
..+.+||++.|+++.+-+.... +.+++. .++|.+|..||- +.+....+.+ ..++|+|||=.|
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGD------GT~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGD------GNMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCc------HHHHHHHHHhccCCCcEEEEeCC
Confidence 3577889999998876542100 112222 258999999993 3455666665 568999999877
No 175
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=91.63 E-value=2.2 Score=29.61 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=29.4
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+....+..+|++.|+++..+..-..+.+++ . ..++|.||.+||.+
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456678899999999887553211122222 1 13799999999955
No 176
>PRK03094 hypothetical protein; Provisional
Probab=91.58 E-value=0.63 Score=29.74 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=32.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~ 81 (125)
+||+|=. + ...+.++|++.|++++-+... .+. ..+|++|++|-..+.
T Consensus 2 ~kIaVE~---~-Ls~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n~ 48 (80)
T PRK03094 2 AKIGVEQ---S-LTDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSNV 48 (80)
T ss_pred CeEEeec---C-cHHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcce
Confidence 4666543 3 346999999999998766431 122 379999999976543
No 177
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=90.98 E-value=2.3 Score=32.59 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=35.8
Q ss_pred CCCCCeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 21 KNNKNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 21 ~~~~~~I~vid~~~~--------~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
++++++|+|+--+.+ -...+.+.|++.|++++.+..+......+...++|.+++.
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 356678988842211 1245888999999999988755333333434578998864
No 178
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=90.48 E-value=1.8 Score=30.91 Aligned_cols=78 Identities=12% Similarity=0.215 Sum_probs=44.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
|+|++++........+...|+..|+.+............+....+|.+++--. .+...+ .....+++.....|++-+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 57899987655666788889989988765432111112233346898887322 122222 233444443346888877
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 s 79 (223)
T PRK10816 79 T 79 (223)
T ss_pred E
Confidence 4
No 179
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=90.27 E-value=2.2 Score=31.04 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=41.6
Q ss_pred CeEEEEECC-CCchHH----HHHHHHh-CCCeEEEEeCCCCC--------------------HHHHhcCCCCEEEECCCC
Q 033201 25 NPIIVIDNY-DSFTYN----LCQYMGE-LGYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGP 78 (125)
Q Consensus 25 ~~I~vid~~-~~~~~~----i~~~l~~-~g~~~~v~~~~~~~--------------------~~~~~~~~~dgiIi~GG~ 78 (125)
++|+|+-.- .+.+.. +.+.+++ .|.++++++..+.. .+++ .++|+||+ |+|
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-gsP 78 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIF-GTP 78 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEE-Eec
Confidence 478888432 233443 4455565 78899888753211 2333 37999988 554
Q ss_pred CCcC-CchHHHHHHHHhC--------CCCCEEEEch
Q 033201 79 GAPQ-DSGISLQTVLELG--------PTVPLFGVCM 105 (125)
Q Consensus 79 ~~~~-~~~~~~~~I~~~~--------~~~PvLGIC~ 105 (125)
---. -...+..++.++. .+||+..++-
T Consensus 79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s 114 (200)
T PRK03767 79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTS 114 (200)
T ss_pred ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEe
Confidence 3211 2233455555431 2566555544
No 180
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=90.23 E-value=2.5 Score=30.56 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
...+|++++........+...|+..|+++............+....+|.+|+--. .+...+ .....+++.....|++
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999987655666788889889988865532111111223346898887332 122222 2344455433468888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-++-
T Consensus 82 ~ls~ 85 (239)
T PRK09468 82 MLTA 85 (239)
T ss_pred EEEC
Confidence 8854
No 181
>PRK06703 flavodoxin; Provisional
Probab=90.20 E-value=2.9 Score=28.81 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=29.1
Q ss_pred CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
|+++|+ ....+.+..+. +.+++.|.++++.+.++....++. ++|.|||
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence 466666 33334455444 445667888888776544444554 7899888
No 182
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=90.16 E-value=2.9 Score=30.02 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=43.0
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCC-H-HHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHHH
Q 033201 35 SFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQ 108 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~-~-~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~Q 108 (125)
+....+.++|++.|+++..+. .|+.. . +.+. ...+|.||.+||-+ +...+...+.++++ -++|+.+.=--.+
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~~-~~~~l~~~~e~~~ 96 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAKA-FGRPLVLDEEALE 96 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHHH-hCCCcccCHHHHH
Confidence 445568899999999875432 22111 1 1121 13689999999955 44333334555542 1245555444445
Q ss_pred HHHHHhC
Q 033201 109 CIGEAFG 115 (125)
Q Consensus 109 lLa~a~G 115 (125)
.|-..+.
T Consensus 97 ~i~~~~~ 103 (170)
T cd00885 97 RIEARFA 103 (170)
T ss_pred HHHHHHH
Confidence 5554444
No 183
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=90.14 E-value=2.2 Score=36.04 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCeEEEEECCCC-----chHHHHHHHH-hCCCeEEEEeCCCC----------------CHHHHh--cCCCCEEEECCCCC
Q 033201 24 KNPIIVIDNYDS-----FTYNLCQYMG-ELGYHFEVYRNDEL----------------TVEELK--RKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~~~-----~~~~i~~~l~-~~g~~~~v~~~~~~----------------~~~~~~--~~~~dgiIi~GG~~ 79 (125)
.++|+||-+... ....+.+||+ +.|+++.+-+.... +..++. ..++|.+|..||-
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGD- 272 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGD- 272 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCc-
Confidence 567888865432 1234677888 47888766432100 001111 1258999999993
Q ss_pred CcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 80 APQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 80 ~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
+.+....+.+ ...+|||||=.|
T Consensus 273 -----GTlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 273 -----GTVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred -----HHHHHHHHHhccCCCcEEEEeCC
Confidence 3455666665 567999999876
No 184
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.01 E-value=0.9 Score=35.07 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=42.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
||..++...+.....+.+.|++.=-.. .. ...++|.+|..||- +.+...++.+ ..++|++||
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~---~~--------~~~~~D~vi~iGGD------GT~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKK---LA--------VEDGADYLFVLGGD------GFFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhC---CC--------ccCCCCEEEEECCc------HHHHHHHHHhcCCCCcEEEE
Confidence 577888776655555666665420000 00 11368999999993 4456677765 678999999
Q ss_pred chHH
Q 033201 104 CMGL 107 (125)
Q Consensus 104 C~G~ 107 (125)
=.|.
T Consensus 64 N~G~ 67 (259)
T PRK00561 64 NTGH 67 (259)
T ss_pred ecCC
Confidence 8874
No 185
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=90.00 E-value=0.62 Score=36.01 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=26.8
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201 66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 66 ~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
..++|.+|+.|| ++......+.+ ..++||+||=.|.
T Consensus 74 ~~~~D~ii~lGG------DGT~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGG------DGTFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEES------HHHHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECC------CHHHHHHHHHhccCCCcEEeecCCC
Confidence 458999999999 44566777776 4589999998763
No 186
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.60 E-value=2.2 Score=33.05 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=41.1
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC
Q 033201 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (125)
Q Consensus 25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~ 95 (125)
|||+++-+.+. . ...+.+|| +.|+++.+........+ +....++|.+|..||-+ .+....+.+.
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG------T~L~a~~~~~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDG------TILRTLQRAK 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcH------HHHHHHHHcC
Confidence 56888855432 1 23466777 46877755431100000 11112689999999944 3444445443
Q ss_pred CCCCEEEEchH
Q 033201 96 PTVPLFGVCMG 106 (125)
Q Consensus 96 ~~~PvLGIC~G 106 (125)
.|++||=.|
T Consensus 74 --~PilGIN~G 82 (271)
T PRK01185 74 --GPILGINMG 82 (271)
T ss_pred --CCEEEEECC
Confidence 699999887
No 187
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=89.38 E-value=1.6 Score=32.13 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHH-hCCCeEEEEeC-CCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEchHH
Q 033201 40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 107 (125)
Q Consensus 40 i~~~l~-~~g~~~~v~~~-~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G~ 107 (125)
+.+.|+ +.++++++... +..+.+.+ .++|.||+.....+..+.+ ..+.|++ ++++++++|+..+.
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~l~~~-~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDELTDE-QRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCGS-HH-HHHHHHHHHHTT-EEEEEGGGG
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccc
Confidence 556666 56777776542 11223334 4899999877653322333 3455555 58899999998443
No 188
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=89.36 E-value=3.3 Score=28.28 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=37.5
Q ss_pred CeEEEE-ECCCCchHHHHHH----HHhCCCeEE-EEeCCC--CCHHHHhcCCCCEEEECCCC-CCcCCc-hHHHHHHHHh
Q 033201 25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFE-VYRNDE--LTVEELKRKNPRGVLISPGP-GAPQDS-GISLQTVLEL 94 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~~~----l~~~g~~~~-v~~~~~--~~~~~~~~~~~dgiIi~GG~-~~~~~~-~~~~~~I~~~ 94 (125)
|+++|+ ....+.+..+.+. ++..|.+++ +++..+ ....++ .++|.||+ |.| ...... ..+..++.++
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l 77 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL 77 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence 466666 3233445555544 455677775 333221 111122 36899888 443 222222 2456677665
Q ss_pred -CCCCC--EEEEc
Q 033201 95 -GPTVP--LFGVC 104 (125)
Q Consensus 95 -~~~~P--vLGIC 104 (125)
..++. ++|.|
T Consensus 78 ~~~~k~~avfgtg 90 (140)
T TIGR01754 78 GYKPSNVAIFGTG 90 (140)
T ss_pred cccCCEEEEEEcC
Confidence 34454 45555
No 189
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=89.32 E-value=4.7 Score=30.84 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=47.2
Q ss_pred CeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 25 ~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
+|+++|-|..+- ...+.+.|++.|.++.++..... ...+ ....++|.||+.||-++ +.+.++
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT------l~~v~~ 75 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT------INEVVN 75 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh------HHHHHH
Confidence 477777554211 12466778889998877654322 1221 11236899999999554 344444
Q ss_pred Hh-C-CCCCEEE-EchH-HHHHHHHhC
Q 033201 93 EL-G-PTVPLFG-VCMG-LQCIGEAFG 115 (125)
Q Consensus 93 ~~-~-~~~PvLG-IC~G-~QlLa~a~G 115 (125)
.+ . .+.|.+| |=.| .-.+|+.+|
T Consensus 76 ~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 76 ALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred HHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 43 2 4567777 4433 223344444
No 190
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=88.92 E-value=2.8 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=28.4
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hc--CCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dgiIi~GG~~ 79 (125)
+....+.+++++.|+++.....-....+++ .. .++|.||.+||.+
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 445678889999998876543211122222 11 3599999999955
No 191
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.80 E-value=3.3 Score=30.44 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++.|+++.+...+... .+.+....+||+|+.+.. ..+.......+.++ ..++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence 4667778899999877643211 112233579999997642 12221122334443 456777655
No 192
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=88.69 E-value=7.5 Score=28.34 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=39.9
Q ss_pred eEEEEEC-CCCchHHHHH----HHHhC-CCeEEEEeCCCCC--------------------HHHHhcCCCCEEEECCCCC
Q 033201 26 PIIVIDN-YDSFTYNLCQ----YMGEL-GYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 26 ~I~vid~-~~~~~~~i~~----~l~~~-g~~~~v~~~~~~~--------------------~~~~~~~~~dgiIi~GG~~ 79 (125)
+|+|+-. ..+.+..+.+ .+++. |.++++++..+.. .+++ .++|+||+ |+|-
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-GSPt 78 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIF-GTPT 78 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEE-Eecc
Confidence 6777732 2244444444 44444 8898887753211 1233 37999998 5543
Q ss_pred Cc-CCchHHHHHHHHhC--------CCCCEEEEch
Q 033201 80 AP-QDSGISLQTVLELG--------PTVPLFGVCM 105 (125)
Q Consensus 80 ~~-~~~~~~~~~I~~~~--------~~~PvLGIC~ 105 (125)
-. .-...+..++..+. .+||+..++-
T Consensus 79 y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s 113 (197)
T TIGR01755 79 RFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTS 113 (197)
T ss_pred cccCccHHHHHHHHhccccccccccCCCEEEEEEE
Confidence 21 12233445554431 2577655553
No 193
>PRK06756 flavodoxin; Provisional
Probab=88.52 E-value=6.1 Score=27.08 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=41.6
Q ss_pred CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCC-cCCch-HHHHHHHHh--
Q 033201 25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGA-PQDSG-ISLQTVLEL-- 94 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~----~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~-~~~~~-~~~~~I~~~-- 94 (125)
|+|+|+ ....+.+..+. +.+++.|.++++++..+. ...++. ++|+||+ |.|.- ....+ .+..++.++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l~~ 78 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAMDS 78 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHHhc
Confidence 577777 33334454444 455667888887765322 233443 7999988 44332 11222 244555442
Q ss_pred --CCCCCEEEEch
Q 033201 95 --GPTVPLFGVCM 105 (125)
Q Consensus 95 --~~~~PvLGIC~ 105 (125)
-+++|+.-++.
T Consensus 79 ~~l~~k~~~~fgt 91 (148)
T PRK06756 79 IDLTGKKAAVFGS 91 (148)
T ss_pred CCCCCCEEEEEeC
Confidence 25677655544
No 194
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=88.43 E-value=3.3 Score=29.16 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=44.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
++|++++........+...|+..|+++............+....+|.+|+--.... .+.-...+.+++.....|++.+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~lt 79 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEEE
Confidence 47899987655566788888888887754432111112223346888887432111 11112344455444567888775
No 195
>PRK09271 flavodoxin; Provisional
Probab=88.19 E-value=6.8 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=29.1
Q ss_pred CeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCC
Q 033201 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP 78 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~ 78 (125)
|+|+|+ ....+.+.. +.+.|++.|.++.+...+.....++ ...++|+||| |.|
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~ 60 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW 60 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence 566666 323344444 4556667888887766432222221 1236899888 443
No 196
>PRK06242 flavodoxin; Provisional
Probab=88.05 E-value=3.5 Score=28.17 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=39.5
Q ss_pred CeEEEEEC-C-CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh-C-CCC
Q 033201 25 NPIIVIDN-Y-DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV 98 (125)
Q Consensus 25 ~~I~vid~-~-~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~-~-~~~ 98 (125)
|+++|+-+ . .+.+..+.+.+.+ .+.+ +++......+++ .++|.||+ |+|--.. -...+.+++.++ . .++
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~--~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k 75 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAE--VIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK 75 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcE--EecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence 46666633 2 3667778887755 4443 343322222233 37999988 6553111 223455666654 2 456
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
|+.-+|
T Consensus 76 ~~~~f~ 81 (150)
T PRK06242 76 KAFIFS 81 (150)
T ss_pred eEEEEE
Confidence 665543
No 197
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=87.97 E-value=3.6 Score=29.38 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=43.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
|+|++++........+.+.|+..|+.+............+....+|.+|+--. .+...+ .....+++...+.|++-+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47899987655566788889888887654432111112223346898887322 111121 233444443456788765
No 198
>PRK09267 flavodoxin FldA; Validated
Probab=87.80 E-value=7.5 Score=27.26 Aligned_cols=80 Identities=10% Similarity=-0.030 Sum_probs=40.9
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-C-CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh----CC
Q 033201 25 NPIIVI-DNYDSFTYNLCQYMGE-L-GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL----GP 96 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~~~l~~-~-g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~----~~ 96 (125)
|+|+|+ ....+.+..+.+.+.+ . +.++++++..+....++. +||.||+..+...... ...+.+++..+ -.
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~ 79 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFS 79 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCC
Confidence 467777 3334556667766644 2 235566665433334443 7999888433222122 22334454432 24
Q ss_pred CCCEEEEchH
Q 033201 97 TVPLFGVCMG 106 (125)
Q Consensus 97 ~~PvLGIC~G 106 (125)
++|+.-+..|
T Consensus 80 ~k~vaifg~g 89 (169)
T PRK09267 80 GKKVALFGLG 89 (169)
T ss_pred CCEEEEEecC
Confidence 6776555544
No 199
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=87.79 E-value=5.8 Score=32.65 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=27.4
Q ss_pred chHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+...+..+|++.|+++..+..-..+.+.+ . ..++|.||++||.+
T Consensus 221 N~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 221 NRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred HHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 34467888999999876543211122222 1 13699999999954
No 200
>PRK01215 competence damage-inducible protein A; Provisional
Probab=87.74 E-value=5 Score=30.95 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=27.2
Q ss_pred chHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
....+.+.|.+.|+++.... .|+ .+++ . ..++|.||++||-+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDD--IEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 34568889999999885442 221 2222 1 13579999999954
No 201
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=87.68 E-value=1.6 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (125)
.+|++||+ -+++ +..+.+|+.. .+|+.|||-..-..|...|-++.-
T Consensus 69 GvdaiiIa-----Cf~D-Pgl~~~Re~~-~~PviGi~eAsv~~A~~vgrrfsV 114 (230)
T COG4126 69 GVDAIIIA-----CFSD-PGLAAARERA-AIPVIGICEASVLAALFVGRRFSV 114 (230)
T ss_pred CCcEEEEE-----ecCC-hHHHHHHHHh-CCCceehhHHHHHHHHHhcceEEE
Confidence 58999982 2333 4568888852 399999999999999999988764
No 202
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=87.38 E-value=4.2 Score=29.04 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=45.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~Pv 100 (125)
|.++|++++........+.+.|+..|+++............+....+|.+|+--...+ .+.-.....+++. ....|+
T Consensus 1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 3468999987655666788888888888764332111122233346898887432111 1112233444442 246788
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 80 i~ls 83 (229)
T PRK10161 80 VMLT 83 (229)
T ss_pred EEEE
Confidence 7764
No 203
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=87.21 E-value=5.3 Score=28.19 Aligned_cols=79 Identities=16% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
.++|++++........+...|+..|+.+............+....+|.+++--.. +... -...+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~--~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGL--PDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhhCCCCCEEE
Confidence 3589999876555666788888888877544321111122333468888773221 1111 123344444335678877
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ls 82 (228)
T PRK11083 81 LT 82 (228)
T ss_pred EE
Confidence 74
No 204
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=87.09 E-value=3.1 Score=30.29 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
.+.+++++.|+++.+...+.... +.+...++||+|+.+... ... ..+...+++|+..++
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~---~~~~~~~~ipvv~~~ 84 (267)
T cd06284 20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPT---ALTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHH---HHHHHhcCCCEEEEe
Confidence 46677788999998776542111 112234799999965421 111 222234578888664
No 205
>PRK13055 putative lipid kinase; Reviewed
Probab=86.91 E-value=9.1 Score=30.18 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCeEEEEECCCCch-------HHHHHHHHhCCCeEEEEeCC--CCCHHH----HhcCCCCEEEECCCCCC
Q 033201 24 KNPIIVIDNYDSFT-------YNLCQYMGELGYHFEVYRND--ELTVEE----LKRKNPRGVLISPGPGA 80 (125)
Q Consensus 24 ~~~I~vid~~~~~~-------~~i~~~l~~~g~~~~v~~~~--~~~~~~----~~~~~~dgiIi~GG~~~ 80 (125)
++|+++|-|..+-. ..+.+.|++.|++++++... .....+ ....++|.||+.||-++
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 35788886643211 23567788899887765322 112222 22246899999999654
No 206
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.86 E-value=8.2 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=38.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHh--------------cCCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------------RKNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~--------------~~~~dgiIi~GG~ 78 (125)
.+.++|+|+..+.+-...+.++|.+.|+++...+.... ..+++. ..++|.||+|+|-
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 45568999988765554479999999999987764311 111111 0258999999984
No 207
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=86.71 E-value=1.1 Score=29.73 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=42.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
||+|||....-.+.+...|+-.|..++.+...+.. ........++++|..|..+ ......+.+.+-....|++=+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 68999875555567777888889999888653211 1111235667666555333 111222222222456888743
No 208
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.55 E-value=5 Score=30.99 Aligned_cols=64 Identities=19% Similarity=0.119 Sum_probs=42.1
Q ss_pred eEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C-CCCC
Q 033201 26 PIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP 99 (125)
Q Consensus 26 ~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~-~~~P 99 (125)
++.++.+..... ..+.+||++.|+++..- . .++|.+|..||- +.+....+.+ . .++|
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGD------GT~L~a~~~~~~~~~~p 66 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGD------GTFLQAVRKTGFREDCL 66 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCc------HHHHHHHHHhcccCCCe
Confidence 677776543321 23667888889876421 1 257899999993 3455666665 3 3789
Q ss_pred EEEEch-H
Q 033201 100 LFGVCM-G 106 (125)
Q Consensus 100 vLGIC~-G 106 (125)
++||=. |
T Consensus 67 ilgIn~~G 74 (264)
T PRK03501 67 YAGISTKD 74 (264)
T ss_pred EEeEecCC
Confidence 999988 6
No 209
>PRK03673 hypothetical protein; Provisional
Probab=86.48 E-value=5 Score=32.87 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.7
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHh------cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~ 79 (125)
+....+.+.|.+.|+++.....-..+.+.+. ...+|.||++||-+
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3445688899999998764431111233331 13689999999965
No 210
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=86.45 E-value=6.5 Score=32.30 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=28.2
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+....+.++|++.|+++..+..-..+.+++ . ...+|.||++||-+
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 345568899999999876442110122222 1 13699999999954
No 211
>PLN02727 NAD kinase
Probab=86.24 E-value=4.6 Score=36.62 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCCeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-----------------CHHHHhcCCCCEEEECCCCCC
Q 033201 23 NKNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 23 ~~~~I~vid~~~~~----~~~i~~~l~~~-g~~~~v~~~~~~-----------------~~~~~~~~~~dgiIi~GG~~~ 80 (125)
..++|+||-..... ...+.+||.+. |+++.+-+.... ...++. ..+|.+|..||-
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGD-- 753 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGD-- 753 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCc--
Confidence 34678999554322 13477888886 888765432100 001111 258999999993
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201 81 PQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
+.+....+.+ ...+|||||=+|.
T Consensus 754 ----GTlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 754 ----GVILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ----HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4455666665 5689999998874
No 212
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=86.21 E-value=1.4 Score=32.30 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=18.5
Q ss_pred HHHHHHhCCCCCEEEEchHHHHHHHHh
Q 033201 88 LQTVLELGPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGIC~G~QlLa~a~ 114 (125)
.+.+.+...+++++|+|.|.|-+.+.+
T Consensus 151 t~a~~r~~~~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 151 TEALSRYTPKIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp HHHHHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCHHHHHHHH
Confidence 455554445589999999999876654
No 213
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=86.17 E-value=3.2 Score=34.07 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=42.6
Q ss_pred CCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCCC
Q 033201 23 NKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPGA 80 (125)
Q Consensus 23 ~~~~I~vid~~----------------~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~~ 80 (125)
.++||.||.-+ +++...+...+++.|+++..+..-..+.+++ . ...+|.||++||. +
T Consensus 175 rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~-S 253 (404)
T COG0303 175 RKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV-S 253 (404)
T ss_pred cCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-c
Confidence 44688888432 2444568889999999776553211122222 1 1369999999994 5
Q ss_pred cCCchHHHHHHH
Q 033201 81 PQDSGISLQTVL 92 (125)
Q Consensus 81 ~~~~~~~~~~I~ 92 (125)
+.+.+...+.++
T Consensus 254 vG~~D~v~~~l~ 265 (404)
T COG0303 254 VGDADYVKAALE 265 (404)
T ss_pred CcchHhHHHHHH
Confidence 555555556666
No 214
>PRK00549 competence damage-inducible protein A; Provisional
Probab=85.89 E-value=6.2 Score=32.33 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=28.1
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
.....+.++|++.|+++.... .|+ .+++ . ..++|.||++||-+
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence 345568899999999876432 221 2222 1 24789999999955
No 215
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.88 E-value=3.8 Score=30.05 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.++....... +.+....+||||+.++
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35677788999998875421111 1122347999999654
No 216
>PRK15029 arginine decarboxylase; Provisional
Probab=85.69 E-value=4.4 Score=35.89 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=45.7
Q ss_pred CeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-----HHHHH
Q 033201 25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT 90 (125)
Q Consensus 25 ~~I~vid~~~~--------~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-----~~~~~ 90 (125)
|||++||-... ....+.+.|++.|+++............+.. ..+|.||+-=. -+...+ .+.+.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence 47999976442 2566888999999998766532111222333 36999988311 121111 34455
Q ss_pred HHHhCCCCCEEEEc
Q 033201 91 VLELGPTVPLFGVC 104 (125)
Q Consensus 91 I~~~~~~~PvLGIC 104 (125)
|++...++||+-+.
T Consensus 79 IR~~~~~iPIIlLT 92 (755)
T PRK15029 79 LHERQQNVPVFLLG 92 (755)
T ss_pred HHhhCCCCCEEEEE
Confidence 55534579998764
No 217
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=85.65 E-value=4 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=24.6
Q ss_pred chHHHHHHHHhCCCe---E--EEEeCCCCCH-HHHh---c-CCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYH---F--EVYRNDELTV-EELK---R-KNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~---~--~v~~~~~~~~-~~~~---~-~~~dgiIi~GG~~ 79 (125)
....+..+|++.|++ + .+++.+...+ +.+. . .++|.||.+||.+
T Consensus 24 ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 24 GIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred hHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 345688889998643 2 2333221111 1121 1 2699999999955
No 218
>PRK11914 diacylglycerol kinase; Reviewed
Probab=85.51 E-value=6.7 Score=30.31 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCeEEEEECCCC---c----hHHHHHHHHhCCCeEEEEeCCC-CCHHH----HhcCCCCEEEECCCCCC
Q 033201 24 KNPIIVIDNYDS---F----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGA 80 (125)
Q Consensus 24 ~~~I~vid~~~~---~----~~~i~~~l~~~g~~~~v~~~~~-~~~~~----~~~~~~dgiIi~GG~~~ 80 (125)
.+|+++|-|..+ - ...+.+.|++.|+++.++.... ....+ ....++|.||+.||-++
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 367777755332 1 1246678888999887665421 11111 22246899999999554
No 219
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=85.43 E-value=8.7 Score=30.44 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=35.4
Q ss_pred CCCCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH-------hcCCCCEEEECCCCC
Q 033201 22 NNKNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL-------KRKNPRGVLISPGPG 79 (125)
Q Consensus 22 ~~~~~I~vid~~---------~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~-------~~~~~dgiIi~GG~~ 79 (125)
...+|+.|+.-+ +++...+..+|++.|+++.....-..+.+.+ ....+|.||++||.+
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 456788888432 2334568889999999876443211122222 112489999999954
No 220
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=85.32 E-value=9.4 Score=28.09 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~-~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+.+++.|+++.+...+. .+. +.+...++||+|+.+...+ ...+.+..+ +.++|+..+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 21 YENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDV-----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChH-----HhHHHHHHHHHCCCeEEEE
Confidence 5567788999998764321 111 1122347999999654211 111233443 456887665
No 221
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=3.4 Score=31.51 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee
Q 033201 68 NPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~---~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v 118 (125)
.-..+|++||..-++-. +.....|..+ +++--.||||-|. +||+..
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ 98 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAY 98 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceE
Confidence 44588999997666532 2234556653 7788899999885 455544
No 222
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=85.05 E-value=7.8 Score=30.32 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCc
Q 033201 38 YNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~ 81 (125)
..+.+.|++.|.+..++..... ...+ +....+|.||..||-+++
T Consensus 23 ~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv 71 (301)
T COG1597 23 REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV 71 (301)
T ss_pred HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH
Confidence 3467788889999887765432 2222 223479999999996643
No 223
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=85.02 E-value=7.8 Score=27.40 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL 101 (125)
+.++|++++........+...|+..|+.+............+....+|.+++--.. +... -.....+++. ...|++
T Consensus 1 ~~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~-~~~~ii 77 (221)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINL--PGEDGLMLTRELRSR-STVGII 77 (221)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCCEE
Confidence 34689999876555666888888889877544321111122333468988874321 2122 1233444442 357877
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
.+.
T Consensus 78 ~l~ 80 (221)
T PRK10766 78 LVT 80 (221)
T ss_pred EEE
Confidence 663
No 224
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=84.68 E-value=5.4 Score=31.40 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECC
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP 76 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~G 76 (125)
..+.+|.++-. ...|.. .+.+..+++|+++.+..+.+.+. +++...++|||++++
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 46678888843 223322 35567788999997643222111 222345899999964
No 225
>CHL00148 orf27 Ycf27; Reviewed
Probab=84.39 E-value=9.2 Score=27.28 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
..++|++++........+...|+..|+.+............+....+|.+++--...+ .+.-...+.+++. ...|++.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~-~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPK-LDGYGVCQEIRKE-SDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhc-CCCcEEE
Confidence 3568999987656666788888888887654321111112223346888887432111 1111233444443 4688888
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
++-
T Consensus 83 ls~ 85 (240)
T CHL00148 83 LTA 85 (240)
T ss_pred EEC
Confidence 763
No 226
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.38 E-value=9.6 Score=27.93 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+.+++.|+.+.+...+ ..+.+ .+...++||+|+.+.. . ....+.++.+ ..++|+..+
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~--~---~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 21 AEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD--A---KALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC--h---hhhHHHHHHHHHCCCCEEEe
Confidence 556778899999887531 11211 1223479999997642 1 1112334433 345676654
No 227
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=84.26 E-value=6.9 Score=27.44 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=41.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|++++........+...|+..|+.+............+....+|.+++--. .+...+ .....+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 47899987655566788888888887654432111112223346888777322 111121 223444443345787766
No 228
>PRK13054 lipid kinase; Reviewed
Probab=84.21 E-value=17 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.038 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCC-CCHHH----HhcCCCCEEEECCCCCC
Q 033201 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGA 80 (125)
Q Consensus 23 ~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~-~~~~~----~~~~~~dgiIi~GG~~~ 80 (125)
+++++++|-|+.+- ...+.+.|++.|+++++..... ....+ ....++|.||+.||-++
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 45677777665431 2235667888998877654321 22222 22246899999999654
No 229
>PRK03670 competence damage-inducible protein A; Provisional
Probab=84.01 E-value=9.6 Score=29.22 Aligned_cols=45 Identities=29% Similarity=0.326 Sum_probs=27.6
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hh---cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEE----LK---RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~----~~---~~~~dgiIi~GG~~ 79 (125)
.....+.++|.+.|+++..+..-....++ +. ...+|.||++||-+
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 33456888999999987644311111222 21 12489999999965
No 230
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=83.73 E-value=4.6 Score=29.70 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHHHHHHhC---CC--eEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGEL---GY--HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~---g~--~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++. |+ ++.+.+.+... ...+...++||||+.+.. . ....+.+..+ +.++|++.+
T Consensus 20 ~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~--~---~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 20 EFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPAS--P---TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred HHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--h---hhhHHHHHHHHHCCCeEEEE
Confidence 355667778 88 44555432111 112223589999997641 1 1111233333 456777654
No 231
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.67 E-value=10 Score=31.65 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC---------HHHH----------hcCCCCEEEECCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---------VEEL----------KRKNPRGVLISPGP 78 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~---------~~~~----------~~~~~dgiIi~GG~ 78 (125)
.+++|+|+..+.+ .....++|.+.|+.+.+.+....+ .+.+ ...++|.+|++||-
T Consensus 6 ~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 6 QGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred cCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCC
Confidence 3789999988654 346889999999999887633211 0111 11248999999983
No 232
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=83.57 E-value=6 Score=30.85 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=42.2
Q ss_pred CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
.+.+|.++- ..+.|. ..+.+.+++.|+++.+...+.... ..+....+||+|+.+... ....+.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~-----~~~~~~ 98 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-----QVLSNV 98 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-----hhHHHH
Confidence 456777773 333343 335677788999998876532111 112235899999976421 111233
Q ss_pred HHHh-CCCCCEEEE
Q 033201 91 VLEL-GPTVPLFGV 103 (125)
Q Consensus 91 I~~~-~~~~PvLGI 103 (125)
++.+ ..++|++-+
T Consensus 99 l~~~~~~~iPvV~i 112 (330)
T PRK10355 99 IKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHCCCeEEEE
Confidence 4443 455777655
No 233
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.54 E-value=4.5 Score=29.86 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+... .+.+....+||||+.+.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3667778899998876543111 11222357999999653
No 234
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=83.34 E-value=6.2 Score=29.93 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCCeEEEEECCCCc------------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDNYDSF------------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~~~~~------------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
...++|.++.-++.. ...+.+.|++. +++..++.. .++++ .++|.+|| .||..+...... .
T Consensus 144 ~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---~~~IP-~~~d~Lvi-~~P~~~ls~~e~-~ 216 (271)
T PF09822_consen 144 DEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---NEEIP-DDADVLVI-AGPKTDLSEEEL-Y 216 (271)
T ss_pred ccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---ccccC-CCCCEEEE-ECCCCCCCHHHH-H
Confidence 456778888422222 23577888887 888776653 34553 48999998 555555554443 5
Q ss_pred HHHH-hCCCCCEE
Q 033201 90 TVLE-LGPTVPLF 101 (125)
Q Consensus 90 ~I~~-~~~~~PvL 101 (125)
.|.+ +.++.++|
T Consensus 217 ~l~~yl~~GG~ll 229 (271)
T PF09822_consen 217 ALDQYLMNGGKLL 229 (271)
T ss_pred HHHHHHHcCCeEE
Confidence 5555 44444443
No 235
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=82.94 E-value=2.1 Score=32.20 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=49.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh-CCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~-~~~~PvLG 102 (125)
++|++++-.......+..+|+..|+++............+... ||.||+==+ -|...+ .+...||+. ....||+-
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~--lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLM--LPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECC--CCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899998765666778899999999998876321112223334 999887221 232222 345666642 45677887
Q ss_pred EchH
Q 033201 103 VCMG 106 (125)
Q Consensus 103 IC~G 106 (125)
+.--
T Consensus 78 Lta~ 81 (229)
T COG0745 78 LTAR 81 (229)
T ss_pred EECC
Confidence 7643
No 236
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=82.93 E-value=2.5 Score=29.05 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=27.8
Q ss_pred CchHHHHHHHHhCCCeEEE---EeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEV---YRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v---~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+....+.++|++.|+++.. ++.+ .+++ . ..+.|.||.+||.+
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPDD---PDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEESS---HHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECCC---HHHHHHHHHhhhccCCEEEEcCCcC
Confidence 3455688999999998753 3432 2222 1 13679999999965
No 237
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=82.90 E-value=8.7 Score=27.26 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=43.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc-CCchHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~-~~~~~~~~~I~~~~~~~PvLGI 103 (125)
++|++++....+...+...|+..|+++............+....+|.+|+--..... .+.......++......|++-+
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~l 80 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFL 80 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 368888875555667888888888877644321111122233468988873321111 1112233444443345787766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 81 s 81 (227)
T TIGR03787 81 T 81 (227)
T ss_pred E
Confidence 3
No 238
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=82.87 E-value=7.8 Score=28.56 Aligned_cols=40 Identities=5% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
..+.+.+++.|+++.+...+.... ..+....+||||+.+.
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 346677888999998876532111 1122347999999764
No 239
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=82.79 E-value=6.2 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=38.2
Q ss_pred CEEEECCCCCCcCCc--hHH-HHHHHHh-CCCCCEEEEchH--------HHHHHHHhCCeeeeCCCC
Q 033201 70 RGVLISPGPGAPQDS--GIS-LQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGGESSKMSSS 124 (125)
Q Consensus 70 dgiIi~GG~~~~~~~--~~~-~~~I~~~-~~~~PvLGIC~G--------~QlLa~a~Gg~v~~~~~~ 124 (125)
-.|+|+-|..+.... ... .++.+++ +.+++++.|+.| ++-||.+.||+....+..
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~ 167 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDL 167 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcC
Confidence 367788885543211 122 4455555 678999999987 589999999999887654
No 240
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=82.67 E-value=4.9 Score=29.52 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHh-CCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGE-LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~-~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++ .|+++.+...+... .+.+....+||+|+.+... ....+.++++ ..++|++.+
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-----~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT-----AATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch-----hhhHHHHHHHHHCCCeEEEe
Confidence 36677788 89998876543111 1112234799999966421 1112334443 455676543
No 241
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=82.59 E-value=2.9 Score=28.75 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh---CCCCCEEEEc
Q 033201 34 DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GPTVPLFGVC 104 (125)
Q Consensus 34 ~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~---~~~~PvLGIC 104 (125)
.+.+..+.+++.+ ++.+...++......+.....+||.||+ |+|--.. -...+.+++++. -.++|+.-++
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~-gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~ 82 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIF-GSPIYAGRIPGEMREFIKKNKDNLKNKKVALFS 82 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEE-EEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3556566666544 3322333332211001122247999998 4433222 233355666542 2456654443
No 242
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.55 E-value=3 Score=28.51 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=43.7
Q ss_pred CeEEEEEC---CCCchHHHH----HHHHhCCCeEEEEeCCCCC--------------HHHH---h--cCCCCEEEECCCC
Q 033201 25 NPIIVIDN---YDSFTYNLC----QYMGELGYHFEVYRNDELT--------------VEEL---K--RKNPRGVLISPGP 78 (125)
Q Consensus 25 ~~I~vid~---~~~~~~~i~----~~l~~~g~~~~v~~~~~~~--------------~~~~---~--~~~~dgiIi~GG~ 78 (125)
|||++|.. .++.+..+. +.+++.|+++++++..+.. .+++ . -...|++|+ +.|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~-~sP 79 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF-ASP 79 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE-EEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE-eec
Confidence 68888853 235554444 4455579999999875420 0111 1 136899988 444
Q ss_pred CCcCC-chHH---HHHHH----HhCCCCCEEEEchH
Q 033201 79 GAPQD-SGIS---LQTVL----ELGPTVPLFGVCMG 106 (125)
Q Consensus 79 ~~~~~-~~~~---~~~I~----~~~~~~PvLGIC~G 106 (125)
--... ...+ .+.+. ..-.+||++.|+.|
T Consensus 80 ~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 80 VYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 31111 1222 33332 12368999999754
No 243
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.37 E-value=6.2 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.++...... ...+....+||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 20 GVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3556677789999877543111 11222358999998653
No 244
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=82.31 E-value=11 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=30.1
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+....+.+.|.+.|+++.-+..-..+.+++ . ..++|-||++||-+
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 445678899999999986554211123333 1 13699999999965
No 245
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=82.31 E-value=3.4 Score=20.58 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=27.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
+++++++........+.+.++..|+.+...+........+....+|.+++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 36777876544555677788878877554432111112222235777766
No 246
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=82.22 E-value=0.26 Score=27.43 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.7
Q ss_pred CEEEEchHHHHHHHHhC
Q 033201 99 PLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (125)
-..|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 46788999999987655
No 247
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=81.92 E-value=13 Score=27.09 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC-------HHHHhcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~-------~~~~~~~~~dgiIi~GG 77 (125)
..+.+.+++.|+.+.+...+... .+.+....+||+|+.+.
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34667788899999887643211 11122347999999764
No 248
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=81.77 E-value=11 Score=27.39 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.+.+.+++.|+++.+...+... .+.+....+||+|+.+...+ ....+.+. ..++|+..+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----~~~~~~~~--~~~ipvv~~ 84 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT----ERTRQLLR--AAGIPVVEI 84 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC----HHHHHHHH--hcCCCEEEE
Confidence 4566778899999887653211 11222357999999764321 12222222 346787765
No 249
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.66 E-value=6.1 Score=29.66 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++.|+++.+........ ..+...++||||+.+... ....+.++++ ..++|+..+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-----~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 20 NFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG-----EALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-----hhHHHHHHHHHHCCCCEEEE
Confidence 46667788999998886542111 112235899999976421 1122344443 456787655
No 250
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=81.36 E-value=7.9 Score=27.16 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv 100 (125)
.++|++++....+...+...|+..|+.+............+....+|.+++--.. +...+ ...+.+++. ....|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~--~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWML--PGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCC--CCCcHHHHHHHHHccccCCCCCE
Confidence 4689999876556667888888888876543221111122333468988873321 11111 233444432 246788
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-++
T Consensus 80 i~ls 83 (226)
T TIGR02154 80 IMLT 83 (226)
T ss_pred EEEe
Confidence 8775
No 251
>PRK13435 response regulator; Provisional
Probab=81.32 E-value=9.5 Score=25.33 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=45.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~-~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
.+.++|++++........+.+.+...|+.+...-.+.... ..+....+|.+|+--......+.-.....+++ ....|+
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~pi 81 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVEV 81 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCCE
Confidence 3467899998765556668888888887754222221111 11222358888883321100111112233333 246888
Q ss_pred EEEchHHH
Q 033201 101 FGVCMGLQ 108 (125)
Q Consensus 101 LGIC~G~Q 108 (125)
+-++--.+
T Consensus 82 i~ls~~~~ 89 (145)
T PRK13435 82 VFMTGNPE 89 (145)
T ss_pred EEEeCCHH
Confidence 88865444
No 252
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.19 E-value=12 Score=27.60 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+.+.+++.|+++.+...+....+ .+....+||+|+.+.. . ....+.++.+ ++++|++-+-
T Consensus 21 g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~---~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 21 GAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD--P---DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--h---HHhHHHHHHHHHCCCeEEEeC
Confidence 355677778999988765421211 1223479999997641 1 1122334443 4568887764
No 253
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=81.06 E-value=8.4 Score=28.08 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH---HH----HhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV---EE----LKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~---~~----~~~~~~dgiIi~GG 77 (125)
.+.+++++.|+++.+...+.... .+ +....+||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 20 GALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45677788999998876542211 11 22347999999765
No 254
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.80 E-value=8.4 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCC
Q 033201 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG 77 (125)
+.+.+++.|+++.++.....+.+ .+...++||||+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~ 65 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV 65 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 55677889999875422211221 122347999999653
No 255
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=80.48 E-value=17 Score=31.27 Aligned_cols=44 Identities=30% Similarity=0.250 Sum_probs=27.5
Q ss_pred chHHHHHHHHhCCCeEEEEeCCCCCHHHH----hc--CCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dgiIi~GG~~ 79 (125)
....+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+
T Consensus 214 n~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 214 NSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 34568888999999876443211122222 11 3699999999964
No 256
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.48 E-value=11 Score=24.78 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG 77 (125)
..+..+|++.|+++.....+ .+.+++ ...++|.|.+|..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 35778899999999655443 444443 3458999999876
No 257
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=80.33 E-value=13 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
..+..++...+.+..+.+.....+ .+.....+|.+++.||- +.+....+.+ ..++|++||=.|+
T Consensus 19 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGD------GtlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 19 KRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGD------GTLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred HHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCc------HHHHHHHHHhccCCCCEEEEeCCC
Confidence 346677777777776653211111 11122468888888873 3355666665 5669999999883
No 258
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=80.30 E-value=15 Score=25.72 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=42.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
++|++++........+.+.++..|+.+............+....+|.+++--.... .+.......++......|++-++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~lt 79 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLLLT 79 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEEEE
Confidence 47888987655566788888888877654332111111223346888887322111 11112334444434457887664
No 259
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=80.26 E-value=9.7 Score=34.28 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=49.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
...++|+|+|........+.+.|++.|+.+.....-....+.+....+|.|++--. .|...+ ...+.|++.....|+
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~~--mP~mdG~el~~~ir~~~~~~pI 876 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVN--MPNMDGYRLTQRLRQLGLTLPV 876 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 35578999986544456678889999998766542111122233346888876221 222222 345666765567899
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+++.-
T Consensus 877 I~lTa 881 (924)
T PRK10841 877 IGVTA 881 (924)
T ss_pred EEEEC
Confidence 98854
No 260
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.20 E-value=13 Score=30.30 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=35.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-------------cCCCCEEEECCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-------------RKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-------------~~~~dgiIi~GG~~ 79 (125)
+++|+|+..+.+-- ...++|.+.|+++...+.......++. ..++|.||.|+|-.
T Consensus 9 ~~~i~viG~G~~G~-~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 9 GKTVAVFGLGGSGL-ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred CCEEEEEeecHhHH-HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 46899999866543 468999999999887763211111110 02589999999853
No 261
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=80.08 E-value=9.9 Score=31.18 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
...+..+|++.|+++..+..-..+.+++ . ..++|.||.+||.+
T Consensus 206 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 206 RLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 3457788999998876543211122222 1 13699999999954
No 262
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=79.83 E-value=16 Score=26.06 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.7
Q ss_pred ECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201 31 DNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (125)
Q Consensus 31 d~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~ 105 (125)
....+.+..+.+.+.+ ++. .++++..+.. +.+ .+||.|++..+...-.-.....++|..+ ..++-+||.|-
T Consensus 5 sS~TGNTkkvA~aI~~~l~~-~~~~~~~~~~-~~~--~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G 77 (160)
T PF12641_consen 5 SSRTGNTKKVAEAIAEALGA-KDIVSVEEPP-EDL--EDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAG 77 (160)
T ss_pred ECCCChHHHHHHHHHHHCCC-ceeEeccccc-cCC--CCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecC
Confidence 4445667778888865 455 3445543221 112 4799999955533323344567888887 45667778773
No 263
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=79.75 E-value=8.4 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=26.1
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
...+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4457788888999998776532111 1122357999999753
No 264
>PRK13337 putative lipid kinase; Reviewed
Probab=79.64 E-value=26 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=33.5
Q ss_pred CeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCC-CCCHHHH----hcCCCCEEEECCCCCC
Q 033201 25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRND-ELTVEEL----KRKNPRGVLISPGPGA 80 (125)
Q Consensus 25 ~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~-~~~~~~~----~~~~~dgiIi~GG~~~ 80 (125)
+|+++|-|..+- ...+.+.|++.|++++++... .....++ ....+|.||+.||-++
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 69 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGT 69 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCH
Confidence 467777554321 113566788899987766432 1222222 2246899999999654
No 265
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=79.53 E-value=6.7 Score=29.10 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH------HHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.++..+ .... .+...++||||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 20 FAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 3567788899998877543 1111 122357999999763
No 266
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=79.52 E-value=21 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCeE---EEEeCCCCCH-HHHh---cCCCCEEEECCCCC
Q 033201 38 YNLCQYMGELGYHF---EVYRNDELTV-EELK---RKNPRGVLISPGPG 79 (125)
Q Consensus 38 ~~i~~~l~~~g~~~---~v~~~~~~~~-~~~~---~~~~dgiIi~GG~~ 79 (125)
..+.++|++.|+++ .+++.+.... ..+. ...+|.|+.+||.+
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG 78 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTG 78 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCcc
Confidence 45889999998876 3444321111 1111 11389999999977
No 267
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=79.51 E-value=9.5 Score=25.11 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=42.8
Q ss_pred eEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201 26 PIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 26 ~I~vid~~~~~~--~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL 101 (125)
||.++..+.++. ..+...+...|.....+............ ..-|.+|+..-++ ......+.++.+ +++.|++
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG---~t~~~~~~~~~a~~~g~~vi 78 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSG---ETDELLNLLPHLKRRGAPII 78 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCC---CCHHHHHHHHHHHHCCCeEE
Confidence 577777765542 34556667778777665322111111111 1235555543323 233455666665 6789999
Q ss_pred EEchH
Q 033201 102 GVCMG 106 (125)
Q Consensus 102 GIC~G 106 (125)
+|+-.
T Consensus 79 ~iT~~ 83 (128)
T cd05014 79 AITGN 83 (128)
T ss_pred EEeCC
Confidence 99974
No 268
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=79.47 E-value=11 Score=26.16 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=39.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
|+|++++........+.+.|+..|+++...-.+.. ....+....+|.+++--. .+... ......+++.....|++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 57899987655566788888888877642221111 112233346888877332 11111 123344444333456654
Q ss_pred E
Q 033201 103 V 103 (125)
Q Consensus 103 I 103 (125)
+
T Consensus 79 l 79 (204)
T PRK09958 79 V 79 (204)
T ss_pred E
Confidence 4
No 269
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=79.39 E-value=14 Score=26.01 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=42.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI 103 (125)
|+|++++....+...+...|+..|+.+............+....+|.+++--. .+... -.....+++. ...|++-+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~-~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIM--LPGMDGWQILQTLRTA-KQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEEE
Confidence 47899987655666788888888886654432111122233346898887332 11111 1233344432 35788776
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 78 s 78 (223)
T PRK11517 78 T 78 (223)
T ss_pred E
Confidence 4
No 270
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=79.16 E-value=10 Score=30.67 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=28.0
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~ 79 (125)
+....+..+|++.|+++..+..-..+.+.+ . ...+|.||.+||.+
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 334568888999999876553211122222 1 13599999999954
No 271
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=79.01 E-value=19 Score=25.54 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
..+|++++....+...+.+.|+..|+.+............+....+|.+++--.. +... -.....++. ....|++-
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~--~~~~g~~~~~~l~~-~~~~pii~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLML--PGTDGLTLCREIRR-FSDIPIVM 86 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCC--CCCCHHHHHHHHHh-cCCCCEEE
Confidence 3489999876556667888888888876543321111122333468888873321 1111 123344444 24578877
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
++-
T Consensus 87 l~~ 89 (240)
T PRK10710 87 VTA 89 (240)
T ss_pred EEc
Confidence 753
No 272
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=78.85 E-value=17 Score=26.43 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.++....... +.+....+||||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 46677788999998876432111 1122357999999875
No 273
>PRK06849 hypothetical protein; Provisional
Probab=78.45 E-value=18 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=35.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~ 78 (125)
+++|+|+|+.........+.+.|.+.|+++.++..+........ ...|..+..++|
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p 57 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFS-RAVDGFYTIPSP 57 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHH-HhhhheEEeCCC
Confidence 45688999976443456799999999999988865422222211 235665555554
No 274
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.34 E-value=17 Score=25.76 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=43.8
Q ss_pred CCCCeEEEEEC----CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh----cCCCCEEEECCCCCCcC-CchHHHHHHH
Q 033201 22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL 92 (125)
Q Consensus 22 ~~~~~I~vid~----~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dgiIi~GG~~~~~-~~~~~~~~I~ 92 (125)
+.++||++.-. ++--..-+.+.|+..|+++...... .+.+++- ..+.|.|.+|+=.+.-. ....+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 56778887732 2222345779999999999776554 3444431 35789999977533221 2233556666
Q ss_pred Hh
Q 033201 93 EL 94 (125)
Q Consensus 93 ~~ 94 (125)
+.
T Consensus 89 e~ 90 (143)
T COG2185 89 EA 90 (143)
T ss_pred Hh
Confidence 64
No 275
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=78.33 E-value=18 Score=24.50 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=42.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+.+|++++........+.+.|+..++.+............+....+|.+++--.. ...+.-.....+++.....|++-+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~-~~~~~~~~~~~l~~~~~~~~ii~l 81 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRM-PGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCCCCEEEE
Confidence 4678888875555566778888888876543211001112233457887773321 111112233445543456788776
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 82 ~ 82 (202)
T PRK09390 82 T 82 (202)
T ss_pred E
Confidence 4
No 276
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=78.24 E-value=14 Score=32.65 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
+.+.+|+++|........+.+.|...|+++..........+.+.. ..+|.|++ . ....+.......+++.....|
T Consensus 695 ~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~--~~~~~g~~l~~~l~~~~~~ip 771 (828)
T PRK13837 695 GRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-D--DRLLDEEQAAAALHAAAPTLP 771 (828)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-C--CCCCCHHHHHHHHHhhCCCCC
Confidence 456789999875555566788899999998766432111222221 13688887 2 111122234455555456689
Q ss_pred EEEEchH
Q 033201 100 LFGVCMG 106 (125)
Q Consensus 100 vLGIC~G 106 (125)
++-++-.
T Consensus 772 IIvls~~ 778 (828)
T PRK13837 772 IILGGNS 778 (828)
T ss_pred EEEEeCC
Confidence 8888753
No 277
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=78.15 E-value=11 Score=31.64 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL 101 (125)
+..+|++||-..+....+...|+..|+.+.....-..-..-+....+|.|++ .=. .|... ..+.+.+++...+.||+
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~-Di~-mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLL-DIR-MPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE-ecC-CCCCchHHHHHHHHhhCCCCCEE
Confidence 3457999987666667788999999998877653211122233334555554 432 22222 23455555555678887
Q ss_pred EE
Q 033201 102 GV 103 (125)
Q Consensus 102 GI 103 (125)
-|
T Consensus 81 ~~ 82 (464)
T COG2204 81 VM 82 (464)
T ss_pred EE
Confidence 55
No 278
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=78.14 E-value=25 Score=26.38 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCC----CCHHHHhcCCCCEEEECCCCC-CcCCchHHHHHHHHhCCCCCEEEEchHH
Q 033201 34 DSFTYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPG-APQDSGISLQTVLELGPTVPLFGVCMGL 107 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~~~~----~~~~~~~~~~~dgiIi~GG~~-~~~~~~~~~~~I~~~~~~~PvLGIC~G~ 107 (125)
++....+...|++.|+++++...++ .+.+.+ ..+|.||..+-.. +....+....+.+.+.++.=++|+=-|+
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L--~~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVL--AETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHH--hcCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCc
Confidence 3455678899999999998655432 122224 3799999843322 2223333334445567778788876554
No 279
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=77.91 E-value=9.5 Score=26.94 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=44.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc---h-HHHHHHHHhCCCCCEE
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~---~-~~~~~I~~~~~~~PvL 101 (125)
.++++|.+ +....+.++|.+.. .+.++.++-.-...+....---++++||..++... + ...+.++++.-++-++
T Consensus 21 ~~Ifld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 21 DTIFLDSG-TTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred CEEEEECc-hHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEe
Confidence 45778874 33456888887764 56666654212233332222246677886554322 2 2457777776677788
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
|+|
T Consensus 99 ~~~ 101 (161)
T PF00455_consen 99 GAD 101 (161)
T ss_pred ccc
Confidence 776
No 280
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=77.85 E-value=6.7 Score=33.49 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHh----c--CCCCEEEECCCCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPG 79 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dgiIi~GG~~ 79 (125)
...+..++++.|+++..+..-..+.+++. . .++|.||++||.+
T Consensus 208 s~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 208 LHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 34577889999998765432111233321 1 3699999999954
No 281
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=77.76 E-value=14 Score=26.84 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++.|+.+.+...+.... ..+...++||+|+.+... .. ..++.+ ..++|++.+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~~---~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH----SP---ALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC----CH---HHHHHHHhCCCCEEEE
Confidence 46677888999998865432111 112234699999876421 11 222333 456887765
No 282
>PRK09701 D-allose transporter subunit; Provisional
Probab=77.71 E-value=24 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCC-CCCH-------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~-~~~~-------~~~~~~~~dgiIi~GG 77 (125)
+...|.++ +..+.|.. .+.+.+++.|+++.++... .... +.+....+|||||.+.
T Consensus 23 ~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 23 AAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44467777 33334433 3556677789999876311 1111 1222347999999864
No 283
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=77.69 E-value=3.7 Score=31.43 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~ 107 (125)
++|.+|.-||- +.+....+.+ ..++|+|||=.|.
T Consensus 25 ~~Dlvi~iGGD------GTlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGD------GFMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCC------HHHHHHHHHhcCCCCeEEEEeCCC
Confidence 57999999993 4466777774 6789999998875
No 284
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=77.35 E-value=13 Score=32.51 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh----CCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GPT 97 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~----~~~ 97 (125)
.+++|+++|........+.+.|+..|+++..........+.+....+|.|++ .-. .|...+ ...+.+++. ...
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~-D~~-mp~~~G~~~~~~ir~~~~~~~~~ 766 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLM-DIR-MPGLDGLETTQLWRDDPNNLDPD 766 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEE-eCC-CCCCCHHHHHHHHHhchhhcCCC
Confidence 3568999987555556688899999998875532111122233346888776 221 222222 234555542 256
Q ss_pred CCEEEEch
Q 033201 98 VPLFGVCM 105 (125)
Q Consensus 98 ~PvLGIC~ 105 (125)
.|++.++-
T Consensus 767 ~pii~lt~ 774 (921)
T PRK15347 767 CMIVALTA 774 (921)
T ss_pred CcEEEEeC
Confidence 89998863
No 285
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=77.20 E-value=6 Score=27.72 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=43.9
Q ss_pred cCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-----CC-------HHHHhcCCCCEEEECCCCCCcCCchH
Q 033201 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-----LT-------VEELKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-----~~-------~~~~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
.....+++|++|.+ ...+.+.|++.+.++.+++.+. .. .+++. .++|.++++|+.- -.+.
T Consensus 6 ~~~~~~~~V~~VG~----f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l-~~aD~viiTGsTl---vN~T 77 (147)
T PF04016_consen 6 LEIGPGDKVGMVGY----FQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEIL-PWADVVIITGSTL---VNGT 77 (147)
T ss_dssp CCTTTTSEEEEES------HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHG-GG-SEEEEECHHC---CTTT
T ss_pred hhhcCCCEEEEEcC----cHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHH-ccCCEEEEEeeee---ecCC
Confidence 34567789999954 3347788888899999987652 11 11222 3799999999732 2233
Q ss_pred HHHHHHHhCCCCCE
Q 033201 87 SLQTVLELGPTVPL 100 (125)
Q Consensus 87 ~~~~I~~~~~~~Pv 100 (125)
+.++++...+.+++
T Consensus 78 i~~iL~~~~~~~~v 91 (147)
T PF04016_consen 78 IDDILELARNAREV 91 (147)
T ss_dssp HHHHHHHTTTSSEE
T ss_pred HHHHHHhCccCCeE
Confidence 44555554433443
No 286
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=76.76 E-value=19 Score=29.07 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=44.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
...+|++++........+.+.|+..|+.+............+....+|.+++--. . +...+ .....+++.....|++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~~-~-p~~~g~~ll~~i~~~~~~~pvI 80 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIR-M-PEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC-C-CCCCHHHHHHHHHhcCCCCCEE
Confidence 3457999987655566678888888988765432111112233346888776322 1 22222 2334444444567887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
.+.
T Consensus 81 ~lt 83 (457)
T PRK11361 81 LMT 83 (457)
T ss_pred EEe
Confidence 764
No 287
>PRK11173 two-component response regulator; Provisional
Probab=76.55 E-value=19 Score=25.87 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=42.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|++++........+...|+..|+.+............+....+|.+|+--. .+...+ ...+.+++ ....|++-+
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~-~~~~pii~l 80 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDIN--LPGKNGLLLARELRE-QANVALMFL 80 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCC--CCCCCHHHHHHHHhc-CCCCCEEEE
Confidence 57999987555566788889888987765432111112233346898887322 122221 22333443 245787766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 81 t 81 (237)
T PRK11173 81 T 81 (237)
T ss_pred E
Confidence 4
No 288
>PLN03029 type-a response regulator protein; Provisional
Probab=76.24 E-value=17 Score=26.84 Aligned_cols=34 Identities=6% Similarity=0.065 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~ 55 (125)
....+|+++|........+.+.|+..|+.+....
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~ 39 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVD 39 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHcCceEEEEC
Confidence 4557899998755555667788888898876543
No 289
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.19 E-value=17 Score=27.06 Aligned_cols=39 Identities=8% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 21 gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 21 GVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35577788899987765431111 1122358999999864
No 290
>PRK13558 bacterio-opsin activator; Provisional
Probab=75.95 E-value=15 Score=31.24 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=44.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.++|+++|........+.+.|...|+.+............+....+|.||+--. ....+.....+.++....++|++-+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~-lp~~~g~~~l~~l~~~~~~~piI~l 85 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHE-PDGFDGLALLEAVRQTTAVPPVVVV 85 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEecc-CCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 468999987666666677788878876654332111111122335888877322 1111222344555554556888777
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 86 t 86 (665)
T PRK13558 86 P 86 (665)
T ss_pred E
Confidence 4
No 291
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=75.95 E-value=23 Score=25.85 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=21.1
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
..+|.||+..- ..+ ...++|. .-++|+.|+|
T Consensus 126 ~~Pdlviv~~~----~~~---~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP----RKE---HQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC----ccc---hHHHHHHHHcCCCEEEEe
Confidence 36888888642 222 3566664 6679999998
No 292
>PRK13856 two-component response regulator VirG; Provisional
Probab=75.95 E-value=17 Score=26.35 Aligned_cols=77 Identities=12% Similarity=0.223 Sum_probs=43.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|++++........+...|+..|+.+............+....+|.+|+--. .+...+ .....+++ ....|++-+
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~l~~~i~~-~~~~pii~l 78 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLN--LGREDGLEIVRSLAT-KSDVPIIII 78 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCcEEEE
Confidence 47999987655566788888888888765432111111223346888887322 122222 22333443 245788777
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 t 79 (241)
T PRK13856 79 S 79 (241)
T ss_pred E
Confidence 5
No 293
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=75.91 E-value=23 Score=28.59 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-h-CCCCCEEEEchHHHHHH
Q 033201 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGVCMGLQCIG 111 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~-~~~~PvLGIC~G~QlLa 111 (125)
+.|...+.+++.+.|+.+.+...-.-.. +. +---.+...|-. .|.....+.+++ . .+++=..|+-+|.-+|+
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~-~~---n~~p~~yh~G~t--~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa 163 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSG-EA---NTSPRLYHSGET--EDIRFFLDWLKARFPPRPLYAVGFSLGGNMLA 163 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccC-Cc---ccCcceecccch--hHHHHHHHHHHHhCCCCceEEEEecccHHHHH
Confidence 3455668888899999988876532111 10 111233334311 222234455655 3 56677899999999999
Q ss_pred HHhCCe
Q 033201 112 EAFGGE 117 (125)
Q Consensus 112 ~a~Gg~ 117 (125)
..+|-+
T Consensus 164 ~ylgee 169 (345)
T COG0429 164 NYLGEE 169 (345)
T ss_pred HHHHhh
Confidence 999843
No 294
>PRK12359 flavodoxin FldB; Provisional
Probab=75.77 E-value=27 Score=25.15 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=31.8
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCC
Q 033201 25 NPIIVI-DNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~~~l~~-~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~ 79 (125)
|+++|+ -...+.+..+.+.+.+ .|.+ +++.+......+++. +||.||+ |.|-
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~--~yD~iIl-G~pT 55 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLME--QYDVLIL-GIPT 55 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHc--cCCEEEE-Eecc
Confidence 567666 3344567778877755 4543 566665444445554 7999888 5543
No 295
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=75.54 E-value=11 Score=27.80 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCeEEEEe-CCCCC------HHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYR-NDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~-~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+.. .+... .+.+...++||+|+.+.
T Consensus 19 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 19 GVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 35567788999998763 22111 11223358999999763
No 296
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.37 E-value=21 Score=25.96 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++.|+++.+...+.... +.+....+||+|+.+.. + .. ..++++ ..++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~--~--~~---~~~~~~~~~~ipvV~i 84 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPE--L--TS---AQRAALRRTGIPFVVV 84 (270)
T ss_pred HHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCC--C--Ch---HHHHHHhcCCCCEEEE
Confidence 45667788899998876542111 11223479999986542 1 11 123443 456777654
No 297
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=75.28 E-value=12 Score=27.47 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+.+++.|+++.++..+...... +...++||||+.+...+ . ..++++ ..++|+..+
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~----~---~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ----D---PLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC----h---HHHHHHHhCCCCEEEE
Confidence 667778899999887653221112 22347999999764321 1 224443 456777643
No 298
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=75.28 E-value=21 Score=25.63 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=42.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI 103 (125)
++|++++........+...|+..|+++............+....+|.+|+--. .+... -.....+++ ....|++-+
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~~~~~ir~-~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIM--LPGKDGMTICRDLRP-KWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 47899987655566788888888987765432111112223346888887322 12112 223344444 234677655
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 ~ 79 (240)
T PRK10701 79 T 79 (240)
T ss_pred E
Confidence 3
No 299
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=75.25 E-value=21 Score=28.67 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
..++|+++|........+.+.|+..|+.+............+....+|.+++--. ....+.-.....+++.....|++-
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~-m~~~~G~~~~~~ir~~~~~~~vi~ 82 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR-MAEMDGIATLKEIKALNPAIPVLI 82 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 3478999987666666788888888887755432111112233346888776322 111111223445555445678887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 83 lt 84 (441)
T PRK10365 83 MT 84 (441)
T ss_pred EE
Confidence 76
No 300
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=75.25 E-value=14 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~ 78 (125)
.+.+.+++.|+++.+....... .+.+....+||+|+.++.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 20 GIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4667778889999877543211 112333589999997753
No 301
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=75.09 E-value=20 Score=26.89 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
....|.++- ..+.|.. .+.+.+++.|+++.+........ +.+....+||+|+.+.
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345676662 2333332 35567788999998765421111 1122347999999653
No 302
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.00 E-value=28 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
..+.+.+++.|+++.+...+... .+.+....+||+|+.++
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 34667788899998877543211 11122347999999775
No 303
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=74.92 E-value=21 Score=25.88 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+++++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 20 GIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35577788899988776432111 1222357999999764
No 304
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=74.86 E-value=21 Score=25.16 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=41.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI 103 (125)
.+|++++........+...|+..|+.+............+....+|.+|+--.. +... ....+.+++ ....|++-+
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~-~~~~pvi~l 78 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL--PDGDGIEFIRDLRQ-WSAIPVIVL 78 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHc-CCCCCEEEE
Confidence 478999876555667888898888876543321111122233468888873321 1111 123344444 235787765
No 305
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=74.81 E-value=30 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=27.3
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHH----Hh---cCCCCEEEECCCCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEE----LK---RKNPRGVLISPGPG 79 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~----~~---~~~~dgiIi~GG~~ 79 (125)
...+..+|++.|+++..+..-..+.+. +. ..++|.||.+||.+
T Consensus 177 ~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg 226 (312)
T PRK03604 177 GKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTG 226 (312)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCC
Confidence 456889999999987654321111222 11 13689999999965
No 306
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=74.63 E-value=23 Score=26.88 Aligned_cols=74 Identities=9% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEe-CC--------CCCHHHH-------hcCCCCEEEECCCCCCcCCch
Q 033201 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYR-ND--------ELTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (125)
Q Consensus 23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~-~~--------~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~ 85 (125)
.-+||.++--|... ...+.++|++.|+++.-.. .+ ..+.+.+ ...+.|+|++++....
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLr----- 193 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALR----- 193 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCch-----
Confidence 34689999654433 4568899999999986552 11 0122222 1247899999875332
Q ss_pred HHHHHHHHh--CCCCCEEE
Q 033201 86 ISLQTVLEL--GPTVPLFG 102 (125)
Q Consensus 86 ~~~~~I~~~--~~~~PvLG 102 (125)
..++|.++ .-+|||+-
T Consensus 194 -t~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 194 -AATCAQRIEQAIGKPVVT 211 (239)
T ss_pred -hHHHHHHHHHHHCCCEEE
Confidence 23444443 24688874
No 307
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=74.58 E-value=20 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
+....|.++- ..+.|. ..+.+.+++.|+++.+...+.... +.+...++||+|+.+.
T Consensus 54 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 54 NQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445677663 222333 235567788999988765432111 1122357999999765
No 308
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=74.40 E-value=20 Score=28.64 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=37.2
Q ss_pred CCeEEEEECCCC-chHHHHHHHHhCCCeEEEEeCC-CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 24 ~~~I~vid~~~~-~~~~i~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
++|++|+--... +...+...|++.|.++.++... +.+.+.+ ...++|.||--|| +++.|..+
T Consensus 22 ~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK 92 (374)
T cd08183 22 GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGK 92 (374)
T ss_pred CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHH
Confidence 468887742222 3345677888889888776422 1122222 2357999997777 56666554
No 309
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=74.15 E-value=20 Score=30.42 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred ccCCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-------hHHHH
Q 033201 18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQ 89 (125)
Q Consensus 18 ~~~~~~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-------~~~~~ 89 (125)
.++.+..+||.|||....+. ..+.+.|.+.|+++..+..+. ..-+. .+.+-|++ |+. ..... +...-
T Consensus 379 A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--~syim-~evtkvfL-Gah-ailsNG~vysR~GTa~v 453 (556)
T KOG1467|consen 379 AKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--ASYIM-LEVTKVFL-GAH-AILSNGAVYSRVGTACV 453 (556)
T ss_pred HHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--HHHHH-Hhcceeee-chh-hhhcCcchhhhcchHHH
Confidence 46677889999999877664 568899999999987766542 22333 24555665 542 22222 22111
Q ss_pred HHHHhCCCCCEEEEchHH
Q 033201 90 TVLELGPTVPLFGVCMGL 107 (125)
Q Consensus 90 ~I~~~~~~~PvLGIC~G~ 107 (125)
.+-.-..++|||-.|--+
T Consensus 454 alvAna~nVPVlVCCE~y 471 (556)
T KOG1467|consen 454 ALVANAFNVPVLVCCEAY 471 (556)
T ss_pred HHHhcccCCCEEEEechh
Confidence 122225679999998543
No 310
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=74.10 E-value=11 Score=30.02 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred cCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC----------------------CCCHHHHhcCCCCEEEECC
Q 033201 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND----------------------ELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~----------------------~~~~~~~~~~~~dgiIi~G 76 (125)
.-++...||+|+|++ ..+-|.++|.++..+.+. +.+++.+....+|.||++|
T Consensus 53 ~vpknPekVvv~D~g------aLD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIigg 126 (320)
T COG4607 53 VVPKNPEKVVVLDLG------ALDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIGG 126 (320)
T ss_pred cccCCCceEEEecch------hhhhHHHhCCccccccCCCCccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEECc
Confidence 445778899999983 345666667665554111 1224445456899999955
Q ss_pred C
Q 033201 77 G 77 (125)
Q Consensus 77 G 77 (125)
-
T Consensus 127 R 127 (320)
T COG4607 127 R 127 (320)
T ss_pred H
Confidence 4
No 311
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=74.03 E-value=32 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=31.6
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
....|.++- ..+.|.. .+.+.+++.|+++.+........ +.+...++||||+.++
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445677663 2223332 35566777899988775431111 1222347999999875
No 312
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.01 E-value=10 Score=27.72 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.... +.+...++||||+.+.
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567777899998776542211 1122357999999763
No 313
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=73.98 E-value=21 Score=27.13 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
....|.++- ..+.|.. .+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345676662 2233433 35566777899998775432111 1122357999999764
No 314
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=73.93 E-value=12 Score=27.74 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeEEEEeCCC-CCH-------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~-~~~-------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+. ... +.+...++||||+.+.
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35567788999998875321 111 1122358999999753
No 315
>PRK09191 two-component response regulator; Provisional
Probab=73.83 E-value=23 Score=25.95 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
....+|++++....+...+...|+..|+.+.....+.. ....+....+|.+|+--...+..+.....+.++... ..|+
T Consensus 135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pi 213 (261)
T PRK09191 135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTF-DVPV 213 (261)
T ss_pred cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCE
Confidence 45568999987555556678888888877653322211 122233346898888432110011112233333323 6898
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 214 i~ls~ 218 (261)
T PRK09191 214 IFITA 218 (261)
T ss_pred EEEeC
Confidence 86643
No 316
>PRK15115 response regulator GlrR; Provisional
Probab=73.79 E-value=26 Score=28.29 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
+..+|+++|........+...++..|+.+............+....+|.+|+--. .+...+ .....+++.....|++
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~--lp~~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLR--MDEMDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence 4578999987666666788888888987654432111112233346888877332 111121 2234444434567888
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-++
T Consensus 82 vlt 84 (444)
T PRK15115 82 ILT 84 (444)
T ss_pred EEE
Confidence 775
No 317
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.74 E-value=26 Score=25.63 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=30.6
Q ss_pred HHHHHHHh--CCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGE--LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~--~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++ .|+.+.+...+... .+.+....+||+|+.+. +. ....+.++++ +.++|+.-+
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~--~~---~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 20 GAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV--DS---KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC--Ch---hHhHHHHHHHHHCCCeEEEe
Confidence 35577777 66666555432111 11122357999999653 11 1112334443 445776655
No 318
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=73.65 E-value=24 Score=28.74 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=44.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI 103 (125)
.+|+|++........+.+.|+..|+.+............+....+|.+|+--. . +... -...+.+++.....|++-+
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~-l-p~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIR-M-PGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCC-C-CCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999987666666788899988988754432111112233346887776322 1 2112 1233444443456788877
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
+
T Consensus 82 t 82 (469)
T PRK10923 82 T 82 (469)
T ss_pred E
Confidence 6
No 319
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=73.63 E-value=25 Score=25.59 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=35.2
Q ss_pred HHHHHHhCCCeEEEE-eCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVY-RNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~-~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+..++.|+++.++ +..... .+.+...++||||+.+.. +.. ....++++ ++++||..+
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~--~~~---~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVD--PDS---LAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSS--TTT---THHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCC--HHH---HHHHHHHHhhcCceEEEE
Confidence 556777889999985 543211 112223589999996642 212 23455554 567888775
No 320
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=73.54 E-value=17 Score=26.10 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+.+++++.|+++.+...+... ..++...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 21 AEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456677789999888654211 11222347999998664
No 321
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=73.18 E-value=13 Score=29.25 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~G 76 (125)
..+.+.+++.|+.+.+...+.... +.+....+||+|+.|
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 346677888999998886543111 112345899999988
No 322
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.02 E-value=27 Score=25.38 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.... ..+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 20 AMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46667788999998775431111 1122357999999653
No 323
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=72.99 E-value=14 Score=27.04 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=32.5
Q ss_pred HHHHHHHhC-CCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 39 NLCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 39 ~i~~~l~~~-g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+.+.+.+. |+++.+....... .+.+...++||||+.+.. +.... +.++++ ..++|+.-+.
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~--~~~~~---~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 20 EIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNE--AAPLT---PVVEEAYRAGIPVILLD 88 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCc--hhhch---HHHHHHHHCCCCEEEeC
Confidence 355666765 8998877543111 111223579999997642 21111 223332 4567776553
No 324
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.89 E-value=12 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=33.3
Q ss_pred HHHHHHHh--CCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGE--LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~--~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++ .|+++.+.+.+... .+.+....+||+|+.+.. + ....+.++++ ..++|+.-+
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~--~---~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD--P---TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc--h---hhHHHHHHHHHHCCCCEEEe
Confidence 35566777 67887776643211 122334589999997642 1 1122444443 456887654
No 325
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=72.73 E-value=9.5 Score=31.59 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHhCCCCCEEEEchHHHHHHHHh
Q 033201 89 QTVLELGPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 89 ~~I~~~~~~~PvLGIC~G~QlLa~a~ 114 (125)
..+.+.-.+..++|+|.|.+.+.+.+
T Consensus 151 ~~~~~~~~~~kviGlC~~~~~~~~~l 176 (437)
T cd05298 151 EALRRLFPNARILNICDMPIAIMDSM 176 (437)
T ss_pred HHHHHHCCCCCEEEECCcHHHHHHHH
Confidence 34443223578999999998765444
No 326
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=72.67 E-value=29 Score=27.86 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=36.2
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. ++...+...|++.|+++.+++-- +.+.+.+ ...++|.||--|| +++.|..+
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 6888873211 23456778888889988776421 1122222 2357999995566 45555544
No 327
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=72.47 E-value=34 Score=27.39 Aligned_cols=62 Identities=11% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 24 KNPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 24 ~~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
++|++||--.. ++...+.+.|++.|+++.++.- . +.+.+.+ ...++|.||=-|| +++.|..+
T Consensus 25 g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK 100 (380)
T cd08185 25 GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAK 100 (380)
T ss_pred CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 36888884222 2334577888888988876631 1 1122222 2357999995565 45656554
No 328
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=72.38 E-value=18 Score=29.45 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=39.6
Q ss_pred CeEEEE-ECC---CCchHHHHHHHHhCCCeEEEEeCCC--CCHH-------HHhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRNDE--LTVE-------ELKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vi-d~~---~~~~~~i~~~l~~~g~~~~v~~~~~--~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+ |-. .++...+.+.|.+.|+++.+++.-. .+.+ .+...++|.||-.|| +|+.|..+
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK 103 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAK 103 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 678877 321 2456678899999998887774211 1222 233468999998788 67766554
No 329
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=72.20 E-value=41 Score=28.12 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCCeEEEEECCCC---c-h----HHHHHHHHhCCCeEEEEeCCC-CCHHH----HhcCCCCEEEECCCCCCc
Q 033201 22 NNKNPIIVIDNYDS---F-T----YNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~---~-~----~~i~~~l~~~g~~~~v~~~~~-~~~~~----~~~~~~dgiIi~GG~~~~ 81 (125)
...+|++||-|..+ - . ..+...|++.|++++++.... ....+ +....||+||+.||-++.
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 45668888755321 1 1 124458888999887764321 11222 222469999999996654
No 330
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.98 E-value=39 Score=27.90 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH---HHH---------h---cCCCCEEEECCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV---EEL---------K---RKNPRGVLISPGP 78 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~---~~~---------~---~~~~dgiIi~GG~ 78 (125)
+++|+|+..+.+ -....++|.. |+++.+.+...... .++ . ..++|.||+|+|-
T Consensus 6 ~~~v~v~G~G~s-G~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI 73 (454)
T PRK01368 6 KQKIGVFGLGKT-GISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGI 73 (454)
T ss_pred CCEEEEEeecHH-HHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCC
Confidence 468999987543 2357788885 99988776321111 111 0 1258999999984
No 331
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.91 E-value=28 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISP 76 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~G 76 (125)
.+.+.+++.|+++.+...+... ...+...++||||+.+
T Consensus 20 gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 20 AADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3566777899999888654211 1112235799999965
No 332
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.68 E-value=13 Score=27.67 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCeEEEEeCCC--CCHHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~--~~~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+. .....+....+||+|+.+.
T Consensus 25 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 25 GVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 35567788899998876532 0112233457999999765
No 333
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=71.67 E-value=24 Score=22.77 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=39.8
Q ss_pred CCeEEEEECCCCch-----HHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHH-h-
Q 033201 24 KNPIIVIDNYDSFT-----YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-L- 94 (125)
Q Consensus 24 ~~~I~vid~~~~~~-----~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~- 94 (125)
.++|+++ ++.+.. ..+.+++++.|+++++.... ..++. ..++|.|++++- .....+.+++ +
T Consensus 3 ~~~ILl~-C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~---~~~~~~~~~~~Dvill~pq------i~~~~~~i~~~~~ 72 (95)
T TIGR00853 3 ETNILLL-CAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS---YGAAGEKLDDADVVLLAPQ------VAYMLPDLKKETD 72 (95)
T ss_pred ccEEEEE-CCCchhHHHHHHHHHHHHHHCCCcEEEEEec---HHHHHhhcCCCCEEEECch------HHHHHHHHHHHhh
Confidence 3577766 333332 33667778899998877643 33332 247898887542 1112344554 3
Q ss_pred CCCCCEEEE
Q 033201 95 GPTVPLFGV 103 (125)
Q Consensus 95 ~~~~PvLGI 103 (125)
..++|+.-|
T Consensus 73 ~~~ipv~~I 81 (95)
T TIGR00853 73 KKGIPVEVI 81 (95)
T ss_pred hcCCCEEEe
Confidence 346888755
No 334
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=71.58 E-value=43 Score=26.75 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=38.0
Q ss_pred CCeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchHH
Q 033201 24 KNPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 24 ~~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
.+|++|+--.. ++...+.+.|++.|+++.++.-- +.+.+.+ ...++|.||--|| +++.|..+.
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 36788773221 23356788888889988776421 1222222 2358999997777 566665543
No 335
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.35 E-value=18 Score=23.51 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG 77 (125)
..+..+|++.|+++..++.+ .+.+++ ...++|.|.+|..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDAN-VPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEcc
Confidence 35778999999999988765 333333 3458999999663
No 336
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=71.27 E-value=22 Score=26.86 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCH------HHHhcCCCCEEEECC
Q 033201 40 LCQYMGELGYHFEVY-RNDELTV------EELKRKNPRGVLISP 76 (125)
Q Consensus 40 i~~~l~~~g~~~~v~-~~~~~~~------~~~~~~~~dgiIi~G 76 (125)
+.+.+++.|+++.++ +.+.... +.+....+||||+.+
T Consensus 21 i~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 21 AKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 556677789998875 3321111 112234799999965
No 337
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=71.27 E-value=33 Score=24.12 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=39.3
Q ss_pred EEEE-ECCCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh----CCCC
Q 033201 27 IIVI-DNYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GPTV 98 (125)
Q Consensus 27 I~vi-d~~~~~~~~i~~~l~~-~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~----~~~~ 98 (125)
|+|+ ....+.+..+.+.+.+ .+ ..+++++....+..++. ++|.||+.-+.......+ .+.+++..+ -.++
T Consensus 2 i~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~--~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk 79 (167)
T TIGR01752 2 IGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLN--AYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGK 79 (167)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCHhHHh--hCCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCC
Confidence 4444 3334556677776654 22 33566665433344554 789988843322222222 344455442 2456
Q ss_pred CEEEEchH
Q 033201 99 PLFGVCMG 106 (125)
Q Consensus 99 PvLGIC~G 106 (125)
++.-++.|
T Consensus 80 ~v~~fg~g 87 (167)
T TIGR01752 80 TVALFGLG 87 (167)
T ss_pred EEEEEecC
Confidence 66655543
No 338
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=71.25 E-value=32 Score=32.80 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 12 SLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 12 ~~~~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
-|.-++.+...+++||+||..+..-. .-.+.|.+.|..++++
T Consensus 1773 gwm~p~pp~~rtg~~vaiigsgpagl-aaadqlnk~gh~v~vy 1814 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRTGKRVAIIGSGPAGL-AAADQLNKAGHTVTVY 1814 (2142)
T ss_pred cCCccCCcccccCcEEEEEccCchhh-hHHHHHhhcCcEEEEE
Confidence 36666777778999999997643221 2456777778777765
No 339
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=71.22 E-value=26 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-CHHH-----HhcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDEL-TVEE-----LKRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~-----~~~~~~dgiIi~GG 77 (125)
..+.+.+++.|+++.+...+.. ...+ +....+||||+.+.
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3466778889999988765421 1111 22346999999864
No 340
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.99 E-value=28 Score=28.30 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=34.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HHHHh-----------------cCCCCEEEECCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK-----------------RKNPRGVLISPGP 78 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~-----------------~~~~dgiIi~GG~ 78 (125)
+++|+|+..+. -.....+.|.+.|+.+.+.+..... ..++. ..++|.||.|+|-
T Consensus 5 ~~~~~v~G~g~-~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGG-TGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence 46888888753 2334688899999988777543211 11111 1268899998884
No 341
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=70.81 E-value=31 Score=24.89 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+........ +.+...++||||+.+.
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 20 GIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 35567778899987765432111 1122347999999765
No 342
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=70.73 E-value=24 Score=30.37 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=27.3
Q ss_pred chHHHHHHHHhCCCeEEEEeCCCCCHHHH----hc--CCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dgiIi~GG~~ 79 (125)
+...+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+
T Consensus 395 n~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 395 NRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred CHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 34568889999999875443111112222 11 3689999999954
No 343
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.67 E-value=19 Score=28.44 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=42.1
Q ss_pred CCeEEEEECCC---CchHHHHHHHHhCCCeEEE--EeCCCCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVIDNYD---SFTYNLCQYMGELGYHFEV--YRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid~~~---~~~~~i~~~l~~~g~~~~v--~~~~~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
++|++|+--.. .+...+.+.|++.|.++.. +..+ .+.+.+ ...++|.||-.|| +++.|..+....+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~~ 99 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGE-CTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVADY 99 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCc-CCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHHH
Confidence 47887774211 2233466778888877643 2222 222222 2347999998787 6666665543332
Q ss_pred HHhCCCCCEEEEc
Q 033201 92 LELGPTVPLFGVC 104 (125)
Q Consensus 92 ~~~~~~~PvLGIC 104 (125)
.++|++.|-
T Consensus 100 ----~~~P~iaIP 108 (351)
T cd08170 100 ----LGAPVVIVP 108 (351)
T ss_pred ----cCCCEEEeC
Confidence 247777665
No 344
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=70.37 E-value=19 Score=31.89 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCC--C-C
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGP--T-V 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~--~-~ 98 (125)
...+|+++|........+.+.|+..|+++.....-....+.+....||.|++--. .|...+ .....|++... . .
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvl~D~~--mp~~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDIN--LPDGDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHhCccccCCC
Confidence 3457999986555556678889999998876542111122333457898887322 232222 34556665322 2 8
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
|++.+.
T Consensus 779 pii~lt 784 (968)
T TIGR02956 779 KFIAFS 784 (968)
T ss_pred eEEEEE
Confidence 998884
No 345
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=70.20 E-value=26 Score=28.94 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=52.0
Q ss_pred cccccccccCC----CCCCeEEEE-----ECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc
Q 033201 11 KSLYLDDKKSK----NNKNPIIVI-----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 11 ~~~~~~~~~~~----~~~~~I~vi-----d~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~ 81 (125)
=.|+.+...+. ...+.|+++ ...++|...+...+.+.|+.+.++..-...-.++. ++--.+.
T Consensus 108 lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt---------Tpr~f~a 178 (409)
T KOG1838|consen 108 LDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT---------TPRLFTA 178 (409)
T ss_pred EeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC---------CCceeec
Confidence 35666666543 233444444 11223444566677788999888754211101111 1111122
Q ss_pred CCchHH---HHHHHH-h-CCCCCEEEEchHHHHHHHHhCC
Q 033201 82 QDSGIS---LQTVLE-L-GPTVPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 82 ~~~~~~---~~~I~~-~-~~~~PvLGIC~G~QlLa~a~Gg 116 (125)
.+.+++ .+.|++ + ++++=..|+-+|.-+|..++|=
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE 218 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGE 218 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhh
Confidence 233443 445554 4 4556677889999999999983
No 346
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=70.18 E-value=26 Score=23.34 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=22.9
Q ss_pred CeEEEEE---CCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 25 NPIIVID---NYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid---~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
++|+|+. ..+.+.+.+.++|.+.|+++..+.+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~ 36 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPK 36 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTT
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCC
Confidence 4688883 34566777889999999888777554
No 347
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=70.09 E-value=13 Score=23.51 Aligned_cols=68 Identities=10% Similarity=-0.113 Sum_probs=39.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
.++.-+|..........+..++.+.+++.+..+....+... ..+|.|+.+|+.....+......++++
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~-~~~D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD-GKFDLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS-SSEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC-CCeeEEEEcCCccCCCCHHHHHHHHHH
Confidence 68888898443344455555556667776665544444332 479999998874444454445555554
No 348
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=69.81 E-value=30 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
...|.++ +..+.|.. .+.+.+++.|+.+.+...+... .+.+....+||+|+.+.
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567666 33333433 3556677789999887653211 11122357999999764
No 349
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=69.72 E-value=29 Score=22.92 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=26.9
Q ss_pred CCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCC
Q 033201 34 DSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (125)
Q Consensus 34 ~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~ 78 (125)
.+.+..+. +.+++.|.++++.+..+....++. ++|.||+ |.|
T Consensus 9 tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iil-gsp 54 (140)
T TIGR01753 9 TGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLL-GCS 54 (140)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEE-EcC
Confidence 34455444 445557888988887654555554 6899988 443
No 350
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=69.60 E-value=15 Score=27.93 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-HH----HHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT-VE----ELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~-~~----~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+...+... .+ .+....+||+|+.+.
T Consensus 22 gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 4667778899999877643211 11 133468999999843
No 351
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=69.52 E-value=58 Score=26.23 Aligned_cols=56 Identities=9% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCeEEEE-ECCCCchHHHH----HHHH--hCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCC
Q 033201 23 NKNPIIVI-DNYDSFTYNLC----QYMG--ELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vi-d~~~~~~~~i~----~~l~--~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~ 79 (125)
..++|+|+ ....+.++.+. +.++ +.|.++++++..+...+++.. .++|+||+ |+|-
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~-GspT 310 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILV-GSST 310 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-ECCC
Confidence 34667766 33334454444 4455 467888888876555555431 36999998 5543
No 352
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=69.36 E-value=18 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.... +.+...++||+|+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 20 RLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45677788999988876532111 1223458999999775
No 353
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.36 E-value=44 Score=27.59 Aligned_cols=33 Identities=0% Similarity=-0.280 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.+++|+|+..+.+ -....++|.+.|+++.+.+.
T Consensus 7 ~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 7 EGRRVALWGWGRE-GRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred CCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcC
Confidence 3568999988543 34688999999999988764
No 354
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=69.15 E-value=7.9 Score=31.26 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=33.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+.+.|.+.|++..++.-+..+. +++ ..|.||-.||-++..-.. =+-.++.+||+||
T Consensus 80 ~~~~l~k~giesklv~R~~lsq-~i~--waD~VisvGGDGTfL~Aa-----srv~~~~~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVSRNDLSQ-PIR--WADMVISVGGDGTFLLAA-----SRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeeehhhccC-cCc--hhhEEEEecCccceeehh-----hhhhccCCceeee
Confidence 4455666788877665332222 233 689999889866432211 1113678999998
No 355
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=69.09 E-value=30 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+...+.... +++...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 20 GILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 35567778899988775431111 1222357999999764
No 356
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=69.01 E-value=49 Score=25.21 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
+....|.++- ..+.|.. .+.+.+++.|+.+.+........ +.+...++||||+.+.
T Consensus 62 ~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 62 GQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3445677663 2233332 35577788999887765431111 1122357999999875
No 357
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=68.94 E-value=24 Score=30.63 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhC--CC-C
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PT-V 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~--~~-~ 98 (125)
.+.+|+++|........+.+.|+..|+.+..........+.+....||.|++ .- ..|...+ ...+.|++.. .. .
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~Dlvl~-D~-~mp~~~G~e~~~~ir~~~~~~~~~ 601 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDEYDLVLL-DI-QLPDMTGLDIARELRERYPREDLP 601 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-cC-CCCCCCHHHHHHHHHhccccCCCC
Confidence 4578999987555556678889989988876542111122233346888876 22 1222222 2445555532 44 4
Q ss_pred CEEEEchH
Q 033201 99 PLFGVCMG 106 (125)
Q Consensus 99 PvLGIC~G 106 (125)
|++.++..
T Consensus 602 ~ii~~ta~ 609 (779)
T PRK11091 602 PLVALTAN 609 (779)
T ss_pred cEEEEECC
Confidence 88888753
No 358
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=68.74 E-value=36 Score=26.49 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=39.7
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCC-CC-------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDE-LT-------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~-~~-------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
.++|.++- ..+.|.. .+.+.+++.|+++.+..... .. .+.+...++||||+.+.. + ..+.+
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~--~---~~~~~ 120 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVT--P---DGLNP 120 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--h---HHhHH
Confidence 45777663 2233322 35567778899998875321 11 112223579999997532 1 11223
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.+ ++ +.++|+.-+
T Consensus 121 ~l-~~~~~giPvV~~ 134 (343)
T PRK10936 121 DL-ELQAANIPVIAL 134 (343)
T ss_pred HH-HHHHCCCCEEEe
Confidence 33 32 556887643
No 359
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=68.69 E-value=26 Score=26.71 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECC
Q 033201 23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISP 76 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~G 76 (125)
..+.|.++- ..+.|. ..+.+.+++.|+++.+...+... .+.+...++||+|+.+
T Consensus 62 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 345677663 222332 23566778889998776543111 1112235799999975
No 360
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=68.57 E-value=28 Score=22.33 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=29.3
Q ss_pred CeEEEEECCCCc-h-----HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECC
Q 033201 25 NPIIVIDNYDSF-T-----YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISP 76 (125)
Q Consensus 25 ~~I~vid~~~~~-~-----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~G 76 (125)
.||+++ ++.+. + ..+.+.+++.|+++++...+ ..++.. .++|.++.+.
T Consensus 3 ~kILvv-CgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~---~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVA-CGGAVATSTMAAEEIKELCQSHNIPVELIQCR---VNEIETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEE-CCCchhHHHHHHHHHHHHHHHCCCeEEEEEec---HHHHhhhcCCCCEEEECC
Confidence 366655 44444 2 33557888899998887643 334432 5789776543
No 361
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=68.55 E-value=29 Score=30.37 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=47.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~P 99 (125)
..++|+++|........+.+.|+..|+.+..........+.+....||.|++--. .|...+ ...+.|++. ..+.|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~~--mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQ--MPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCcHHHHHHHHHhcccCCCCC
Confidence 4578999987555556677888888988766542211122233346898877222 122222 345666653 35689
Q ss_pred EEEE
Q 033201 100 LFGV 103 (125)
Q Consensus 100 vLGI 103 (125)
++.+
T Consensus 744 ii~l 747 (919)
T PRK11107 744 IIAV 747 (919)
T ss_pred EEEE
Confidence 9887
No 362
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=68.51 E-value=46 Score=26.53 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=59.1
Q ss_pred CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----C--HH----HHhcCCCCEEEECCCCCCcCCchHHH
Q 033201 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----T--VE----ELKRKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-----~--~~----~~~~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
++-.++||+|--. . ....+.+.|++.|.++...|.-.. . .+ .+....||.||++.+.+ ...+.
T Consensus 7 ~pL~g~rIlvtr~-~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ng----v~~~~ 80 (381)
T PRK07239 7 APLAGFTVGVTAA-R-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIG----FRGWV 80 (381)
T ss_pred CCCCCcEEEEecc-C-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHH----HHHHH
Confidence 3446789887742 2 456789999999999887653211 1 11 11223699999977533 12222
Q ss_pred HH----------HHHhCCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201 89 QT----------VLELGPTVPLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 89 ~~----------I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
+. ++.+ .+.|++.|--+---..+.+|-++.-.
T Consensus 81 ~~l~~~~~~~~~~~~l-~~~~i~aVG~~Ta~aL~~~G~~~~~~ 122 (381)
T PRK07239 81 EAADGWGLADELLEAL-SSARLLARGPKATGAIRAAGLREEWS 122 (381)
T ss_pred HHHHHcCChHHHHHHH-cCCeEEEECccHHHHHHHcCCCCccC
Confidence 22 2222 46889999888887778888765543
No 363
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=67.99 E-value=20 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=20.2
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~ 105 (125)
.+|.+|+.. |.. ....+++. .-++|+.|||-
T Consensus 108 ~Pdlliv~d----p~~---~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 108 EPEVVVVTD----PRA---DHQALKEASEVGIPIVALCD 139 (196)
T ss_pred CCCEEEEEC----Ccc---ccHHHHHHHHcCCCEEEEee
Confidence 467777742 222 23567774 67899999994
No 364
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=67.72 E-value=49 Score=26.52 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 24 KNPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 24 ~~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
++|++|+--.. ++...+.+.|++.|+++.++.-- +.+.+. ....++|+||--|| +++.|..+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 103 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAK 103 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHH
Confidence 47888883211 22345778888889887766321 112222 22358999995566 45555544
No 365
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.58 E-value=31 Score=25.07 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+.+++.|+++.+....... ...+...++||+|+.+.. ... ..+.++++ ..++|+..+
T Consensus 22 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~~~---~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 22 FQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD--GQA---YIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC--ccc---cHHHHHHHHHCCCcEEEe
Confidence 556677799999887543111 111223579999996542 111 12333433 456776554
No 366
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=67.46 E-value=51 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=36.2
Q ss_pred CeEEEE-ECC---CCchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vi-d~~---~~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+ +.. .++...+...|++.|.++.++.-- +.+.+. +...++|.||--|| +++.|..+
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK 100 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAK 100 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 677777 321 123456778888889888766411 112222 22358999997777 56666554
No 367
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.43 E-value=39 Score=24.55 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+...+.... +.+....+||+|+.+.
T Consensus 20 gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 20 GMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567788899988776432111 1223357999999764
No 368
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.35 E-value=22 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcC--CCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRK--NPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~--~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+... .+.+... ++||||+.+.
T Consensus 21 gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 21 FMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3556777889998877543211 1122345 8999999764
No 369
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.31 E-value=42 Score=24.98 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
..+.+.+++.|+.+.+...+. ..+.+...++||+|+.+.
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-ADSPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEecC
Confidence 346678888999998876541 223344458999998653
No 370
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=67.03 E-value=37 Score=24.50 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+.+.+++.|+.+.+...+.... ..+....+||+|+.++. +. .. +.++.+ +.++|++.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~~-~~---~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVAD--AA-TS---PALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CC-ch---HHHHHHhhCCCCEEEEe
Confidence 35567788899998876431111 12223579999996642 21 11 233333 4568877664
No 371
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.99 E-value=70 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
+++||+|+..+.+- ..+.++|.+.|+++.+.+.
T Consensus 13 ~~~~i~v~G~G~sG-~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 13 KNKKVAVVGIGVSN-IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred cCCeEEEEcccHHH-HHHHHHHHHCCCEEEEECC
Confidence 45789999875432 3688899999999888764
No 372
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=66.99 E-value=26 Score=23.14 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=38.0
Q ss_pred CeEEEEECCCCch-----HHHHHHHHhCCCeEEEEeCCCCCHHHH-hcCCCCEEEECCCCCCcCCchHHHHHHHH-h-CC
Q 033201 25 NPIIVIDNYDSFT-----YNLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GP 96 (125)
Q Consensus 25 ~~I~vid~~~~~~-----~~i~~~l~~~g~~~~v~~~~~~~~~~~-~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~-~~ 96 (125)
+||+++ ++.+.+ ..+.+++++.|.++++........++. ...++|.|++++= .....+-+++ . ..
T Consensus 2 kkILlv-Cg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQ------i~~~~~~i~~~~~~~ 74 (104)
T PRK09590 2 KKALII-CAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQ------TKMYFKQFEEAGAKV 74 (104)
T ss_pred cEEEEE-CCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChH------HHHHHHHHHHHhhhc
Confidence 467666 333443 235567788999887765431112222 2236897777431 1112344454 2 45
Q ss_pred CCCEEEE
Q 033201 97 TVPLFGV 103 (125)
Q Consensus 97 ~~PvLGI 103 (125)
++|+.-|
T Consensus 75 ~ipv~~I 81 (104)
T PRK09590 75 GKPVVQI 81 (104)
T ss_pred CCCEEEe
Confidence 6888654
No 373
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=66.86 E-value=51 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred CCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 24 KNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 24 ~~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
.+|++||--.. ++...+.+.|++.|+++.++... +.+.+. +...++|.||=-|| +++.|..+
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AK 97 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAK 97 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 36888883221 23345778888889988776321 112222 22357999995566 45555544
No 374
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.80 E-value=42 Score=24.48 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+... .+.+....+||+|+.+.
T Consensus 20 gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 20 AVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4567778899999877543211 11223357999999764
No 375
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=66.26 E-value=39 Score=24.37 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
.+.+.+++.|+.+.+...+.... .++...++||+|+.+ .. .....+.++++ ..++|++.+
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~-~~----~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 20 GAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP-TD----SDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC-CC----hHHHHHHHHHHHHCCCcEEEE
Confidence 35567788899998775431111 112234799999953 21 11122344443 456787766
No 376
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=66.22 E-value=28 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+.+++++.|+++.+++..... ...+...++|++|+.+.
T Consensus 21 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 64 (264)
T cd01537 21 IEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS 64 (264)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 556677789988887654211 11122247899998654
No 377
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.95 E-value=42 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-H----HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~-~----~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.++..+... . +.+....+||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 20 ALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 3556778899998877654211 1 1122357999999754
No 378
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=65.89 E-value=50 Score=26.18 Aligned_cols=61 Identities=13% Similarity=0.296 Sum_probs=35.7
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeC-C-CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRN-D-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. .+...+.+.|++.|.++.++.- . +.+.+. +...++|.||--|| +++.|..+
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK 97 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAK 97 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 5888773221 2334678888888888876642 1 122222 22357999996566 45555544
No 379
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=65.88 E-value=18 Score=27.70 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=34.7
Q ss_pred EEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH--------------------HHHHHHHhCCeeeeC
Q 033201 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------------------LQCIGEAFGGESSKM 121 (125)
Q Consensus 71 giIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G--------------------~QlLa~a~Gg~v~~~ 121 (125)
-|+++.|..+.. .....+.++.+ ..+++|+.|.+| ++-||..-||+....
T Consensus 168 iIllTDG~~~~~-~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~ 238 (296)
T TIGR03436 168 LIVISDGGDNRS-RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV 238 (296)
T ss_pred EEEEecCCCcch-HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc
Confidence 567787744321 22344556554 578999999986 889999999997653
No 380
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=65.37 E-value=55 Score=24.43 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=36.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~---~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~P 99 (125)
+.+|+++..-......+.+..++.|.....-+.-.. +...-....+|.+|++. +.. -...|++. .-++|
T Consensus 67 ~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~d----p~~---~~~AI~EA~kl~IP 139 (204)
T PRK04020 67 PEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTD----PRG---DAQAVKEAIEVGIP 139 (204)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEEC----Ccc---cHHHHHHHHHhCCC
Confidence 456777754333333444555555554432221100 11100112577777743 222 24566664 66799
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
+.|||
T Consensus 140 ~Iaiv 144 (204)
T PRK04020 140 VVALC 144 (204)
T ss_pred EEEEE
Confidence 99999
No 381
>PLN02884 6-phosphofructokinase
Probab=65.12 E-value=8.8 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------chHHHHHHH
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI-------------C~G~QlLa~ 112 (125)
.++|++|+-||.++......+.+..++...++|+.|| |+|+.-.++
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~ 200 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE 200 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH
Confidence 4678877778755433222233333322334888888 888876544
No 382
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=65.10 E-value=44 Score=25.34 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
....|.++- ..+.|.. .+.+.+++.|+.+.+...+.... +.+....+||+|+.+.
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345676663 2233433 34566677899998775432111 1122357999999763
No 383
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=64.93 E-value=51 Score=23.96 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+.+.+...+.... +.+....+||||+.+.
T Consensus 20 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 20 GVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 35566778999998775431111 1222358999999764
No 384
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.89 E-value=43 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.++||+|+..+.+- ..+.++|.+.|+++.+.+.
T Consensus 14 ~~~~v~v~G~G~sG-~a~a~~L~~~G~~V~~~D~ 46 (473)
T PRK00141 14 LSGRVLVAGAGVSG-RGIAAMLSELGCDVVVADD 46 (473)
T ss_pred cCCeEEEEccCHHH-HHHHHHHHHCCCEEEEECC
Confidence 34578999875432 3688899999998777653
No 385
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=64.89 E-value=57 Score=26.32 Aligned_cols=61 Identities=15% Similarity=0.349 Sum_probs=35.9
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHH---H----HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVE---E----LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~~l~~~g~~~~v~~~~--~~~~~---~----~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++||--. .++...+.+.|++.|+++.+++-- +.+.+ + +...++|.||--|| +++.|..+
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 688877311 124556788899899888776421 11222 2 22357999995555 45555544
No 386
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=64.88 E-value=25 Score=25.03 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=31.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
+.+.+++.|+++.+.+.+... ...+....+|++|+.+...+. . . ++.+ ..++|+..+
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~-----~-~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 21 IEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDD-----E-L-LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcch-----H-H-HHHHHHcCCCEEEe
Confidence 555666788888877654211 111223479999987653211 1 1 4433 556777665
No 387
>PRK09526 lacI lac repressor; Reviewed
Probab=64.82 E-value=60 Score=24.71 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=30.3
Q ss_pred CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEEC
Q 033201 23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLIS 75 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~ 75 (125)
....|.++- ....+. ..+.+.+++.|+++.+...+.... +.+...++||+|+.
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 345677762 222232 335567778999998865432111 12223579999995
No 388
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=64.82 E-value=37 Score=27.31 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=35.8
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC--CCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~~--~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. ++...+.+.|++.|+++.++.-.. .+..+ ....++|.||--|| +++.|..+
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 96 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAK 96 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 6887774221 233457778888899887774211 12221 12357999996666 56666544
No 389
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=64.68 E-value=32 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=16.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGEL 47 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~ 47 (125)
|||+||..+ +-.+-+...|.+-
T Consensus 1 MkVLviGsG-gREHAia~~l~~s 22 (100)
T PF02844_consen 1 MKVLVIGSG-GREHAIAWKLSQS 22 (100)
T ss_dssp EEEEEEESS-HHHHHHHHHHTTC
T ss_pred CEEEEECCC-HHHHHHHHHHhcC
Confidence 789999875 4567788888663
No 390
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.64 E-value=42 Score=24.20 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+....... .+.+....+||+|+.+.
T Consensus 20 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 20 GLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3556677789988766432111 11122357999999764
No 391
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=64.56 E-value=30 Score=28.80 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~Pv 100 (125)
...+|+++|-.......+.+.|...|+.+............+....+|-|++.=. +...+.-.+...++.. ...+|+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~-mp~~dg~el~~~lr~~~~t~~ipi 209 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDAN-MPDMDGLELCTRLRQLERTRDIPI 209 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecC-CCccCHHHHHHHHhcccccccccE
Confidence 4578999976444456788999999988876643211122333347899887433 2222333345666653 468899
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+.+-
T Consensus 210 i~~~ 213 (435)
T COG3706 210 ILLS 213 (435)
T ss_pred EEEe
Confidence 9875
No 392
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=64.41 E-value=38 Score=22.31 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=34.5
Q ss_pred CeEEEEECCCCch-HH----HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 25 NPIIVIDNYDSFT-YN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 25 ~~I~vid~~~~~~-~~----i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
++|+++ +..+.. .. +....++.|.++++-........+ ...++|.|++++= .....+-+++...++|
T Consensus 4 kkIllv-C~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~-~~~~~DviLl~Pq------i~~~~~~i~~~~~~~p 75 (106)
T PRK10499 4 KHIYLF-CSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGE-KGQNADVVLLGPQ------IAYMLPEIQRLLPNKP 75 (106)
T ss_pred CEEEEE-CCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhc-cccCCCEEEECHH------HHHHHHHHHhhcCCCC
Confidence 467777 222332 22 334456788888775532111111 2247898887431 1112334444323468
Q ss_pred EEEE
Q 033201 100 LFGV 103 (125)
Q Consensus 100 vLGI 103 (125)
|..|
T Consensus 76 V~~I 79 (106)
T PRK10499 76 VEVI 79 (106)
T ss_pred EEEE
Confidence 7765
No 393
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=64.38 E-value=36 Score=23.62 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=39.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
|++++........+...|+..|+.+............+....+|.+++--.... .+.-.....+++.....|++-+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPG-MDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHccCCCCcEEEEE
Confidence 456766545556677888888886544332111122233346888887332111 11112334444333467877663
No 394
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=64.29 E-value=56 Score=26.23 Aligned_cols=61 Identities=18% Similarity=0.367 Sum_probs=35.2
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. ++...+...|++.|.++.++.-- +.+.+.+ ...++|.||--|| +++.|..+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 5777773211 23445778888899988776411 1122222 2358999995455 45555544
No 395
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=64.17 E-value=35 Score=24.78 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=54.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CH----HH-HhcCCCCEEEECCCCCCcCCchHHHHHHHH---
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TV----EE-LKRKNPRGVLISPGPGAPQDSGISLQTVLE--- 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~---~~----~~-~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--- 93 (125)
|+|++.-- ......+.+.|++.|+++..+|.... .. .. .....+|.||++... ....+.+.+++
T Consensus 2 ~~ilitr~-~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~----av~~~~~~~~~~~~ 76 (249)
T PRK05928 2 MKILVTRP-SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN----AVEFLLSALKKKKL 76 (249)
T ss_pred CEEEEeCC-HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH----HHHHHHHHHHhcCc
Confidence 56665532 33345688999999999877654211 11 11 122479999996542 22223333331
Q ss_pred -hCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201 94 -LGPTVPLFGVCMGLQCIGEAFGGESSK 120 (125)
Q Consensus 94 -~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (125)
.-.+.+++.|--.-.-..+.+|.++..
T Consensus 77 ~~~~~~~~~avG~~Ta~~l~~~G~~~~~ 104 (249)
T PRK05928 77 KWPKNKKYAAIGEKTALALKKLGGKVVF 104 (249)
T ss_pred CCCCCCEEEEECHHHHHHHHHcCCCccc
Confidence 134678888888877777888877653
No 396
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=64.12 E-value=43 Score=23.27 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=39.6
Q ss_pred CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-+-.+++|.|+.........+...|.+.|+.+.+.+....++++.- .+.|-||..=|
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v-~~ADIVvsAtg 80 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV-HDADVVVVGSP 80 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH-hhCCEEEEecC
Confidence 3456789999987655567788999999999988874433444432 36787775444
No 397
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.64 E-value=48 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH------HHhcCCCCEEEECC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISP 76 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dgiIi~G 76 (125)
.+.+.+++.|+.+.+...+..... .+....+||+|+.+
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 20 GIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 466777889999877654321111 12235799999965
No 398
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=63.31 E-value=24 Score=26.38 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=33.2
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+....|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+.
T Consensus 33 ~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 33 NESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 3445777662 2333432 3667778889999887653211 11223357999999764
No 399
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=62.97 E-value=46 Score=22.77 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=34.9
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
|.+.+-.+.++++|.+...++.+.....+ .+.+.++|+-..+.-.-.....+++...++ -+.||+
T Consensus 5 S~TGNte~fv~~lg~~~~~i~~~~~d~~~---~~~~~vliTyT~G~G~vP~~~~~Fle~~~n--~~~gV~ 69 (125)
T TIGR00333 5 SKTGNVQRFVEKLGFQHIRIPVDETDDIH---VDQEFVLITYTGGFGAVPKQTISFLNKKHN--LLRGVA 69 (125)
T ss_pred cccccHHHHHHHcCCCcEEeecCCcchhh---cCCCEEEEecCCCCCcCCHHHHHHHHhhhh--cEEEEE
Confidence 44556666688888876555543221112 267888885543331122335566665533 455654
No 400
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=62.77 E-value=40 Score=28.14 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=16.2
Q ss_pred CCHHHHhcCCCCEEEECCCCCCcC
Q 033201 59 LTVEELKRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 59 ~~~~~~~~~~~dgiIi~GG~~~~~ 82 (125)
.+.+++.. .||++++.+|...+.
T Consensus 200 it~~~L~~-e~Dav~l~~G~~~~~ 222 (457)
T COG0493 200 ITLEELLK-EYDAVFLATGAGKPR 222 (457)
T ss_pred CCHHHHHH-hhCEEEEeccccCCC
Confidence 45666653 679999999976553
No 401
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=62.48 E-value=54 Score=23.38 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=36.6
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
.-.+++++||....-....+...|.+.|+.+.+.+....+..+.- ...|-||..-|
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~-~~ADIVVsa~G 88 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT-RRADIVVSAVG 88 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH-TTSSEEEE-SS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee-eeccEEeeeec
Confidence 356789999987555566788899999999998876534455543 37888877555
No 402
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=62.43 E-value=35 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
.+++|+|+..+.-....+.++|.+.|+.+.+..-......+.. .++|.||.+=|
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l-~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT-KQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH-hhCCEEEEcCC
Confidence 5679999987432244588999999998776654322222222 37888876433
No 403
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=62.33 E-value=33 Score=28.27 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=43.0
Q ss_pred CeEEEEE----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 033201 25 NPIIVID----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (125)
Q Consensus 25 ~~I~vid----~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~P 99 (125)
.+++|+- ++..+..+++++|-. |+++.+++..+ ..+.+ +.-|..+-.|. ..+.+.|+.+..++-
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~--p~~vp--------~~~~~f~ldDYi~~l~~~i~~~G~~v~ 171 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVN--ARMVP--------LSAGKFDLEDYIDYLIEFIRFLGPDIH 171 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCC--CCCCc--------hhcCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 5788873 222224567778877 99988886431 11110 11121222221 124566666655689
Q ss_pred EEEEchHHHHHH
Q 033201 100 LFGVCMGLQCIG 111 (125)
Q Consensus 100 vLGIC~G~QlLa 111 (125)
++|+|.|.-+..
T Consensus 172 l~GvCqgG~~~l 183 (406)
T TIGR01849 172 VIAVCQPAVPVL 183 (406)
T ss_pred EEEEchhhHHHH
Confidence 999999988643
No 404
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=61.99 E-value=34 Score=31.22 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=44.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
..++|+++|........+.+.|+..|+++............+....+|.|++ .-. .|...+ .....+++.....|++
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~-D~~-mp~~~g~~~~~~i~~~~~~~pii 1034 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLIT-DVN-MPNMDGFELTRKLREQNSSLPIW 1034 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-eCC-CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999976544455677888888988765432111122233346888776 221 222222 2345555544567888
Q ss_pred EE
Q 033201 102 GV 103 (125)
Q Consensus 102 GI 103 (125)
.+
T Consensus 1035 ~l 1036 (1197)
T PRK09959 1035 GL 1036 (1197)
T ss_pred EE
Confidence 76
No 405
>PRK09483 response regulator; Provisional
Probab=61.99 E-value=48 Score=23.08 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=39.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
++|+++|........+.+.|+.. ++.+.....+.. ....+....+|.+|+--. ....+.....+.+++...+.|++-
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~-~~~~~g~~~~~~l~~~~~~~~ii~ 80 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMN-MPGIGGLEATRKILRYTPDVKIIM 80 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHCCCCeEEE
Confidence 57888987555556677888764 666542222211 111223346888777322 111111123344444444577766
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ls 82 (217)
T PRK09483 81 LT 82 (217)
T ss_pred Ee
Confidence 64
No 406
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.90 E-value=39 Score=26.27 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=43.6
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCC--CeEEEEeCCC---CCHHHH-------hcC----CCCEEEECCCCCCcCCc
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELG--YHFEVYRNDE---LTVEEL-------KRK----NPRGVLISPGPGAPQDS 84 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g--~~~~v~~~~~---~~~~~~-------~~~----~~dgiIi~GG~~~~~~~ 84 (125)
.-.++|+||-...+- .+.+.+-+++.+ +++.++|..- ....++ ... .+|.|||.=|-|+..|-
T Consensus 12 ~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 12 KFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred CCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 566799999765443 345666676644 5566666431 122222 212 48998885554554432
Q ss_pred hHH--HHHHHHh-CCCCCEE
Q 033201 85 GIS--LQTVLEL-GPTVPLF 101 (125)
Q Consensus 85 ~~~--~~~I~~~-~~~~PvL 101 (125)
..+ ..+.+.+ ...+||+
T Consensus 92 ~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 92 WAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred cccChHHHHHHHHhCCCCEE
Confidence 211 2344443 5568876
No 407
>PRK04148 hypothetical protein; Provisional
Probab=61.60 E-value=25 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE 58 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~ 58 (125)
.+++|+.|..+ +...+...|.+.|+++..++.+.
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCH
Confidence 44789999874 44457888999999999888763
No 408
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=61.58 E-value=60 Score=25.77 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=44.7
Q ss_pred CeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-------hHHHHHHHHhCC
Q 033201 25 NPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQTVLELGP 96 (125)
Q Consensus 25 ~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-------~~~~~~I~~~~~ 96 (125)
.+|.|.+....+. ....+.|++.|++++++.... ..-+. .++|.+++ |. .+...+ +...-.+..-+.
T Consensus 146 ~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa--~~~~~-~~vd~Viv-Ga-d~I~~nG~lvnkiGT~~lA~~A~e~ 220 (301)
T COG1184 146 FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA--VGAFM-SRVDKVLV-GA-DAILANGALVNKIGTSPLALAAREL 220 (301)
T ss_pred eEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH--HHHHH-HhCCEEEE-Cc-cceecCCcEEeccchHHHHHHHHHh
Confidence 4677776655554 457899999999998886431 12222 36888887 54 223222 221111222256
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
++|++-.|-
T Consensus 221 ~~Pf~v~ae 229 (301)
T COG1184 221 RVPFYVVAE 229 (301)
T ss_pred CCCEEEEee
Confidence 799998874
No 409
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=61.31 E-value=83 Score=25.85 Aligned_cols=32 Identities=3% Similarity=-0.052 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~ 55 (125)
++|||+++..+ +..+.+...|++.|.++...+
T Consensus 1 ~~~kVLvlG~G-~re~al~~~l~~~g~~v~~~~ 32 (435)
T PRK06395 1 MTMKVMLVGSG-GREDAIARAIKRSGAILFSVI 32 (435)
T ss_pred CceEEEEECCc-HHHHHHHHHHHhCCCeEEEEE
Confidence 46899998763 335678878888887555443
No 410
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=61.09 E-value=13 Score=27.77 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=30.5
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEchHHHHHHH
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~PvLGIC~G~QlLa~ 112 (125)
+.|.|.++=||++.+-..--....+- +..++|++|||- ..+++.
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss-L~~~A~ 103 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS-LEALAQ 103 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH-HHHHHH
Confidence 68999999999987644322233333 367899999996 555554
No 411
>PRK09581 pleD response regulator PleD; Reviewed
Probab=61.08 E-value=49 Score=26.03 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=41.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvLG 102 (125)
++|++++........+.+.|...++.+............+....+|.+|+--. ....+.....+.+++. ...+|++.
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~-~~~~~g~~l~~~i~~~~~~~~~~ii~ 81 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVM-MPGMDGFEVCRRLKSDPATTHIPVVM 81 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCC-CCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 47999987555556677888878877765432111112223346888877322 1111222234455442 23578776
Q ss_pred E
Q 033201 103 V 103 (125)
Q Consensus 103 I 103 (125)
+
T Consensus 82 ~ 82 (457)
T PRK09581 82 V 82 (457)
T ss_pred E
Confidence 6
No 412
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=61.08 E-value=11 Score=32.35 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEchHHHHHHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvLGIC~G~QlLa~ 112 (125)
.+++++|.+.|+++.+++.-.-+.++ ...++|-.| - + .....+.+++. ..++-++|.|.|--+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-r~~~ldDYv-~-~------i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-REWGLSTYV-D-A------LKEAVDAVRAITGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-cCCCHHHHH-H-H------HHHHHHHHHHhcCCCCeeEEEECcchHHHHH
Confidence 57889999999998888743211111 100111111 0 0 11234555554 466789999999998886
No 413
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.92 E-value=48 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=23.1
Q ss_pred HHHHHHHHh-CCCeEEEEeCCC-CCHHHHhcCCCCEEEECC
Q 033201 38 YNLCQYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 76 (125)
Q Consensus 38 ~~i~~~l~~-~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~G 76 (125)
..+.+.+++ .|+.+.+...+. ...+.+...++||+|+.+
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred HHHHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 346677787 678876654321 112223345799999964
No 414
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.92 E-value=51 Score=22.58 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=27.5
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~ 78 (125)
..-+...|+..|+++.-...+ .+.+++ ...++|.|.+|+-.
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 344668889999998766544 344443 23589999997753
No 415
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=60.70 E-value=56 Score=22.97 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=40.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|++++........+...|+..|+.+............+. ..+|.+++--. .+...+ ...+.+++.. ..|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~d~vl~d~~--~~~~~g~~~~~~l~~~~-~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVM--MPKKNGIDTLKELRQTH-QTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cCCCEEEEeCC--CCCCcHHHHHHHHHhcC-CCcEEEE
Confidence 47899987655566788888888887654321101111222 36888877322 111121 2334444422 2777776
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 78 t 78 (232)
T PRK10955 78 T 78 (232)
T ss_pred E
Confidence 4
No 416
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=60.31 E-value=42 Score=24.24 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCC-C----HHHH-hcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDEL-T----VEEL-KRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~-~----~~~~-~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.. . ..++ ....+||+|+.+.
T Consensus 24 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 24 GLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred HHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 466777889999888764321 1 1112 2246999999765
No 417
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=60.24 E-value=7.3 Score=31.08 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=22.4
Q ss_pred hcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 65 KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 65 ~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
...+.|++|+-||.++......+.+..++-..++|+.||
T Consensus 89 ~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 89 KKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe
Confidence 345789988889865443333333433332345777776
No 418
>PRK14072 6-phosphofructokinase; Provisional
Probab=60.13 E-value=7.7 Score=31.91 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=20.2
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 66 ~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
..++|++|+-||.++......+.+.+++...++|+.||
T Consensus 101 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 101 AHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred HcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 35678888878855433333333333333334677764
No 419
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=60.07 E-value=38 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=20.7
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
+++++||+|++. ++.++|..+|+.+.=+
T Consensus 46 ~k~PKRVVVLE~------SFaDaLaal~v~PVGI 73 (310)
T COG4594 46 PKTPKRVVVLEL------SFADALAALGVTPVGI 73 (310)
T ss_pred CCCCceEEEEEe------cHHHHHHHcCCeeeee
Confidence 468889999976 4667777777776654
No 420
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=59.75 E-value=34 Score=27.23 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=41.8
Q ss_pred CeEEEEECCCC---chHHHHHHHHhCCCeEEEEeCC-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~---~~~~i~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
+|++||--... +...+.+.|++.|.++...... +.+.+.+ ...++|.||--|| +++.|..+.....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~-- 106 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVADY-- 106 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHHHH--
Confidence 68877742111 2234566777778766332221 1222221 2347899997677 5666655443322
Q ss_pred hCCCCCEEEEch
Q 033201 94 LGPTVPLFGVCM 105 (125)
Q Consensus 94 ~~~~~PvLGIC~ 105 (125)
.++|+..|.-
T Consensus 107 --~~~p~i~IPT 116 (366)
T PRK09423 107 --LGVPVVIVPT 116 (366)
T ss_pred --cCCCEEEeCC
Confidence 3588888876
No 421
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=59.70 E-value=50 Score=23.68 Aligned_cols=86 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred ccccCCCCCCeEEEEE--CCCCchHHH----HHHHHhCCC---eEEEEeCC---CCC--HHHH-hcCCCCEEEECCCC--
Q 033201 16 DDKKSKNNKNPIIVID--NYDSFTYNL----CQYMGELGY---HFEVYRND---ELT--VEEL-KRKNPRGVLISPGP-- 78 (125)
Q Consensus 16 ~~~~~~~~~~~I~vid--~~~~~~~~i----~~~l~~~g~---~~~v~~~~---~~~--~~~~-~~~~~dgiIi~GG~-- 78 (125)
|+..+...+.||+||. +.+..+..+ .+.|++.|. ++++++.- +.+ ...+ ...+||++|..|--
T Consensus 2 ~~~~~~~~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIr 81 (158)
T PRK12419 2 NSSPRFATPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVD 81 (158)
T ss_pred CCCCCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEc
Confidence 3334444567999994 333333333 345667784 35555432 111 1112 12469999877752
Q ss_pred CCcCCchH----HHHHHHH--hCCCCCEE
Q 033201 79 GAPQDSGI----SLQTVLE--LGPTVPLF 101 (125)
Q Consensus 79 ~~~~~~~~----~~~~I~~--~~~~~PvL 101 (125)
+.....+. ..+-|.+ ++.++||.
T Consensus 82 GeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 82 GGIYRHEFVAQAVIDGLMRVQLDTEVPVF 110 (158)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 11112221 2333444 47789964
No 422
>PTZ00445 p36-lilke protein; Provisional
Probab=59.35 E-value=51 Score=24.97 Aligned_cols=64 Identities=14% Similarity=-0.003 Sum_probs=45.0
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC---------CchHHHHHHHHh-CCCCCEEEEchH
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ---------DSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~---------~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
...+.+.|++.|+.+...+.|. ++-.. -|||..++. -.+.+..|+.++ +.++||.=+=+.
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~Dn-TlI~~---------HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDL-TMITK---------HSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchh-hhhhh---------hcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3458899999999999888763 22111 367766664 223456788876 789999988888
Q ss_pred HHHH
Q 033201 107 LQCI 110 (125)
Q Consensus 107 ~QlL 110 (125)
-|..
T Consensus 101 d~~~ 104 (219)
T PTZ00445 101 DKEL 104 (219)
T ss_pred chhh
Confidence 7754
No 423
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=59.18 E-value=33 Score=25.82 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=31.9
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHH-H------HhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDE-LTVE-E------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~-~~~~-~------~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+.+.+++.|+.+.+...+. ...+ + +...++||||+.+.. ... ..+.+..+..++|+.-+
T Consensus 21 i~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~--~~~---~~~~l~~~~~~iPvV~~ 87 (295)
T TIGR02955 21 MVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS--PEA---LNHDLAQLTKSIPVFAL 87 (295)
T ss_pred HHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--hhh---hhHHHHHHhcCCCEEEE
Confidence 5566777899998875431 1111 1 223589999997532 111 11223333346887544
No 424
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=59.13 E-value=10 Score=31.24 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=23.9
Q ss_pred HhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 64 ~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+...++|++|+-||.++......+.+.+++..-++|+.||
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3446899999999966543333333333333235777776
No 425
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=59.02 E-value=1.1e+02 Score=25.65 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCeEEEE-ECCCCchHH----HHHHHHhC--CCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCC
Q 033201 24 KNPIIVI-DNYDSFTYN----LCQYMGEL--GYHFEVYRNDELTVEELKR--KNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vi-d~~~~~~~~----i~~~l~~~--g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~ 79 (125)
.++|+|+ ....++++. +.+.+++. |.++++++.+..+.+++.. .++|+|++ |+|-
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-GspT 314 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSST 314 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECCc
Confidence 4566666 333344544 44555655 5677888776555666542 26899988 6654
No 426
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=58.97 E-value=58 Score=26.62 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhC--CCeEEEEeCCC---CCHHHH-------hcCCCCEEEECCCCCCcCCchHH-
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGEL--GYHFEVYRNDE---LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS- 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~--g~~~~v~~~~~---~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~- 87 (125)
.-.+||+||-...+- .+.+.+-+.+. ++++.++|..- ....++ ....+|.|||.=|-|+..|--.+
T Consensus 133 ~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn 212 (438)
T PRK00286 133 FFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFN 212 (438)
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccC
Confidence 567899999765443 34566666554 45677776431 112222 22237998885444554332111
Q ss_pred -HHHHHHh-CCCCCEE
Q 033201 88 -LQTVLEL-GPTVPLF 101 (125)
Q Consensus 88 -~~~I~~~-~~~~PvL 101 (125)
..+.+.+ ...+||+
T Consensus 213 ~e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 213 DEAVARAIAASRIPVI 228 (438)
T ss_pred cHHHHHHHHcCCCCEE
Confidence 2344443 5568976
No 427
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=58.58 E-value=69 Score=25.61 Aligned_cols=61 Identities=15% Similarity=0.370 Sum_probs=35.4
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeC-C-CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRN-D-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. ++...+.+.|++.|.++.++.- . +.+.+. ....++|.||=-|| +++.|..+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK 102 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAK 102 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHH
Confidence 5888873211 2344577888888988877642 1 112222 22357999995565 45555444
No 428
>PRK13557 histidine kinase; Provisional
Probab=58.53 E-value=63 Score=26.02 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=44.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
.+++|++++........+.+.|+..|+++............+... .+|.+++--......+.-.....+++.....|++
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 456899998765556678888888898876543211111223222 4888877322110012222345555544457776
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 494 ~~~ 496 (540)
T PRK13557 494 LTT 496 (540)
T ss_pred EEc
Confidence 653
No 429
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=58.43 E-value=85 Score=25.43 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=36.7
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
++++|+.-. .++...+.+.|++.|+++.++.. . +.+.+.+ ...++|.||=-|| +++.|..+
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~AK 123 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDAAK 123 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 566766211 13345688899999998877631 1 1122222 2358999997777 56655544
No 430
>PRK00861 putative lipid kinase; Reviewed
Probab=58.22 E-value=83 Score=24.12 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCC-CCHHHH----hcCCCCEEEECCCCCC
Q 033201 24 KNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGA 80 (125)
Q Consensus 24 ~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~-~~~~~~----~~~~~dgiIi~GG~~~ 80 (125)
.+++++|-|..+- ...+.+.|++ +.+++++.... ....++ ....+|.||+.||-++
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHH
Confidence 3577777553321 1235556665 35665544321 122222 2246899999999543
No 431
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.03 E-value=23 Score=28.37 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=44.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+|+|....-...+...|.+.|..+..+.......+.+....+|.+++ -= -.|+..+ ++.+-++.+...+|+.-|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifl-dI-~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFL-DI-VMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEE-Ee-ecCCccHHHHHHHHHHhhccCcEEEE
Confidence 57889987555456677888888843333322112334444457898876 11 0122332 234555556667888877
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
-
T Consensus 79 s 79 (361)
T COG3947 79 S 79 (361)
T ss_pred e
Confidence 5
No 432
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=57.98 E-value=89 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=26.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHh--------------cCCCCEEEECCCC
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------------RKNPRGVLISPGP 78 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~--------------~~~~dgiIi~GG~ 78 (125)
|+++.-+.+--..+.++|.+.|+++...+.... ..+.+. -.++|.||+|+|-
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi 68 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAI 68 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCC
Confidence 455554433333356666666666655542110 001110 1258999999884
No 433
>PRK09492 treR trehalose repressor; Provisional
Probab=57.33 E-value=34 Score=25.80 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCCeEEEEE--CCCCc----hHHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSF----TYNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~----~~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+....|.++- ..+.| ...+.+.+++.|+.+.+...+... ...+...++||+|+.+.
T Consensus 60 ~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 60 QSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445677762 22222 234667788899998776543111 11122357999999763
No 434
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=57.18 E-value=39 Score=27.77 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=34.3
Q ss_pred eEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCC
Q 033201 26 PIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (125)
Q Consensus 26 ~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~ 78 (125)
+|.++ +.--+++.. +.+-|.+.|.+++++........++.. .+++|+++ |+|
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsP 306 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSP 306 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecC
Confidence 67777 323345544 445567789999999876445556532 37899998 665
No 435
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=57.02 E-value=86 Score=23.94 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=61.0
Q ss_pred cccccCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC------CHHH-Hhc-CCCCEEEECCCCCCcCCchH
Q 033201 15 LDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL------TVEE-LKR-KNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 15 ~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~------~~~~-~~~-~~~dgiIi~GG~~~~~~~~~ 86 (125)
|+...++-.+++|+|--- ......+.+.|++.|.++...|.-.. ...+ +.. .+||.||++.. +....
T Consensus 9 ~~~~~~~l~g~~IlvTRp-~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~----NAV~~ 83 (266)
T PRK08811 9 MTGAATADAAWTLISLRP-SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSP----AAVRA 83 (266)
T ss_pred CCCCCcCCCCCEEEEeCC-HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECH----HHHHH
Confidence 444455567789877643 23456788999999999887764111 1111 211 37999998653 22222
Q ss_pred HHHHHHH-hCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201 87 SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSK 120 (125)
Q Consensus 87 ~~~~I~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (125)
+..++.. ...++|++.|--+-.-..+.+|.....
T Consensus 84 ~~~~~~~~~~~~~~~~AVG~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 84 AHRLLPLQRPARAHWLSVGEGTARALQACGIDEVV 118 (266)
T ss_pred HHHHhcccCccCCeEEEECHHHHHHHHHcCCCcee
Confidence 2222211 135688999988888888888876544
No 436
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=56.91 E-value=1e+02 Score=27.41 Aligned_cols=54 Identities=22% Similarity=0.028 Sum_probs=35.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHh--------------cCCCCEEEECCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------------RKNPRGVLISPGP 78 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~--------------~~~~dgiIi~GG~ 78 (125)
++|+|+..+.+-...+.++|.+.|+++...+.... ...++. ..++|.||+|+|-
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI 73 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSI 73 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCc
Confidence 46899988765555578999999999987764311 111121 0157889998883
No 437
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=56.85 E-value=73 Score=23.11 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCeEEEEECCCC---c-hHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcC-CchHHHHHHHHh
Q 033201 24 KNPIIVIDNYDS---F-TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ-DSGISLQTVLEL 94 (125)
Q Consensus 24 ~~~I~vid~~~~---~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~ 94 (125)
..+|++--..+. . ...+...|+..|+++.-.-.+ .+.+++ ...++|.|-+|-...... ......+.+++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~-~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD-VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 457665532211 1 244668889999998655443 455554 235899998877532211 112234455553
Q ss_pred CC--CCCE--EEEchHHHHHHHHhCCeee
Q 033201 95 GP--TVPL--FGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 95 ~~--~~Pv--LGIC~G~QlLa~a~Gg~v~ 119 (125)
.. ++|| -|-.+- +.+++.+|+...
T Consensus 161 ~~~~~~~i~vGG~~~~-~~~~~~~GaD~~ 188 (201)
T cd02070 161 GLRDKVKVMVGGAPVN-QEFADEIGADGY 188 (201)
T ss_pred CCCcCCeEEEECCcCC-HHHHHHcCCcEE
Confidence 22 4443 233332 346777776543
No 438
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=56.77 E-value=1e+02 Score=24.73 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=35.7
Q ss_pred CeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCCC--CCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~~--~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. +....+.+.|++.|.++.++.-.+ .+.+. +...++|.||--|| +++.|..+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 6888773221 123457788888898887764111 12222 22357899995566 46666554
No 439
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=56.73 E-value=69 Score=22.79 Aligned_cols=81 Identities=7% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHhCCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLELGPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~~~~~P 99 (125)
.++|+++|........+.+.|+..+....+...+.. ..+.+....+|.+++--...+- .+.-...+.+++.....|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 368999987655566788888776542112222111 1112223468888873221110 011123344444344577
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 83 iIvls 87 (216)
T PRK10840 83 IIVLT 87 (216)
T ss_pred EEEEE
Confidence 77765
No 440
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=56.57 E-value=75 Score=27.82 Aligned_cols=43 Identities=16% Similarity=-0.062 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHH----h---cCCCCEEEECCCCC
Q 033201 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----K---RKNPRGVLISPGPG 79 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~---~~~~dgiIi~GG~~ 79 (125)
...+..+|++.|+++..+..-..+.+.+ . ..++|.||++||.+
T Consensus 211 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 211 RAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 3468888999999876543211122222 1 12689999999954
No 441
>PRK12361 hypothetical protein; Provisional
Probab=56.38 E-value=95 Score=26.17 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=32.0
Q ss_pred CCCCeEEEEECCCCc---h----HHHHHHHHhCCCeEEEEeCCC-CCHHHH----hcCCCCEEEECCCCCCc
Q 033201 22 NNKNPIIVIDNYDSF---T----YNLCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGAP 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~~---~----~~i~~~l~~~g~~~~v~~~~~-~~~~~~----~~~~~dgiIi~GG~~~~ 81 (125)
...+++.+|-|..+- . +.+.+.|++. ++++++.... ....++ ...++|.||+.||-++.
T Consensus 240 ~~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl 310 (547)
T PRK12361 240 NIHKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTV 310 (547)
T ss_pred ccCCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 345677777553321 1 2355566654 6666554321 222222 22468999999996543
No 442
>PRK13059 putative lipid kinase; Reviewed
Probab=56.13 E-value=91 Score=23.97 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=33.0
Q ss_pred CeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH---HhcCCCCEEEECCCCCCc
Q 033201 25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE---LKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 25 ~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~---~~~~~~dgiIi~GG~~~~ 81 (125)
+|+++|-|..+- ...+.+.|++.|+++.++..... ..+. .....+|.||+.||-++.
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 466676543211 12366788889998776544311 1111 112468999999996643
No 443
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=55.99 E-value=12 Score=31.38 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=27.4
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------chHHHHHHH
Q 033201 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (125)
Q Consensus 66 ~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI-------------C~G~QlLa~ 112 (125)
..++|.+++-||.++......+.+.+++...++|+.|| |+|++...+
T Consensus 174 ~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 174 RHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Confidence 35788888888865443333344444433345777775 777765543
No 444
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=55.79 E-value=85 Score=24.21 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+|.||++. |..+ ...|++. .-++|+.|+|
T Consensus 118 ~P~llIV~D----p~~d---~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 118 EPRLLIVTD----PRTD---HQAIREASYVNIPVIALC 148 (249)
T ss_pred CCCEEEEeC----CCcc---hHHHHHHHHhCCCEEEEe
Confidence 466666643 2222 3566664 5679999999
No 445
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.34 E-value=90 Score=25.91 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~ 55 (125)
.+++|+|+..+.+ -....++|...|+++.+.+
T Consensus 11 ~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 11 PGAPVLVAGAGVT-GRAVLAALTRFGARPTVCD 42 (488)
T ss_pred CCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEc
Confidence 4568888876543 2345578888998887765
No 446
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=55.29 E-value=1.1e+02 Score=24.64 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=35.4
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--. .+....+.+.|++.|+++.++.-- +.+.+.+ ...++|.||=-|| +++-|..+
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK 105 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAK 105 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHH
Confidence 688877321 123446788888889887665321 1122222 2358999995555 45555544
No 447
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=55.27 E-value=19 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=25.2
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHH
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~ 107 (125)
.+.|-|++.||-++ ..+....+..++|+|||-.|-
T Consensus 99 ~gVdlIvfaGGDGT------arDVa~av~~~vPvLGipaGv 133 (355)
T COG3199 99 RGVDLIVFAGGDGT------ARDVAEAVGADVPVLGIPAGV 133 (355)
T ss_pred cCceEEEEeCCCcc------HHHHHhhccCCCceEeecccc
Confidence 36889999998554 334444457789999998774
No 448
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=55.15 E-value=39 Score=22.92 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=35.7
Q ss_pred CEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH-------HHHHHHHhCCeeeeCCC
Q 033201 70 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG-------LQCIGEAFGGESSKMSS 123 (125)
Q Consensus 70 dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G-------~QlLa~a~Gg~v~~~~~ 123 (125)
..|+++-|. ..+.....+.+++. ..++++..|-+| ++-|+.+-||+......
T Consensus 102 ~iillTDG~--~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~~~~~~ 161 (171)
T cd01461 102 QIILLTDGE--VTNESQILKNVREALSGRIRLFTFGIGSDVNTYLLERLAREGRGIARRIYE 161 (171)
T ss_pred EEEEEeCCC--CCCHHHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHcCCCeEEEecC
Confidence 356678875 22333345666654 458999999888 78889999998876554
No 449
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=55.15 E-value=60 Score=28.60 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=44.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
.+++|+++|........+...|+..|+.+..........+.+.. ..||.|++-=. .|...+ ...+.+++.....|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~--mp~~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFD--LPDYDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCE
Confidence 45689999875555556778888899888754321111122222 35788877221 222222 234455554456787
Q ss_pred EEE
Q 033201 101 FGV 103 (125)
Q Consensus 101 LGI 103 (125)
+.+
T Consensus 758 i~~ 760 (914)
T PRK11466 758 IGF 760 (914)
T ss_pred EEE
Confidence 765
No 450
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=55.03 E-value=1.1e+02 Score=24.38 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=36.9
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeC-C-CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRN-D-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--... ....+.+.|++.|.++.++.- . +.+.+. ....++|.||--|| +++.|..+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 68888832222 234577888888988877641 1 122222 23357999997777 56655544
No 451
>PRK07116 flavodoxin; Provisional
Probab=54.87 E-value=69 Score=22.22 Aligned_cols=36 Identities=6% Similarity=-0.221 Sum_probs=21.0
Q ss_pred CCCEEEECCCCCCcCCc-hHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQDS-GISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~-~~~~~~I~~~-~~~~PvLGIC 104 (125)
++|.||| |.|--.... .....+|++. -.++|++-+|
T Consensus 76 ~~D~Iii-g~Pv~~~~~p~~v~~fl~~~~l~~k~v~~f~ 113 (160)
T PRK07116 76 EYDVIFL-GFPIWWYVAPRIINTFLESYDFSGKTVIPFA 113 (160)
T ss_pred hCCEEEE-ECChhccccHHHHHHHHHhcCCCCCEEEEEE
Confidence 6899888 655432222 2356777774 3456766553
No 452
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.84 E-value=57 Score=23.61 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCC--CHHHH----hcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDEL--TVEEL----KRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~--~~~~~----~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.. ..+.+ ....+||||+.+.
T Consensus 25 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 25 GISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 456777889999877654321 11122 2235999999754
No 453
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=54.83 E-value=1e+02 Score=25.05 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=36.2
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. +....+.+.|++.|+++.++.- . +.+.+.+ ...++|.||--|| +++.|..+
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~AK 97 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTAK 97 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 6888873221 1235577888888988877631 1 1122222 2357999997777 56655543
No 454
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.47 E-value=1.1e+02 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
+++|+|+..+.+-. .+.++|.+.|+++...+.
T Consensus 7 ~~~i~v~G~G~sG~-s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESGL-AMARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhHH-HHHHHHHHCCCEEEEEcC
Confidence 45899998865443 488999999999887764
No 455
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=54.44 E-value=89 Score=23.36 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=60.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C---HHH-Hhc-CCCCEEEECCCCCCcCCchHHHHHHHHhC--
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T---VEE-LKR-KNPRGVLISPGPGAPQDSGISLQTVLELG-- 95 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~---~~~-~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~~-- 95 (125)
+|+|+|.-.. .....+...++..|.++..+|.-.. + .+. +.. ..+|.|+++... ....+.+.+....
T Consensus 1 ~~~vlvtR~~-~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~----av~~~~~~l~~~~~~ 75 (248)
T COG1587 1 GMRVLVTRPR-EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPN----AVRFFFEALKEQGLD 75 (248)
T ss_pred CcEEEEeCch-hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHH----HHHHHHHHHHhhccc
Confidence 4677777443 3456788999999998887765321 1 222 221 247999986542 1222333333322
Q ss_pred --CCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 96 --PTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 96 --~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
.+++++.|.-.-.-..+.+|.++...+.
T Consensus 76 ~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~ 105 (248)
T COG1587 76 ALKNKKIAAVGEKTAEALRKLGIKVDFIPE 105 (248)
T ss_pred ccccCeEEEEcHHHHHHHHHhCCCCCcCCC
Confidence 3589999999999999999988776654
No 456
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=54.36 E-value=96 Score=23.68 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred CeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEE
Q 033201 25 NPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi 74 (125)
|||+|+=-+.|- ...+.+.|++.|++++.+..+......+.. .++|.++.
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 578888322221 134778899999999888654221222211 35787654
No 457
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.32 E-value=13 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.+.|++|+-||.++......+.+..++...++||.||
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 4788888888855433333333333333345677665
No 458
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=54.28 E-value=42 Score=25.81 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=32.0
Q ss_pred CCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
....|.++ +..+.|.. .+.+.+++.|+.+.+....... .+.+....+||+|+.+.
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34567766 33334433 3556778889998776543111 11223357999999864
No 459
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=54.11 E-value=66 Score=25.56 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=34.6
Q ss_pred CeEEEEECCCC-chHHHHHHHHhCCCeEEEEeCCC--CCHH---HH----hcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDE--LTVE---EL----KRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~~-~~~~i~~~l~~~g~~~~v~~~~~--~~~~---~~----~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++||--... +...+.+.|++.|.++.++.--+ .+.+ ++ ...++|.||--|| +++.|..+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK 94 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAK 94 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHH
Confidence 57887732222 23457788888888776653211 1222 22 2347999995566 45555544
No 460
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=53.94 E-value=44 Score=26.38 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
++|++||--...+ ...+.+.|++.|.++.++.. . +.+.+.+ ...++|.||--|| +++.|..+.....
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~ 100 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVLADK 100 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 3788877432222 23466777778887764431 1 1122222 2347999996666 5666655432222
Q ss_pred HHhCCCCCEEEEch
Q 033201 92 LELGPTVPLFGVCM 105 (125)
Q Consensus 92 ~~~~~~~PvLGIC~ 105 (125)
.++|+..|.-
T Consensus 101 ----~~~p~i~VPT 110 (345)
T cd08171 101 ----LGKPVFTFPT 110 (345)
T ss_pred ----cCCCEEEecC
Confidence 1578877764
No 461
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=53.83 E-value=20 Score=26.13 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=31.4
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEchHHHHHHHHh
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvLGIC~G~QlLa~a~ 114 (125)
+.|+|.++=||++.+-..--....+-+ ..++|++||.. +++||...
T Consensus 54 ~i~~iav~~GPGSfTGlRig~~~akgla~~~~~p~~~vss-L~~lA~~~ 101 (202)
T TIGR03725 54 DLDAIAVGVGPGSFTGLRIGLATAKGLALALGIPLVGVSS-LEALAAQA 101 (202)
T ss_pred HCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecCH-HHHHHhhC
Confidence 578999999999865433222333332 46799999997 77777653
No 462
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.76 E-value=34 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.... +.+....+||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 20 AVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45677788899998775432111 1123347999999774
No 463
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=53.51 E-value=1e+02 Score=23.69 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=31.1
Q ss_pred CCeEEEEECCCCch--------HHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLI 74 (125)
Q Consensus 24 ~~~I~vid~~~~~~--------~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi 74 (125)
++||+|+--+.+-. ..+.+.|++.|++++.+..+.. ....+...++|.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 56888884433221 2477899999999887764321 123343446886554
No 464
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=53.19 E-value=13 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=19.3
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.+.|++|+-||.++......+.+..++...+++|.||
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGI 196 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGV 196 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4678888888855432222222222222334677765
No 465
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=53.12 E-value=80 Score=22.84 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH------HHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+..... .+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 20 AVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 355667778999877654311111 122347999999765
No 466
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=53.05 E-value=47 Score=24.07 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...... ..+.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 20 GINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 355667778999887654211 112233357999998753
No 467
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=52.68 E-value=1.1e+02 Score=24.02 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHH---H----HhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 24 KNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVE---E----LKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 24 ~~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~--~~~~~---~----~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
.+|++|+--.. ++...+.+.|++. .++.++... +.+.+ + ....++|.||--|| +++.|..+....
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa~a~ 99 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKAIIY 99 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHHHHH
Confidence 36888774211 2334566778766 666555311 11232 2 12357999995566 466666554333
Q ss_pred HHH---hCCCCCEEEE
Q 033201 91 VLE---LGPTVPLFGV 103 (125)
Q Consensus 91 I~~---~~~~~PvLGI 103 (125)
+.. ..+.+|++.|
T Consensus 100 ~~~~~~~~~~~p~i~V 115 (332)
T cd08180 100 FAKKLGKKKKPLFIAI 115 (332)
T ss_pred HHhCCCCCCCCCEEEe
Confidence 322 1345787765
No 468
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=52.25 E-value=47 Score=24.36 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~G 76 (125)
.+.+.+++.|+.+.+...+. .... ....+||+|+.+
T Consensus 25 gi~~~~~~~g~~~~~~~~~~-~~~~-~~~~vdgii~~~ 60 (270)
T cd01544 25 GIEKRAQELGIELTKFFRDD-DLLE-ILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHcCCEEEEEeccc-hhHH-hccCcCEEEEec
Confidence 45677888999998876532 1222 235799999865
No 469
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.17 E-value=61 Score=20.77 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCCCCcCCchHHHHHHHH-h-CCCCCEEEE
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGV 103 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~-~~~~PvLGI 103 (125)
.+.+.+++.|.++++.... ..++ ...++|.|++++= .....+.+++ . ..++|+.-|
T Consensus 18 ki~~~~~~~~~~~~v~~~~---~~~~~~~~~~~Diil~~Pq------v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVP---ESELEEYIDDADVVLLGPQ------VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred HHHHHHHHCCCceEEEEec---HHHHHHhcCCCCEEEEChh------HHHHHHHHHHHhccCCCcEEEc
Confidence 4667778899988777643 3333 2247998888552 1112344443 3 456887544
No 470
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=52.07 E-value=64 Score=26.10 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=39.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEEc
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGIC 104 (125)
|+|+|........+.+.|+..|+.+............+....+|.+++--. . +... -.....+++.....|++-+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~-~-p~~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVR-M-PGEDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCC-C-CCCCHHHHHHHHHHhCCCCeEEEEe
Confidence 467776555556678888888887765432101111223346888776221 1 1111 12334454444457777654
No 471
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=51.91 E-value=89 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 20 GVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 35566777899988776432111 1222357999999775
No 472
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.76 E-value=1.1e+02 Score=25.25 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=44.8
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCC--CeEEEEeCCC---CCHHHH-------hc-CCCCEEEECCCCCCcCCchHH
Q 033201 22 NNKNPIIVIDNYDSF-TYNLCQYMGELG--YHFEVYRNDE---LTVEEL-------KR-KNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g--~~~~v~~~~~---~~~~~~-------~~-~~~dgiIi~GG~~~~~~~~~~ 87 (125)
....+|+||-...+- .+.+.+-+++.. +++.++|..- ....++ .. .++|.|||.=|-|+..|--.+
T Consensus 127 ~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 127 HFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 567899999765543 356777776643 5676666431 112222 21 248998886554554432211
Q ss_pred --HHHHHHh-CCCCCEE
Q 033201 88 --LQTVLEL-GPTVPLF 101 (125)
Q Consensus 88 --~~~I~~~-~~~~PvL 101 (125)
..+.+.+ ...+||.
T Consensus 207 n~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 207 NDEKVARAIFLSKIPII 223 (432)
T ss_pred CcHHHHHHHHcCCCCEE
Confidence 2444553 5668886
No 473
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=51.58 E-value=56 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=31.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-cCCCCEEEECCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPG 77 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dgiIi~GG 77 (125)
|+|++....+.....+.+++++.++++...+.. .+.+.+. ..++|++|+.+.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~ii~~~~ 54 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKEL-LSSATVDQLKDYDGVTTMQF 54 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCC-CCHHHHHHhCCCCEEEEecC
Confidence 788888775544555667888887766554321 2222222 247888877543
No 474
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.80 E-value=77 Score=25.08 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=37.9
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
.-.+++|+||......-..+...|.+.|+.+.+++....++.+.- .+.|-+|..=|
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~-~~ADIVIsavg 211 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALC-RQADIVVAAVG 211 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHH-hcCCEEEEecC
Confidence 346789999987545566788999999999988854333444432 35677665433
No 475
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.52 E-value=97 Score=22.61 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=21.0
Q ss_pred HHHHHHhC-----CCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 40 LCQYMGEL-----GYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~-----g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+.+.+++. |+++.+....... .+.+....+||||+.+.
T Consensus 21 i~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 21 AQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred HHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44555554 6777776543111 11122347999999764
No 476
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.48 E-value=68 Score=20.81 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=39.5
Q ss_pred eEEEEECCCCch--HHHHHHHHhCC-CeEEEEeCCCCCHHHHh-cCCCCEEE-ECCCCCCcCCchHHHHHHHHh-CCCCC
Q 033201 26 PIIVIDNYDSFT--YNLCQYMGELG-YHFEVYRNDELTVEELK-RKNPRGVL-ISPGPGAPQDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 26 ~I~vid~~~~~~--~~i~~~l~~~g-~~~~v~~~~~~~~~~~~-~~~~dgiI-i~GG~~~~~~~~~~~~~I~~~-~~~~P 99 (125)
||.++..+.++. ..+...|.+.+ ..+...+.... ..... ...-|.+| +|-+ + ...+..+.++.+ +++.|
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~I~iS~s-G---~t~e~~~~~~~a~~~g~~ 75 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEF-RYRRPLLDEDTLVIAISQS-G---ETADTLAALRLAKEKGAK 75 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHh-hhcCCCCCCCcEEEEEeCC-c---CCHHHHHHHHHHHHcCCe
Confidence 467777765543 34666677765 66665542211 00011 11234433 3332 2 223355666665 67789
Q ss_pred EEEEchH
Q 033201 100 LFGVCMG 106 (125)
Q Consensus 100 vLGIC~G 106 (125)
+++|+-.
T Consensus 76 vi~iT~~ 82 (126)
T cd05008 76 TVAITNV 82 (126)
T ss_pred EEEEECC
Confidence 9999864
No 477
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=50.29 E-value=26 Score=23.30 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=23.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
+||+|++.+ ...-.+.+.++++|++...+..+
T Consensus 3 kkvLIanrG-eia~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRG-EIAVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS-H-HHHHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECCC-HHHHHHHHHHHHhCCcceeccCc
Confidence 578877653 33456889999999999877543
No 478
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=50.23 E-value=97 Score=26.35 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--CHHHHhc--CCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--TVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~--~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
...++|.++.-+++.. ..+.+.|+ .++++.-+..+.. ..+++.. .++|.+|| .||.......+ ...|.+
T Consensus 181 ~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI-~~P~~~ls~~e-~~~Ldq 257 (552)
T TIGR03521 181 PREKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVI-AKPTEAFSERE-KYILDQ 257 (552)
T ss_pred ccCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEE-eCCCccCCHHH-HHHHHH
Confidence 4557888885443322 34556666 6677765554310 1122322 27999998 55553333333 355555
Q ss_pred -hCCCCCEE
Q 033201 94 -LGPTVPLF 101 (125)
Q Consensus 94 -~~~~~PvL 101 (125)
+.++.++|
T Consensus 258 fl~~GG~ll 266 (552)
T TIGR03521 258 YIMNGGKAL 266 (552)
T ss_pred HHHcCCeEE
Confidence 34444443
No 479
>PRK13057 putative lipid kinase; Reviewed
Probab=50.10 E-value=82 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-CHHHH---hcCCCCEEEECCCCCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDEL-TVEEL---KRKNPRGVLISPGPGA 80 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~~---~~~~~dgiIi~GG~~~ 80 (125)
..+.+.|++.|+++.+...... ...++ ...++|.||+.||-++
T Consensus 16 ~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGT 62 (287)
T PRK13057 16 AAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGT 62 (287)
T ss_pred HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHH
Confidence 3577889999999877654311 11111 1246899999999543
No 480
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=49.66 E-value=17 Score=31.23 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=17.9
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.+.|++|+-||.++......+.+..++...+++|.||
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGV 225 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGC 225 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 4677777777755432222222222222233566653
No 481
>PRK08227 autoinducer 2 aldolase; Validated
Probab=49.63 E-value=32 Score=26.65 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEchH
Q 033201 42 QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 106 (125)
Q Consensus 42 ~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G 106 (125)
+.-.++|+++.=+++...++.++-...+--||+.|||.. +..++.+.+++ ++.+ --|||.|
T Consensus 165 RiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~--~~~~~L~~v~~ai~aG--a~Gv~~G 226 (264)
T PRK08227 165 RIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKL--PERDALEMCYQAIDEG--ASGVDMG 226 (264)
T ss_pred HHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCC--CHHHHHHHHHHHHHcC--Cceeeec
Confidence 444667888765555322334443334557999999876 33445555555 3322 4677776
No 482
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=49.58 E-value=93 Score=23.99 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=28.4
Q ss_pred CCeEEEE--ECCCCchH----HHHHHHHhCC-CeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVI--DNYDSFTY----NLCQYMGELG-YHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vi--d~~~~~~~----~i~~~l~~~g-~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
...|.++ +....|.. .+.+.+++.| +.+.+....... .+.+....+||+|+.+.
T Consensus 24 ~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 90 (330)
T PRK15395 24 DTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 90 (330)
T ss_pred CceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3556655 33333433 3556667775 566654432111 11223357999999764
No 483
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=49.51 E-value=36 Score=25.35 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=33.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
|+++|+..+ .+...+.+.|.+.|.++..+..+....++.....++.-++.|-
T Consensus 1 m~iiIiG~G-~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd 52 (225)
T COG0569 1 MKIIIIGAG-RVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGD 52 (225)
T ss_pred CEEEEECCc-HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEec
Confidence 577777653 5667789999999999988876533333322223565555444
No 484
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=49.45 E-value=17 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=19.0
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.++|.+++-||.++......+.+.+++...++|+.||
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGI 207 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGI 207 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4677777777755432222333333332334666665
No 485
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=49.37 E-value=1.1e+02 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~G 76 (125)
.+.+.+++.|+.+.+...... +....++||+|+.+
T Consensus 88 ~i~~~~~~~g~~~~~~~~~~~---~~~~~~vDgiI~~~ 122 (327)
T PRK10339 88 GIETQCEKLGIELTNCYEHSG---LPDIKNVTGILIVG 122 (327)
T ss_pred HHHHHHHHCCCEEEEeecccc---ccccccCCEEEEeC
Confidence 355677888999876532211 11234799999976
No 486
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=49.31 E-value=65 Score=25.37 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc
Q 033201 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~ 84 (125)
...++|.||-. +.+.. ..+.+.+++.|.+..++-.+..+.+.+...++|..|+.+=|..+.+.
T Consensus 210 ~~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~iD~fV~~aCPr~sidd 278 (308)
T TIGR03682 210 LDAKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNLDFDAYVNTACPRIAIDD 278 (308)
T ss_pred hhCCeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcCCcCEEEEccCCCccccc
Confidence 45567877732 22222 34556678899999888777777888866679999999988766544
No 487
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=49.23 E-value=1.8e+02 Score=25.60 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=33.8
Q ss_pred cccCCCCCCeEEEEECCCC-----ch----HHHHHHHHh----C-CCeEEEEe--CCCC-CHHH-Hh----cCCCCEEEE
Q 033201 17 DKKSKNNKNPIIVIDNYDS-----FT----YNLCQYMGE----L-GYHFEVYR--NDEL-TVEE-LK----RKNPRGVLI 74 (125)
Q Consensus 17 ~~~~~~~~~~I~vid~~~~-----~~----~~i~~~l~~----~-g~~~~v~~--~~~~-~~~~-~~----~~~~dgiIi 74 (125)
+-..|+.++++.||...+. .. ..+.+++.+ . |+++..+. .|+. .+.+ +. ...+|.||.
T Consensus 451 ~~~~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIt 530 (659)
T PLN02699 451 SIEAQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILT 530 (659)
T ss_pred ccccccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3355678889998843321 11 234455544 3 87765432 2211 1111 21 136899999
Q ss_pred CCCCC
Q 033201 75 SPGPG 79 (125)
Q Consensus 75 ~GG~~ 79 (125)
+||.+
T Consensus 531 TGGts 535 (659)
T PLN02699 531 LGGTG 535 (659)
T ss_pred CCCcc
Confidence 99965
No 488
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=49.16 E-value=1e+02 Score=23.97 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=40.9
Q ss_pred CeEEEEECCC---CchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 25 NPIIVIDNYD---SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 25 ~~I~vid~~~---~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
+|++||--.. .+...+.+.|++. .++.++... +.+.+.+ ...++|.||--|| +++.|..+ ++.
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK---~ia 98 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK---AVA 98 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH---HHH
Confidence 5777773221 2334566777766 666555321 1223222 2347999995565 45545443 333
Q ss_pred H-hCCCCCEEEEch
Q 033201 93 E-LGPTVPLFGVCM 105 (125)
Q Consensus 93 ~-~~~~~PvLGIC~ 105 (125)
. +.+++|+..|.-
T Consensus 99 ~~~~~~~p~i~iPT 112 (332)
T cd07766 99 ALLNRGLPIIIVPT 112 (332)
T ss_pred HHhcCCCCEEEEeC
Confidence 3 235789888763
No 489
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=49.12 E-value=63 Score=25.49 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred CeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCC-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
+|++|+--...+ ...+.+.|++.|..+.+..++ +.+.+.+ ...++|.||--|| +++.|..+.....
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia~~-- 99 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVADR-- 99 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHHHH--
Confidence 577766322122 234667777777654333222 1122222 2357999995566 4555555432222
Q ss_pred hCCCCCEEEEch
Q 033201 94 LGPTVPLFGVCM 105 (125)
Q Consensus 94 ~~~~~PvLGIC~ 105 (125)
.++|+.-|.-
T Consensus 100 --~~~p~i~VPT 109 (349)
T cd08550 100 --LDKPIVIVPT 109 (349)
T ss_pred --cCCCEEEeCC
Confidence 2478777764
No 490
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=48.94 E-value=24 Score=26.98 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=31.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEe---CCCCCHHHH----hcCCCCEEEECCCCCCcC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR---NDELTVEEL----KRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~---~~~~~~~~~----~~~~~dgiIi~GG~~~~~ 82 (125)
|||+|+...+.....+.+.|++.|+++.... .+-.+.+.+ ....+|.||-+.+..++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 7899996533334678899998888776662 221222222 224799999999866554
No 491
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=48.50 E-value=1.4e+02 Score=23.87 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=36.0
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEe-CC-CCCHHH-------HhcCCCCEEEECCCCCCcCCchH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYR-ND-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~-~~-~~~~~~-------~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+|++|+--.. ++...+.+.|++.|.++.++. .. +.+.+. ....++|.||--|| +++.|..+
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK 102 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAK 102 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 6888773211 234567788888888887663 11 112222 22357999996666 56666554
No 492
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.47 E-value=1.4e+02 Score=23.76 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=35.5
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+|++|+--.. ++...+.+.|++.|.++.++.- . +.+.+.+ ...++|.||=-|| +++.|..+.
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 5777773211 2345677888888988876631 1 1122222 2357999995555 466565443
No 493
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=48.40 E-value=18 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
.+.|++|+-||.++......+.+..++...+++|.||
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 4677777777754432222222222222224555554
No 494
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=48.25 E-value=80 Score=20.97 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=35.8
Q ss_pred HHHHHHHHh-CCCeEEEEeC--CCCC---HHHHhcCCCCEEEECCCC-CCcCCchHHHHHHHH--hCCCCCEE
Q 033201 38 YNLCQYMGE-LGYHFEVYRN--DELT---VEELKRKNPRGVLISPGP-GAPQDSGISLQTVLE--LGPTVPLF 101 (125)
Q Consensus 38 ~~i~~~l~~-~g~~~~v~~~--~~~~---~~~~~~~~~dgiIi~GG~-~~~~~~~~~~~~I~~--~~~~~PvL 101 (125)
..-.++|++ .|..++.+.. .+.. .+-+....+|.||.+..| +.-....+. ..||+ ...++|++
T Consensus 34 ~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg-~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 34 GTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDV-KALLRLCDVYNIPLA 105 (115)
T ss_pred chHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccccH-HHHHHHHHHcCCCEE
Confidence 345677777 7888776643 2211 122344579999999876 321112222 34544 37789986
No 495
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=48.08 E-value=33 Score=25.89 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCeEEEEeCCC--C----CHHHHhcCCCCEEEECCC
Q 033201 39 NLCQYMGELGYHFEVYRNDE--L----TVEELKRKNPRGVLISPG 77 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~--~----~~~~~~~~~~dgiIi~GG 77 (125)
.+...|+.-+++++..+... . +.+.+ ..||+||||-=
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L--~~YDaivlSDi 78 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGL--DAYDAIVLSDI 78 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhh--cccceEEEeec
Confidence 57788998889998776431 1 12222 36999999754
No 496
>PRK10651 transcriptional regulator NarL; Provisional
Probab=47.75 E-value=89 Score=21.40 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=40.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
+...+|++++........+.+.|+.. ++.+.....+. .....+....+|.+++--...+ .+.......+++.....|
T Consensus 4 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 4 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-MNGLETLDKLREKSLSGR 82 (216)
T ss_pred CcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCc
Confidence 45568999987554455677777654 34332221111 1112233346888877332111 111223344444334567
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-++
T Consensus 83 vi~l~ 87 (216)
T PRK10651 83 IVVFS 87 (216)
T ss_pred EEEEe
Confidence 77664
No 497
>PLN02204 diacylglycerol kinase
Probab=47.73 E-value=31 Score=29.98 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=36.0
Q ss_pred CCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCC-CCHHHH----h---cCCCCEEEECCCCCCcC
Q 033201 22 NNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDE-LTVEEL----K---RKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~-~~~~~~----~---~~~~dgiIi~GG~~~~~ 82 (125)
...++++||-|..+- .+.+...|++.++++.++.... ....++ . ...||+||..||-+..+
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~n 232 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFN 232 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHH
Confidence 445677777553211 1246678888998877664321 111111 1 24799999999966543
No 498
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.71 E-value=77 Score=20.69 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEEe-CCC---CCH-HHHhc-CCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEE
Q 033201 39 NLCQYMGELGYHFEVYR-NDE---LTV-EELKR-KNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLF 101 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~-~~~---~~~-~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~PvL 101 (125)
.-.++|++.|++++.+. ..+ ... +-+.. .++|.||-.+.+........--..||+ .+.++|++
T Consensus 33 gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 33 GTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEE
Confidence 45677888888877653 211 112 22445 579999987754431111111123443 36789986
No 499
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=47.42 E-value=53 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCeEEEEeCCC-CCHHHH----hcCCCCEEEECCCCCC
Q 033201 39 NLCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGA 80 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~-~~~~~~----~~~~~dgiIi~GG~~~ 80 (125)
.+.+.|++.|++++++.... ....++ ...++|.||+.||-++
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGT 64 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChH
Confidence 46677888998887664321 222222 2246899999999654
No 500
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=47.40 E-value=89 Score=21.29 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=36.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
++|++++........+.+.|+.. ++.......+.. ....+....+|.+|+-=. .+... ...+++.+....|++-
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~--g~~~~~~l~~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDIS--MPDIS--GLELLSQLPKGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCC--HHHHHHHHccCCCEEE
Confidence 47899987555555677777643 444322211100 112233346888777211 11111 2344555544577766
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 78 ~s 79 (196)
T PRK10360 78 LS 79 (196)
T ss_pred EE
Confidence 54
Done!