Query 033201
Match_columns 125
No_of_seqs 167 out of 1278
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 99.9 6.5E-24 2.2E-28 154.2 12.5 96 27-122 4-102 (195)
2 1wl8_A GMP synthase [glutamine 99.9 9.9E-23 3.4E-27 146.9 13.9 96 25-122 1-97 (189)
3 1i1q_B Anthranilate synthase c 99.9 4.5E-23 1.5E-27 149.3 10.9 96 25-121 1-100 (192)
4 1a9x_B Carbamoyl phosphate syn 99.9 6.1E-22 2.1E-26 157.4 12.9 96 24-122 190-286 (379)
5 3r75_A Anthranilate/para-amino 99.9 3.7E-22 1.3E-26 167.5 12.2 112 7-122 420-546 (645)
6 2a9v_A GMP synthase; structura 99.9 2.7E-22 9.3E-27 147.7 8.3 98 22-122 11-110 (212)
7 3tqi_A GMP synthase [glutamine 99.9 5.4E-22 1.9E-26 163.1 7.7 98 23-122 9-107 (527)
8 3uow_A GMP synthetase; structu 99.8 3.6E-21 1.2E-25 159.2 10.7 98 24-122 7-108 (556)
9 2vpi_A GMP synthase; guanine m 99.8 1.3E-21 4.3E-26 144.9 6.8 97 24-122 24-121 (218)
10 1gpm_A GMP synthetase, XMP ami 99.8 6.7E-21 2.3E-25 156.5 10.0 97 24-122 7-104 (525)
11 2ywb_A GMP synthase [glutamine 99.8 8.4E-21 2.9E-25 155.2 9.0 95 26-122 1-96 (503)
12 3l7n_A Putative uncharacterize 99.8 4.7E-20 1.6E-24 137.5 10.1 97 25-122 1-109 (236)
13 3m3p_A Glutamine amido transfe 99.8 4.6E-20 1.6E-24 139.3 8.7 97 24-122 3-107 (250)
14 2vxo_A GMP synthase [glutamine 99.8 2.3E-20 8E-25 157.7 6.3 99 22-122 27-126 (697)
15 4gud_A Imidazole glycerol phos 99.8 4E-20 1.4E-24 135.0 5.9 93 23-122 1-97 (211)
16 1o1y_A Conserved hypothetical 99.8 3.7E-19 1.3E-23 133.1 9.9 100 22-123 10-119 (239)
17 2ywj_A Glutamine amidotransfer 99.8 1E-18 3.5E-23 125.4 6.2 86 25-119 1-90 (186)
18 2nv0_A Glutamine amidotransfer 99.7 4.3E-18 1.5E-22 123.0 4.2 87 25-118 2-93 (196)
19 1q7r_A Predicted amidotransfer 99.7 3.2E-18 1.1E-22 126.1 3.1 93 20-119 19-116 (219)
20 1ka9_H Imidazole glycerol phos 99.7 1.2E-17 4E-22 121.3 4.4 92 24-122 2-112 (200)
21 3d54_D Phosphoribosylformylgly 99.7 3.6E-17 1.2E-21 119.0 6.6 93 24-122 2-106 (213)
22 3fij_A LIN1909 protein; 11172J 99.7 1E-16 3.5E-21 120.7 8.8 83 38-121 31-132 (254)
23 2v4u_A CTP synthase 2; pyrimid 99.7 2.7E-17 9.3E-22 126.2 4.5 98 19-119 20-141 (289)
24 1gpw_B Amidotransferase HISH; 99.7 8.3E-17 2.9E-21 116.6 5.3 83 25-115 1-95 (201)
25 1vco_A CTP synthetase; tetrame 99.6 7E-17 2.4E-21 133.4 5.1 96 25-122 308-409 (550)
26 1l9x_A Gamma-glutamyl hydrolas 99.6 6.9E-16 2.4E-20 119.7 10.1 82 38-120 55-147 (315)
27 2iss_D Glutamine amidotransfer 99.6 1.3E-16 4.5E-21 116.5 4.2 89 22-117 18-111 (208)
28 2w7t_A CTP synthetase, putativ 99.6 1.9E-16 6.5E-21 120.6 4.0 92 25-119 9-118 (273)
29 2ywd_A Glutamine amidotransfer 99.6 2.5E-16 8.4E-21 112.9 2.7 86 24-116 2-93 (191)
30 1s1m_A CTP synthase; CTP synth 99.6 2.6E-16 8.8E-21 129.9 2.4 81 38-122 306-397 (545)
31 2abw_A PDX2 protein, glutamina 99.5 4.9E-15 1.7E-19 109.3 4.4 87 25-118 4-101 (227)
32 3nva_A CTP synthase; rossman f 99.5 4.5E-15 1.5E-19 121.7 4.2 99 20-121 289-403 (535)
33 2vdj_A Homoserine O-succinyltr 99.5 1.1E-13 3.8E-18 107.0 8.6 94 23-116 34-154 (301)
34 1jvn_A Glutamine, bifunctional 99.5 6.8E-15 2.3E-19 121.6 1.6 94 24-122 4-116 (555)
35 2h2w_A Homoserine O-succinyltr 99.5 1.5E-13 5E-18 106.7 8.1 95 22-116 45-166 (312)
36 4hcj_A THIJ/PFPI domain protei 99.1 2.2E-10 7.6E-15 82.1 7.5 75 39-113 26-117 (177)
37 1oi4_A Hypothetical protein YH 99.1 4.5E-10 1.5E-14 80.8 8.8 94 19-113 18-134 (193)
38 3ugj_A Phosphoribosylformylgly 99.1 9E-11 3.1E-15 104.6 5.4 89 23-113 1046-1152(1303)
39 1fy2_A Aspartyl dipeptidase; s 99.0 1.7E-10 6E-15 85.5 3.7 88 23-114 30-130 (229)
40 3l4e_A Uncharacterized peptida 99.0 4.6E-10 1.6E-14 82.2 5.2 86 24-113 27-129 (206)
41 3l18_A Intracellular protease 98.9 1.6E-09 5.6E-14 75.7 5.4 89 24-113 2-111 (168)
42 1vhq_A Enhancing lycopene bios 98.9 6.7E-09 2.3E-13 76.7 7.6 94 24-117 6-154 (232)
43 3l3b_A ES1 family protein; ssg 98.8 1.3E-08 4.4E-13 76.2 8.4 92 23-114 22-168 (242)
44 2ab0_A YAJL; DJ-1/THIJ superfa 98.8 9.5E-09 3.2E-13 74.5 6.7 90 24-113 2-116 (205)
45 2rk3_A Protein DJ-1; parkinson 98.8 1.9E-08 6.6E-13 72.2 8.0 90 23-113 2-115 (197)
46 4e08_A DJ-1 beta; flavodoxin-l 98.8 2.9E-08 9.8E-13 70.9 7.9 90 23-113 4-116 (190)
47 2vrn_A Protease I, DR1199; cys 98.7 3.5E-08 1.2E-12 70.2 7.8 90 23-113 8-124 (190)
48 3efe_A THIJ/PFPI family protei 98.7 4.5E-08 1.5E-12 71.3 8.5 90 24-113 5-121 (212)
49 2fex_A Conserved hypothetical 98.7 2.9E-08 9.9E-13 70.8 6.7 89 25-113 2-110 (188)
50 1u9c_A APC35852; structural ge 98.7 4.7E-08 1.6E-12 71.3 7.9 91 23-113 4-138 (224)
51 3cne_A Putative protease I; st 98.7 7.2E-08 2.5E-12 67.8 7.6 89 23-113 1-120 (175)
52 3f5d_A Protein YDEA; unknow pr 98.6 1.4E-07 4.9E-12 68.6 8.9 88 24-113 3-109 (206)
53 3ot1_A 4-methyl-5(B-hydroxyeth 98.6 3.9E-08 1.3E-12 71.4 5.1 93 20-113 5-121 (208)
54 3ej6_A Catalase-3; heme, hydro 98.5 3.6E-07 1.2E-11 77.1 8.4 92 22-113 535-646 (688)
55 3noq_A THIJ/PFPI family protei 98.4 3.8E-07 1.3E-11 67.4 6.6 88 23-113 4-113 (231)
56 3uk7_A Class I glutamine amido 98.4 6.7E-07 2.3E-11 70.4 8.4 91 22-113 203-330 (396)
57 3uk7_A Class I glutamine amido 98.4 7.3E-07 2.5E-11 70.2 8.3 90 23-113 11-137 (396)
58 3gra_A Transcriptional regulat 98.4 2.1E-07 7.1E-12 67.4 4.6 89 24-113 5-117 (202)
59 3er6_A Putative transcriptiona 98.4 3.6E-07 1.2E-11 66.4 5.8 90 22-113 6-124 (209)
60 3ttv_A Catalase HPII; heme ori 98.4 2.7E-07 9.2E-12 78.4 5.5 90 22-113 598-708 (753)
61 3fse_A Two-domain protein cont 98.4 4E-07 1.4E-11 71.9 6.0 91 22-113 8-121 (365)
62 3kkl_A Probable chaperone prot 98.4 6.5E-07 2.2E-11 66.9 6.2 74 40-113 34-147 (244)
63 1rw7_A YDR533CP; alpha-beta sa 98.4 4.5E-07 1.5E-11 67.3 5.3 75 40-114 34-148 (243)
64 3ewn_A THIJ/PFPI family protei 98.4 8.9E-07 3E-11 66.5 6.9 89 23-113 22-133 (253)
65 3n7t_A Macrophage binding prot 98.4 5.7E-07 2E-11 67.4 5.8 74 40-113 40-154 (247)
66 1n57_A Chaperone HSP31, protei 98.3 1.7E-06 5.8E-11 66.1 7.8 75 40-114 81-195 (291)
67 2iuf_A Catalase; oxidoreductas 98.2 2.7E-06 9.3E-11 71.9 7.1 91 23-113 528-648 (688)
68 4gdh_A DJ-1, uncharacterized p 98.2 1.4E-06 4.7E-11 62.7 4.1 89 23-113 3-122 (194)
69 1sy7_A Catalase 1; heme oxidat 98.2 4.3E-06 1.5E-10 71.0 7.7 92 23-115 533-646 (715)
70 3mgk_A Intracellular protease/ 98.1 1.1E-06 3.8E-11 63.9 3.0 88 23-113 3-113 (211)
71 3bhn_A THIJ/PFPI domain protei 97.8 1.1E-05 3.8E-10 59.8 3.9 85 24-113 20-128 (236)
72 3en0_A Cyanophycinase; serine 96.6 0.00095 3.3E-08 51.0 2.7 87 24-112 56-160 (291)
73 3snk_A Response regulator CHEY 96.1 0.004 1.4E-07 40.3 3.0 92 13-105 3-95 (135)
74 3eod_A Protein HNR; response r 96.0 0.033 1.1E-06 35.4 7.4 83 22-105 5-87 (130)
75 3grc_A Sensor protein, kinase; 95.7 0.033 1.1E-06 35.9 6.3 84 22-107 4-90 (140)
76 1z0s_A Probable inorganic poly 95.7 0.03 1E-06 42.5 6.7 71 24-106 29-100 (278)
77 2qxy_A Response regulator; reg 95.3 0.027 9.1E-07 36.4 4.7 80 23-105 3-83 (142)
78 3hv2_A Response regulator/HD d 94.9 0.079 2.7E-06 34.8 6.3 83 22-105 12-94 (153)
79 2pln_A HP1043, response regula 94.9 0.065 2.2E-06 34.4 5.7 78 22-105 16-94 (137)
80 3cg4_A Response regulator rece 94.8 0.061 2.1E-06 34.6 5.4 82 22-104 5-88 (142)
81 2rjn_A Response regulator rece 94.8 0.096 3.3E-06 34.3 6.5 83 23-106 6-88 (154)
82 3gt7_A Sensor protein; structu 94.8 0.091 3.1E-06 34.6 6.3 80 23-104 6-88 (154)
83 2zay_A Response regulator rece 94.7 0.059 2E-06 34.9 5.1 82 23-105 7-90 (147)
84 2j48_A Two-component sensor ki 94.7 0.067 2.3E-06 32.7 5.1 80 24-104 1-82 (119)
85 2qr3_A Two-component system re 94.6 0.074 2.5E-06 34.0 5.4 82 24-105 3-88 (140)
86 3i42_A Response regulator rece 94.6 0.054 1.8E-06 34.2 4.6 79 24-104 3-84 (127)
87 2an1_A Putative kinase; struct 94.5 0.12 4.2E-06 38.5 7.2 75 25-106 6-96 (292)
88 3jte_A Response regulator rece 94.5 0.12 3.9E-06 33.3 6.1 81 24-105 3-85 (143)
89 2rdm_A Response regulator rece 94.4 0.16 5.5E-06 32.0 6.7 82 24-105 5-87 (132)
90 4e7p_A Response regulator; DNA 94.4 0.099 3.4E-06 34.1 5.7 83 22-105 18-102 (150)
91 3f6c_A Positive transcription 94.3 0.16 5.4E-06 32.2 6.5 79 25-105 2-82 (134)
92 3rht_A (gatase1)-like protein; 94.3 0.16 5.6E-06 37.9 7.4 78 23-103 3-85 (259)
93 1qkk_A DCTD, C4-dicarboxylate 94.3 0.1 3.5E-06 34.2 5.7 76 24-104 3-82 (155)
94 1u0t_A Inorganic polyphosphate 94.3 0.076 2.6E-06 40.3 5.6 77 24-106 4-108 (307)
95 3hdg_A Uncharacterized protein 94.2 0.081 2.8E-06 33.8 4.9 82 23-105 6-87 (137)
96 3cnb_A DNA-binding response re 94.1 0.11 3.6E-06 33.3 5.4 82 22-104 6-91 (143)
97 2ark_A Flavodoxin; FMN, struct 94.1 0.28 9.5E-06 34.0 7.8 79 24-105 4-96 (188)
98 3f6p_A Transcriptional regulat 94.0 0.22 7.4E-06 31.2 6.5 79 24-105 2-81 (120)
99 3hzh_A Chemotaxis response reg 94.0 0.11 3.8E-06 34.3 5.3 82 23-105 35-119 (157)
100 2gkg_A Response regulator homo 93.9 0.072 2.4E-06 33.2 4.1 80 24-103 5-86 (127)
101 2r47_A Uncharacterized protein 93.8 0.013 4.3E-07 41.0 0.3 80 24-105 26-125 (157)
102 3kbq_A Protein TA0487; structu 93.8 0.17 5.9E-06 35.6 6.3 87 24-115 3-107 (172)
103 3cg0_A Response regulator rece 93.8 0.12 4E-06 33.0 5.1 83 22-105 7-90 (140)
104 2b4a_A BH3024; flavodoxin-like 93.8 0.11 3.8E-06 33.2 5.0 81 22-104 13-95 (138)
105 1k68_A Phytochrome response re 93.8 0.21 7.3E-06 31.5 6.3 81 24-105 2-93 (140)
106 1mvo_A PHOP response regulator 93.7 0.17 6E-06 32.1 5.8 81 23-105 2-83 (136)
107 3rfq_A Pterin-4-alpha-carbinol 93.7 0.15 5E-06 36.4 5.8 70 8-79 11-100 (185)
108 3a10_A Response regulator; pho 93.7 0.32 1.1E-05 29.9 6.8 78 25-104 2-80 (116)
109 3h5i_A Response regulator/sens 93.6 0.24 8.1E-06 31.9 6.3 81 23-104 4-85 (140)
110 3gl9_A Response regulator; bet 93.6 0.27 9.4E-06 30.9 6.5 79 24-104 2-83 (122)
111 3hdv_A Response regulator; PSI 93.6 0.14 4.6E-06 32.7 5.0 81 23-105 6-89 (136)
112 2ayx_A Sensor kinase protein R 93.4 0.28 9.4E-06 35.5 7.0 83 22-105 127-209 (254)
113 3lte_A Response regulator; str 93.3 0.057 1.9E-06 34.3 2.9 54 21-74 3-56 (132)
114 3kht_A Response regulator; PSI 93.3 0.17 5.7E-06 32.6 5.2 81 23-105 4-89 (144)
115 1kgs_A DRRD, DNA binding respo 93.3 0.23 8E-06 34.5 6.3 80 24-105 2-82 (225)
116 3lua_A Response regulator rece 93.2 0.13 4.5E-06 33.0 4.6 81 23-105 3-89 (140)
117 3kto_A Response regulator rece 93.2 0.048 1.7E-06 35.1 2.4 78 22-105 4-88 (136)
118 1srr_A SPO0F, sporulation resp 93.2 0.2 6.9E-06 31.3 5.4 79 24-104 3-82 (124)
119 2i2c_A Probable inorganic poly 93.1 0.16 5.5E-06 37.8 5.4 63 25-106 1-70 (272)
120 2pl1_A Transcriptional regulat 93.0 0.44 1.5E-05 29.3 6.7 78 25-104 1-79 (121)
121 1k66_A Phytochrome response re 92.8 0.24 8.1E-06 31.7 5.4 82 22-105 4-100 (149)
122 3crn_A Response regulator rece 92.8 0.32 1.1E-05 30.8 6.0 79 24-104 3-82 (132)
123 2qv7_A Diacylglycerol kinase D 92.7 0.87 3E-05 34.6 9.2 87 23-115 23-125 (337)
124 3cz5_A Two-component response 92.7 0.31 1E-05 31.7 5.9 80 24-104 5-86 (153)
125 3iwt_A 178AA long hypothetical 92.7 0.48 1.7E-05 32.8 7.2 56 22-79 13-92 (178)
126 3nhm_A Response regulator; pro 92.6 0.38 1.3E-05 30.2 6.1 80 23-105 3-85 (133)
127 2gk3_A Putative cytoplasmic pr 92.6 0.17 5.8E-06 37.4 4.9 64 38-103 43-124 (256)
128 3pzy_A MOG; ssgcid, seattle st 92.6 0.13 4.3E-06 35.8 3.9 56 23-79 6-77 (164)
129 1dbw_A Transcriptional regulat 92.6 0.55 1.9E-05 29.3 6.8 79 24-104 3-82 (126)
130 3rqi_A Response regulator prot 92.6 0.22 7.7E-06 33.9 5.2 80 23-104 6-86 (184)
131 3cfy_A Putative LUXO repressor 92.6 0.35 1.2E-05 31.0 6.0 78 25-104 5-83 (137)
132 1tmy_A CHEY protein, TMY; chem 92.5 0.25 8.5E-06 30.6 5.0 79 24-104 2-82 (120)
133 3ff4_A Uncharacterized protein 92.5 1.1 3.8E-05 29.5 8.4 34 23-56 3-39 (122)
134 1mkz_A Molybdenum cofactor bio 92.3 0.37 1.3E-05 33.5 6.2 57 21-79 7-80 (172)
135 4dad_A Putative pilus assembly 92.1 0.16 5.5E-06 32.8 3.8 82 22-105 18-103 (146)
136 2g2c_A Putative molybdenum cof 92.1 0.38 1.3E-05 33.2 5.9 55 23-79 4-80 (167)
137 3hly_A Flavodoxin-like domain; 92.1 0.82 2.8E-05 31.0 7.6 78 25-104 1-89 (161)
138 1zgz_A Torcad operon transcrip 92.0 0.41 1.4E-05 29.6 5.6 78 24-104 2-80 (122)
139 3r0j_A Possible two component 91.8 0.41 1.4E-05 34.2 6.0 82 22-105 21-103 (250)
140 2a5l_A Trp repressor binding p 91.7 1.6 5.5E-05 29.9 8.9 77 25-104 6-115 (200)
141 1ys7_A Transcriptional regulat 91.5 0.52 1.8E-05 32.8 6.3 80 23-104 6-86 (233)
142 2qsj_A DNA-binding response re 91.4 0.37 1.3E-05 31.3 5.1 82 24-106 3-87 (154)
143 3t6k_A Response regulator rece 91.4 0.64 2.2E-05 29.7 6.2 80 24-105 4-86 (136)
144 2pjk_A 178AA long hypothetical 91.4 0.54 1.8E-05 33.0 6.2 56 22-79 13-92 (178)
145 3to5_A CHEY homolog; alpha(5)b 91.4 0.46 1.6E-05 31.6 5.5 80 23-104 11-94 (134)
146 3kcn_A Adenylate cyclase homol 91.3 0.5 1.7E-05 30.7 5.6 81 23-105 3-84 (151)
147 2is8_A Molybdopterin biosynthe 91.0 0.5 1.7E-05 32.5 5.6 44 34-79 20-73 (164)
148 1yio_A Response regulatory pro 90.9 0.51 1.7E-05 32.3 5.6 80 23-104 3-83 (208)
149 2gwr_A DNA-binding response re 90.8 0.86 2.9E-05 32.1 6.9 78 24-104 5-83 (238)
150 3l6u_A ABC-type sugar transpor 90.8 0.3 1E-05 35.2 4.5 77 22-103 6-95 (293)
151 2qvg_A Two component response 90.7 0.29 1E-05 31.2 4.0 81 23-105 6-97 (143)
152 2vzf_A NADH-dependent FMN redu 90.7 0.5 1.7E-05 33.0 5.4 79 24-105 2-110 (197)
153 3heb_A Response regulator rece 90.6 0.62 2.1E-05 30.2 5.6 81 23-105 3-97 (152)
154 3ilh_A Two component response 90.5 0.58 2E-05 29.7 5.3 81 23-105 8-100 (146)
155 3jy6_A Transcriptional regulat 90.5 0.91 3.1E-05 32.5 6.9 75 22-104 5-92 (276)
156 1y5e_A Molybdenum cofactor bio 90.5 0.79 2.7E-05 31.6 6.3 56 22-79 11-83 (169)
157 3c97_A Signal transduction his 90.4 0.17 5.9E-06 32.5 2.7 80 23-104 9-94 (140)
158 2zki_A 199AA long hypothetical 90.4 2.1 7.3E-05 29.3 8.5 78 24-104 4-114 (199)
159 1xhf_A DYE resistance, aerobic 90.3 1.1 3.8E-05 27.6 6.4 78 24-104 3-81 (123)
160 3tb6_A Arabinose metabolism tr 90.2 1.4 4.6E-05 31.6 7.6 78 25-104 16-106 (298)
161 3mm4_A Histidine kinase homolo 89.9 0.86 2.9E-05 31.7 6.2 82 22-105 59-159 (206)
162 2fz5_A Flavodoxin; alpha/beta 89.9 2.6 8.8E-05 26.9 9.4 60 40-102 20-85 (137)
163 2fn9_A Ribose ABC transporter, 89.8 0.66 2.3E-05 33.4 5.7 54 24-77 2-67 (290)
164 3c3m_A Response regulator rece 89.8 1.2 4E-05 28.3 6.3 79 24-104 3-84 (138)
165 3eul_A Possible nitrate/nitrit 89.7 0.51 1.8E-05 30.6 4.6 84 21-105 12-97 (152)
166 2a9o_A Response regulator; ess 89.6 0.81 2.8E-05 28.0 5.3 77 25-104 2-79 (120)
167 1jbe_A Chemotaxis protein CHEY 89.6 0.95 3.2E-05 28.1 5.7 81 23-105 3-87 (128)
168 3m9w_A D-xylose-binding peripl 89.4 1.1 3.7E-05 32.7 6.6 74 25-103 3-89 (313)
169 3l49_A ABC sugar (ribose) tran 89.4 0.7 2.4E-05 33.2 5.5 75 24-103 5-92 (291)
170 3m6m_D Sensory/regulatory prot 89.1 0.21 7.3E-06 32.4 2.3 82 22-105 12-98 (143)
171 3egc_A Putative ribose operon 89.0 0.86 2.9E-05 32.8 5.8 75 22-103 6-93 (291)
172 1di6_A MOGA, molybdenum cofact 88.9 0.62 2.1E-05 33.2 4.8 56 24-79 3-77 (195)
173 3kke_A LACI family transcripti 88.9 2.1 7.3E-05 31.0 7.9 76 22-104 13-101 (303)
174 1mb3_A Cell division response 88.8 0.92 3.2E-05 27.9 5.2 79 25-105 2-83 (124)
175 2fep_A Catabolite control prot 88.7 1.3 4.3E-05 32.1 6.5 77 22-104 14-102 (289)
176 1eiw_A Hypothetical protein MT 88.7 1.4 4.9E-05 28.7 6.1 68 25-103 4-73 (111)
177 3q9s_A DNA-binding response re 88.7 1 3.4E-05 32.3 5.9 80 23-105 36-116 (249)
178 3g1w_A Sugar ABC transporter; 88.6 0.79 2.7E-05 33.2 5.3 75 24-103 4-92 (305)
179 2hqr_A Putative transcriptiona 88.6 0.69 2.4E-05 32.1 4.8 76 25-105 1-76 (223)
180 3cs3_A Sugar-binding transcrip 88.5 0.69 2.4E-05 33.2 4.9 55 22-77 6-66 (277)
181 3s40_A Diacylglycerol kinase; 88.5 4.8 0.00017 30.0 9.8 89 21-115 5-108 (304)
182 2jba_A Phosphate regulon trans 88.4 0.28 9.6E-06 30.6 2.5 76 24-105 2-84 (127)
183 5nul_A Flavodoxin; electron tr 88.3 0.92 3.1E-05 29.5 5.1 61 40-103 19-85 (138)
184 3eag_A UDP-N-acetylmuramate:L- 88.3 5.3 0.00018 30.0 10.0 57 22-78 2-76 (326)
185 3eqz_A Response regulator; str 88.2 0.38 1.3E-05 30.2 3.0 88 24-117 3-101 (135)
186 3uug_A Multiple sugar-binding 88.1 3 0.0001 30.4 8.3 75 24-103 3-90 (330)
187 3fni_A Putative diflavin flavo 87.8 3.8 0.00013 27.6 8.1 55 23-78 3-65 (159)
188 1ydg_A Trp repressor binding p 87.6 2.3 7.8E-05 29.6 7.1 35 23-57 5-44 (211)
189 2oqr_A Sensory transduction pr 87.5 1.2 4.3E-05 30.8 5.6 80 23-105 3-83 (230)
190 3n53_A Response regulator rece 87.3 0.71 2.4E-05 29.3 4.0 80 24-105 3-84 (140)
191 3rot_A ABC sugar transporter, 87.3 0.55 1.9E-05 34.1 3.8 54 24-77 3-70 (297)
192 3f6r_A Flavodoxin; FMN binding 87.1 1.4 4.8E-05 28.9 5.5 79 25-105 2-93 (148)
193 2lpm_A Two-component response 87.1 0.23 8E-06 32.7 1.5 77 23-103 7-85 (123)
194 1rtt_A Conserved hypothetical 87.0 2.5 8.7E-05 29.0 7.0 82 23-105 5-116 (193)
195 2bon_A Lipid kinase; DAG kinas 87.0 3.2 0.00011 31.4 8.1 85 25-115 30-129 (332)
196 2pbq_A Molybdenum cofactor bio 86.9 1.8 6.1E-05 30.1 6.1 53 24-79 5-79 (178)
197 3bbl_A Regulatory protein of L 86.8 5.9 0.0002 28.3 9.2 75 24-104 4-94 (287)
198 1f4p_A Flavodoxin; electron tr 86.8 1.1 3.6E-05 29.4 4.7 78 25-105 1-92 (147)
199 3pfn_A NAD kinase; structural 86.7 1.4 4.6E-05 34.6 5.9 77 23-106 37-141 (365)
200 4e5v_A Putative THUA-like prot 86.7 3 0.0001 31.2 7.6 80 24-107 4-96 (281)
201 3k4h_A Putative transcriptiona 86.7 2.6 8.9E-05 30.1 7.1 56 22-77 6-78 (292)
202 3h1g_A Chemotaxis protein CHEY 86.6 1.9 6.6E-05 26.9 5.7 80 23-104 4-88 (129)
203 2q62_A ARSH; alpha/beta, flavo 86.6 5.3 0.00018 29.2 8.8 84 21-105 31-144 (247)
204 3kjx_A Transcriptional regulat 86.2 2.5 8.7E-05 31.3 7.0 76 22-103 66-153 (344)
205 2rgy_A Transcriptional regulat 86.2 2.8 9.5E-05 30.1 7.1 77 22-104 6-97 (290)
206 3c3k_A Alanine racemase; struc 86.1 2.1 7.3E-05 30.7 6.4 76 22-104 6-93 (285)
207 1jlj_A Gephyrin; globular alph 86.0 2.4 8.2E-05 29.9 6.5 55 23-79 13-89 (189)
208 1uuy_A CNX1, molybdopterin bio 85.9 3.7 0.00013 28.0 7.3 55 23-79 4-82 (167)
209 2qv0_A Protein MRKE; structura 85.8 1.6 5.3E-05 27.7 5.0 80 23-104 8-90 (143)
210 3clk_A Transcription regulator 85.7 4.4 0.00015 29.0 8.0 76 22-104 6-95 (290)
211 2iks_A DNA-binding transcripti 85.7 3.1 0.00011 29.8 7.2 76 22-103 18-106 (293)
212 1t0b_A THUA-like protein; treh 85.4 4.6 0.00016 29.6 8.0 76 40-118 37-120 (252)
213 2fvy_A D-galactose-binding per 85.4 2.7 9.4E-05 30.2 6.7 75 25-104 3-91 (309)
214 2q9u_A A-type flavoprotein; fl 85.3 5.2 0.00018 30.6 8.6 78 24-104 256-348 (414)
215 2vyc_A Biodegradative arginine 85.3 2.3 7.7E-05 36.1 7.0 80 25-106 1-94 (755)
216 4eg0_A D-alanine--D-alanine li 85.2 3.3 0.00011 30.7 7.2 53 22-74 11-71 (317)
217 1s8n_A Putative antiterminator 85.2 2.1 7.2E-05 29.2 5.7 80 22-104 11-92 (205)
218 3qvl_A Putative hydantoin race 85.2 4.1 0.00014 29.8 7.6 89 24-119 1-113 (245)
219 3edo_A Flavoprotein, putative 84.6 2.5 8.5E-05 28.1 5.7 30 23-52 2-34 (151)
220 3b6i_A Flavoprotein WRBA; flav 84.4 3.1 0.0001 28.4 6.3 33 25-57 2-40 (198)
221 3hs3_A Ribose operon repressor 84.4 0.57 2E-05 33.7 2.6 55 22-76 8-75 (277)
222 3eq2_A Probable two-component 84.2 1.4 4.9E-05 33.6 4.9 80 23-104 4-84 (394)
223 2qzj_A Two-component response 84.2 0.77 2.6E-05 29.3 2.9 78 24-104 4-82 (136)
224 2hsg_A Glucose-resistance amyl 83.9 6.5 0.00022 28.8 8.3 76 22-104 58-146 (332)
225 3o1i_D Periplasmic protein TOR 83.9 0.6 2E-05 33.7 2.5 76 23-103 4-93 (304)
226 1dc7_A NTRC, nitrogen regulati 83.9 0.81 2.8E-05 28.1 2.8 79 24-104 3-82 (124)
227 1dbq_A Purine repressor; trans 83.7 3.3 0.00011 29.4 6.5 77 22-103 5-93 (289)
228 2r25_B Osmosensing histidine p 83.7 4.5 0.00015 25.4 6.5 79 24-104 2-88 (133)
229 2x7x_A Sensor protein; transfe 83.4 11 0.00037 27.5 9.4 77 22-103 4-93 (325)
230 3b2n_A Uncharacterized protein 83.1 1.9 6.6E-05 27.1 4.5 78 25-104 4-84 (133)
231 3h5o_A Transcriptional regulat 83.0 7.1 0.00024 28.7 8.2 75 23-103 61-147 (339)
232 1p6q_A CHEY2; chemotaxis, sign 83.0 0.61 2.1E-05 29.1 2.0 80 23-104 5-88 (129)
233 3qk7_A Transcriptional regulat 83.0 5.4 0.00019 28.7 7.4 39 40-78 32-75 (294)
234 1ehs_A STB, heat-stable entero 82.8 0.16 5.6E-06 27.4 -0.7 17 99-115 31-47 (48)
235 3k9c_A Transcriptional regulat 82.5 6 0.0002 28.4 7.5 75 23-104 11-95 (289)
236 3brq_A HTH-type transcriptiona 82.4 9.1 0.00031 27.1 8.4 78 22-104 17-108 (296)
237 3hcw_A Maltose operon transcri 82.2 3 0.0001 30.1 5.8 56 22-77 5-77 (295)
238 2o20_A Catabolite control prot 82.0 6 0.00021 29.0 7.5 56 22-77 61-128 (332)
239 1g8l_A Molybdopterin biosynthe 81.8 5.7 0.00019 31.4 7.6 55 35-92 204-266 (411)
240 1zh2_A KDP operon transcriptio 81.8 0.79 2.7E-05 28.0 2.2 77 25-104 2-79 (121)
241 8abp_A L-arabinose-binding pro 81.8 1.4 4.8E-05 31.8 3.8 74 25-103 3-88 (306)
242 3ksm_A ABC-type sugar transpor 81.7 6.2 0.00021 27.6 7.2 73 26-103 2-90 (276)
243 4hv4_A UDP-N-acetylmuramate--L 81.7 11 0.00039 30.0 9.4 57 22-78 20-91 (494)
244 3huu_A Transcription regulator 81.6 3.9 0.00013 29.6 6.2 76 22-103 20-112 (305)
245 1iow_A DD-ligase, DDLB, D-ALA\ 81.6 3.9 0.00013 29.6 6.2 52 24-75 2-61 (306)
246 3e3m_A Transcriptional regulat 81.5 2.8 9.5E-05 31.3 5.5 75 22-103 68-155 (355)
247 3gbv_A Putative LACI-family tr 81.4 6.3 0.00022 28.0 7.3 55 23-77 7-78 (304)
248 2bmv_A Flavodoxin; electron tr 81.3 2.3 7.8E-05 28.5 4.5 47 25-74 2-50 (164)
249 2dri_A D-ribose-binding protei 81.2 2.3 7.8E-05 30.3 4.7 53 25-77 2-66 (271)
250 3g85_A Transcriptional regulat 80.9 3.2 0.00011 29.6 5.4 77 21-103 8-97 (289)
251 3afo_A NADH kinase POS5; alpha 80.6 0.85 2.9E-05 36.0 2.4 76 24-106 41-148 (388)
252 3h75_A Periplasmic sugar-bindi 80.5 15 0.00051 27.0 9.4 75 24-104 3-93 (350)
253 1tjy_A Sugar transport protein 80.5 2.7 9.2E-05 30.9 5.0 55 23-77 2-69 (316)
254 1i3c_A Response regulator RCP1 80.4 7.1 0.00024 24.9 6.6 79 24-104 8-98 (149)
255 2ioy_A Periplasmic sugar-bindi 80.3 3 0.0001 29.8 5.2 38 40-77 23-66 (283)
256 3cu5_A Two component transcrip 80.2 3.1 0.00011 26.4 4.8 79 24-104 2-84 (141)
257 3fvw_A Putative NAD(P)H-depend 79.8 8.7 0.0003 26.5 7.3 34 24-57 2-41 (192)
258 3d02_A Putative LACI-type tran 79.7 3.8 0.00013 29.3 5.6 76 24-104 4-93 (303)
259 3e61_A Putative transcriptiona 79.7 1.9 6.6E-05 30.6 3.9 73 22-103 6-92 (277)
260 1dz3_A Stage 0 sporulation pro 79.6 2.9 9.9E-05 26.0 4.4 79 24-104 2-84 (130)
261 3o74_A Fructose transport syst 79.5 7.1 0.00024 27.3 6.9 55 24-78 2-68 (272)
262 3jvd_A Transcriptional regulat 79.5 1.3 4.3E-05 33.0 2.9 55 22-77 62-128 (333)
263 3gv0_A Transcriptional regulat 79.1 10 0.00035 27.0 7.7 56 22-77 6-75 (288)
264 3brs_A Periplasmic binding pro 78.8 6.4 0.00022 27.9 6.5 75 24-103 5-96 (289)
265 4fe7_A Xylose operon regulator 78.5 3.2 0.00011 31.8 5.1 74 22-104 23-104 (412)
266 3dbi_A Sugar-binding transcrip 78.5 17 0.00058 26.5 9.7 56 22-77 59-128 (338)
267 1a04_A Nitrate/nitrite respons 78.5 2.7 9.4E-05 28.7 4.3 80 23-104 4-86 (215)
268 1dcf_A ETR1 protein; beta-alph 78.0 1.9 6.6E-05 27.1 3.2 33 22-54 5-37 (136)
269 1qpz_A PURA, protein (purine n 77.9 9.9 0.00034 27.9 7.5 76 22-103 56-144 (340)
270 1ny5_A Transcriptional regulat 77.8 3.2 0.00011 32.1 4.9 78 25-104 1-79 (387)
271 1ag9_A Flavodoxin; electron tr 77.7 10 0.00036 25.5 7.1 78 25-105 1-87 (175)
272 1p2f_A Response regulator; DRR 77.1 2.4 8.1E-05 29.2 3.6 74 24-104 2-78 (220)
273 3n0r_A Response regulator; sig 77.1 4 0.00014 30.1 5.1 78 22-104 158-240 (286)
274 2ohh_A Type A flavoprotein FPR 77.0 10 0.00035 28.7 7.5 82 23-105 255-351 (404)
275 2rjo_A Twin-arginine transloca 76.9 2.5 8.5E-05 31.1 3.9 75 24-103 5-94 (332)
276 1obo_A Flavodoxin; electron tr 76.5 4.9 0.00017 26.8 5.0 78 25-105 2-88 (169)
277 3d8u_A PURR transcriptional re 76.2 4.7 0.00016 28.4 5.1 74 24-103 3-88 (275)
278 3bil_A Probable LACI-family tr 75.5 3.2 0.00011 30.9 4.2 55 23-77 65-131 (348)
279 3t8y_A CHEB, chemotaxis respon 75.3 5.3 0.00018 26.1 4.9 80 24-105 25-106 (164)
280 1t0i_A YLR011WP; FMN binding p 75.3 4.9 0.00017 27.3 4.9 38 68-106 84-125 (191)
281 3miz_A Putative transcriptiona 74.8 6.1 0.00021 28.4 5.5 57 21-77 10-79 (301)
282 3kyj_B CHEY6 protein, putative 74.0 1.6 5.6E-05 27.8 2.0 82 21-104 10-94 (145)
283 4ici_A Putative flavoprotein; 73.6 11 0.00039 25.5 6.4 36 68-104 87-124 (171)
284 3gyb_A Transcriptional regulat 73.3 6.6 0.00023 27.8 5.3 55 22-77 3-68 (280)
285 3dzd_A Transcriptional regulat 73.1 3.2 0.00011 31.9 3.7 78 25-104 1-79 (368)
286 1gud_A ALBP, D-allose-binding 73.0 3.9 0.00013 29.4 4.0 38 40-77 23-68 (288)
287 3d7n_A Flavodoxin, WRBA-like p 71.8 9.6 0.00033 26.1 5.7 81 21-104 3-98 (193)
288 1czn_A Flavodoxin; FMN binding 70.8 6.5 0.00022 26.1 4.5 77 25-104 1-87 (169)
289 1rli_A Trp repressor binding p 69.9 13 0.00045 24.7 6.0 30 25-55 4-36 (184)
290 2h3h_A Sugar ABC transporter, 69.9 17 0.00059 26.1 7.0 60 40-104 22-89 (313)
291 1uz5_A MOEA protein, 402AA lon 69.4 5.7 0.0002 31.3 4.5 56 35-93 207-270 (402)
292 4g65_A TRK system potassium up 69.1 1.7 5.8E-05 34.7 1.4 55 23-79 2-56 (461)
293 1sqs_A Conserved hypothetical 69.0 27 0.00092 24.7 7.8 33 25-57 2-42 (242)
294 3hn7_A UDP-N-acetylmuramate-L- 68.7 43 0.0015 26.8 9.8 56 23-78 18-90 (524)
295 3soz_A ORF 245 protein, cytopl 68.6 5.9 0.0002 29.2 4.1 63 39-103 37-117 (248)
296 1ykg_A SIR-FP, sulfite reducta 68.3 10 0.00034 25.5 5.1 48 25-74 10-62 (167)
297 3c3w_A Two component transcrip 67.5 3.1 0.00011 29.0 2.3 79 25-105 2-83 (225)
298 1e5d_A Rubredoxin\:oxygen oxid 66.7 38 0.0013 25.4 10.0 78 24-101 252-340 (402)
299 2qu7_A Putative transcriptiona 66.6 27 0.00093 24.6 7.4 57 22-78 6-73 (288)
300 2fts_A Gephyrin; gephyrin, neu 66.0 5.5 0.00019 31.5 3.8 54 35-91 208-269 (419)
301 2a6a_A Hypothetical protein TM 65.8 4.9 0.00017 29.0 3.2 46 68-114 66-113 (218)
302 1e2b_A Enzyme IIB-cellobiose; 65.7 10 0.00035 24.0 4.4 50 25-76 4-58 (106)
303 2yxb_A Coenzyme B12-dependent 65.3 17 0.00058 24.6 5.8 55 22-77 16-78 (161)
304 3ezx_A MMCP 1, monomethylamine 65.3 11 0.00036 26.9 4.9 96 22-119 90-200 (215)
305 2h0a_A TTHA0807, transcription 63.9 17 0.00056 25.5 5.7 58 40-104 21-85 (276)
306 1yob_A Flavodoxin 2, flavodoxi 63.7 12 0.00043 25.2 4.9 48 25-74 1-52 (179)
307 1qo0_D AMIR; binding protein, 62.9 13 0.00045 24.8 4.9 75 24-104 12-86 (196)
308 2jk1_A HUPR, hydrogenase trans 62.8 11 0.00039 23.4 4.3 77 25-104 2-79 (139)
309 2i2x_B MTAC, methyltransferase 62.6 39 0.0013 24.5 7.7 95 22-119 121-227 (258)
310 1jr2_A Uroporphyrinogen-III sy 62.4 6.3 0.00021 28.9 3.3 94 20-118 17-135 (286)
311 1t5b_A Acyl carrier protein ph 62.3 32 0.0011 23.0 9.2 33 25-57 2-44 (201)
312 1yt5_A Inorganic polyphosphate 62.0 4.1 0.00014 29.7 2.2 33 67-106 40-73 (258)
313 3klb_A Putative flavoprotein; 61.8 16 0.00054 24.4 5.0 36 68-104 78-115 (162)
314 1jye_A Lactose operon represso 60.1 27 0.00092 25.7 6.5 54 23-76 60-126 (349)
315 3mwd_B ATP-citrate synthase; A 59.9 16 0.00056 28.0 5.3 82 25-107 169-261 (334)
316 3fwz_A Inner membrane protein 59.8 13 0.00044 24.0 4.2 35 22-57 5-39 (140)
317 4hs4_A Chromate reductase; tri 59.6 41 0.0014 23.3 7.8 97 23-120 5-144 (199)
318 3r6m_A YEAZ, resuscitation pro 59.5 6.2 0.00021 28.4 2.7 45 68-113 56-102 (213)
319 3luf_A Two-component system re 59.0 22 0.00075 25.4 5.7 81 22-104 122-206 (259)
320 3llv_A Exopolyphosphatase-rela 58.6 10 0.00035 24.2 3.5 33 24-57 6-38 (141)
321 3lk7_A UDP-N-acetylmuramoylala 58.2 64 0.0022 25.1 9.4 33 23-56 8-40 (451)
322 1w25_A Stalked-cell differenti 57.0 9.6 0.00033 29.4 3.7 78 25-104 2-82 (459)
323 1wcw_A Uroporphyrinogen III sy 56.9 22 0.00076 25.3 5.4 92 21-118 5-112 (261)
324 3ctp_A Periplasmic binding pro 56.8 18 0.00062 26.3 5.0 55 22-77 58-124 (330)
325 1vl0_A DTDP-4-dehydrorhamnose 56.7 15 0.00053 26.1 4.6 64 16-80 4-75 (292)
326 2yq5_A D-isomer specific 2-hyd 56.2 25 0.00085 26.9 5.8 51 25-76 2-53 (343)
327 3bfj_A 1,3-propanediol oxidore 55.9 31 0.0011 26.4 6.4 62 25-87 34-110 (387)
328 2hna_A Protein MIOC, flavodoxi 55.7 13 0.00045 24.1 3.7 46 25-74 2-52 (147)
329 3usb_A Inosine-5'-monophosphat 55.5 72 0.0025 25.6 8.7 54 67-120 317-386 (511)
330 1jg7_A BGT, DNA beta-glucosylt 55.5 28 0.00095 26.0 5.7 58 25-82 1-72 (351)
331 1vi6_A 30S ribosomal protein S 55.4 54 0.0019 23.5 7.8 75 23-104 67-145 (208)
332 1y80_A Predicted cobalamin bin 55.1 48 0.0016 22.9 6.8 54 23-77 87-148 (210)
333 3nbm_A PTS system, lactose-spe 54.8 20 0.00069 22.8 4.4 73 23-104 5-85 (108)
334 1byk_A Protein (trehalose oper 54.7 11 0.00038 26.2 3.4 53 25-77 3-67 (255)
335 3bch_A 40S ribosomal protein S 54.2 37 0.0013 25.2 6.2 75 23-104 103-181 (253)
336 2zkq_b 40S ribosomal protein S 54.2 40 0.0014 25.5 6.5 74 24-104 71-148 (295)
337 1tvm_A PTS system, galactitol- 52.7 41 0.0014 21.2 6.0 53 23-77 20-78 (113)
338 3ibs_A Conserved hypothetical 52.4 15 0.00051 25.1 3.7 50 71-123 115-197 (218)
339 1wu2_A MOEA protein, molybdopt 51.8 15 0.00053 28.7 4.0 42 36-79 212-261 (396)
340 2qh8_A Uncharacterized protein 51.5 43 0.0015 24.0 6.3 72 24-104 8-97 (302)
341 3ius_A Uncharacterized conserv 51.3 45 0.0015 23.5 6.3 57 23-81 4-76 (286)
342 1a2o_A CHEB methylesterase; ba 51.2 22 0.00076 26.9 4.8 78 24-104 3-83 (349)
343 3sho_A Transcriptional regulat 50.7 52 0.0018 21.8 6.6 78 24-105 39-122 (187)
344 3u5c_A 40S ribosomal protein S 50.5 47 0.0016 24.6 6.3 74 24-104 70-147 (252)
345 2fzv_A Putative arsenical resi 50.1 43 0.0015 24.9 6.2 83 22-105 56-169 (279)
346 2vk2_A YTFQ, ABC transporter p 50.1 66 0.0022 22.8 9.9 53 25-77 3-67 (306)
347 2hpv_A FMN-dependent NADH-azor 48.4 61 0.0021 21.9 7.8 33 25-57 2-45 (208)
348 3lft_A Uncharacterized protein 48.3 43 0.0015 23.8 5.8 71 25-104 3-90 (295)
349 1rrm_A Lactaldehyde reductase; 47.4 24 0.00083 27.0 4.5 62 25-87 32-106 (386)
350 3mw8_A Uroporphyrinogen-III sy 47.3 45 0.0015 23.3 5.7 94 24-122 1-100 (240)
351 2gel_A Putative GRAM negative 47.3 24 0.00082 25.3 4.2 43 68-111 55-99 (231)
352 1ccw_A Protein (glutamate muta 45.4 44 0.0015 21.7 5.0 67 38-107 21-93 (137)
353 3iz6_A 40S ribosomal protein S 44.7 65 0.0022 24.5 6.4 30 68-104 122-152 (305)
354 4id9_A Short-chain dehydrogena 44.4 81 0.0028 22.8 6.9 64 18-82 13-91 (347)
355 3rpe_A MDAB, modulator of drug 44.0 46 0.0016 23.7 5.3 55 24-79 25-93 (218)
356 3klo_A Transcriptional regulat 44.0 16 0.00055 25.1 2.8 79 22-104 5-90 (225)
357 1ycg_A Nitric oxide reductase; 44.0 76 0.0026 23.7 6.8 79 24-103 251-341 (398)
358 3rc1_A Sugar 3-ketoreductase; 43.9 52 0.0018 24.6 5.9 66 10-76 11-97 (350)
359 3g79_A NDP-N-acetyl-D-galactos 43.5 78 0.0027 25.3 7.1 54 23-77 352-423 (478)
360 4fx5_A VON willebrand factor t 42.6 35 0.0012 27.0 4.9 53 71-123 183-242 (464)
361 4es6_A Uroporphyrinogen-III sy 42.5 53 0.0018 23.2 5.5 96 22-122 4-111 (254)
362 2l2q_A PTS system, cellobiose- 42.2 60 0.0021 20.1 5.7 51 25-76 5-59 (109)
363 3ox4_A Alcohol dehydrogenase 2 42.0 41 0.0014 25.8 5.1 62 25-87 32-106 (383)
364 3lzd_A DPH2; diphthamide biosy 41.7 62 0.0021 25.3 6.0 59 22-80 262-326 (378)
365 2duw_A Putative COA-binding pr 41.6 46 0.0016 21.8 4.7 34 24-57 13-49 (145)
366 3u7r_A NADPH-dependent FMN red 41.4 85 0.0029 21.6 7.4 99 23-122 1-141 (190)
367 3hr4_A Nitric oxide synthase, 41.3 92 0.0031 22.2 6.6 93 24-118 40-156 (219)
368 2wc1_A Flavodoxin; electron tr 41.2 23 0.0008 23.8 3.2 48 25-74 2-53 (182)
369 3npg_A Uncharacterized DUF364 41.1 53 0.0018 24.0 5.3 49 23-77 115-173 (249)
370 3d8t_A Uroporphyrinogen-III sy 40.7 39 0.0013 24.5 4.6 93 21-119 30-138 (286)
371 2q5c_A NTRC family transcripti 40.6 45 0.0015 23.1 4.7 98 22-120 2-122 (196)
372 3etn_A Putative phosphosugar i 40.6 40 0.0014 23.6 4.5 78 24-105 59-143 (220)
373 1rpn_A GDP-mannose 4,6-dehydra 40.0 29 0.00099 25.1 3.8 39 16-55 6-45 (335)
374 1o2d_A Alcohol dehydrogenase, 40.0 46 0.0016 25.3 5.1 60 25-85 41-114 (371)
375 3l5o_A Uncharacterized protein 39.9 42 0.0014 25.0 4.6 50 22-77 139-195 (270)
376 3ic5_A Putative saccharopine d 39.3 34 0.0012 20.4 3.5 33 23-56 4-37 (118)
377 3f2v_A General stress protein 39.0 14 0.00049 25.8 1.8 68 25-93 2-83 (192)
378 2r85_A PURP protein PF1517; AT 38.9 36 0.0012 24.6 4.2 32 24-57 2-33 (334)
379 3svl_A Protein YIEF; E. coli C 38.3 93 0.0032 21.2 7.8 97 24-121 4-144 (193)
380 3oti_A CALG3; calicheamicin, T 38.0 1.2E+02 0.0041 22.4 7.4 52 22-76 18-74 (398)
381 2zuv_A Lacto-N-biose phosphory 38.0 32 0.0011 29.4 4.0 64 40-104 473-543 (759)
382 2xhz_A KDSD, YRBH, arabinose 5 37.8 45 0.0015 22.1 4.3 77 25-105 50-131 (183)
383 3otg_A CALG1; calicheamicin, T 37.8 52 0.0018 24.3 5.0 58 17-75 13-74 (412)
384 4gi5_A Quinone reductase; prot 37.6 49 0.0017 24.5 4.7 36 22-57 20-62 (280)
385 1y81_A Conserved hypothetical 37.1 84 0.0029 20.3 6.2 53 22-75 12-76 (138)
386 1b93_A Protein (methylglyoxal 36.7 58 0.002 22.1 4.6 48 65-112 79-128 (152)
387 3s2y_A Chromate reductase; ura 42.7 7.4 0.00025 27.2 0.0 34 23-56 5-45 (199)
388 3lkb_A Probable branched-chain 36.0 95 0.0033 22.8 6.2 79 23-104 142-231 (392)
389 2g1u_A Hypothetical protein TM 36.0 73 0.0025 20.5 5.0 35 22-57 17-51 (155)
390 3oa2_A WBPB; oxidoreductase, s 35.8 1.3E+02 0.0044 22.1 8.8 31 23-53 2-32 (318)
391 3j20_B 30S ribosomal protein S 35.8 1E+02 0.0035 21.8 6.0 30 68-104 111-141 (202)
392 3ojo_A CAP5O; rossmann fold, c 35.7 1.3E+02 0.0044 23.7 7.1 54 23-77 314-383 (431)
393 3i6i_A Putative leucoanthocyan 35.5 1.1E+02 0.0036 22.3 6.4 31 24-54 10-40 (346)
394 3l9w_A Glutathione-regulated p 35.4 30 0.001 27.0 3.4 33 24-57 4-36 (413)
395 2x0d_A WSAF; GT4 family, trans 35.3 30 0.001 26.5 3.4 49 9-57 31-88 (413)
396 1yb1_A 17-beta-hydroxysteroid 35.3 53 0.0018 23.3 4.5 42 13-54 20-61 (272)
397 1a4i_A Methylenetetrahydrofola 35.2 1.4E+02 0.0049 22.4 7.7 55 22-77 163-217 (301)
398 1bvy_F Protein (cytochrome P45 34.6 1E+02 0.0035 21.1 5.8 50 23-75 20-74 (191)
399 3czc_A RMPB; alpha/beta sandwi 34.4 52 0.0018 20.5 3.9 50 23-76 17-75 (110)
400 4a5o_A Bifunctional protein fo 34.3 1.5E+02 0.005 22.2 7.5 56 21-77 158-213 (286)
401 2m1z_A LMO0427 protein; homolo 34.1 90 0.0031 19.8 6.7 52 24-77 2-66 (106)
402 3e8x_A Putative NAD-dependent 34.1 73 0.0025 21.7 5.0 60 22-81 19-97 (236)
403 4eys_A MCCC family protein; MC 33.8 1E+02 0.0034 23.4 6.1 63 25-101 246-311 (346)
404 2f48_A Diphosphate--fructose-6 33.8 11 0.00038 31.1 0.6 16 21-36 69-84 (555)
405 3hn2_A 2-dehydropantoate 2-red 33.7 1.4E+02 0.0047 21.8 8.5 87 24-116 2-118 (312)
406 3vtf_A UDP-glucose 6-dehydroge 33.6 1.1E+02 0.0039 24.2 6.5 36 22-57 331-375 (444)
407 4da9_A Short-chain dehydrogena 33.5 55 0.0019 23.5 4.4 45 11-55 16-60 (280)
408 4fzr_A SSFS6; structural genom 33.4 61 0.0021 24.0 4.7 55 19-75 10-69 (398)
409 1lss_A TRK system potassium up 33.1 63 0.0022 19.8 4.2 32 24-56 4-35 (140)
410 3g68_A Putative phosphosugar i 33.1 89 0.0031 23.5 5.7 80 22-105 32-117 (352)
411 3o9z_A Lipopolysaccaride biosy 32.7 1.4E+02 0.0049 21.8 9.2 31 23-53 2-32 (312)
412 1b0a_A Protein (fold bifunctio 32.7 1.5E+02 0.005 22.3 6.7 55 22-77 157-211 (288)
413 3n8k_A 3-dehydroquinate dehydr 32.3 1.1E+02 0.0037 21.4 5.4 38 42-79 64-105 (172)
414 2pv7_A T-protein [includes: ch 32.1 1E+02 0.0034 22.4 5.7 52 23-76 20-73 (298)
415 2kyr_A Fructose-like phosphotr 32.1 1E+02 0.0035 19.8 6.6 52 24-77 5-69 (111)
416 2h4a_A YRAM (HI1655); perplasm 31.8 23 0.0008 26.4 2.1 80 23-105 121-209 (325)
417 3ce9_A Glycerol dehydrogenase; 31.5 51 0.0017 24.8 4.0 74 25-103 35-118 (354)
418 3qq5_A Small GTP-binding prote 31.5 1.7E+02 0.0058 22.8 7.2 87 22-115 316-414 (423)
419 2hig_A 6-phospho-1-fructokinas 31.4 10 0.00035 30.8 0.1 12 24-35 97-108 (487)
420 3c85_A Putative glutathione-re 31.3 59 0.002 21.5 4.0 34 23-57 38-72 (183)
421 3re1_A Uroporphyrinogen-III sy 31.3 1.4E+02 0.0049 21.2 6.9 55 22-77 139-202 (269)
422 3p2o_A Bifunctional protein fo 31.1 1.6E+02 0.0056 21.9 7.7 55 22-77 158-212 (285)
423 3ged_A Short-chain dehydrogena 30.9 1.4E+02 0.005 21.3 6.3 19 37-55 15-33 (247)
424 2ayx_A Sensor kinase protein R 30.9 24 0.00083 24.9 2.0 33 22-54 9-41 (254)
425 3l4b_C TRKA K+ channel protien 30.5 22 0.00076 24.5 1.7 32 25-57 1-32 (218)
426 1id1_A Putative potassium chan 30.4 75 0.0026 20.3 4.3 33 24-57 3-35 (153)
427 1j6u_A UDP-N-acetylmuramate-al 30.4 1.9E+02 0.0066 22.5 8.1 57 22-78 10-81 (469)
428 3jtm_A Formate dehydrogenase, 30.0 1.1E+02 0.0039 23.2 5.8 38 39-76 31-70 (351)
429 3bul_A Methionine synthase; tr 30.0 1E+02 0.0035 25.4 5.8 76 23-101 97-183 (579)
430 3r2g_A Inosine 5'-monophosphat 29.9 1.9E+02 0.0065 22.2 9.4 95 24-120 112-226 (361)
431 2q3e_A UDP-glucose 6-dehydroge 29.8 1.5E+02 0.0051 23.2 6.6 35 23-57 328-371 (467)
432 3hut_A Putative branched-chain 29.7 1.5E+02 0.0053 21.1 6.8 78 23-103 138-226 (358)
433 3gg2_A Sugar dehydrogenase, UD 29.7 1.6E+02 0.0055 23.0 6.8 35 23-57 317-360 (450)
434 3ngx_A Bifunctional protein fo 29.7 1.7E+02 0.0059 21.7 7.0 55 22-77 148-202 (276)
435 2d59_A Hypothetical protein PH 29.4 1.2E+02 0.004 19.7 6.5 51 24-75 22-84 (144)
436 3fro_A GLGA glycogen synthase; 29.2 77 0.0026 23.3 4.7 33 24-56 2-43 (439)
437 2gek_A Phosphatidylinositol ma 29.0 89 0.003 22.8 5.0 36 22-57 18-61 (406)
438 2fcr_A Flavodoxin; electron tr 28.9 68 0.0023 21.2 3.9 76 27-105 2-92 (173)
439 2oho_A Glutamate racemase; iso 28.8 1.6E+02 0.0056 21.2 8.3 77 24-106 12-107 (273)
440 3eua_A Putative fructose-amino 28.7 54 0.0018 24.5 3.7 87 23-113 24-118 (329)
441 3bbn_B Ribosomal protein S2; s 28.6 48 0.0016 24.1 3.3 30 68-104 157-187 (231)
442 3tla_A MCCF; serine protease, 28.2 1.1E+02 0.0038 23.6 5.5 33 68-101 294-331 (371)
443 1jq5_A Glycerol dehydrogenase; 28.2 46 0.0016 25.2 3.3 75 24-103 31-116 (370)
444 3u95_A Glycoside hydrolase, fa 27.9 44 0.0015 26.7 3.2 27 88-115 166-195 (477)
445 3h5t_A Transcriptional regulat 27.9 1.8E+02 0.006 21.2 9.6 56 22-77 66-137 (366)
446 2b99_A Riboflavin synthase; lu 27.7 75 0.0026 21.7 4.0 78 24-101 2-96 (156)
447 3sr3_A Microcin immunity prote 27.4 1.5E+02 0.005 22.4 6.0 69 25-107 232-306 (336)
448 3ha2_A NADPH-quinone reductase 27.4 1.5E+02 0.005 20.1 5.8 54 25-79 1-61 (177)
449 3hno_A Pyrophosphate-dependent 27.3 12 0.00042 29.7 -0.2 47 66-112 102-161 (419)
450 4b4t_W RPN10, 26S proteasome r 27.0 45 0.0016 24.7 2.9 46 71-117 110-164 (268)
451 3r5x_A D-alanine--D-alanine li 26.9 1.1E+02 0.0037 21.9 5.0 52 23-75 2-62 (307)
452 2him_A L-asparaginase 1; hydro 26.8 61 0.0021 25.0 3.7 36 67-102 252-289 (358)
453 2raf_A Putative dinucleotide-b 26.6 1.5E+02 0.0053 20.1 5.9 47 23-75 18-64 (209)
454 1jx6_A LUXP protein; protein-l 26.5 1.8E+02 0.0061 20.8 9.2 55 21-75 40-111 (342)
455 3h5l_A Putative branched-chain 26.5 1.9E+02 0.0064 21.4 6.4 76 23-103 163-252 (419)
456 2amj_A Modulator of drug activ 26.4 1.6E+02 0.0054 20.2 6.6 54 25-79 13-80 (204)
457 3lwz_A 3-dehydroquinate dehydr 26.3 1.6E+02 0.0054 20.1 7.7 56 43-101 44-103 (153)
458 3l07_A Bifunctional protein fo 26.3 2E+02 0.0069 21.4 8.0 55 22-77 159-213 (285)
459 2pzm_A Putative nucleotide sug 26.3 85 0.0029 22.7 4.4 35 20-55 16-51 (330)
460 4amg_A Snogd; transferase, pol 26.2 93 0.0032 22.8 4.6 33 23-56 21-58 (400)
461 2eq5_A 228AA long hypothetical 26.2 1.2E+02 0.0041 20.9 5.0 46 67-119 74-119 (228)
462 3sy8_A ROCR; TIM barrel phosph 26.1 27 0.00092 26.6 1.6 51 24-74 3-55 (400)
463 2rir_A Dipicolinate synthase, 26.0 1.1E+02 0.0039 22.1 5.0 33 23-56 6-38 (300)
464 2hmt_A YUAA protein; RCK, KTN, 25.9 66 0.0022 19.8 3.3 32 24-56 6-37 (144)
465 1oj7_A Hypothetical oxidoreduc 25.8 67 0.0023 24.7 3.9 59 24-85 50-122 (408)
466 2iuy_A Avigt4, glycosyltransfe 25.6 59 0.002 23.4 3.4 20 38-57 37-56 (342)
467 4a26_A Putative C-1-tetrahydro 25.6 2.1E+02 0.0073 21.4 6.5 55 22-77 163-219 (300)
468 3s5p_A Ribose 5-phosphate isom 25.0 88 0.003 21.6 3.9 32 23-54 20-53 (166)
469 3dfz_A SIRC, precorrin-2 dehyd 24.7 1.9E+02 0.0065 20.5 7.7 34 23-57 30-63 (223)
470 3ipc_A ABC transporter, substr 24.7 1.7E+02 0.0059 20.9 5.8 78 23-103 137-225 (356)
471 2yvq_A Carbamoyl-phosphate syn 24.6 1.5E+02 0.0051 19.3 5.5 48 64-113 92-141 (143)
472 3u3x_A Oxidoreductase; structu 24.6 2.2E+02 0.0075 21.2 9.0 55 23-77 25-97 (361)
473 3va7_A KLLA0E08119P; carboxyla 24.6 86 0.0029 28.3 4.7 38 18-56 25-62 (1236)
474 2nrr_A Uvrabc system protein C 24.5 51 0.0017 22.7 2.6 36 68-106 79-114 (159)
475 3tem_A Ribosyldihydronicotinam 24.3 1.2E+02 0.004 21.4 4.7 34 24-57 1-41 (228)
476 4gbj_A 6-phosphogluconate dehy 24.1 80 0.0027 23.2 3.8 34 22-56 3-36 (297)
477 2fp4_A Succinyl-COA ligase [GD 23.9 1.5E+02 0.0051 22.0 5.4 82 25-107 153-248 (305)
478 3knz_A Putative sugar binding 23.9 1.3E+02 0.0045 22.8 5.2 80 22-105 48-132 (366)
479 2h1q_A Hypothetical protein; Z 23.9 1.4E+02 0.0046 22.1 5.1 50 22-77 139-195 (270)
480 3gg9_A D-3-phosphoglycerate de 23.9 54 0.0018 25.1 2.9 8 25-32 3-10 (352)
481 3h11_A CAsp8 and FADD-like apo 23.8 1E+02 0.0036 22.6 4.4 31 26-56 45-75 (272)
482 2xzm_B RPS0E; ribosome, transl 23.8 66 0.0023 23.6 3.3 17 88-104 127-144 (241)
483 3ono_A Ribose/galactose isomer 23.7 63 0.0021 23.3 3.1 33 23-55 2-40 (214)
484 3ief_A TRNA (guanine-N(1)-)-me 23.7 91 0.0031 22.8 3.9 69 24-94 3-77 (233)
485 3k5p_A D-3-phosphoglycerate de 23.7 1E+02 0.0035 24.2 4.6 51 22-76 13-66 (416)
486 3bre_A Probable two-component 23.2 23 0.00079 26.0 0.7 78 25-104 19-100 (358)
487 3ckm_A YRAM (HI1655), LPOA; pe 23.0 61 0.0021 23.5 3.0 79 23-104 123-210 (327)
488 3snr_A Extracellular ligand-bi 22.9 1.8E+02 0.0063 20.6 5.6 79 23-104 134-223 (362)
489 3foj_A Uncharacterized protein 22.8 1.3E+02 0.0043 17.8 5.1 30 23-52 55-84 (100)
490 3p0r_A Azoreductase; structura 22.8 1.2E+02 0.004 20.9 4.4 34 23-56 3-47 (211)
491 4iin_A 3-ketoacyl-acyl carrier 22.7 71 0.0024 22.6 3.3 30 25-54 30-59 (271)
492 1vmd_A MGS, methylglyoxal synt 22.7 1E+02 0.0035 21.5 3.9 49 65-113 95-145 (178)
493 3st7_A Capsular polysaccharide 22.6 1.2E+02 0.0042 22.2 4.7 55 25-81 1-59 (369)
494 3uhj_A Probable glycerol dehyd 22.6 26 0.0009 27.1 0.9 74 25-104 53-137 (387)
495 1ta9_A Glycerol dehydrogenase; 22.4 75 0.0026 25.1 3.6 71 26-103 93-175 (450)
496 4ffl_A PYLC; amino acid, biosy 22.4 1.1E+02 0.0037 22.6 4.4 33 24-57 1-33 (363)
497 2csu_A 457AA long hypothetical 22.4 2.8E+02 0.0096 21.7 8.0 30 22-51 291-320 (457)
498 2vvr_A Ribose-5-phosphate isom 22.4 1.4E+02 0.0049 20.1 4.6 30 25-54 2-33 (149)
499 3uuw_A Putative oxidoreductase 22.3 2.2E+02 0.0075 20.4 6.9 51 24-76 6-74 (308)
500 4b4u_A Bifunctional protein fo 22.3 2.5E+02 0.0087 21.1 7.4 58 19-77 174-231 (303)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.91 E-value=6.5e-24 Score=154.15 Aligned_cols=96 Identities=45% Similarity=0.859 Sum_probs=81.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch---HHHHHHHHhCCCCCEEEE
Q 033201 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~---~~~~~I~~~~~~~PvLGI 103 (125)
|+||||+++|+.++.++|++.|+++++++.++.+.+++...++|||||+||++++.+.. ...+++++++.++|+|||
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI 83 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV 83 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999764455566544799999999999887642 235777777778999999
Q ss_pred chHHHHHHHHhCCeeeeCC
Q 033201 104 CMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~ 122 (125)
|+|||+|+.++||+|.+.+
T Consensus 84 C~G~QlL~~~~gg~v~~~~ 102 (195)
T 1qdl_B 84 CLGHQAIGYAFGAKIRRAR 102 (195)
T ss_dssp THHHHHHHHHTTCEEEEEE
T ss_pred ehHHHHHHHHhCCEEeccC
Confidence 9999999999999998753
No 2
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.90 E-value=9.9e-23 Score=146.89 Aligned_cols=96 Identities=27% Similarity=0.548 Sum_probs=82.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI 103 (125)
|||+|||+++++..++.++|++.|+++++++.+. +.+++...++|||||+||+ ++.+.....++++++ +.++|+|||
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence 5699999999999999999999999999999763 5566654479999999999 776655557888875 788999999
Q ss_pred chHHHHHHHHhCCeeeeCC
Q 033201 104 CMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~ 122 (125)
|+|+|+|+.++||+|.+.+
T Consensus 79 C~G~Q~l~~~~gg~v~~~~ 97 (189)
T 1wl8_A 79 CLGHQLIAKFFGGKVGRGE 97 (189)
T ss_dssp THHHHHHHHHHTCEEEECS
T ss_pred cHHHHHHHHHhCCceecCC
Confidence 9999999999999999864
No 3
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.89 E-value=4.5e-23 Score=149.26 Aligned_cols=96 Identities=33% Similarity=0.663 Sum_probs=78.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc----CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
+||+||||++++++++.++|++.|+++++++.+ .+.+++.. .+.+++||+|||+++.+.+...++++.+++++|+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi 79 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI 79 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence 489999999999999999999999999999876 33344421 2456799999999987765555666667788999
Q ss_pred EEEchHHHHHHHHhCCeeeeC
Q 033201 101 FGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~ 121 (125)
||||+|||+|+.++||++.+.
T Consensus 80 lGIC~G~Qll~~~~Gg~v~~~ 100 (192)
T 1i1q_B 80 IGICLGHQAIVEAYGGYVGQA 100 (192)
T ss_dssp EEETHHHHHHHHHTSCCCCC-
T ss_pred EEECcChHHHHHHhCCEEEeC
Confidence 999999999999999999865
No 4
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.87 E-value=6.1e-22 Score=157.41 Aligned_cols=96 Identities=23% Similarity=0.525 Sum_probs=83.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG 102 (125)
.++|+++|+ +...++.++|+++|+++++++++ .+.+++...++|||||+|||+++.+.....++|+++ +.++|+||
T Consensus 190 ~~~V~viD~--G~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG 266 (379)
T 1a9x_B 190 PFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG 266 (379)
T ss_dssp CEEEEEEES--SCCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred CCEEEEEEC--CChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence 468999999 55688999999999999999976 456677655799999999999998776677889885 77899999
Q ss_pred EchHHHHHHHHhCCeeeeCC
Q 033201 103 VCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~ 122 (125)
||+|||+|+.++||++.+++
T Consensus 267 IClG~QLLa~A~GG~v~k~~ 286 (379)
T 1a9x_B 267 ICLGHQLLALASGAKTVKMK 286 (379)
T ss_dssp ETHHHHHHHHHTTCCEEEEE
T ss_pred ECchHHHHHHHhCcEEEecc
Confidence 99999999999999999864
No 5
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.87 E-value=3.7e-22 Score=167.48 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=91.1
Q ss_pred ccccccccc--cccc-------CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 7 VPISKSLYL--DDKK-------SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 7 ~~~~~~~~~--~~~~-------~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
..+++||+- +... ....+++|+|||++++|++++.+++++.|+++++++++.. .+. .++|||||+||
T Consensus 420 ~~~~~~w~~~~~~~~~~~~~~~~~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~~--~~~DgIIlsGG 495 (645)
T 3r75_A 420 EGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VDL--ARYDVVVMGPG 495 (645)
T ss_dssp TTSCSGGGSCSSCC--------CCSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CCG--GGCSEEEECCC
T ss_pred cccchhhhcccccccccccccccCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--ccc--cCCCEEEECCC
Confidence 568999995 3221 2346789999999999999999999999999999997632 122 37999999999
Q ss_pred CCCcCCchH-----HHHHHHH-hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 78 PGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 78 ~~~~~~~~~-----~~~~I~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|+++++... ..++|++ ++.++|+||||+|||+|+.++||+|.+.+
T Consensus 496 Pg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~ 546 (645)
T 3r75_A 496 PGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRRE 546 (645)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCC
Confidence 999987652 3567777 47789999999999999999999998754
No 6
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.87 E-value=2.7e-22 Score=147.70 Aligned_cols=98 Identities=26% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG-~~~~~~~~~~~~~I~~-~~~~~P 99 (125)
-+.+||+++|++++|..++.++|++.|+++++++++. +.+++. ++|||||+|| |+++++......+.+. .++++|
T Consensus 11 ~~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~P 87 (212)
T 2a9v_A 11 HHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYP 87 (212)
T ss_dssp CCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSC
T ss_pred cccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCC
Confidence 4668999999999999999999999999999998753 455554 5999999999 8888765222122222 267899
Q ss_pred EEEEchHHHHHHHHhCCeeeeCC
Q 033201 100 LFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+||||+|||+|+.++||+|.+.+
T Consensus 88 iLGIC~G~Qll~~~lGg~v~~~~ 110 (212)
T 2a9v_A 88 ILGICVGAQFIALHFGASVVKAK 110 (212)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEE
T ss_pred EEEEChHHHHHHHHhCCEEEcCC
Confidence 99999999999999999998753
No 7
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.85 E-value=5.4e-22 Score=163.12 Aligned_cols=98 Identities=21% Similarity=0.448 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvL 101 (125)
+.++|+|+|++++|.+++.+++++.|..+++++++ .+.+++...++|||||+|||+++++.+.. ...+. ++.++|||
T Consensus 9 ~~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvL 86 (527)
T 3tqi_A 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVL 86 (527)
T ss_dssp CCSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEE
T ss_pred cCCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEE
Confidence 35689999999999999999999999999999875 34455654578999999999988765432 23334 47899999
Q ss_pred EEchHHHHHHHHhCCeeeeCC
Q 033201 102 GVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|||+|||+|+.++||+|.+.+
T Consensus 87 GIC~G~Qlla~~lGG~V~~~~ 107 (527)
T 3tqi_A 87 GICYGMQTMAYQLGGKVNRTA 107 (527)
T ss_dssp EETHHHHHHHHHSSSCBC---
T ss_pred EEChHHHHHHHHcCCeEEeCC
Confidence 999999999999999998764
No 8
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.85 E-value=3.6e-21 Score=159.19 Aligned_cols=98 Identities=21% Similarity=0.408 Sum_probs=81.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH--H-HHHHHHh-CCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--S-LQTVLEL-GPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~--~-~~~I~~~-~~~~P 99 (125)
..+|+|+|++++|++++.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+. . ..+++.+ ++++|
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~P 85 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIP 85 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCC
Confidence 3689999999999999999999999999999975 4566775568999999999999876532 1 2344443 56899
Q ss_pred EEEEchHHHHHHHHhCCeeeeCC
Q 033201 100 LFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+||||+|||+|+.++||+|.+.+
T Consensus 86 vLGIC~G~QlLa~~lGG~V~~~~ 108 (556)
T 3uow_A 86 IFGICYGMQEIAVQMNGEVKKSK 108 (556)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEE
T ss_pred EEEECHHHHHHHHHhCCcEecCC
Confidence 99999999999999999998753
No 9
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=144.91 Aligned_cols=97 Identities=21% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG 102 (125)
+++|+|||++++|..++.++|++.|+++++++.+ .+.+++...++|||||+||+.++++... ..+.++ ++.++|+||
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~-~~~~~~~~~~~~PilG 101 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDA-PWFDPAIFTIGKPVLG 101 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------C-CCCCGGGGTSSCCEEE
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccc-hhHHHHHHHcCCCEEE
Confidence 4689999999999999999999999999999876 3455665457999999999987753221 112233 367899999
Q ss_pred EchHHHHHHHHhCCeeeeCC
Q 033201 103 VCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~ 122 (125)
||+|||+|+.++||+|.+.+
T Consensus 102 IC~G~Qll~~~~GG~v~~~~ 121 (218)
T 2vpi_A 102 ICYGMQMMNKVFGGTVHKKS 121 (218)
T ss_dssp ETHHHHHHHHHTTCCEEEEE
T ss_pred EcHHHHHHHHHhCCceEeCC
Confidence 99999999999999998754
No 10
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.84 E-value=6.7e-21 Score=156.52 Aligned_cols=97 Identities=27% Similarity=0.528 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG 102 (125)
.++|+|+|++++|.+++.++|++.|..+++++++ .+.+++...++|||||+|||+++++.... .+.++ ++.++||||
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvLG 84 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVFG 84 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEEE
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEEE
Confidence 4689999999999999999999999999999976 45667754578999999999988764321 11233 377899999
Q ss_pred EchHHHHHHHHhCCeeeeCC
Q 033201 103 VCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~ 122 (125)
||+|||+|+.++||+|.+.+
T Consensus 85 IC~G~Qlla~~~GG~V~~~~ 104 (525)
T 1gpm_A 85 VCYGMQTMAMQLGGHVEASN 104 (525)
T ss_dssp ETHHHHHHHHHHTCEEECCS
T ss_pred EChHHHHHHHHcCCEEEeCC
Confidence 99999999999999998865
No 11
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.83 E-value=8.4e-21 Score=155.21 Aligned_cols=95 Identities=22% Similarity=0.467 Sum_probs=78.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEc
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC 104 (125)
||+|||++++|.+++.+++++.|..+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC 78 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC 78 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence 48999999999999999999999999999976 46677765578999999999988764321 11233 37789999999
Q ss_pred hHHHHHHHHhCCeeeeCC
Q 033201 105 MGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~ 122 (125)
+|||+|+.++||+|.+.+
T Consensus 79 ~G~Qlla~~~GG~v~~~~ 96 (503)
T 2ywb_A 79 YGMQLLAQELGGRVERAG 96 (503)
T ss_dssp HHHHHHHHTTTCEEECC-
T ss_pred HHHHHHHHHhCCeEeeCC
Confidence 999999999999998764
No 12
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.82 E-value=4.7e-20 Score=137.46 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=74.7
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCc---------hHHHHHHHH
Q 033201 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS---------GISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~---------~~~~~~I~~ 93 (125)
|||++|++.... ...+.+++++.|+++++++.... .+++ ...++|+|||+|||+++.+. ....++|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~ 79 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQK 79 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHH
Confidence 689999875433 46799999999999999886421 1111 11379999999999986431 125678887
Q ss_pred -hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 94 -LGPTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 94 -~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
++.++|+||||+|||+|+.++||+|.+.+
T Consensus 80 ~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~ 109 (236)
T 3l7n_A 80 AAKSEKIIVGVCLGAQLMGVAYGADYLHSP 109 (236)
T ss_dssp HHHTTCEEEEETHHHHHHHHHTTCCCEEEE
T ss_pred HHHcCCCEEEEchHHHHHHHHhCCEEecCC
Confidence 47889999999999999999999998753
No 13
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.81 E-value=4.6e-20 Score=139.35 Aligned_cols=97 Identities=23% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHH-hC
Q 033201 24 KNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LG 95 (125)
Q Consensus 24 ~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~-~~ 95 (125)
+++|++|++.+ +...++.++|++.|+++++++.+... .+++ .++|+|||+|||+++++.. ...++|++ ++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~ 80 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA 80 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHH
Confidence 56899998754 44688999999999999999864211 1123 3799999999999877532 24577777 46
Q ss_pred CCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 96 PTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
.++|+||||+|+|+|+.++||+|.+.+
T Consensus 81 ~~~PvlGIC~G~Qll~~~lGG~V~~~~ 107 (250)
T 3m3p_A 81 QRVPVIGHCLGGQLLAKAMGGEVTDSP 107 (250)
T ss_dssp HTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEECHHHHHHHHHhCCEEEeCC
Confidence 789999999999999999999998764
No 14
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.80 E-value=2.3e-20 Score=157.73 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=72.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~Pv 100 (125)
..+.+|+|+|++++|.+.+.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+.. .+.++ ++.++|+
T Consensus 27 ~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~-~~~~~i~~~g~Pv 104 (697)
T 2vxo_A 27 HYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPV 104 (697)
T ss_dssp --CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CC-CCCGGGTTSSCCE
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccch-hHHHHHHhCCCCE
Confidence 445789999999999999999999999999999986 45667754589999999999988753211 11123 3678999
Q ss_pred EEEchHHHHHHHHhCCeeeeCC
Q 033201 101 FGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
||||+|||+|+.++||+|.+.+
T Consensus 105 LGIC~G~QlLa~~lGG~v~~~~ 126 (697)
T 2vxo_A 105 LGICYGMQMMNKVFGGTVHKKS 126 (697)
T ss_dssp EEEEHHHHHHHHHTTCCBCC--
T ss_pred EEECHHHHHHHHHhCCeEeecC
Confidence 9999999999999999998764
No 15
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.80 E-value=4e-20 Score=134.96 Aligned_cols=93 Identities=16% Similarity=0.298 Sum_probs=68.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHH---HHHHHHh-CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS---LQTVLEL-GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~---~~~I~~~-~~~~ 98 (125)
|.++|+|||++.++..++.++|+++|+++++++. .+++. ++|+||++|+ +++.+.... ..+++.+ +.++
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~----~~~l~--~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISRD----PQVVL--AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHTTCCEEEECC----HHHHH--HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred CCCEEEEEECCCChHHHHHHHHHHCCCEEEEECC----HHHHh--CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCC
Confidence 3568999999999999999999999999998752 45665 6899999754 555443221 2234443 6789
Q ss_pred CEEEEchHHHHHHHHhCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|+||||+|||+|+.++|+++.+..
T Consensus 74 PvlGIClG~QlL~~~~g~~~~~~~ 97 (211)
T 4gud_A 74 PLLGICLGMQLLGKLSEEKGQKAD 97 (211)
T ss_dssp CEEEETHHHHTTSSEECCC----C
T ss_pred CEEEEchhHhHHHHHhCCcccccC
Confidence 999999999999999999887543
No 16
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.79 E-value=3.7e-19 Score=133.09 Aligned_cols=100 Identities=14% Similarity=0.274 Sum_probs=77.2
Q ss_pred CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC-CH-HHHhcCCCCEEEECCCCCCcCCch------HHHHHHH
Q 033201 22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL-TV-EELKRKNPRGVLISPGPGAPQDSG------ISLQTVL 92 (125)
Q Consensus 22 ~~~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~-~~-~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~ 92 (125)
-+.-||++|++.. ....++.+++++.|+++.+++.+.. .. +++ .++|||||+|||.++++.. ...++|+
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~ 87 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 87 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHHHH
Confidence 4567999998754 3456899999999999988775421 11 122 3799999999998887542 2467787
Q ss_pred Hh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201 93 EL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS 123 (125)
Q Consensus 93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~ 123 (125)
++ ++++|+||||+|||+|+.++||+|.+.+.
T Consensus 88 ~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~ 119 (239)
T 1o1y_A 88 EILKKEIPFLGICLGSQMLAKVLGASVYRGKN 119 (239)
T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCCEEECTT
T ss_pred HHHHCCCCEEEEchhHHHHHHHcCCeEecCCC
Confidence 74 67899999999999999999999998653
No 17
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1e-18 Score=125.37 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=66.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH----HHHHHHHhCCCCCE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPL 100 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~----~~~~I~~~~~~~Pv 100 (125)
|||+|+++.+++.. +.++|++.|+++.+++.. +++ .++||||++||++++++... +.+.++ ++++|+
T Consensus 1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~----~~~--~~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi 71 (186)
T 2ywj_A 1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV----EDL--EGIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI 71 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG----GGG--TTCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh----HHh--ccCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence 68999999877765 569999999999888742 234 37899999999876543211 234444 778999
Q ss_pred EEEchHHHHHHHHhCCeee
Q 033201 101 FGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~ 119 (125)
||||+|||+|+.++||++.
T Consensus 72 lGIC~G~Qll~~~~gg~~~ 90 (186)
T 2ywj_A 72 LGTCAGMVLLSKGTGINQI 90 (186)
T ss_dssp EEETHHHHHHSSCCSSCCC
T ss_pred EEECHHHHHHHHHhCCCcC
Confidence 9999999999999999864
No 18
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.71 E-value=4.3e-18 Score=123.01 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=66.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP 99 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~P 99 (125)
|||+|+|+.++|...+ ++|++.|+++.+++.. +++. ++|+||++||+.++.+.. .+.++|+++ ++++|
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 7899999977777654 8999999998887642 3443 699999999976554321 125777774 78899
Q ss_pred EEEEchHHHHHHHHhCCee
Q 033201 100 LFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v 118 (125)
+||||+|+|+|+.++||++
T Consensus 75 ilgIC~G~q~l~~~~gg~~ 93 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSD 93 (196)
T ss_dssp EEEETHHHHHHSBCCC---
T ss_pred EEEECHHHHHHHHHhcCCC
Confidence 9999999999999999965
No 19
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.70 E-value=3.2e-18 Score=126.14 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-
Q 033201 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL- 94 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~- 94 (125)
.+..+++|+|+++.+.|.. +.++|++.|+++.+++.. +++. ++|+|||+||+.++.+. ..+.++|+++
T Consensus 19 ~~~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~ 91 (219)
T 1q7r_A 19 YFQSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFA 91 (219)
T ss_dssp CCCCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHH
Confidence 3345689999998666664 468999999999888742 3443 79999999997654321 1125778774
Q ss_pred CCCCCEEEEchHHHHHHHHhCCeee
Q 033201 95 GPTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
++++||||||+|+|+|+.++||++.
T Consensus 92 ~~~~PilGIC~G~QlL~~~~gg~~~ 116 (219)
T 1q7r_A 92 AAGKPMFGTCAGLILLAKRIVGYDE 116 (219)
T ss_dssp HTTCCEEEETTHHHHHEEEEESSCC
T ss_pred HcCCeEEEECHHHHHHHHHhCCCCc
Confidence 7889999999999999999999763
No 20
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.69 E-value=1.2e-17 Score=121.27 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GP 96 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~~-~~ 96 (125)
+|||+|+|++.+...++.++|++.|+++++++.+ +++ .++|+|||+|| +++.+. ....++|+++ ++
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l--~~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~ 74 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAH--EEADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLER 74 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSC--SSCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHc--ccCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHc
Confidence 4789999987667788999999999999988743 233 37999999663 443221 1246788874 78
Q ss_pred CCCEEEEchHHHHHHHH---hC---------CeeeeCC
Q 033201 97 TVPLFGVCMGLQCIGEA---FG---------GESSKMS 122 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a---~G---------g~v~~~~ 122 (125)
++|+||||+|+|+|+.+ +| |++.+.+
T Consensus 75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~ 112 (200)
T 1ka9_H 75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFR 112 (200)
T ss_dssp TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECC
T ss_pred CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECC
Confidence 89999999999999999 68 7777654
No 21
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.68 E-value=3.6e-17 Score=118.98 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC--------chHHHHHHHHh
Q 033201 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL 94 (125)
Q Consensus 24 ~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~--------~~~~~~~I~~~ 94 (125)
+++|+|+++.+.+. .++.++|++.|+++++++.++ ++ .++|+|||+||+....+ .....++|+++
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA 75 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence 57899999887764 678999999999999987541 22 37999999999653322 12246788874
Q ss_pred -CCCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201 95 -GPTVPLFGVCMGLQCIGEA--FGGESSKMS 122 (125)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~ 122 (125)
++++|+||||+|+|+|+.+ +||+|.+.+
T Consensus 76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~ 106 (213)
T 3d54_D 76 AERGKLIMGICNGFQILIEMGLLKGALLQNS 106 (213)
T ss_dssp HHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence 6789999999999999999 999998764
No 22
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.68 E-value=1e-16 Score=120.69 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCC-Cc--CCc--------------hHHHHHHHHh-CCCC
Q 033201 38 YNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPG-AP--QDS--------------GISLQTVLEL-GPTV 98 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~-~~--~~~--------------~~~~~~I~~~-~~~~ 98 (125)
..+.++++++|..+.++++... ..++.. .++|||||+||++ +| +.. ....++|+++ ++++
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~ 109 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK 109 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCC
Confidence 4578899999999999987521 122222 2799999999986 22 111 1145777774 7899
Q ss_pred CEEEEchHHHHHHHHhCCeeeeC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
|+||||+|||+|+.++||++.+.
T Consensus 110 PiLGIC~G~Qll~~a~Gg~v~~~ 132 (254)
T 3fij_A 110 PIFAICRGMQLVNVALGGTLYQD 132 (254)
T ss_dssp CEEEETHHHHHHHHHTTCCEESS
T ss_pred CEEEECHHHHHHHHHhCCceecc
Confidence 99999999999999999999864
No 23
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.67 E-value=2.7e-17 Score=126.22 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=68.6
Q ss_pred cCCCCCCeEEEE-EC-CCCc-hHHHHHHHHhCCC----eEEEEeCCCC---------CHHH-------HhcCCCCEEEEC
Q 033201 19 KSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEE-------LKRKNPRGVLIS 75 (125)
Q Consensus 19 ~~~~~~~~I~vi-d~-~~~~-~~~i~~~l~~~g~----~~~v~~~~~~---------~~~~-------~~~~~~dgiIi~ 75 (125)
+.++..++|+|| |+ +.+. ..++.++|++.|+ .+.+...+.. +.++ + .++|||||+
T Consensus 20 ~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~dgiil~ 97 (289)
T 2v4u_A 20 FQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL--CKADGILVP 97 (289)
T ss_dssp ---CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH--HHCSEEEEC
T ss_pred hCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH--hhCCEEEec
Confidence 444556799999 76 4455 4578899988764 3455443311 1111 2 268999999
Q ss_pred CCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeee
Q 033201 76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 76 GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
||++++.. ....++++++ +.++|+||||+|||+|+.++||+|.
T Consensus 98 GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~ 141 (289)
T 2v4u_A 98 GGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL 141 (289)
T ss_dssp SCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred CCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence 99887433 3356778875 7789999999999999999999995
No 24
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.65 E-value=8.3e-17 Score=116.61 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=65.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-----CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-H-----HHHHHHH
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-I-----SLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g-----~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~-----~~~~I~~ 93 (125)
|||+|||++.++..++.++|++.| +++++++..+ + .++|+|||+|| +++.+.. . +.++|++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence 689999987777889999999999 8998887531 2 37999999774 4443221 1 3467777
Q ss_pred h-CCCCCEEEEchHHHHHHHHhC
Q 033201 94 L-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 94 ~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
+ ++++|+||||+|||+|+.++|
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEET
T ss_pred HHHcCCeEEEEChhHHHHHHhhc
Confidence 5 778999999999999999996
No 25
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.65 E-value=7e-17 Score=133.38 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=71.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~ 98 (125)
+++.++|++.++.+.+.+.+.+.|+++.+.+.+.. ..++.. .++|||||+|||+++...+ ..++++++ ++++
T Consensus 308 kyv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g-~i~~ir~a~e~~i 385 (550)
T 1vco_A 308 KYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEG-KVRAAQYARERKI 385 (550)
T ss_dssp SCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHH-HHHHHHHHHHTTC
T ss_pred CeEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhh-hHHHHHHHHHCCC
Confidence 44556677777777888888888999988875432 122222 3799999999998875433 35777774 6789
Q ss_pred CEEEEchHHHHHHHHhCCeeeeCC
Q 033201 99 PLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
|+||||+|||+|+.++||++.+++
T Consensus 386 PiLGICLGmQlL~~a~Gg~v~~l~ 409 (550)
T 1vco_A 386 PYLGICLGLQIAVIEFARNVAGLK 409 (550)
T ss_dssp CEEEETHHHHHHHHHHHHHTSCCT
T ss_pred cEEEECcCHHHHHHHhCcccccCC
Confidence 999999999999999999998654
No 26
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.65 E-value=6.9e-16 Score=119.66 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCch------HHHHHHHHh--CC-CCCEEEEchH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQTVLEL--GP-TVPLFGVCMG 106 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~------~~~~~I~~~--~~-~~PvLGIC~G 106 (125)
.++.++|++.|+.+++++.+. +.+++.. .++|||||+||++++.+.. .+.+.+++. .. ++|+||||+|
T Consensus 55 ~~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G 133 (315)
T 1l9x_A 55 ASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLG 133 (315)
T ss_dssp HHHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChH
Confidence 357899999999999998753 3444421 2699999999998875431 133444443 22 6999999999
Q ss_pred HHHHHHHhCCeeee
Q 033201 107 LQCIGEAFGGESSK 120 (125)
Q Consensus 107 ~QlLa~a~Gg~v~~ 120 (125)
||+|+.++||++.+
T Consensus 134 ~Qll~~a~GG~~~~ 147 (315)
T 1l9x_A 134 FEELSLLISGECLL 147 (315)
T ss_dssp HHHHHHHHHSSCCC
T ss_pred HHHHHHHhCCcccc
Confidence 99999999998654
No 27
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=1.3e-16 Score=116.54 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GP 96 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~ 96 (125)
+..+||+|+|+ .++...+.+.|++.|+++.+++.. +++. ++|+|||+||+.+.++.. .+.++|+++ ++
T Consensus 18 ~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~ 90 (208)
T 2iss_D 18 GSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINN 90 (208)
T ss_dssp --CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHC
Confidence 44579999987 344556788999999999888642 3443 699999999853322211 135677774 78
Q ss_pred CCCEEEEchHHHHHHHHhCCe
Q 033201 97 TVPLFGVCMGLQCIGEAFGGE 117 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~Gg~ 117 (125)
++|+||||+|+|+|+.++||+
T Consensus 91 g~PilGIC~G~QlL~~~~gg~ 111 (208)
T 2iss_D 91 GLPVFATCAGVILLAKRIKNY 111 (208)
T ss_dssp TCCEEEETHHHHHHEEEEC--
T ss_pred CCeEEEECHHHHHHHHHcCCC
Confidence 899999999999999999993
No 28
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.62 E-value=1.9e-16 Score=120.60 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=64.8
Q ss_pred CeEEEE-EC----CCCch---HHHHHHHHhCCCeEEEEeCCCCC--------H-HHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVI-DN----YDSFT---YNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vi-d~----~~~~~---~~i~~~l~~~g~~~~v~~~~~~~--------~-~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
.+|+|+ +. .+.|. ..+..+..+.+.++.+++.+... . +.+ .++|||||+||++++... ..
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~-~~ 85 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVD-GK 85 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHH-HH
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCch-hH
Confidence 578888 54 34433 34555555667778887765321 1 123 279999999998764333 34
Q ss_pred HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeee
Q 033201 88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 88 ~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
.++++++ ++++|+||||+|||+|+.++||+|.
T Consensus 86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~ 118 (273)
T 2w7t_A 86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118 (273)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence 5677774 6789999999999999999999985
No 29
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.60 E-value=2.5e-16 Score=112.93 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCC-
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPT- 97 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~- 97 (125)
+++|.|+...+ ...++.++|++.|+++.++++. +++. ++|||||+||+....+. ..+.++|+++ +++
T Consensus 2 ~p~Igi~~~~~-~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (191)
T 2ywd_A 2 RGVVGVLALQG-DFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS 74 (191)
T ss_dssp -CCEEEECSSS-CHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred CcEEEEEecCC-chHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence 46899997654 3457899999999999888743 2343 69999999995321111 1245677774 678
Q ss_pred CCEEEEchHHHHHHHHhCC
Q 033201 98 VPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg 116 (125)
+|+||||+|||+|+.++||
T Consensus 75 ~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 75 LALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp CEEEEETHHHHHHEEEETT
T ss_pred CeEEEECHHHHHHHHHhCC
Confidence 9999999999999999998
No 30
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.59 E-value=2.6e-16 Score=129.88 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=59.0
Q ss_pred HHHHHHHHhCC----CeEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 38 YNLCQYMGELG----YHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 38 ~~i~~~l~~~g----~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
.++.+.|++.| ..+++.+.+. +++. ..++||||++|||+++... ...++++++ ++++|+||||+|
T Consensus 306 ~Si~~aL~~~G~~~~~~V~i~~~d~---e~i~~~~~~~l~~~DGIilsGGpg~~~~~-g~~~~i~~a~~~~~PiLGIClG 381 (545)
T 1s1m_A 306 KSVIEALKHGGLKNRVSVNIKLIDS---QDVETRGVEILKGLDAILVPGGFGYRGVE-GMITTARFARENNIPYLGICLG 381 (545)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEH---HHHHHHCTTTTTTCSEEEECCCCSSTTHH-HHHHHHHHHHHTTCCEEEETHH
T ss_pred HHHHHHHHHhCcccCCeEEEccCCH---HHhhhhhhhhhhcCCEEEECCCCCCccch-hhHHHHHHHHHCCCcEEEECCh
Confidence 34666666655 4566666542 2221 2479999999999987543 345777774 678999999999
Q ss_pred HHHHHHHhCCeeeeCC
Q 033201 107 LQCIGEAFGGESSKMS 122 (125)
Q Consensus 107 ~QlLa~a~Gg~v~~~~ 122 (125)
||+|+.++||++.+++
T Consensus 382 ~Qll~va~Gg~v~~l~ 397 (545)
T 1s1m_A 382 MQVALIDYARHVANME 397 (545)
T ss_dssp HHHHHHHHHHHHHCCT
T ss_pred HHHHHHHhCCceecCC
Confidence 9999999999998654
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.53 E-value=4.9e-15 Score=109.25 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=66.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhC---CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----c--hHHHHHHHHh-
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----S--GISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~---g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~--~~~~~~I~~~- 94 (125)
++|.|++..+.+. ...+.|++. |+++.+++. .+++. ++|+|||+||+.+..+ . ..+.++|+++
T Consensus 4 ~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~ 76 (227)
T 2abw_A 4 ITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFI 76 (227)
T ss_dssp EEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6789998765554 567888888 988877753 34554 6999999999754321 1 2346778774
Q ss_pred CC-CCCEEEEchHHHHHHHHhCCee
Q 033201 95 GP-TVPLFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 95 ~~-~~PvLGIC~G~QlLa~a~Gg~v 118 (125)
++ ++||||||+|+|+|++++||++
T Consensus 77 ~~~g~PilGIC~G~QlL~~~~gg~~ 101 (227)
T 2abw_A 77 HVLKKPIWGTCAGCILLSKNVENIK 101 (227)
T ss_dssp HTSCCCEEEETHHHHHTEEEEECCC
T ss_pred HhcCCEEEEECHHHHHHHHHhcCCc
Confidence 77 8999999999999999999976
No 32
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.52 E-value=4.5e-15 Score=121.73 Aligned_cols=99 Identities=18% Similarity=0.359 Sum_probs=68.5
Q ss_pred CCCCCCeEEEEECC----CCch---HHHHHHHHhCCCeEEEEeCCCCCH--------HHHhcCCCCEEEECCCCCCcCCc
Q 033201 20 SKNNKNPIIVIDNY----DSFT---YNLCQYMGELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 20 ~~~~~~~I~vid~~----~~~~---~~i~~~l~~~g~~~~v~~~~~~~~--------~~~~~~~~dgiIi~GG~~~~~~~ 84 (125)
++...-+|+++.-+ |+|. ..+..+..+.+.++.+.+.+...+ +++ .++||||++||++++..
T Consensus 289 ~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~~- 365 (535)
T 3nva_A 289 NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRGA- 365 (535)
T ss_dssp TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTTH-
T ss_pred CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--cCCCEEEECCCCCCccH-
Confidence 45566789999433 3443 334444455678888877542211 122 37999999999887533
Q ss_pred hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201 85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKM 121 (125)
Q Consensus 85 ~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (125)
....++++++ ++++|+||||+|||+|+.++||+|...
T Consensus 366 ~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~ 403 (535)
T 3nva_A 366 EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGL 403 (535)
T ss_dssp HHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCc
Confidence 2345777774 678999999999999999999999543
No 33
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.48 E-value=1.1e-13 Score=106.99 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEE--EeCCC-C--------------CHHHHhcCCCCEEEECCCCCCcC
Q 033201 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 23 ~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v--~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~~~ 82 (125)
..+||+|++.-... ...+.+.|.....++++ +.... . +++++...+|||+||+|||.+..
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~ 113 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL 113 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence 55899999874432 34566777665555554 33321 1 24455446899999999998665
Q ss_pred Cch------HHHHHHHHh-CCCCCEEEEchHHHHHHHHhCC
Q 033201 83 DSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 83 ~~~------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg 116 (125)
+.+ ++.++++.. ++++|+||||+|+|+++.++||
T Consensus 114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G 154 (301)
T 2vdj_A 114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYG 154 (301)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCC
Confidence 432 234556654 6789999999999997777776
No 34
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.47 E-value=6.8e-15 Score=121.63 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHHh-CC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GP 96 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~~-~~ 96 (125)
+++|+|+|++.++..++.++|++.|+++.+++..+. ..+ .++|||||+|| +++.... .+.++|+++ ++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~~l--~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~ 78 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--FNI--SGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIES 78 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--CCS--TTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--ccc--ccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHc
Confidence 368999998767888999999999999998874311 113 37999999774 3332211 135677774 77
Q ss_pred CCCEEEEchHHHHHHHHh------------CCeeeeCC
Q 033201 97 TVPLFGVCMGLQCIGEAF------------GGESSKMS 122 (125)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~------------Gg~v~~~~ 122 (125)
++|+||||+|||+|+.++ ||+|.+.+
T Consensus 79 g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~ 116 (555)
T 1jvn_A 79 GKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFD 116 (555)
T ss_dssp TCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECC
T ss_pred CCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECC
Confidence 899999999999999998 77887653
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.46 E-value=1.5e-13 Score=106.75 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCCCeEEEEECCCC---chHHHHHHHHhCCCeEEE--EeCCC-C--------------CHHHHhcCCCCEEEECCCCCCc
Q 033201 22 NNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~---~~~~i~~~l~~~g~~~~v--~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~~ 81 (125)
-..+||+|++.-.. +...+.+.|.....++++ +.... . +++++...+|||+||+|||.+.
T Consensus 45 irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~ 124 (312)
T 2h2w_A 45 IRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVEL 124 (312)
T ss_dssp CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTT
T ss_pred CCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCC
Confidence 35589999987543 234577777766655554 43321 1 2444434579999999999865
Q ss_pred CCch------HHHHHHHHh-CCCCCEEEEchHHHHHHHHhCC
Q 033201 82 QDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG 116 (125)
Q Consensus 82 ~~~~------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg 116 (125)
.+.+ ++.++++.. ++++|+||||+|+|+++.++||
T Consensus 125 ~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G 166 (312)
T 2h2w_A 125 LPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYG 166 (312)
T ss_dssp SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred CCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCC
Confidence 5432 234556554 6789999999999997777777
No 36
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=99.10 E-value=2.2e-10 Score=82.07 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=57.5
Q ss_pred HHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 033201 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvL 101 (125)
...+.|++.|++++++..+. ..+++++..+||+|||+||++.. .+.+.+.++++++ ++++||.
T Consensus 26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia 105 (177)
T 4hcj_A 26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA 105 (177)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence 46688999999999876541 23444444579999999997532 2345678899985 7899999
Q ss_pred EEchHHHHHHHH
Q 033201 102 GVCMGLQCIGEA 113 (125)
Q Consensus 102 GIC~G~QlLa~a 113 (125)
+||.|.++|+.+
T Consensus 106 aIC~g~~~La~a 117 (177)
T 4hcj_A 106 GIGSGVVIMANA 117 (177)
T ss_dssp EETTHHHHHHHT
T ss_pred EecccHHHHHHC
Confidence 999999999986
No 37
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.09 E-value=4.5e-10 Score=80.83 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=66.0
Q ss_pred cCCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHhcCCCCEEEECCCCC
Q 033201 19 KSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dgiIi~GG~~ 79 (125)
+...+++||+|+-+.+-.. ..+.+.|++.|+++.++..+... +++....++|+|||+||.+
T Consensus 18 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~ 97 (193)
T 1oi4_A 18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS 97 (193)
T ss_dssp TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred hhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence 3445567899986532222 34678899999999988764211 1122223689999999943
Q ss_pred CcC---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 80 APQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 80 ~~~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
+. ....+.++|+++ ++++||.|||.|.|+|+.+
T Consensus 98 -~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 98 -PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp -HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred -HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 22 234577899985 7899999999999999987
No 38
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.07 E-value=9e-11 Score=104.65 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCC--cCCch-----------H
Q 033201 23 NKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGA--PQDSG-----------I 86 (125)
Q Consensus 23 ~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~--~~~~~-----------~ 86 (125)
.++||+||++++++. ..+.++|++.|+++++++..+. ...++ .++|+||++||... ..... .
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~ 1123 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNHR 1123 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhchh
Confidence 567999999977775 7899999999999988763100 01123 37999999999531 11111 1
Q ss_pred HHHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201 87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 87 ~~~~I~~-~-~~~~PvLGIC~G~QlLa~a 113 (125)
+.+.+++ + .+++|+||||.|+|+|+++
T Consensus 1124 l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1124 VRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 3455666 4 6799999999999999987
No 39
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=99.00 E-value=1.7e-10 Score=85.54 Aligned_cols=88 Identities=9% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHH
Q 033201 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQT 90 (125)
Q Consensus 23 ~~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~ 90 (125)
..+||++|+... ++..++.+.|++.|+++..++..+...+++. ++|+|+++||. ..... .+.+.
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~--~~~~~~~l~~~gl~~~ 105 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGN--TFQLLKESRERGLLAP 105 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSC--HHHHHHHHHHTTCHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCc--HHHHHHHHHHCChHHH
Confidence 457999998753 4556688899999998776643211235564 68999999973 22211 13567
Q ss_pred HHH-hCCCCCEEEEchHHHHHHHHh
Q 033201 91 VLE-LGPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 91 I~~-~~~~~PvLGIC~G~QlLa~a~ 114 (125)
|++ +++++|++|+|.|+|+|+...
T Consensus 106 l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 106 MADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHHHcCCEEEEECHHHHhhcccc
Confidence 776 467899999999999998754
No 40
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.98 E-value=4.6e-10 Score=82.25 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=61.4
Q ss_pred CCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCCCcCCch------HH
Q 033201 24 KNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSG------IS 87 (125)
Q Consensus 24 ~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~~~~~~~------~~ 87 (125)
++||++|+... .+..++.+.|++.|+++++++....+.+ .+. +.|+|+++||. ..... .+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~--~~~l~~~L~~~gl 102 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGN--TFFLLQELKRTGA 102 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSC--HHHHHHHHHHHTH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCC--HHHHHHHHHHCCh
Confidence 58999997433 2557788999999999888754322332 233 68999998873 22211 14
Q ss_pred HHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201 88 LQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
.+.|++ +++++|++|||.|+|+++..
T Consensus 103 ~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 103 DKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred HHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 567777 46789999999999999864
No 41
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.90 E-value=1.6e-09 Score=75.75 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--CC
Q 033201 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD 83 (125)
Q Consensus 24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~--~~ 83 (125)
++||+|+-+. ++. ....+.|++.|+++.++..+.. ++++++..+||.|||+||++.. ..
T Consensus 2 ~~ki~il~~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 80 (168)
T 3l18_A 2 SMKVLFLSAD-GFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL 80 (168)
T ss_dssp CCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred CcEEEEEeCC-CccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc
Confidence 4788888543 332 2366889999999998865421 1233332369999999996421 23
Q ss_pred chHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 84 ~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 81 NEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 44577899985 7899999999999999987
No 42
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.86 E-value=6.7e-09 Score=76.67 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCeEEEEECC----CCch-H---HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHH
Q 033201 24 KNPIIVIDNY----DSFT-Y---NLCQYMGELGYHFEVYRNDEL--------------------------------TVEE 63 (125)
Q Consensus 24 ~~~I~vid~~----~~~~-~---~i~~~l~~~g~~~~v~~~~~~--------------------------------~~~~ 63 (125)
++||+|+-.. +++. . ...+.|++.|+++.++.++.. .+++
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~ 85 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence 3578888541 3442 2 256789999999998875421 1122
Q ss_pred HhcCCCCEEEECCCCCC---cCC----------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC-Ce
Q 033201 64 LKRKNPRGVLISPGPGA---PQD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-GE 117 (125)
Q Consensus 64 ~~~~~~dgiIi~GG~~~---~~~----------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G-g~ 117 (125)
+...+||+|||+||.+. ..+ ...+.++|+++ ++++||.+||.|.++|+.++. |+
T Consensus 86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence 22236999999999653 112 34577899985 789999999999999999976 53
No 43
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.83 E-value=1.3e-08 Score=76.19 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCCeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCC--------------------------------CHH
Q 033201 23 NKNPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDEL--------------------------------TVE 62 (125)
Q Consensus 23 ~~~~I~vid~----~~~~~~----~i~~~l~~~g~~~~v~~~~~~--------------------------------~~~ 62 (125)
+.+||+|+-. ++++.. ...+.|++.|++++++.++.. .++
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~ 101 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE 101 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence 4468988853 244432 356889999999998865421 012
Q ss_pred HHhcCCCCEEEECCCCCCc--------------CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201 63 ELKRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 63 ~~~~~~~dgiIi~GG~~~~--------------~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~ 114 (125)
++...+||+|||+||.+.. ...+.+.++|+++ ++++||.+||.|.++|+.+.
T Consensus 102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 2222369999999996421 1234578899985 78999999999999999987
No 44
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.80 E-value=9.5e-09 Score=74.47 Aligned_cols=90 Identities=11% Similarity=0.068 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCC-----------------CHHHHhcCCCCEEEECCCCCCcC-
Q 033201 24 KNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ- 82 (125)
Q Consensus 24 ~~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dgiIi~GG~~~~~- 82 (125)
++||+|+-+.+... ....+.|++.|++++++.++.. .++++...+||+|||+||...+.
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~ 81 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC 81 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence 46888886533222 2356889999999998875421 23344335799999999964332
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEchHH-HHHHHH
Q 033201 83 --DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (125)
Q Consensus 83 --~~~~~~~~I~~~-~~~~PvLGIC~G~-QlLa~a 113 (125)
....+.++|+++ ++++||.+||.|. ++|+.+
T Consensus 82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 234567899885 7899999999999 999975
No 45
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.79 E-value=1.9e-08 Score=72.18 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC---------------CHHHH-hcCCCCEEEECCCCCCcC
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~---------------~~~~~-~~~~~dgiIi~GG~~~~~ 82 (125)
+++||+|+-+. ++. ..+.+.|++.|+++.++..+.. .+++. ...+||.|||+||+..+.
T Consensus 2 m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~ 80 (197)
T 2rk3_A 2 ASKRALVILAK-GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ 80 (197)
T ss_dssp CCCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHH
T ss_pred CCCEEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHH
Confidence 35688888653 332 2366889999999998865421 23444 335799999999964332
Q ss_pred ---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 83 ---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
..+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 81 ~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 81 NLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 234567899985 7889999999999999987
No 46
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.76 E-value=2.9e-08 Score=70.90 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-CC--------------HHHHhcCCCCEEEECCCCCCc--
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP-- 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dgiIi~GG~~~~-- 81 (125)
+++||+|+-+ +++. ....+.|++.|+++.++.++. .+ +++....+||.|||+||....
T Consensus 4 m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~ 82 (190)
T 4e08_A 4 MSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA 82 (190)
T ss_dssp CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence 4578888855 3443 235689999999999987652 11 334433469999999994222
Q ss_pred -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.....+.++|+++ ++++||.+||.|.++|+.+
T Consensus 83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 83 MGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 1234567899885 7899999999999999986
No 47
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.74 E-value=3.5e-08 Score=70.16 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHhcCCCCEEEECCCCC
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dgiIi~GG~~ 79 (125)
.+++|+|+-+ +++. ..+.+.|++.|+++.++..+.. ++++....+||+|||+||..
T Consensus 8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 3468888854 3442 2356889999999988765421 11222223699999999964
Q ss_pred Cc---CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 80 ~~---~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+ ...+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 33 2345578999985 7899999999999999986
No 48
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.73 E-value=4.5e-08 Score=71.35 Aligned_cols=90 Identities=6% Similarity=-0.035 Sum_probs=62.3
Q ss_pred CCeEEEEECCC---CchHHHHHHHH--------hCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCC
Q 033201 24 KNPIIVIDNYD---SFTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP 78 (125)
Q Consensus 24 ~~~I~vid~~~---~~~~~i~~~l~--------~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~ 78 (125)
++||+|+-+.+ .....+.+.|+ +.+++++++..+.. .+++++..+||.|||+||.
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~ 84 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGT 84 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC
Confidence 45788774322 22345778888 67899988865421 1233333479999999997
Q ss_pred CCcC-CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 79 GAPQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 79 ~~~~-~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.... ..+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 85 TWSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 5322 234578899885 7889999999999999986
No 49
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.71 E-value=2.9e-08 Score=70.75 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred CeEEEEECC---CCchHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc-CCch
Q 033201 25 NPIIVIDNY---DSFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG 85 (125)
Q Consensus 25 ~~I~vid~~---~~~~~~i~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-~~~~ 85 (125)
++|+|+-+. ......+.+.|++ .++++.++..+.. ++++....+||.|||+||.+.. ...+
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 578877332 1222346788888 9999998876421 1222222379999999996421 2234
Q ss_pred HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 86 ~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 467899885 7889999999999999987
No 50
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.70 E-value=4.7e-08 Score=71.25 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=64.1
Q ss_pred CCCeEEEEECC---------CCch----HHHHHHHHhCCCeEEEEeCCCCCH---------------------------H
Q 033201 23 NKNPIIVIDNY---------DSFT----YNLCQYMGELGYHFEVYRNDELTV---------------------------E 62 (125)
Q Consensus 23 ~~~~I~vid~~---------~~~~----~~i~~~l~~~g~~~~v~~~~~~~~---------------------------~ 62 (125)
+++||+|+-.. +++. ....+.|++.|+++.++..+.... +
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLS 83 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChH
Confidence 44688888541 3442 236678999999999987542110 1
Q ss_pred HHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 63 ELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 63 ~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
++...+||+|||+||.+.. .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus 84 ~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 84 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 1112379999999997642 2345678999985 7889999999999999986
No 51
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.67 E-value=7.2e-08 Score=67.77 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCeEEEEECCC--C---chHHHHHHHHhCCCeEEEEeCCC---------------CCHHHH--hcCCCCEEEECCC--C
Q 033201 23 NKNPIIVIDNYD--S---FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P 78 (125)
Q Consensus 23 ~~~~I~vid~~~--~---~~~~i~~~l~~~g~~~~v~~~~~---------------~~~~~~--~~~~~dgiIi~GG--~ 78 (125)
+++||+|+-+.. + +. ..+.+.+.+++++++..+. ..+++. ...+||.||++|| .
T Consensus 1 m~~~v~ill~~~~~g~~~~~--~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~ 78 (175)
T 3cne_A 1 MAKKVAVLAVNPVNGCGLFQ--YLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAV 78 (175)
T ss_dssp -CCEEEEEECSSBCHHHHHH--HHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTG
T ss_pred CCcEEEEEEecCcCCCccch--hhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCc
Confidence 357888886641 3 22 2333337899998887641 122333 2247999999999 5
Q ss_pred CCcC------CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 79 GAPQ------DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 79 ~~~~------~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
..+. ....+.++|+++ ++++||.+||.|.++|+.+
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 79 PVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred ccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 2231 223467889885 7889999999999999987
No 52
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.64 E-value=1.4e-07 Score=68.63 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-------------CHHHHhcCCCCEEEECCCCCCcCCch
Q 033201 24 KNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSG 85 (125)
Q Consensus 24 ~~~I~vid~~~~~----~~~i~~~l~~~-g~~~~v~~~~~~-------------~~~~~~~~~~dgiIi~GG~~~~~~~~ 85 (125)
++||+|+-+ +++ ...+.+.|++. ++++.++..+.. +++++ ..++|.|||+||.+.....+
T Consensus 3 m~kV~ill~-~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~ 80 (206)
T 3f5d_A 3 LKKALFLIL-DQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNK 80 (206)
T ss_dssp CEEEEEECC-SSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCH
T ss_pred ccEEEEEEc-CCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCH
Confidence 457887733 222 23577888887 899988765421 12222 23799999999975333445
Q ss_pred HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 86 ~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 678999985 7899999999999999987
No 53
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.61 E-value=3.9e-08 Score=71.42 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-C--------------CHHHHhcCCCCEEEECCCCCC
Q 033201 20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~ 80 (125)
..++++||+|+-+. ++. ..+.+.|++.|++++++..+. . .++++...+||.|||+||...
T Consensus 5 ~~~m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 5 EQGMSKRILVPVAH-GSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp ----CCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred ccccCCeEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 34466789888553 332 236688999999999887652 1 123332237999999999632
Q ss_pred c---CCchHHHHHHHHh-CCCCCEEEEchHH-HHHHHH
Q 033201 81 P---QDSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (125)
Q Consensus 81 ~---~~~~~~~~~I~~~-~~~~PvLGIC~G~-QlLa~a 113 (125)
+ ...+.+.++|+++ ++++||.+||.|. .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 2 2345578999985 7899999999999 888875
No 54
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.49 E-value=3.6e-07 Score=77.07 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=66.3
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----CCHHHHhcCCCCEEEECCCCCCc----------C
Q 033201 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGAP----------Q 82 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----~~~~~~~~~~~dgiIi~GG~~~~----------~ 82 (125)
-.++||+|+-..+.+. ..+.+.|++.|+.++++.... .++++.+...||+|||+||..+. .
T Consensus 535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr 614 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF 614 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence 3557898884322133 347789999999999997532 12333334579999999996541 1
Q ss_pred CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
..+...++++++ ..+|||..||.|.|+|..+
T Consensus 615 ~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 615 PAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 234578999984 8899999999999999886
No 55
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.44 E-value=3.8e-07 Score=67.40 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=62.3
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-- 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-- 81 (125)
++++|+|+-+ ++|. ..+.+.|+. .++++.++..+.. ++++. .+||.|||+||++..
T Consensus 4 m~~~V~ill~-~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~ 80 (231)
T 3noq_A 4 MAVQIGFLLF-PEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGAL 80 (231)
T ss_dssp CCEEEEEECC-TTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHH
T ss_pred CcEEEEEEEe-CCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhh
Confidence 4578888854 3443 236678887 6888888765411 11222 369999999997532
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
...+.+.++|+++ .++++|.+||.|..+|+.+
T Consensus 81 ~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 81 MEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 2445678999985 8899999999999999986
No 56
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.44 E-value=6.7e-07 Score=70.43 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhcC
Q 033201 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRK 67 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~ 67 (125)
..++||+|+-. +++. ....+.|++.|+++.++.++.. .+++....
T Consensus 203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 281 (396)
T 3uk7_A 203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS 281 (396)
T ss_dssp CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence 45678888854 3443 2366888999999998865311 12333224
Q ss_pred CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 68 ~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
+||.|||+||.+.. ...+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus 282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 79999999996421 2345578899885 7899999999999999987
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.43 E-value=7.3e-07 Score=70.20 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhcCC
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRKN 68 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~ 68 (125)
+++||+|+-. +++. ....+.|++.|++++++.++.. ++++....+
T Consensus 11 ~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 89 (396)
T 3uk7_A 11 NSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89 (396)
T ss_dssp CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred cCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence 3568888854 3443 2366889999999998865421 122222246
Q ss_pred CCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 69 PRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 69 ~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
||.||++||.+.. .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus 90 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp CSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 9999999996421 2345578899885 7899999999999999987
No 58
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.42 E-value=2.1e-07 Score=67.37 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=60.0
Q ss_pred CCeEEEEECCCCchH----HHHHHHHhCC------CeEEEEeCCCC-------------CHHHHhcCCCCEEEECCCCCC
Q 033201 24 KNPIIVIDNYDSFTY----NLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 24 ~~~I~vid~~~~~~~----~i~~~l~~~g------~~~~v~~~~~~-------------~~~~~~~~~~dgiIi~GG~~~ 80 (125)
+++|+|+-+. ++.. .+.+.|+..+ +++.++..+.. ++++....+||.|||+||...
T Consensus 5 ~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~ 83 (202)
T 3gra_A 5 PYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRT 83 (202)
T ss_dssp CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTC
T ss_pred cEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCch
Confidence 4678888553 3322 2456666543 77777765411 122222347999999999764
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
....+.+.++|+++ +++++|.+||-|..+|+.+
T Consensus 84 ~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 84 PLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp CSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 33225678999985 7889999999999999987
No 59
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.42 E-value=3.6e-07 Score=66.41 Aligned_cols=90 Identities=8% Similarity=0.097 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCCCc---hHHHHHHHHhC-------CCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSF---TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~---~~~i~~~l~~~-------g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG 77 (125)
..+++|+|+-+.+-. ...+.+.|+.. ++++.++..+. ..++++ .++|.|||+||
T Consensus 6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpGg 83 (209)
T 3er6_A 6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGSI 83 (209)
T ss_dssp -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence 345678887443211 12355666554 37777765431 122333 37999999999
Q ss_pred CCCc----CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 78 PGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 78 ~~~~----~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.+.. .+.+.+.++|+++ +++++|.+||-|..+|+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 6421 2345678999985 7899999999999999987
No 60
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.40 E-value=2.7e-07 Score=78.45 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=64.4
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--
Q 033201 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-- 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-- 81 (125)
-.++||+|+-. +++. ..+.+.|++.|++++++..... ++++.....||+|||+|| +..
T Consensus 598 i~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~L 675 (753)
T 3ttv_A 598 VKGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADI 675 (753)
T ss_dssp CTTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGT
T ss_pred CCCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHh
Confidence 35578988843 3443 3477899999999998865421 122333336999999999 322
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.......++|+++ ..+|||.+||.|.++|+.|
T Consensus 676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 2345678999985 8899999999999999987
No 61
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.40 E-value=4e-07 Score=71.90 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHhcCCCCEEEECCCCCCc
Q 033201 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dgiIi~GG~~~~ 81 (125)
..+++|+|+-+ ++|. ..+.+.|+..|+++.++..+... +++++..+||.|||+||.+..
T Consensus 8 ~~mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~ 86 (365)
T 3fse_A 8 SGKKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD 86 (365)
T ss_dssp ---CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH
T ss_pred CCceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh
Confidence 34568888854 3443 23668899999999988654211 112222259999999997421
Q ss_pred --CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 --~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.....+.++|+++ .+++||.+||.|..+|+.+
T Consensus 87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 2345578999985 7899999999999999986
No 62
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.36 E-value=6.5e-07 Score=66.87 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------------------------------------HHHHhcCCCCEEEECCCCCCc--
Q 033201 40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAP-- 81 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------------------------------------~~~~~~~~~dgiIi~GG~~~~-- 81 (125)
..+.|++.|+++++..+.... ++++...+||+|+|+||.+..
T Consensus 34 p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~ 113 (244)
T 3kkl_A 34 SFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFD 113 (244)
T ss_dssp HHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhh
Confidence 567899999999988653110 111222369999999997542
Q ss_pred -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.....+.++|+++ ++++||.+||.|..+|+.+
T Consensus 114 l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 114 YPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred cccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 2344577899985 7899999999999999987
No 63
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.36 E-value=4.5e-07 Score=67.29 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=54.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------------------------------------HHHHhcCCCCEEEECCCCCCcC-
Q 033201 40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ- 82 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~------------------------------------~~~~~~~~~dgiIi~GG~~~~~- 82 (125)
..+.|++.|+++++..++... ++++...+||+|||+||.+...
T Consensus 34 p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~ 113 (243)
T 1rw7_A 34 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD 113 (243)
T ss_dssp HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCchhh
Confidence 567889999999988653210 1111123699999999976322
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~ 114 (125)
....+.++|+++ ++++||.+||.|..+|+.+-
T Consensus 114 l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag 148 (243)
T 1rw7_A 114 YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT 148 (243)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence 334577899985 78999999999999999874
No 64
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.36 E-value=8.9e-07 Score=66.47 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=62.3
Q ss_pred CCCeEEEEECCCCch----HHHHHHH-HhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCC-CC--
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYM-GELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP-GA-- 80 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l-~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~-~~-- 80 (125)
++++|+|+-+. ++. ..+.+.| +..|+++.++..+.. .+++.. ..||.|||+||. +.
T Consensus 22 m~~~I~ill~~-gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~ 99 (253)
T 3ewn_A 22 GDEQIAMLVYP-GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA 99 (253)
T ss_dssp CCCEEEEECCT-TBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred CCeEEEEEeCC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence 45788888543 443 2356778 567899988865421 112222 257999999996 42
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
....+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus 100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 22445678999985 8899999999999999987
No 65
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.35 E-value=5.7e-07 Score=67.37 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC-------------------------------------CHHHHhcCCCCEEEECCCCCCc-
Q 033201 40 LCQYMGELGYHFEVYRNDEL-------------------------------------TVEELKRKNPRGVLISPGPGAP- 81 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~-------------------------------------~~~~~~~~~~dgiIi~GG~~~~- 81 (125)
..+.|++.|+++++..+... .++++...+||+|+|+||.+..
T Consensus 40 p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~ 119 (247)
T 3n7t_A 40 PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALY 119 (247)
T ss_dssp HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCSTTHHH
T ss_pred HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCCchhh
Confidence 56789999999998865311 0111122469999999997532
Q ss_pred --CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 --~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.....+.++|+++ ++++||.+||.|.++|+.+
T Consensus 120 ~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 120 DFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 2334577899985 7899999999999999886
No 66
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=98.32 E-value=1.7e-06 Score=66.08 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=54.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-------------------------------HHHH-----hcCCCCEEEECCCCCCcC-
Q 033201 40 LCQYMGELGYHFEVYRNDELT-------------------------------VEEL-----KRKNPRGVLISPGPGAPQ- 82 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~-------------------------------~~~~-----~~~~~dgiIi~GG~~~~~- 82 (125)
..+.|++.|+++.++.++... ++++ ...+||+|||+||.+...
T Consensus 81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~ 160 (291)
T 1n57_A 81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG 160 (291)
T ss_dssp HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence 567889999999998754211 1222 124799999999965431
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~ 114 (125)
....+.++|+++ +++++|.+||.|..+|+.+-
T Consensus 161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 234578899985 78999999999999888764
No 67
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.20 E-value=2.7e-06 Score=71.87 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=65.1
Q ss_pred CCCeEEEEEC-CCCch----HHHHHHHHhCCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCCCCC------------
Q 033201 23 NKNPIIVIDN-YDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA------------ 80 (125)
Q Consensus 23 ~~~~I~vid~-~~~~~----~~i~~~l~~~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG~~~------------ 80 (125)
.++||+|+-. .+++. ..+.+.|++.|++++++..... ++++.+...||+|||+||..+
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~ 607 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPS 607 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCC
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccc
Confidence 4578988844 13443 3477899999999999975321 122333347999999999533
Q ss_pred ----c---CCchHHHHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201 81 ----P---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 81 ----~---~~~~~~~~~I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
+ ...+...+++++ +..+|||..||.|.++|..+
T Consensus 608 ~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 608 AGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 2 134457889998 47899999999999999876
No 68
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=98.17 E-value=1.4e-06 Score=62.67 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHh-----cCCCCEEEECC
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISP 76 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~-----~~~~dgiIi~G 76 (125)
+++||+|+-+ ++|. -...+.|++.|++++++.... ..++++. ..+||+|||+|
T Consensus 3 ~M~kV~ill~-dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG 81 (194)
T 4gdh_A 3 HMVKVCLFVA-DGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG 81 (194)
T ss_dssp --CCEEEEEE-TTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred CCCEEEEEEC-CCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence 4568888854 2442 235678999999887654310 0111211 12589999999
Q ss_pred CCCCcC---CchHHHHHHHHh-C-CCCCEEEEchHHHHHHHH
Q 033201 77 GPGAPQ---DSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 77 G~~~~~---~~~~~~~~I~~~-~-~~~PvLGIC~G~QlLa~a 113 (125)
|...+. +.+.+.++++++ + .++++..||.|.. ++.+
T Consensus 82 G~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 82 GGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred CchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 953322 345578899985 3 5799999999984 4444
No 69
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.17 E-value=4.3e-06 Score=71.00 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc---
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--- 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~--- 81 (125)
.+++|+|+-.. ++. ..+.+.|++.|++++++..... .++++....||+|||+||...+
T Consensus 533 ~~rkVaILl~d-Gfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l 611 (715)
T 1sy7_A 533 KSRRVAIIIAD-GYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL 611 (715)
T ss_dssp TTCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred CCCEEEEEEcC-CCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence 34688888543 332 2366889999999998875421 1122222368999999994322
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
.....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus 612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 2344577899985 789999999999999999943
No 70
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=98.13 E-value=1.1e-06 Score=63.93 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhC--CCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc-
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP- 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~--g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~- 81 (125)
..+||+|+-+. ++. ..+.+.|+.. ++++.++..+.. .+++. ..+|.|||+||++..
T Consensus 3 ~~~~V~ill~~-g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~ 79 (211)
T 3mgk_A 3 LSYRIDVLLFN-KFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTRE 79 (211)
T ss_dssp -CEEEEEECCT-TCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHH
T ss_pred CceEEEEEEeC-CcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhh
Confidence 34678888443 332 2366788876 478877754310 11111 248999999996432
Q ss_pred -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201 82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a 113 (125)
.....+.++|+++ +++++|.+||.|..+|+.+
T Consensus 80 ~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 80 KVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 2345578899985 7889999999999999986
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.85 E-value=1.1e-05 Score=59.84 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=55.7
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCC--CeEEEEeCCC--------------CCHHHHhcCCCCEEEECCC-CCCc-
Q 033201 24 KNPIIVIDNYDSFT----YNLCQYMGELG--YHFEVYRNDE--------------LTVEELKRKNPRGVLISPG-PGAP- 81 (125)
Q Consensus 24 ~~~I~vid~~~~~~----~~i~~~l~~~g--~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG-~~~~- 81 (125)
++||+|+-+ +++. ..+.+.|+..+ +++.++. +. ..+++. .+||.|||+|| ++..
T Consensus 20 ~~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~~ 95 (236)
T 3bhn_A 20 MYKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIPA 95 (236)
T ss_dssp CEEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHHH
T ss_pred CCEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccCHhh
Confidence 457888744 3442 23567787755 6777765 31 112222 36999999999 4421
Q ss_pred -CCchHHHHHHHHhCCCC-CEEEEchHHHHHHHH
Q 033201 82 -QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA 113 (125)
Q Consensus 82 -~~~~~~~~~I~~~~~~~-PvLGIC~G~QlLa~a 113 (125)
...+.+.++| ...+++ +|.+||.|..+|+.+
T Consensus 96 l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 96 ALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred hccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 1344567788 655556 999999999999987
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.62 E-value=0.00095 Score=51.03 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=56.9
Q ss_pred CCeEEEEECCC----CchHHHHHHHHhCCC-eEEEEeCCCC----C---HHHHhcCCCCEEEECCCCCCcC----CchHH
Q 033201 24 KNPIIVIDNYD----SFTYNLCQYMGELGY-HFEVYRNDEL----T---VEELKRKNPRGVLISPGPGAPQ----DSGIS 87 (125)
Q Consensus 24 ~~~I~vid~~~----~~~~~i~~~l~~~g~-~~~v~~~~~~----~---~~~~~~~~~dgiIi~GG~~~~~----~~~~~ 87 (125)
..+|++|-.-. .+...+.+.++++|+ ++++++.... . .+.+ .+.|+|+++||..... ....+
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l--~~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFV--EQCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHH--HHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHH--hcCCEEEECCCCHHHHHHHHHhCCH
Confidence 47999995432 233457788888999 6777765311 1 1122 2689999999843111 11234
Q ss_pred HHHHHH-hCCC-CCEEEEchHHHHHHH
Q 033201 88 LQTVLE-LGPT-VPLFGVCMGLQCIGE 112 (125)
Q Consensus 88 ~~~I~~-~~~~-~PvLGIC~G~QlLa~ 112 (125)
.+.|++ +.++ +|+.|.|-|+-+++.
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 677777 4667 999999999988765
No 73
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=96.08 E-value=0.004 Score=40.33 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=47.9
Q ss_pred cccccccCCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 13 ~~~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
|.++.+..+...++|+++|........+.+.|++.| +++..........+.+....+|.||+--.... .+.-.+.+.+
T Consensus 3 ~~~~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~~~~~~l 81 (135)
T 3snk_A 3 NAINTKVTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD-LLGKPGIVEA 81 (135)
T ss_dssp ----------CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG-GGGSTTHHHH
T ss_pred CcccccccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC-chHHHHHHHH
Confidence 344555555667799999875555667888999999 87765532111111222346898887211000 0111234566
Q ss_pred HHhCCCCCEEEEch
Q 033201 92 LELGPTVPLFGVCM 105 (125)
Q Consensus 92 ~~~~~~~PvLGIC~ 105 (125)
++...+.|++-+.-
T Consensus 82 ~~~~~~~~ii~~s~ 95 (135)
T 3snk_A 82 RALWATVPLIAVSD 95 (135)
T ss_dssp HGGGTTCCEEEEES
T ss_pred HhhCCCCcEEEEeC
Confidence 66544789887764
No 74
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.04 E-value=0.033 Score=35.38 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=48.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
..+++|+++|........+.+.|++.|+.+............+....+|.+|+--.... .+.-.+.+.+++...+.|++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 45679999987555566788899999998765432111122233346999888432111 12223455666655578888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 84 ~~t~ 87 (130)
T 3eod_A 84 VISA 87 (130)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7753
No 75
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=95.71 E-value=0.033 Score=35.88 Aligned_cols=84 Identities=8% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV 98 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~--~~~~~ 98 (125)
...++|+|+|........+.+.|++.|+++..........+.+....+|.||+--. .+... -.+.+.|++ ...+.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCCC
Confidence 44579999987555556788899999998765542111122233457999888322 11112 234455665 34578
Q ss_pred CEEEEchHH
Q 033201 99 PLFGVCMGL 107 (125)
Q Consensus 99 PvLGIC~G~ 107 (125)
|++-+.-..
T Consensus 82 ~ii~~s~~~ 90 (140)
T 3grc_A 82 AIVVVSANA 90 (140)
T ss_dssp EEEEECTTH
T ss_pred CEEEEecCC
Confidence 998877544
No 76
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.68 E-value=0.03 Score=42.50 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG 102 (125)
.|||+++-+.+.....+.++|++.|+++.+.... ...+ .++|.+|..|| ++.+....+.+ .. +|++|
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGG------DGT~L~aa~~~~~~-~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGG------DGTILRILQKLKRC-PPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEEC------HHHHHHHHTTCSSC-CCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECC------CHHHHHHHHHhCCC-CcEEE
Confidence 5789999764433667899999999998765432 1222 26899999999 34455566665 44 99999
Q ss_pred EchH
Q 033201 103 VCMG 106 (125)
Q Consensus 103 IC~G 106 (125)
|=.|
T Consensus 97 IN~G 100 (278)
T 1z0s_A 97 INTG 100 (278)
T ss_dssp EECS
T ss_pred ECCC
Confidence 9876
No 77
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=95.29 E-value=0.027 Score=36.42 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=47.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL 101 (125)
++++|++++........+.+.|++.|+++............+....+|.+|+-- . +... ..+.+.+++...+.|++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~-~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--F-EGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--T-TTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--C-CCCcHHHHHHHHHHHCCCCCEE
Confidence 457899998755556678889999999877543211112223334799988843 1 1111 12344555544578998
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
.+.-
T Consensus 80 ~ls~ 83 (142)
T 2qxy_A 80 VLSA 83 (142)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8763
No 78
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.93 E-value=0.079 Score=34.76 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=49.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
..+++|+|+|........+.+.|++.|+.+............+....+|.||+--. ....+.-.+.+.|++...+.|++
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAH-LPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHCTTSEEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCC-CCcCcHHHHHHHHHhHCCCCeEE
Confidence 45578999987555566788899999988765532111122233457999887322 11111223455566655678888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 91 ~~s~ 94 (153)
T 3hv2_A 91 LLTG 94 (153)
T ss_dssp EECC
T ss_pred EEEC
Confidence 7764
No 79
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=94.92 E-value=0.065 Score=34.36 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=46.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCC-CCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~-~~Pv 100 (125)
..+++|+|+|........+.+.|++.|+.+............+....+|.+| .++ .+.-.+.+.|++. . ..|+
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCccE
Confidence 4567899998755555678888998999876543211111223334789888 222 1112344555555 5 7898
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 90 i~ls~ 94 (137)
T 2pln_A 90 LVSSD 94 (137)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 88763
No 80
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=94.84 E-value=0.061 Score=34.57 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~P 99 (125)
..+++|+|+|........+.+.|++.|+++............+....+|.+|+--.. ...+...+.+.+++ .....|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcccCCCC
Confidence 356789999875555667888999899887654321111122333468888873221 11122234566666 345688
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++.+.
T Consensus 84 ii~~s 88 (142)
T 3cg4_A 84 IVMLT 88 (142)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 81
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.82 E-value=0.096 Score=34.29 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
.+++|+|++........+.+.|++.|+++............+....+|.||+--...+ .+...+.+.|++.....|++-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEE
Confidence 3568999987555566788889989988765432111112233346898887322111 122234555665555789887
Q ss_pred EchH
Q 033201 103 VCMG 106 (125)
Q Consensus 103 IC~G 106 (125)
+.-.
T Consensus 85 ls~~ 88 (154)
T 2rjn_A 85 ISGY 88 (154)
T ss_dssp EECG
T ss_pred EecC
Confidence 7643
No 82
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.77 E-value=0.091 Score=34.63 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh--CCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~--~~~~P 99 (125)
.+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=. .+. +.-.+.+.|++. ..+.|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCCC
Confidence 4578999987555566788899999998765532111122233357999887322 111 222345566654 26789
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 84 ii~~s 88 (154)
T 3gt7_A 84 VILLT 88 (154)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98876
No 83
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=94.68 E-value=0.059 Score=34.91 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~Pv 100 (125)
.+++|+|+|........+.+.|++.|+++............+....+|.||+--.. ...+...+.+.|++ ...+.|+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~~pi 85 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQTASIPV 85 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcccCCCCE
Confidence 45789999876666778889999889877654321111122223469998883221 11122234455555 3457899
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 86 i~ls~ 90 (147)
T 2zay_A 86 IALSG 90 (147)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 87764
No 84
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=94.67 E-value=0.067 Score=32.71 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=46.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC--CCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~--~~~PvL 101 (125)
+++|++++........+.+.|+..|+.+............+....+|.+|+--.. ...+.....+.+++.. .+.|++
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCCCCEE
Confidence 3689999875555667888899999987654321111122233468998874321 1112223455566543 578887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
.+.
T Consensus 80 ~~~ 82 (119)
T 2j48_A 80 LFL 82 (119)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 85
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=94.61 E-value=0.074 Score=33.98 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=47.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC---C-cCCchHHHHHHHHhCCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~---~-~~~~~~~~~~I~~~~~~~P 99 (125)
.++|++++........+.+.|++.|+.+............+....+|.+|+--... . ..+...+.+.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 46899998755556678889988899876543211111223334688888733211 0 1111234455555456789
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
++.+.-
T Consensus 83 ii~ls~ 88 (140)
T 2qr3_A 83 VVLFTA 88 (140)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888763
No 86
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=94.58 E-value=0.054 Score=34.20 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=47.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~--~~~~Pv 100 (125)
+++|+|+|........+.+.|++.|+++............+....+|.||+--. .+... -.+.+.+++. ..+.|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCCE
Confidence 468999987555566788899999987765532111122233357999887322 11122 2345666664 467888
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 81 i~~s 84 (127)
T 3i42_A 81 VAVS 84 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 87
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.54 E-value=0.12 Score=38.54 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=48.1
Q ss_pred CeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCCC----------CCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 25 ~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+|+++|-+.. .....+.++|++.|+++.+.+... ...+... .++|.||..|| ++.+..
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GG------DGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGG------DGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSC------HHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcC------cHHHHH
Confidence 6788885532 123458889999999987653110 0112222 36899999999 444666
Q ss_pred HHHHh-CCCCCEEEEchH
Q 033201 90 TVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC~G 106 (125)
.++.+ ..++|+|||=.|
T Consensus 79 a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 79 AARTLARYDINVIGINRG 96 (292)
T ss_dssp HHHHHTTSSCEEEEBCSS
T ss_pred HHHHhhcCCCCEEEEECC
Confidence 77765 567999999644
No 88
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.48 E-value=0.12 Score=33.31 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
.++|+|+|........+.+.|++.|+.+............+. ...+|.||+--. ....+.-.+.+.+++...+.|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii 81 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK-MPKLSGMDILREIKKITPHMAVI 81 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC-CSSSCHHHHHHHHHHHCTTCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEE
Confidence 468999987555566788899999988765532111112222 347999887332 11112223455566655678888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 82 ~ls~ 85 (143)
T 3jte_A 82 ILTG 85 (143)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7764
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=94.44 E-value=0.16 Score=31.96 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
+++|+|+|........+.+.|+..|+++............+... .+|.+|+--...+..+.-.+.+.+++...+.|++-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899998755555678888998999876543211111223333 68988873221100122234455665555789887
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
+.-
T Consensus 85 ~s~ 87 (132)
T 2rdm_A 85 ISG 87 (132)
T ss_dssp EES
T ss_pred EeC
Confidence 753
No 90
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=94.37 E-value=0.099 Score=34.15 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=45.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
+.+++|+|+|....+...+.+.|++.+....+...... ..+.+....+|.||+--. ....+.-.+.+.|++...+.|
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~ 96 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE-MPVKTGLEVLEWIRSEKLETK 96 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS-CSSSCHHHHHHHHHHTTCSCE
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCe
Confidence 45578999987555556788888887743333332211 112233457999888332 111122234455665455788
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
++-+.-
T Consensus 97 ii~ls~ 102 (150)
T 4e7p_A 97 VVVVTT 102 (150)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887764
No 91
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=94.34 E-value=0.16 Score=32.18 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=47.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
++|+++|........+.+.|++.|+.+. ...........+....+|.+|+--.. +... -...+.+++...+.|++-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCCCCeEEE
Confidence 5899998755556678889999997775 33322112233333479988873221 1122 234556666555788887
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
+.-
T Consensus 80 ~s~ 82 (134)
T 3f6c_A 80 VSA 82 (134)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 92
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=94.33 E-value=0.16 Score=37.93 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCCeEEEEECC--CCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCC
Q 033201 23 NKNPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPT 97 (125)
Q Consensus 23 ~~~~I~vid~~--~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~ 97 (125)
.++|||+|+-. ......+.+.|++.|+++++++..+. +.+++. +||.||+.--..+... ....+.|++ +.++
T Consensus 3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~G 79 (259)
T 3rht_A 3 AMTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERMT-AQAIDQLVTMVKAG 79 (259)
T ss_dssp ---CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGBC-HHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccCC-HHHHHHHHHHHHhC
Confidence 45789999632 12345688899999999999886543 234554 8999999632221122 233456665 3445
Q ss_pred CCEEEE
Q 033201 98 VPLFGV 103 (125)
Q Consensus 98 ~PvLGI 103 (125)
.-++.+
T Consensus 80 GgLi~~ 85 (259)
T 3rht_A 80 CGLVML 85 (259)
T ss_dssp CEEEEE
T ss_pred CeEEEe
Confidence 555555
No 93
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=94.31 E-value=0.1 Score=34.18 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
+++|+|++........+.+.|++.|+++..... ..+. ....+|.+|+--...+ .+...+.+.+++...+.|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~p 77 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS----ATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLP 77 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC----HHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC----HHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCC
Confidence 578999987555566788899999998765432 2222 2346898887432111 122234555665556789
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 78 ii~ls 82 (155)
T 1qkk_A 78 MILVT 82 (155)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 94
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=94.30 E-value=0.076 Score=40.30 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-----------------HHH-----HhcCCCCEEEECC
Q 033201 24 KNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-----------------VEE-----LKRKNPRGVLISP 76 (125)
Q Consensus 24 ~~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~~~-----------------~~~-----~~~~~~dgiIi~G 76 (125)
.++|++|-+..+- ...+.++|++.|+++.+....... ... ....++|.+|..|
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~G 83 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLG 83 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEe
Confidence 3578888664321 245788999999988765322110 110 1123689999889
Q ss_pred CCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 77 GPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 77 G~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
| ++.+...++.+ ..++|++||=.|
T Consensus 84 G------DGT~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 84 G------DGTFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp C------HHHHHHHHHHHHHHTCCEEEEECS
T ss_pred C------CHHHHHHHHHhccCCCCEEEEeCC
Confidence 8 33445555554 346899999665
No 95
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=94.23 E-value=0.081 Score=33.80 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=48.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG 102 (125)
.+++|+|+|........+.+.|++.++.+............+....+|.||+--.... .+.-.+.+.|++.....|++-
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 4578999987555566788889888887766542111112233347999888433111 122234455665556788887
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
+.-
T Consensus 85 ~s~ 87 (137)
T 3hdg_A 85 ISA 87 (137)
T ss_dssp CCC
T ss_pred Eec
Confidence 753
No 96
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=94.15 E-value=0.11 Score=33.25 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPT 97 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~-~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~ 97 (125)
..+++|+|+|........+.+.|++ .|++ +............+....+|.||+--.... .+...+.+.+++ ....
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVG-MDGFSICHRIKSTPATAN 84 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTT-SCHHHHHHHHHTSTTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCC-CcHHHHHHHHHhCccccC
Confidence 3467899998755555678888988 8998 555432111122233346899888432111 122234455555 3457
Q ss_pred CCEEEEc
Q 033201 98 VPLFGVC 104 (125)
Q Consensus 98 ~PvLGIC 104 (125)
.|++.+.
T Consensus 85 ~~ii~~s 91 (143)
T 3cnb_A 85 IIVIAMT 91 (143)
T ss_dssp SEEEEEE
T ss_pred CcEEEEe
Confidence 8988775
No 97
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=94.10 E-value=0.28 Score=34.02 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=46.8
Q ss_pred CCeEEEEEC-CCCchHH----HHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh-C
Q 033201 24 KNPIIVIDN-YDSFTYN----LCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL-G 95 (125)
Q Consensus 24 ~~~I~vid~-~~~~~~~----i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~-~ 95 (125)
+|+|++|-. ..+.+.. +.+.+++ .|.++++++..+.+.+++. ++|+||+ |.|---.. ...+..++.++ .
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGG
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhh
Confidence 467888843 2234444 4445566 7888999887655556665 6899998 55432222 23455666653 1
Q ss_pred ------CCCCEEEEch
Q 033201 96 ------PTVPLFGVCM 105 (125)
Q Consensus 96 ------~~~PvLGIC~ 105 (125)
.++|+.-++.
T Consensus 81 ~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 81 DLWGEIDGKIACAFSS 96 (188)
T ss_dssp GTTTSCTTCEEEEEEE
T ss_pred hhHHHhCCCeEEEEEE
Confidence 5677654443
No 98
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=93.98 E-value=0.22 Score=31.21 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+...|++.|+++..........+.+....+|.+|+-=. .|...+ .+.+.+++ ..+.|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~ 78 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence 468999987544556678889989998765432111112233457998887221 121122 23344444 34688887
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
+.-
T Consensus 79 ~t~ 81 (120)
T 3f6p_A 79 LTA 81 (120)
T ss_dssp EEE
T ss_pred EEC
Confidence 653
No 99
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=93.97 E-value=0.11 Score=34.32 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHhcC--CCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~~~~~~~~~~~~--~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P 99 (125)
++++|+|+|........+.+.|++.|+++. .........+.+... .+|.||+--.. .-.+.-.+.+.|++...+.|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhCCCCc
Confidence 446899998755555678888999998875 332111111222233 68988883321 11122234566666556789
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
++-+.-
T Consensus 114 ii~ls~ 119 (157)
T 3hzh_A 114 VIMISA 119 (157)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 887764
No 100
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=93.95 E-value=0.072 Score=33.21 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=45.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvL 101 (125)
.++|++++........+.+.|++.|+++............+....+|.+|+--...+..+...+.+.+++. ..+.|++
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii 84 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIV 84 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEE
Confidence 45899998755556678888988899876543211111222234689888732210011112345666654 4678988
Q ss_pred EE
Q 033201 102 GV 103 (125)
Q Consensus 102 GI 103 (125)
-+
T Consensus 85 ~~ 86 (127)
T 2gkg_A 85 II 86 (127)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 101
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.83 E-value=0.013 Score=41.00 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC-------------HHHHhcCCCCEEEECCCCCCcC---Cc
Q 033201 24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT-------------VEELKRKNPRGVLISPGPGAPQ---DS 84 (125)
Q Consensus 24 ~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~~-------------~~~~~~~~~dgiIi~GG~~~~~---~~ 84 (125)
..+|+++...+-+ .+.+...+|. -+...+|..+.. ..+....++|.+||.||-..|. +.
T Consensus 26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~ 103 (157)
T 2r47_A 26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDI 103 (157)
T ss_dssp CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCH
T ss_pred CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCCH
Confidence 6789999765433 3334444455 466666643110 0011114789999999966654 44
Q ss_pred hHHHHHHHHh-CCCCCEEEEch
Q 033201 85 GISLQTVLEL-GPTVPLFGVCM 105 (125)
Q Consensus 85 ~~~~~~I~~~-~~~~PvLGIC~ 105 (125)
+...++|.++ +....+.|||+
T Consensus 104 e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 104 EDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCEEEEEh
Confidence 5677888886 44567999998
No 102
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=93.82 E-value=0.17 Score=35.60 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchH
Q 033201 24 KNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 24 ~~~I~vid~~---------~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~ 86 (125)
.+|+.||--+ ++....+.++|++.|+++..+. .| +.+.+ .. .++|.||.+||.+ +...+.
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g-~~~~D~ 79 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG-PTFDDM 79 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS-SSTTCC
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc-CCcccc
Confidence 3677777322 3445568899999999876432 23 22222 11 2589999999965 333332
Q ss_pred HHHHHHH-hCCCCCEEEEchHHHHHHHHhC
Q 033201 87 SLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 87 ~~~~I~~-~~~~~PvLGIC~G~QlLa~a~G 115 (125)
..+.+.+ +. +++.+.=--.+.|-..|+
T Consensus 80 T~ea~a~~~~--~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 80 TVEGFAKCIG--QDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHHHHHHT--CCCEECHHHHHHHHHHHC
T ss_pred hHHHHHHHcC--CCeeeCHHHHHHHHHHHc
Confidence 3344444 34 333333333444544444
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=93.81 E-value=0.12 Score=33.01 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEE-EeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v-~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
..+++|+|++........+.+.|++.|+++.. ..........+....+|.+|+--....-.+...+.+.+++. ...|+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 35678999987555556788889888998763 43211111222334689988842210001222344555555 67898
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 86 i~ls~ 90 (140)
T 3cg0_A 86 IFITS 90 (140)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87763
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=93.80 E-value=0.11 Score=33.22 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=45.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P 99 (125)
..+++|+++|........+.+.|++.|+.+............+.. ..+|.+|+--. .+...+ .+.+.+++...+.|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCC
Confidence 566789999875555667888899889877544321111122233 46898887322 111122 23334443334688
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 91 ii~ls 95 (138)
T 2b4a_A 91 VLILT 95 (138)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 105
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=93.78 E-value=0.21 Score=31.47 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc-------CCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~-------~~~dgiIi~GG~~~~~~~~~~~~~I~~~ 94 (125)
+++|+++|........+.+.|++.|+ .+............+.. ..+|.+|+--.... .+.-.+.+.+++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHHcC
Confidence 57899998755556678899999998 55444321111122232 46899888433111 1222344555553
Q ss_pred C--CCCCEEEEch
Q 033201 95 G--PTVPLFGVCM 105 (125)
Q Consensus 95 ~--~~~PvLGIC~ 105 (125)
. .+.|++-+.-
T Consensus 81 ~~~~~~pii~ls~ 93 (140)
T 1k68_A 81 PTLKRIPVVVLST 93 (140)
T ss_dssp TTGGGSCEEEEES
T ss_pred cccccccEEEEec
Confidence 3 5789888764
No 106
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=93.74 E-value=0.17 Score=32.05 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~PvL 101 (125)
++++|+|+|........+...|+..|+.+............+....+|.+|+--. .+. +.-.+.+.+++.....|++
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL 79 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEE
Confidence 4568999987554556678888888988754432101112222336898887322 111 1123445565544568888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 80 ~~s~ 83 (136)
T 1mvo_A 80 MLTA 83 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7753
No 107
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=93.71 E-value=0.15 Score=36.37 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=37.0
Q ss_pred ccccccccccc---cCCCCCCeEEEEEC--------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h---cC
Q 033201 8 PISKSLYLDDK---KSKNNKNPIIVIDN--------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK 67 (125)
Q Consensus 8 ~~~~~~~~~~~---~~~~~~~~I~vid~--------~~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~---~~ 67 (125)
..|+.-||=-- ++....+||.||-- .|++...+..+|++.|+++..+. .|+ .+.+ . ..
T Consensus 11 ~~~~~g~~~~~~~~~~~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~ 88 (185)
T 3rfq_A 11 QLSDLGYSVAPMEQGAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIG 88 (185)
T ss_dssp ------------------CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHT
T ss_pred hhhhhhhhhcccccccCCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhC
Confidence 34444444332 33346678888832 45556678899999998876432 232 2222 1 14
Q ss_pred CCCEEEECCCCC
Q 033201 68 NPRGVLISPGPG 79 (125)
Q Consensus 68 ~~dgiIi~GG~~ 79 (125)
++|.||.+||.+
T Consensus 89 ~~DlVIttGGts 100 (185)
T 3rfq_A 89 GVDLVVSVGGTG 100 (185)
T ss_dssp TCSEEEEESCCS
T ss_pred CCCEEEECCCCC
Confidence 799999999965
No 108
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=93.65 E-value=0.32 Score=29.87 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=45.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI 103 (125)
++|+++|........+.+.|++.|+.+............+....+|.+++-=. .+... ....+.+++...+.|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence 47999987555556788889888988764432111112223346898887322 12112 2345556655556788766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 80 s 80 (116)
T 3a10_A 80 T 80 (116)
T ss_dssp E
T ss_pred E
Confidence 4
No 109
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=93.59 E-value=0.24 Score=31.86 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
.+++|+|+|........+.+.|++.|+++............+.. ..+|.||+--....-.+.-.+.+.+++. .+.|++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEE
Confidence 34789999875555667889999999987654321111222333 4689888732210001222344555554 568888
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 83 ~ls 85 (140)
T 3h5i_A 83 FLT 85 (140)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 110
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=93.58 E-value=0.27 Score=30.88 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=45.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv 100 (125)
+++|+++|........+...|++.|+++..........+.+....+|.+|+-=. .|...+ .+.+.+++. ..+.|+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence 468999986544556677888989998765432111122233357898887321 122222 234455542 256899
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 80 i~~s 83 (122)
T 3gl9_A 80 IVLT 83 (122)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8776
No 111
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=93.55 E-value=0.14 Score=32.67 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=46.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCCcCCc-hHHHHHHHHh-CCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDS-GISLQTVLEL-GPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~~~~~-~~~~~~I~~~-~~~~P 99 (125)
.+++|+|+|........+.+.|++.|+++............+.... +|.||+--. . +... -.+.+.|++. ....|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l-~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR-M-QPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC-C-SSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc-C-CCCCHHHHHHHHHhcCCCCCC
Confidence 4578999987555566788899999998866532111111222234 888887322 1 1112 2234555554 35688
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
++-+.-
T Consensus 84 ii~~s~ 89 (136)
T 3hdv_A 84 IIVVSG 89 (136)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887764
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=93.35 E-value=0.28 Score=35.52 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=49.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
..+++|+++|........+.+.|++.|+++..........+.+....+|.||+-=. +...+.-...+.|++.....||+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~-mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN-MPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES-SCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCCCcEE
Confidence 45578999987555556688889989998765543211122233346898886211 11112223556676654579999
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
.+.-
T Consensus 206 ~lt~ 209 (254)
T 2ayx_A 206 GVTA 209 (254)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8864
No 113
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=93.33 E-value=0.057 Score=34.27 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
...+++|+++|........+.+.|++.|+.+............+....+|.||+
T Consensus 3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 3 LKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 345679999987555566788899999998765532111122233457898887
No 114
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.31 E-value=0.17 Score=32.62 Aligned_cols=81 Identities=9% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHH--hCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE--LGPT 97 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~--~~~~ 97 (125)
.+++|+|+|........+.+.|++.|+...+...... ....+....+|.||+--. .+. +.-.+.+.|++ ...+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence 3468999987555556788899999988544443211 112233357898888322 111 11234455555 3457
Q ss_pred CCEEEEch
Q 033201 98 VPLFGVCM 105 (125)
Q Consensus 98 ~PvLGIC~ 105 (125)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (144)
T 3kht_A 82 TPIVILTD 89 (144)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 89998873
No 115
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=93.28 E-value=0.23 Score=34.50 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
+++|+++|........+...|+..|+++............+....+|.+|+--. .+...+ .+.+.+++...+.|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 578999987555556788889888988764432111112223347898887322 122122 34455565445789987
Q ss_pred Ech
Q 033201 103 VCM 105 (125)
Q Consensus 103 IC~ 105 (125)
+.-
T Consensus 80 ls~ 82 (225)
T 1kgs_A 80 LTA 82 (225)
T ss_dssp EES
T ss_pred EeC
Confidence 763
No 116
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=93.23 E-value=0.13 Score=32.99 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCc-C-CchHHHHHHHH--hCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-Q-DSGISLQTVLE--LGP 96 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~-~-~~~~~~~~I~~--~~~ 96 (125)
.+++|+|+|........+...|++ .|+++............+.. ..+|.||+-=. .+ . +.-.+.+.|++ ...
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence 357899998755555678888988 89988754321111112233 46898887321 11 1 11124455666 456
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
+.|++-+.-
T Consensus 81 ~~~ii~ls~ 89 (140)
T 3lua_A 81 NTPVIIATK 89 (140)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 789987763
No 117
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=93.21 E-value=0.048 Score=35.09 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=44.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcC--Cch-HHHHHHHHh
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DSG-ISLQTVLEL 94 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~--~~~-~~~~~I~~~ 94 (125)
...++|+|+|........+.+.|++.|+++.... +..+. ....+|.||+-=. .+. ..+ .+.+.+++.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~----~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFA----SAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKR 77 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEES----SHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC----CHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhC
Confidence 3457899998755555678888998899876543 22332 2235888877221 111 111 234555554
Q ss_pred CCCCCEEEEch
Q 033201 95 GPTVPLFGVCM 105 (125)
Q Consensus 95 ~~~~PvLGIC~ 105 (125)
..+.|++-+.-
T Consensus 78 ~~~~~ii~~s~ 88 (136)
T 3kto_A 78 GFHLPTIVMAS 88 (136)
T ss_dssp TCCCCEEEEES
T ss_pred CCCCCEEEEEc
Confidence 56789887753
No 118
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=93.20 E-value=0.2 Score=31.27 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=45.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+.+.|++.|+.+............+....+|.+++-=. .+... ..+.+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEE
Confidence 468999987555556678888888988754331101112222336898887221 11112 234455555555788887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ~s 82 (124)
T 1srr_A 81 MT 82 (124)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 119
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.09 E-value=0.16 Score=37.80 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=42.8
Q ss_pred CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 033201 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT 97 (125)
Q Consensus 25 ~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~--~~ 97 (125)
||++++-+.... ...+.++|++.|+++. ..++|.||..|| ++.+....+.+ . .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGG------DGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGG------DGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEES------HHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcC------cHHHHHHHHHHhhcCCC
Confidence 578888764322 1346677888888761 136899999999 34455666665 3 38
Q ss_pred CCEEEEchH
Q 033201 98 VPLFGVCMG 106 (125)
Q Consensus 98 ~PvLGIC~G 106 (125)
+|++||=.|
T Consensus 62 ~PilGIn~G 70 (272)
T 2i2c_A 62 IAFIGIHTG 70 (272)
T ss_dssp CEEEEEESS
T ss_pred CCEEEEeCC
Confidence 999999665
No 120
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=92.98 E-value=0.44 Score=29.34 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=44.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+++|........+.+.|+..|+.+............+....+|.+++--. .+...+ ...+.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47899986544556678888888988765432111112223346898887322 122222 234555554456888877
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 s 79 (121)
T 2pl1_A 79 T 79 (121)
T ss_dssp E
T ss_pred e
Confidence 4
No 121
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.84 E-value=0.24 Score=31.70 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc----------CCCCEEEECCCCCCcCCch-HHH
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSG-ISL 88 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~----------~~~dgiIi~GG~~~~~~~~-~~~ 88 (125)
.++++|+++|........+.+.|++.|+ .+............+.. ..+|.+|+--.. +...+ .+.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~ 81 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PGTDGREVL 81 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SSSCHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CCCCHHHHH
Confidence 4567899998755556678889999988 55544321111222232 468988884321 11122 233
Q ss_pred HHHHHhC--CCCCEEEEch
Q 033201 89 QTVLELG--PTVPLFGVCM 105 (125)
Q Consensus 89 ~~I~~~~--~~~PvLGIC~ 105 (125)
+.|++.. ...|++-+.-
T Consensus 82 ~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHHTTSTTGGGSCEEEEES
T ss_pred HHHHhCcccCCCeEEEEeC
Confidence 4444422 5688887753
No 122
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=92.83 E-value=0.32 Score=30.84 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+...|+..|+.+............+....+|.+|+-=. .+...+ .+.+.+++...+.|++-
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999987555556788888888998764432111112223346898887322 122222 24455665455788887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ~s 82 (132)
T 3crn_A 81 VT 82 (132)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 123
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=92.74 E-value=0.87 Score=34.57 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred CCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 23 NKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 23 ~~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
+.+|++||-|..+- ...+.++|++.|+++.+...... ...+ .....+|.||+.|| ++.+.+.
T Consensus 23 ~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG------DGTv~~v 96 (337)
T 2qv7_A 23 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG------DGTLNEV 96 (337)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC------HHHHHHH
T ss_pred ccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC------chHHHHH
Confidence 34568888664332 13477888889999887764321 1112 22246899999999 3444555
Q ss_pred HHHh---CCCCCEEEEchHH-HHHHHHhC
Q 033201 91 VLEL---GPTVPLFGVCMGL-QCIGEAFG 115 (125)
Q Consensus 91 I~~~---~~~~PvLGIC~G~-QlLa~a~G 115 (125)
++.+ ..++|+.+|=.|- -.+|+.+|
T Consensus 97 ~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 97 VNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp HHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 5554 4567888876553 23444443
No 124
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=92.74 E-value=0.31 Score=31.72 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=45.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
+++|+++|........+.+.|++ .|+.+...-.+.. ....+....+|.||+--... ..+...+.+.+++.....|++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii 83 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAARIL 83 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCeEE
Confidence 46899998755556678888887 6877652222211 11223334689988833211 112223455666655578888
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 84 ~ls 86 (153)
T 3cz5_A 84 IFT 86 (153)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 125
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=92.74 E-value=0.48 Score=32.80 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=35.9
Q ss_pred CCCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH--------hcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL--------KRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~--------------~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~--------~~~~~dgiIi~GG 77 (125)
....|++||--. |.....+.++|++.|+++.-+. .|+ .+.+ ...++|.||.+||
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 345688888432 3334568899999999875432 232 2221 1246899999999
Q ss_pred CC
Q 033201 78 PG 79 (125)
Q Consensus 78 ~~ 79 (125)
.+
T Consensus 91 ~g 92 (178)
T 3iwt_A 91 TG 92 (178)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 126
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=92.61 E-value=0.38 Score=30.24 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=44.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~--~~~~P 99 (125)
..++|+|+|........+...|+ .|+++............+....+|.||+--. .+... -.+.+.+++. ..+.|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCccCCCC
Confidence 35789999875444556777777 7888765532111122233457999888332 12222 2345556653 34789
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
++-+.-
T Consensus 80 ii~~s~ 85 (133)
T 3nhm_A 80 VIFVSG 85 (133)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887753
No 127
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=92.59 E-value=0.17 Score=37.37 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC----C--CCHHHHhcCCCCEEEECCCCCCcCC-----------chHHHHHHHHh-CCCCC
Q 033201 38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-----------SGISLQTVLEL-GPTVP 99 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~----~--~~~~~~~~~~~dgiIi~GG~~~~~~-----------~~~~~~~I~~~-~~~~P 99 (125)
..+.+.|+..++++++++.. . .+.+++. +||.||+.+-+.+... .+...+.|+++ .++..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 46888999999999988421 1 1234454 7999999875432111 02235777774 66899
Q ss_pred EEEE
Q 033201 100 LFGV 103 (125)
Q Consensus 100 vLGI 103 (125)
+++|
T Consensus 121 ll~i 124 (256)
T 2gk3_A 121 LLMI 124 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 128
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=92.59 E-value=0.13 Score=35.82 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHHhCCCeEE---EEeCCCCCHHH-Hh---cCCCCEEEECCCCC
Q 033201 23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFE---VYRNDELTVEE-LK---RKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~---v~~~~~~~~~~-~~---~~~~dgiIi~GG~~ 79 (125)
..+||.||-- .|++...+..+|++.|+++. +++.+ ....+ +. ..++|.||.+||.+
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3568888832 34556678899999999874 44432 21111 21 13699999999965
No 129
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=92.58 E-value=0.55 Score=29.31 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
..+|+++|........+...|+..|+.+............+....+|.+|+-=. .+...+ ...+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999987555556678888888988764432100111223346887776211 121122 34455665445688887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ~s 82 (126)
T 1dbw_A 81 IT 82 (126)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 130
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=92.58 E-value=0.22 Score=33.86 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~PvL 101 (125)
.+++|+|+|........+...|++.|+.+..........+.+....+|.||+-=. .|. +.-.+.+.+++...+.||+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCEE
Confidence 4578999987555556788889999998755432111122233346898887211 111 1123455666655578887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 84 ~lt 86 (184)
T 3rqi_A 84 VLT 86 (184)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 131
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.58 E-value=0.35 Score=31.03 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=45.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+++|........+.+.|+..|+++..........+.+....+|.+|+-=. .+...+ .+.+.|++.....|++-+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999987666667788888888988754431101112222346898887322 121222 344556654456788776
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 83 s 83 (137)
T 3cfy_A 83 T 83 (137)
T ss_dssp E
T ss_pred E
Confidence 4
No 132
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=92.53 E-value=0.25 Score=30.58 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
+++|+++|........+.+.|++.|+++...-.+. .....+....+|.+++-=. .+...+ ...+.+++...+.|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhCCCCeEE
Confidence 56899998755555668888888899853222221 1112222336898887322 121122 2445555545568887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 80 ~~s 82 (120)
T 1tmy_A 80 VCS 82 (120)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 133
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=92.49 E-value=1.1 Score=29.50 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCeEEEEEC---CCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDN---YDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~---~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
..+.|+||.. .+.+.+.+.++|.+.|+++..+.+
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP 39 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGR 39 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESS
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECC
Confidence 4568999943 345567788999999997666544
No 134
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=92.32 E-value=0.37 Score=33.53 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH-------hcC-CCCEEEECCCCC
Q 033201 21 KNNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL-------KRK-NPRGVLISPGPG 79 (125)
Q Consensus 21 ~~~~~~I~vid~~~-------~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~-------~~~-~~dgiIi~GG~~ 79 (125)
+...+|+.||--++ +....+.++|++.|+++..+. .|+ .+.+ ... ++|.||.+||.+
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 34567888884332 233568899999999875432 232 2222 112 499999999965
No 135
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=92.10 E-value=0.16 Score=32.78 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHh-c-CCCCEEEECCCCCCcCCc-hHHHHHHHHhCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDS-GISLQTVLELGPT 97 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~-~-~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~ 97 (125)
....+|+|+|........+.+.|++.| +++............+. . ..+|.||+--. .+... -.+.+.|++...+
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHHCTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHhCCC
Confidence 455789999875555667888999888 88876543211111222 2 47898887322 11111 1234455554557
Q ss_pred CCEEEEch
Q 033201 98 VPLFGVCM 105 (125)
Q Consensus 98 ~PvLGIC~ 105 (125)
.|++-+.-
T Consensus 96 ~~ii~lt~ 103 (146)
T 4dad_A 96 LTCLLVTT 103 (146)
T ss_dssp CEEEEEES
T ss_pred CcEEEEeC
Confidence 88887763
No 136
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=92.09 E-value=0.38 Score=33.24 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCeEEEEE---------CCCCchHHHHHH----HHhCCCeEEEEe--CCCCCHHHH----h---cCCCCEEEECCCCC
Q 033201 23 NKNPIIVID---------NYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid---------~~~~~~~~i~~~----l~~~g~~~~v~~--~~~~~~~~~----~---~~~~dgiIi~GG~~ 79 (125)
+.+|+.||- -.++....+.++ |++.|+++..+. .|+ .+.+ . ..++|.||.+||.+
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 446777773 234555678899 999998775332 232 2222 1 12599999999965
No 137
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=92.06 E-value=0.82 Score=30.97 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=42.4
Q ss_pred CeEEEEEC-CCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHh---
Q 033201 25 NPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL--- 94 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--- 94 (125)
|+|+|+-+ ..+.+.. +.+.+++.|+++++++......+++. ..++|+||+ |.|---...+. ..++.++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~ 78 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA 78 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence 56777732 2244544 44556667999998887644455442 136899988 55532222221 3344332
Q ss_pred -CCCCCEEEEc
Q 033201 95 -GPTVPLFGVC 104 (125)
Q Consensus 95 -~~~~PvLGIC 104 (125)
-.++|+.-++
T Consensus 79 ~l~gk~v~~fg 89 (161)
T 3hly_A 79 AHNKQAIGLFD 89 (161)
T ss_dssp CCTTSEEEEEC
T ss_pred hhCCCEEEEEE
Confidence 3567765554
No 138
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=91.99 E-value=0.41 Score=29.61 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+.+.|+..|+.+............+....+|.+|+-=. .+...+ ...+.+++ ....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~ 78 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL 78 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence 358999987555556788888888988764432100111123346898887221 121122 23444554 45678776
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 79 ~s 80 (122)
T 1zgz_A 79 VT 80 (122)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 139
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=91.77 E-value=0.41 Score=34.15 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
...++|+|+|........+...|+..|+++..........+.+....+|.+|+-=. .+...+ .+.+.|++...+.|+
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~i 98 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGIDAPA 98 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 34578999987555556788889989998765432111112223346998887321 122222 344556654456898
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 99 i~lt~ 103 (250)
T 3r0j_A 99 LFLTA 103 (250)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87764
No 140
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=91.66 E-value=1.6 Score=29.91 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=42.8
Q ss_pred CeEEEEECC-CCchHHH----HHHHHhCCCeEEEEeCCC-------------------CCHHHHhcCCCCEEEECCCCCC
Q 033201 25 NPIIVIDNY-DSFTYNL----CQYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 25 ~~I~vid~~-~~~~~~i----~~~l~~~g~~~~v~~~~~-------------------~~~~~~~~~~~dgiIi~GG~~~ 80 (125)
|+|++|-.. .+.+..+ .+.+++.|.++++++..+ ...+++. ++|+||+ |.|--
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y 82 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR 82 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence 588888532 3444444 445566789998887643 1133443 7999998 55532
Q ss_pred cCC-chHHHHHHHHh--------CCCCCEEEEc
Q 033201 81 PQD-SGISLQTVLEL--------GPTVPLFGVC 104 (125)
Q Consensus 81 ~~~-~~~~~~~I~~~--------~~~~PvLGIC 104 (125)
-.. ...+..+|.++ -.+||+.-++
T Consensus 83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~ 115 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT 115 (200)
T ss_dssp TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence 222 23345555442 2567765443
No 141
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=91.52 E-value=0.52 Score=32.83 Aligned_cols=80 Identities=11% Similarity=0.228 Sum_probs=46.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
..++|+|+|........+...|+..|+++............+....+|.+|+--. .+...+ .+.+.+++...+.|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3478999987555556788889888988764432101112233347898887322 122222 3445566544578888
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 84 ~lt 86 (233)
T 1ys7_A 84 VLS 86 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 142
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=91.43 E-value=0.37 Score=31.27 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=43.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCe-EEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~-g~~-~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv 100 (125)
.++|+|++........+.+.|++. |+. +............+.. ..+|.+|+--.. ...+...+.+.+++...+.|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhCCCCeE
Confidence 468999987555556788888887 773 4333211011222333 468998884321 111222345566665557899
Q ss_pred EEEchH
Q 033201 101 FGVCMG 106 (125)
Q Consensus 101 LGIC~G 106 (125)
+-++--
T Consensus 82 i~ls~~ 87 (154)
T 2qsj_A 82 ALISGE 87 (154)
T ss_dssp EEC---
T ss_pred EEEeCC
Confidence 887643
No 143
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=91.41 E-value=0.64 Score=29.67 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv 100 (125)
..+|+|+|........+...|++.|+++..........+.+....+|.+|+-=. .+...+ .+.+.+++. ..+.|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999987555556788889989998765432111122233357898887221 122222 345566652 457898
Q ss_pred EEEch
Q 033201 101 FGVCM 105 (125)
Q Consensus 101 LGIC~ 105 (125)
+-+.-
T Consensus 82 i~~t~ 86 (136)
T 3t6k_A 82 LMLTA 86 (136)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87763
No 144
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=91.39 E-value=0.54 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCCCeEEEEECCC--------------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CC--CCEEEECCC
Q 033201 22 NNKNPIIVIDNYD--------------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KN--PRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~--------------~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~--~dgiIi~GG 77 (125)
...+||.||--++ ++...+..+|++.|+++..+. .|+ .+.+ .. .+ +|.||.+||
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4557888884332 223458899999999876432 232 2222 11 23 899999999
Q ss_pred CC
Q 033201 78 PG 79 (125)
Q Consensus 78 ~~ 79 (125)
.+
T Consensus 91 ~s 92 (178)
T 2pjk_A 91 TG 92 (178)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 145
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=91.36 E-value=0.46 Score=31.63 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~ 98 (125)
..+||+|+|-.......+.+.|++.|+.....-.+.. ..+.+....||.|++ -= ..|.-.+ ++.+.||+. ..++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCCC
Confidence 3468999986444456677899999986432222211 112223347998886 21 1233333 355677763 3678
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
||+-+-
T Consensus 89 pvI~lT 94 (134)
T 3to5_A 89 PVLMIT 94 (134)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 998775
No 146
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=91.30 E-value=0.5 Score=30.66 Aligned_cols=81 Identities=9% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
++++|+|+|........+.+.|+. |+++............+.... ||.||+--.- ...+.-.+.+.|++...+.|++
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCCcEEE
Confidence 457899998755455667778865 887765432111112222234 6988873221 1112223455666655678888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 81 ~~s~ 84 (151)
T 3kcn_A 81 MLTG 84 (151)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7764
No 147
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=91.02 E-value=0.5 Score=32.53 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h---cC-CCCEEEECCCCC
Q 033201 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPG 79 (125)
Q Consensus 34 ~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~---~~-~~dgiIi~GG~~ 79 (125)
++....+.++|++.|+++..+. .|+ .+.+ . .. ++|.||.+||.+
T Consensus 20 D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 20 DTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp CCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred cchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 4556678899999998775332 232 2222 1 11 699999999965
No 148
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=90.90 E-value=0.51 Score=32.35 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
...+|+|+|........+...|+..|+++............+....+|.+|+-=. .|...+ .+.+.+++...+.|++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999987555556788889888988764431100111122346888776211 122222 3445566545578988
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 81 ~ls 83 (208)
T 1yio_A 81 FIT 83 (208)
T ss_dssp EEE
T ss_pred EEe
Confidence 775
No 149
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=90.82 E-value=0.86 Score=32.11 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
.++|+|+|........+...|+..|+++..........+.+....+|.+|+-=. .+...+ .+.+.+++. .+.|++-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr~~-~~~~ii~ 81 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLRAD-SGVPIVM 81 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHTT-CCCCEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 468999987555556788889888998765542111122233346898887322 121222 233444443 3688887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 82 lt 83 (238)
T 2gwr_A 82 LT 83 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 150
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=90.79 E-value=0.3 Score=35.19 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=41.8
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+.... +.+....+||||+.+.. ..... +
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~--~~~~~---~ 80 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLD--DVYIG---S 80 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSC--TTTTH---H
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC--hHHHH---H
Confidence 44567877732 223332 35567778999999887542111 12223589999997642 22221 3
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.++++ +.++|+.-+
T Consensus 81 ~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 81 AIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 33433 456887765
No 151
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=90.70 E-value=0.29 Score=31.21 Aligned_cols=81 Identities=12% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG-ISLQTVLE 93 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~------~~~dgiIi~GG~~~~~~~~-~~~~~I~~ 93 (125)
..++|+|++........+.+.|++.|+ .+............+.. ..+|.||+--. .+...+ .+.+.+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFLKELRD 83 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHHHHHHc
Confidence 346899998755556678889998887 66554321111122222 46898887322 111122 23344444
Q ss_pred hC--CCCCEEEEch
Q 033201 94 LG--PTVPLFGVCM 105 (125)
Q Consensus 94 ~~--~~~PvLGIC~ 105 (125)
.. .+.|++-+.-
T Consensus 84 ~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 84 DSSFTDIEVFVLTA 97 (143)
T ss_dssp SGGGTTCEEEEEES
T ss_pred CccccCCcEEEEeC
Confidence 22 5688887763
No 152
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=90.65 E-value=0.5 Score=32.96 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred CCeEEEEECC---CCchHHHHH----H-HHhCCCeEEEEeCCCCCH-----------------HHHhcCCCCEEEECCCC
Q 033201 24 KNPIIVIDNY---DSFTYNLCQ----Y-MGELGYHFEVYRNDELTV-----------------EELKRKNPRGVLISPGP 78 (125)
Q Consensus 24 ~~~I~vid~~---~~~~~~i~~----~-l~~~g~~~~v~~~~~~~~-----------------~~~~~~~~dgiIi~GG~ 78 (125)
+|+|++|... .+++..+.+ . +++.|.++++++..+.+. +++ .++|+||+ |.|
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i--~~aD~ii~-~sP 78 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDAT--CNADGLIV-ATP 78 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHH--HHCSEEEE-EEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHH--HHCCEEEE-EeC
Confidence 3578888543 355555444 4 555588998887643322 112 26899998 554
Q ss_pred CCcCC-chHHHHHHHHh----CCCCCEEEEch
Q 033201 79 GAPQD-SGISLQTVLEL----GPTVPLFGVCM 105 (125)
Q Consensus 79 ~~~~~-~~~~~~~I~~~----~~~~PvLGIC~ 105 (125)
---.. ...+..+|..+ -.+||++-++.
T Consensus 79 ~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 79 IYKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp CBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred ccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 32112 23455666543 24788776654
No 153
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=90.58 E-value=0.62 Score=30.16 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=45.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHh---------cCCCCEEEECCCCCCcCCc-hHHHHH
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDS-GISLQT 90 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~---------~~~~dgiIi~GG~~~~~~~-~~~~~~ 90 (125)
++++|+|+|........+.+.|++.|+ .+..........+.+. ...+|.||+-=. .+... -.+.+.
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~~ 80 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILKL 80 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHHH
Confidence 357899998755555678889999998 4544432111112221 246888887321 11122 234566
Q ss_pred HHH--hCCCCCEEEEch
Q 033201 91 VLE--LGPTVPLFGVCM 105 (125)
Q Consensus 91 I~~--~~~~~PvLGIC~ 105 (125)
|++ ...+.|++-+.-
T Consensus 81 lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 81 VKENPHTRRSPVVILTT 97 (152)
T ss_dssp HHHSTTTTTSCEEEEES
T ss_pred HHhcccccCCCEEEEec
Confidence 666 346789887763
No 154
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=90.54 E-value=0.58 Score=29.73 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcC-CchHHHHHHHH-
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQ-DSGISLQTVLE- 93 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~-~~~~~~~~I~~- 93 (125)
..++|+|+|........+...|++.|+ .+............+.. ..+|.||+-=. .+. +.-.+.+.|++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence 446899998754445668888998998 44433211011122333 56998887322 111 22234566666
Q ss_pred ---hCCCCCEEEEch
Q 033201 94 ---LGPTVPLFGVCM 105 (125)
Q Consensus 94 ---~~~~~PvLGIC~ 105 (125)
.....|++-+.-
T Consensus 86 ~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSS 100 (146)
T ss_dssp CGGGTTTCEEEEECS
T ss_pred hhhccCCCeEEEEeC
Confidence 345788887754
No 155
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=90.53 E-value=0.91 Score=32.49 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+... . .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~---~ 76 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----P---Q 76 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----H---H
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----H---H
Confidence 3445777773 2223332 3556678899999888754211 1122335899999977532 2 3
Q ss_pred HHHHh-CCCCCEEEEc
Q 033201 90 TVLEL-GPTVPLFGVC 104 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC 104 (125)
.++.+ +.++|+.-+.
T Consensus 77 ~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 77 TVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHTTSSCEEEES
T ss_pred HHHHHHHCCCCEEEEe
Confidence 34443 5678887654
No 156
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=90.51 E-value=0.79 Score=31.65 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cC--CCCEEEECCCCC
Q 033201 22 NNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPG 79 (125)
Q Consensus 22 ~~~~~I~vid~~~-------~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~--~~dgiIi~GG~~ 79 (125)
...+|+.||--++ +....+.++|++.|+++..+. .|+ .+.+ . .. ++|.||.+||.+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 3457888884332 334568899999999875332 232 2222 1 13 699999999965
No 157
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=90.43 E-value=0.17 Score=32.46 Aligned_cols=80 Identities=6% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh-----CC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-----GP 96 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~-----~~ 96 (125)
+.++|+|+|........+...|+..|+.+............+....+|.+|+-=. .+...+ .+.+.|++. ..
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCC
Confidence 4568999987555556677888888888766532111112223346898887322 122122 234455542 24
Q ss_pred CCCEEEEc
Q 033201 97 TVPLFGVC 104 (125)
Q Consensus 97 ~~PvLGIC 104 (125)
..|++.+.
T Consensus 87 ~~~ii~~s 94 (140)
T 3c97_A 87 RASIIAIT 94 (140)
T ss_dssp CCCCEEEE
T ss_pred ceEEEEEe
Confidence 56777664
No 158
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=90.40 E-value=2.1 Score=29.34 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=43.7
Q ss_pred CCeEEEEECCCCchHHHH----HHHHhCCCeEEEEeCCCC--------------------CHHHHhcCCCCEEEECCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLC----QYMGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~----~~l~~~g~~~~v~~~~~~--------------------~~~~~~~~~~dgiIi~GG~~ 79 (125)
+|+|++|....+.+..+. +.+++.|.++++++..+. ..+++. ++|+||+ |.|-
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~ 80 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPT 80 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEEC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCc
Confidence 368888854344444444 445556899988876432 133343 6899998 5553
Q ss_pred CcCC-chHHHHHHHHh--------CCCCCEEEEc
Q 033201 80 APQD-SGISLQTVLEL--------GPTVPLFGVC 104 (125)
Q Consensus 80 ~~~~-~~~~~~~I~~~--------~~~~PvLGIC 104 (125)
--.. ...+..+|.++ -.+||+.-++
T Consensus 81 y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~ 114 (199)
T 2zki_A 81 RYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT 114 (199)
T ss_dssp BTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred cccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 2222 23344555442 2567765544
No 159
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=90.30 E-value=1.1 Score=27.57 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=43.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
..+|+++|........+...|+..|+++............+....+|.+|+--. .+...+ .+.+.+++. ...|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 358999987554556678888888988654432111112223347898887322 122222 234455544 4678876
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 80 ~s 81 (123)
T 1xhf_A 80 LT 81 (123)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 160
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=90.15 E-value=1.4 Score=31.59 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=43.7
Q ss_pred CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 25 ~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
.+|.++- ..+.|.. .+.+.+++.|+++.+...+.... +.+...++||||+.+......+.. .+.++
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--IGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--HHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc--HHHHH
Confidence 6787773 3333433 35567788999999887542111 112235899999987633211111 13333
Q ss_pred Hh-CCCCCEEEEc
Q 033201 93 EL-GPTVPLFGVC 104 (125)
Q Consensus 93 ~~-~~~~PvLGIC 104 (125)
++ +.++|+.-+.
T Consensus 94 ~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 94 NLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHTTCCEEEES
T ss_pred HHHhcCCCEEEEe
Confidence 33 4568877653
No 161
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=89.94 E-value=0.86 Score=31.66 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhc-------------CCCCEEEECCCCCCcCCch-H
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDSG-I 86 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~-------------~~~dgiIi~GG~~~~~~~~-~ 86 (125)
..+++|+|||........+.+.|++.|+ .+..........+.+.. ..+|.||+-=. .+...+ .
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e 136 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE 136 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence 3557999998755555678889999998 56554321111111221 26898887211 122222 3
Q ss_pred HHHHHHHh----CCCCCEEEEch
Q 033201 87 SLQTVLEL----GPTVPLFGVCM 105 (125)
Q Consensus 87 ~~~~I~~~----~~~~PvLGIC~ 105 (125)
+.+.|++. ..++|++-+.-
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEES
T ss_pred HHHHHHhhhhhcCCCCcEEEEEC
Confidence 45566653 36789988774
No 162
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=89.92 E-value=2.6 Score=26.89 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=35.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCchH--HHHHHHHh---CCCCCEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL---GPTVPLFG 102 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~~~--~~~~I~~~---~~~~PvLG 102 (125)
+.+.+++.|.++++++..+...+++. ++|+||+ |.|- .-...+. +..++.++ -.++|+.-
T Consensus 20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~ 85 (137)
T 2fz5_A 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGL 85 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEE
T ss_pred HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhhcCCCEEEE
Confidence 34445567899998887654555664 7899988 4443 2222333 55666653 24667553
No 163
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=89.84 E-value=0.66 Score=33.35 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
..+|.++-. .+.|.. .+.+.+++.|+++.+....... .+.+...++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456777732 223322 3556778899999887653211 11222357999999764
No 164
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=89.80 E-value=1.2 Score=28.33 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv 100 (125)
.++|+|+|........+.+.|++.|+.+............+....+|.+|+-=. .+...+ .+.+.|++. ...+|+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCE
Confidence 358999987555556788889888988764431101112223346898887221 121122 344555553 346899
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 81 i~ls 84 (138)
T 3c3m_A 81 LMLT 84 (138)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 165
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=89.71 E-value=0.51 Score=30.57 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=46.4
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCC
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~ 98 (125)
...+.+|+|+|........+.+.|++.|....+...... ..+.+....+|.||+--.. ...+...+.+.+++.....
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCSC
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 356678999987555556788889888865444322211 1122233479998873221 1112223455566555567
Q ss_pred CEEEEch
Q 033201 99 PLFGVCM 105 (125)
Q Consensus 99 PvLGIC~ 105 (125)
|++-+.-
T Consensus 91 ~ii~~s~ 97 (152)
T 3eul_A 91 RVLLISA 97 (152)
T ss_dssp EEEEEES
T ss_pred eEEEEEc
Confidence 8877653
No 166
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=89.56 E-value=0.81 Score=27.95 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=43.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+++|........+...|+..|+.+............+....+|.+++--. .+...+ ...+.+++. ...|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 47999987544556677888888988764432111112222336898887322 122222 234555543 46888877
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 s 79 (120)
T 2a9o_A 79 S 79 (120)
T ss_dssp E
T ss_pred e
Confidence 5
No 167
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=89.56 E-value=0.95 Score=28.12 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=43.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~ 98 (125)
..++|+++|........+.+.|++.|+ .+............+....+|.+++-=. .+...+ .+.+.+++. ....
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence 346899998755555667788888888 4544332111112233346888877221 122222 234555542 3467
Q ss_pred CEEEEch
Q 033201 99 PLFGVCM 105 (125)
Q Consensus 99 PvLGIC~ 105 (125)
|++-+.-
T Consensus 81 ~ii~~s~ 87 (128)
T 1jbe_A 81 PVLMVTA 87 (128)
T ss_dssp CEEEEES
T ss_pred cEEEEec
Confidence 8887753
No 168
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=89.39 E-value=1.1 Score=32.71 Aligned_cols=74 Identities=15% Similarity=0.012 Sum_probs=42.0
Q ss_pred CeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 25 NPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 25 ~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
.+|.++- ..+.|. ..+.+.+++.|+++.+...+... .+.+....+||||+.+... ... .+.++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~---~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG--QVL---SNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST--TSC---HHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--hhh---HHHHH
Confidence 4676662 223443 33667778899999888754211 1122235899999977522 121 23444
Q ss_pred Hh-CCCCCEEEE
Q 033201 93 EL-GPTVPLFGV 103 (125)
Q Consensus 93 ~~-~~~~PvLGI 103 (125)
++ +.++|+.-+
T Consensus 78 ~~~~~~iPvV~~ 89 (313)
T 3m9w_A 78 EAKQEGIKVLAY 89 (313)
T ss_dssp HHHTTTCEEEEE
T ss_pred HHHHCCCeEEEE
Confidence 43 556787654
No 169
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=89.36 E-value=0.7 Score=33.17 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=42.8
Q ss_pred CCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
+.+|.++-. .+.|. ..+.+.+++.|+++.+...+... .+.+...++||||+.+.. .......+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHHHH
Confidence 457777733 22332 23556778899999888654211 111223479999997642 11223445
Q ss_pred HHh-CCCCCEEEE
Q 033201 92 LEL-GPTVPLFGV 103 (125)
Q Consensus 92 ~~~-~~~~PvLGI 103 (125)
+++ +.++|+.-+
T Consensus 80 ~~~~~~~iPvV~~ 92 (291)
T 3l49_A 80 QKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCcEEEe
Confidence 544 457887665
No 170
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=89.14 E-value=0.21 Score=32.38 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh----CC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GP 96 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~----~~ 96 (125)
..+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=. .+...+ .+.+.+++. ..
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence 45579999986544456678888888988765432111112233357998887211 122222 345556542 24
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
..|++-+.-
T Consensus 90 ~~pii~~s~ 98 (143)
T 3m6m_D 90 YTPVVVLSA 98 (143)
T ss_dssp CCCEEEEES
T ss_pred CCeEEEEeC
Confidence 578887653
No 171
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=89.00 E-value=0.86 Score=32.81 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+.... +.+....+||||+.+... .. .
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~---~ 78 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG----EH---D 78 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS----CC---H
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC----Ch---H
Confidence 4456787773 2223322 35567788999999887542111 112335899999987632 11 3
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.++.+ +.++|+.-+
T Consensus 79 ~~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 79 YLRTELPKTFPIVAV 93 (291)
T ss_dssp HHHHSSCTTSCEEEE
T ss_pred HHHHhhccCCCEEEE
Confidence 34444 567777655
No 172
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=88.93 E-value=0.62 Score=33.24 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCeEEEEEC---------CCCchHHHHHHHHhCCCe--E---EEEeCCCCCH-HHH---hc-CCCCEEEECCCCC
Q 033201 24 KNPIIVIDN---------YDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EEL---KR-KNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~---------~~~~~~~i~~~l~~~g~~--~---~v~~~~~~~~-~~~---~~-~~~dgiIi~GG~~ 79 (125)
.+|+.||-- .|+....+.++|++.|++ + .+++.+.... +.+ .. .++|.||.+||.+
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg 77 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG 77 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 457777732 234456688999999876 2 3444331111 112 11 2689999999966
No 173
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=88.86 E-value=2.1 Score=31.02 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=42.1
Q ss_pred CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+....|.++ +..+.|.. .+.+.+++.|+.+.+...+.... +.+....+||||+.+...+ .. +
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~~---~ 86 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF---DD---D 86 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC---CH---H
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC---cH---H
Confidence 444567777 33333433 35567788999998887542221 1223458999999876322 11 1
Q ss_pred HHHHh-CCCCCEEEEc
Q 033201 90 TVLEL-GPTVPLFGVC 104 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC 104 (125)
.+..+ + ++|+.-+-
T Consensus 87 ~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 87 MLAAVLE-GVPAVTIN 101 (303)
T ss_dssp HHHHHHT-TSCEEEES
T ss_pred HHHHHhC-CCCEEEEC
Confidence 33333 4 78887653
No 174
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=88.83 E-value=0.92 Score=27.92 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=44.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~PvL 101 (125)
++|+++|........+.+.|+..|+.+............+....+|.+|+-=. .+...+ .+.+.+++. ....|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence 57999987555556788889888988764431100111222336898887221 121222 244555553 2468998
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 80 ~~s~ 83 (124)
T 1mb3_A 80 AVTA 83 (124)
T ss_dssp EEC-
T ss_pred EEEC
Confidence 8764
No 175
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=88.70 E-value=1.3 Score=32.07 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=41.1
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+... .....+
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~~~~ 89 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI----TDEHVA 89 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHHH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC----CHHHHH
Confidence 3445777773 3233322 3556778899999887653211 1122235899999977522 122222
Q ss_pred HHHHhCCCCCEEEEc
Q 033201 90 TVLELGPTVPLFGVC 104 (125)
Q Consensus 90 ~I~~~~~~~PvLGIC 104 (125)
.+. ..++|+..+.
T Consensus 90 ~l~--~~~iPvV~~~ 102 (289)
T 2fep_A 90 EFK--RSPVPIVLAA 102 (289)
T ss_dssp HHH--HSSSCEEEES
T ss_pred HHH--hcCCCEEEEc
Confidence 222 3567876653
No 176
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=88.70 E-value=1.4 Score=28.68 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=39.8
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (125)
Q Consensus 25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG 102 (125)
.+-++|.|.... ...+.++|...++++.- +.+. ..|++|+.-|..+.+. ......|.. .+.+||++|
T Consensus 4 ~~~lFISh~~~d~~~~L~~~l~~~~f~~~~--------~~I~--~~~~vIvL~G~~t~~s-~wv~~EI~~A~~~gkpIig 72 (111)
T 1eiw_A 4 EIRLYITEGEVEDYRVFLERLEQSGLEWRP--------ATPE--DADAVIVLAGLWGTRR-DEILGAVDLARKSSKPIIT 72 (111)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHCSCEEE--------CCSS--SCSEEEEEGGGTTTSH-HHHHHHHHHHTTTTCCEEE
T ss_pred eEEEEEecccHhHHHHHHHHHhCCCCeeec--------Cccc--cCCEEEEEeCCCcCCC-hHHHHHHHHHHHcCCCEEE
Confidence 344777664443 23455666555666643 2333 6889888887554332 223344444 478999999
Q ss_pred E
Q 033201 103 V 103 (125)
Q Consensus 103 I 103 (125)
|
T Consensus 73 V 73 (111)
T 1eiw_A 73 V 73 (111)
T ss_dssp E
T ss_pred E
Confidence 8
No 177
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=88.68 E-value=1 Score=32.33 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
..++|+|+|........+...|++.|+.+............+....+|.||+-=. .|...+ .+.+.|++ ....||+
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCEE
Confidence 3468999987555556788888888886654432111122233357999887211 111111 12334444 3568888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 113 ~lt~ 116 (249)
T 3q9s_A 113 VLTA 116 (249)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7764
No 178
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=88.59 E-value=0.79 Score=33.17 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 24 ~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
+++|+++-. .+.|.. .+.+.+++.|+++.++.....+. +.+...++||||+.+... .... +.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~---~~ 78 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP--VELT---DT 78 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST--TTTH---HH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH--HHHH---HH
Confidence 457777733 233433 35566777899998843221222 112234799999977532 1112 33
Q ss_pred HHHh-CCCCCEEEE
Q 033201 91 VLEL-GPTVPLFGV 103 (125)
Q Consensus 91 I~~~-~~~~PvLGI 103 (125)
++++ +.++|+.-+
T Consensus 79 ~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 79 INKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCcEEEE
Confidence 4433 456777654
No 179
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=88.58 E-value=0.69 Score=32.09 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=44.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC 104 (125)
|+|+++|........+...|+..|+.+............+....+|.+| .++ .+.-.+.+.+++...+.|++-+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt 75 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSS 75 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEE
Confidence 5799998755555678888988898876443211111223334689888 332 11123445555542278988876
Q ss_pred h
Q 033201 105 M 105 (125)
Q Consensus 105 ~ 105 (125)
-
T Consensus 76 ~ 76 (223)
T 2hqr_A 76 D 76 (223)
T ss_dssp S
T ss_pred C
Confidence 3
No 180
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=88.51 E-value=0.69 Score=33.15 Aligned_cols=55 Identities=18% Similarity=0.052 Sum_probs=32.4
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+.....+.. ..+||||+.+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~~vdgiI~~~~ 66 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-KMVDGAIILDW 66 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-TTCSEEEEECT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-ccccEEEEecC
Confidence 4456787773 2334433 355667778999988765321111111 27999999775
No 181
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=88.51 E-value=4.8 Score=29.96 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHHHh---cCCCCEEEECCCCCCcCCchHHHH
Q 033201 21 KNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEELK---RKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~---~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|+++|-|..+- ...+.++|++.|++++++..... ...++. ..++|.||+.||- +.+.+
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGD------GTl~~ 78 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGD------GTVFE 78 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECH------HHHHH
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccc------hHHHH
Confidence 3345688888665321 13466788889999988764321 121221 1379999999993 34455
Q ss_pred HHHHh-C--CCCCEEEEchHHH-HHHHHhC
Q 033201 90 TVLEL-G--PTVPLFGVCMGLQ-CIGEAFG 115 (125)
Q Consensus 90 ~I~~~-~--~~~PvLGIC~G~Q-lLa~a~G 115 (125)
.+..+ . .+.|+..|=.|-. -+|+.+|
T Consensus 79 v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 79 CTNGLAPLEIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHHhhCCCCCcEEEecCCcHHHHHHHcC
Confidence 55554 3 5667776665544 4555555
No 182
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=88.41 E-value=0.28 Score=30.56 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCch-HHHHHHHHhC--C
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--P 96 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~--~ 96 (125)
.++|+++|........+...|++.|+.+..... ..+. ....+|.+|+-=. .+...+ ...+.+++.. .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~----~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~ 75 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAED----YDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTR 75 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECS----HHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCC----HHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccC
Confidence 468999987555556688888888998764431 2222 2236888876211 111111 2344555422 5
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
+.|++-+.-
T Consensus 76 ~~~ii~~s~ 84 (127)
T 2jba_A 76 DIPVVMLTA 84 (127)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEeC
Confidence 688887653
No 183
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=88.34 E-value=0.92 Score=29.46 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCch--HHHHHHHHh---CCCCCEEEE
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPLFGV 103 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~~--~~~~~I~~~---~~~~PvLGI 103 (125)
+.+.+++.|+++++++..+.+.+++. ++|.||+ |.|- .-...+ .+..++.++ -.++++.-+
T Consensus 19 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f 85 (138)
T 5nul_A 19 IAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKVALF 85 (138)
T ss_dssp HHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEE
T ss_pred HHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEE
Confidence 44556667999988887544555664 7999988 4442 111111 345566553 246665444
No 184
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=88.25 E-value=5.3 Score=30.00 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=37.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HHHHh---------------c-CCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------R-KNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~---------------~-~~~dgiIi~GG~ 78 (125)
++.++|+||..+.+--..+.++|.+.|+++...+....+ .+.+. . .++|.||+|+|-
T Consensus 2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 356789999876543334788999999999888753211 11111 0 258999999884
No 185
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=88.25 E-value=0.38 Score=30.18 Aligned_cols=88 Identities=9% Similarity=0.052 Sum_probs=50.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh---cCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK---RKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~---~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~P 99 (125)
+++|+++|........+.+.|++.+..+..... .++.. ...+|.+|+--. .+... -.+.+.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ 76 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAEHKSPAS 76 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHHTTCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCCC
Confidence 478999987555556788888888767665532 23321 123888887322 11111 123455555455678
Q ss_pred EEEEchH-------HHHHHHHhCCe
Q 033201 100 LFGVCMG-------LQCIGEAFGGE 117 (125)
Q Consensus 100 vLGIC~G-------~QlLa~a~Gg~ 117 (125)
++-+.-- .+.+..+++..
T Consensus 77 ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 77 LILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEeccchhHHHHHHHHHHcCCC
Confidence 8766532 15566666654
No 186
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=88.08 E-value=3 Score=30.42 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
+.+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+.. . ......+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~--~---~~~~~~~ 77 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID--G---TTLSDVL 77 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS--G---GGGHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC--c---hhHHHHH
Confidence 45677773 3234432 3556778899999888654211 112223479999997642 1 1122333
Q ss_pred HHh-CCCCCEEEE
Q 033201 92 LEL-GPTVPLFGV 103 (125)
Q Consensus 92 ~~~-~~~~PvLGI 103 (125)
+++ +.++|+.-+
T Consensus 78 ~~~~~~giPvV~~ 90 (330)
T 3uug_A 78 KQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 333 445676544
No 187
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=87.79 E-value=3.8 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCCeEEEEEC-CCCchHH----HHHHHHhCCCeEEEEeCCCC-CHHHHh--cCCCCEEEECCCC
Q 033201 23 NKNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDEL-TVEELK--RKNPRGVLISPGP 78 (125)
Q Consensus 23 ~~~~I~vid~-~~~~~~~----i~~~l~~~g~~~~v~~~~~~-~~~~~~--~~~~dgiIi~GG~ 78 (125)
..++|+|+-+ ..+.+.. +.+.+++.|+++++++.... ..+++. ..++|+||+ |.|
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 3457777732 2244544 44556667999999887654 455442 136899988 554
No 188
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=87.64 E-value=2.3 Score=29.58 Aligned_cols=35 Identities=6% Similarity=0.057 Sum_probs=22.4
Q ss_pred CCCeEEEEECC-CCchHHH----HHHHHhCCCeEEEEeCC
Q 033201 23 NKNPIIVIDNY-DSFTYNL----CQYMGELGYHFEVYRND 57 (125)
Q Consensus 23 ~~~~I~vid~~-~~~~~~i----~~~l~~~g~~~~v~~~~ 57 (125)
..|+|++|... .+.+..+ .+.+++.|.++++++..
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 35789888542 3444444 44556678999988764
No 189
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=87.50 E-value=1.2 Score=30.82 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
+.++|+|+|........+...|+..|+++............+....+|.+|+--. .+...+ ...+.+++. ...|++
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~-~~~~ii 79 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR-SSVPVI 79 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-CSCSEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEE
Confidence 3468999987555556788889888988764432101112222336898887322 121122 234555553 468888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 80 ~lt~ 83 (230)
T 2oqr_A 80 MVTA 83 (230)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7753
No 190
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=87.33 E-value=0.71 Score=29.34 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC--CCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~--~~~PvL 101 (125)
+++|+|+|........+.+.|++. +.+............+....+|.||+--.... .+...+.+.+++.. .+.|++
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCCCCEE
Confidence 468999987554556677888777 66654432111112223347898887322100 11112445566543 678988
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 81 ~~s~ 84 (140)
T 3n53_A 81 LLFS 84 (140)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 191
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=87.26 E-value=0.55 Score=34.10 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCeEEEEECC--CCchH----HHHHHHHhCCCeEEEEeCCCC-C-------HHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVIDNY--DSFTY----NLCQYMGELGYHFEVYRNDEL-T-------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vid~~--~~~~~----~i~~~l~~~g~~~~v~~~~~~-~-------~~~~~~~~~dgiIi~GG 77 (125)
+.+|.++-.. +.|.. .+.+.+++.|+++.+...+.. + .+.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3567777332 23322 355677778999988764311 1 12223358999999765
No 192
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=87.11 E-value=1.4 Score=28.88 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=42.3
Q ss_pred CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-Cc--CC-chHHHHHHHHh-
Q 033201 25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-AP--QD-SGISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid-~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~--~~-~~~~~~~I~~~- 94 (125)
++|+|+- ...+.+..+. +.+++.|+++++++..+.+.+++.. ++|.||+ |.|- .- .+ ......++..+
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~-g~pty~~~~G~~p~~~~~fl~~l~ 79 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF-GCSAWGMEDLEMQDDFLSLFEEFD 79 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE-EECEECSSSCEECHHHHHHHTTGG
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE-EecccCCCCCCCcHHHHHHHHHhh
Confidence 5677773 2234444444 4456678999998876443344421 6899888 4432 11 11 12345566543
Q ss_pred ---CCCCCEEEEch
Q 033201 95 ---GPTVPLFGVCM 105 (125)
Q Consensus 95 ---~~~~PvLGIC~ 105 (125)
-.++++.-++.
T Consensus 80 ~~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 80 RIGLAGRKVAAFAS 93 (148)
T ss_dssp GTCCTTCEEEEEEE
T ss_pred ccCCCCCEEEEEEe
Confidence 14566544444
No 193
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=87.08 E-value=0.23 Score=32.71 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=44.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
.++||+|+|-.......+.+.|++.|+++.-.-.+. ...+-+....||.+++ -= ..|...+ .+.+.+++ .++||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll-Di-~mP~~~G~el~~~lr~--~~ipv 82 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII-DV-NLDGEPSYPVADILAE--RNVPF 82 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE-CS-SSSSCCSHHHHHHHHH--TCCSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE-ec-CCCCCCHHHHHHHHHc--CCCCE
Confidence 457899998766667788999999998863111110 1122233457998886 11 1122222 23445554 46887
Q ss_pred EEE
Q 033201 101 FGV 103 (125)
Q Consensus 101 LGI 103 (125)
+-+
T Consensus 83 I~l 85 (123)
T 2lpm_A 83 IFA 85 (123)
T ss_dssp CCB
T ss_pred EEE
Confidence 644
No 194
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=87.05 E-value=2.5 Score=29.00 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=44.8
Q ss_pred CCCeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeCCCCCH-----------HH---H-h-cCCCCEEEECCCCCC
Q 033201 23 NKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELTV-----------EE---L-K-RKNPRGVLISPGPGA 80 (125)
Q Consensus 23 ~~~~I~vid~~---~~~~~~i~~~l~~---~g~~~~v~~~~~~~~-----------~~---~-~-~~~~dgiIi~GG~~~ 80 (125)
..|+|++|... .+++..+.+++.+ .|.++++++..+.+. ++ + . -.++|+||+ |.|--
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP~y 83 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATPEY 83 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECCEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Ecccc
Confidence 34689988643 2566667777644 377888876543110 11 1 1 136899998 55531
Q ss_pred cCC-chHHHHHHHHh-------CCCCCEEEEch
Q 033201 81 PQD-SGISLQTVLEL-------GPTVPLFGVCM 105 (125)
Q Consensus 81 ~~~-~~~~~~~I~~~-------~~~~PvLGIC~ 105 (125)
-.. ...+..+|..+ -.+||+.-||.
T Consensus 84 ~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t 116 (193)
T 1rtt_A 84 NYSMAGVLKNAIDWASRPPEQPFSGKPAAILGA 116 (193)
T ss_dssp TTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred ccCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence 111 23355566553 24678766654
No 195
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=86.99 E-value=3.2 Score=31.37 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=49.7
Q ss_pred CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 033201 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (125)
Q Consensus 25 ~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~- 94 (125)
+|++||-|..+- ...+.++|++.|+++.+...... ...+ .....+|.||+.||- +.+.+.++.+
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD------GTl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD------GTINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH------HHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc------hHHHHHHHHHh
Confidence 568888664321 23477888889999887764311 1112 222368999999993 3344445442
Q ss_pred ----CCCCCEEEEchHHH-HHHHHhC
Q 033201 95 ----GPTVPLFGVCMGLQ-CIGEAFG 115 (125)
Q Consensus 95 ----~~~~PvLGIC~G~Q-lLa~a~G 115 (125)
..++|+..|=.|-- .+++.+|
T Consensus 104 ~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 104 QCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred hcccCCCCeEEEecCcCHHHHHHhcC
Confidence 45678776734432 2455554
No 196
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=86.87 E-value=1.8 Score=30.12 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCeEEEEECC---------CCchHHHHHHHH---hCCCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCCC
Q 033201 24 KNPIIVIDNY---------DSFTYNLCQYMG---ELGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~---------~~~~~~i~~~l~---~~g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~~ 79 (125)
.+||.||--+ ++....+..+|+ +.|+++ .+. .|+ .+.+ . . .++|.||.+||.+
T Consensus 5 ~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 5 KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4678888432 334456788787 899887 332 222 2222 1 1 1699999999965
No 197
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=86.85 E-value=5.9 Score=28.28 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred CCeEEEE--E-C---CCCchHH----HHHHHHhCCCeEEEEeCCCC---C---HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 24 KNPIIVI--D-N---YDSFTYN----LCQYMGELGYHFEVYRNDEL---T---VEELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 24 ~~~I~vi--d-~---~~~~~~~----i~~~l~~~g~~~~v~~~~~~---~---~~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
..+|.++ + . .+.|... +.+.+++.|+++.+...+.. . .+.+....+||||+.+...+ . ..
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~---~-~~ 79 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN---D-PR 79 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT---C-HH
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC---c-HH
Confidence 3467666 2 2 3344333 55667789999877653211 1 12233457999999775321 1 22
Q ss_pred HHHHHHhCCCCCEEEEc
Q 033201 88 LQTVLELGPTVPLFGVC 104 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGIC 104 (125)
.+.++ +.++|+..+.
T Consensus 80 ~~~l~--~~~iPvV~~~ 94 (287)
T 3bbl_A 80 VQFLL--KQKFPFVAFG 94 (287)
T ss_dssp HHHHH--HTTCCEEEES
T ss_pred HHHHH--hcCCCEEEEC
Confidence 22232 3467776553
No 198
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=86.79 E-value=1.1 Score=29.43 Aligned_cols=78 Identities=9% Similarity=-0.004 Sum_probs=41.0
Q ss_pred CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCC-cCC---chHHHHHHHHh
Q 033201 25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL 94 (125)
Q Consensus 25 ~~I~vid-~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~-~~~---~~~~~~~I~~~ 94 (125)
|+|+|+- ...+.+..+. +.+++.|+++++++..+.+.+++ .+ +|.||+ |.|-- ... ...+..++..+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l--~~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l 77 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGL--FEGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL 77 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTT--TTTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHh--cCcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence 4677763 2234444444 44555788998887643333334 36 899888 44321 112 12344555543
Q ss_pred ----CCCCCEEEEch
Q 033201 95 ----GPTVPLFGVCM 105 (125)
Q Consensus 95 ----~~~~PvLGIC~ 105 (125)
-.++++.-+|.
T Consensus 78 ~~~~l~~k~~~v~~~ 92 (147)
T 1f4p_A 78 EETGAQGRKVACFGC 92 (147)
T ss_dssp GGSCCTTCEEEEEEE
T ss_pred HhcccCCCEEEEEee
Confidence 23566655544
No 199
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=86.73 E-value=1.4 Score=34.59 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCeEEEEECCC--Cc---hHHHHHHHHhCCCeEEEEeCCCC----------------------CHHHHhcCCCCEEEEC
Q 033201 23 NKNPIIVIDNYD--SF---TYNLCQYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLIS 75 (125)
Q Consensus 23 ~~~~I~vid~~~--~~---~~~i~~~l~~~g~~~~v~~~~~~----------------------~~~~~~~~~~dgiIi~ 75 (125)
..++|+||--.. +. ...+.+||.+.|+++.+-+.... ..+++ ...+|.+|..
T Consensus 37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~l 115 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICL 115 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEE
Confidence 456799985322 22 24588999999988865421000 00111 1368999999
Q ss_pred CCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 76 GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
||-+ .+....+.+ ..++||+||=+|
T Consensus 116 GGDG------T~L~aa~~~~~~~~PvlGiN~G 141 (365)
T 3pfn_A 116 GGDG------TLLYASSLFQGSVPPVMAFHLG 141 (365)
T ss_dssp SSTT------HHHHHHHHCSSSCCCEEEEESS
T ss_pred cChH------HHHHHHHHhccCCCCEEEEcCC
Confidence 9943 355666665 567999999877
No 200
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=86.67 E-value=3 Score=31.18 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=47.5
Q ss_pred CCeEEEEEC--CCCch---HHHHHHHHhCC-CeEEEEeCCC-----CCH-HHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVIDN--YDSFT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid~--~~~~~---~~i~~~l~~~g-~~~~v~~~~~-----~~~-~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..|||||.- ...+. ..+.+.|++.| +++++..... ..+ +++ .+||.||+.- .+...... ..+.+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l~~~-~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSWPEE-TNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCCCHH-HHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcCCHH-HHHHH
Confidence 468898832 22222 35778888888 8998875310 111 122 3799999744 23332223 34445
Q ss_pred HH-hCCCCCEEEEchHH
Q 033201 92 LE-LGPTVPLFGVCMGL 107 (125)
Q Consensus 92 ~~-~~~~~PvLGIC~G~ 107 (125)
.+ ++++.+++|+..+.
T Consensus 80 ~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 80 LEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp HHHHHTTCEEEEEGGGG
T ss_pred HHHHHcCCCEEEEeccc
Confidence 44 57889999998753
No 201
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=86.65 E-value=2.6 Score=30.07 Aligned_cols=56 Identities=9% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCCCeEEEEE-------CCCCchHH----HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID-------NYDSFTYN----LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid-------~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++- ..+.|... +.+.+++.|+++.+...+... .+.+....+||||+.+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 4456788873 23334333 556677899999876543211 11122358999999775
No 202
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=86.64 E-value=1.9 Score=26.92 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=43.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~ 97 (125)
.+++|+++|........+.+.|++.|+. +............+.. ..+|.+|+-=. .+...+ .+.+.+++. ..+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~~g~~~~~~lr~~~~~~~ 81 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKE 81 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTT
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence 4578999987555556788889989986 4333211011122222 25888776211 122222 344555552 256
Q ss_pred CCEEEEc
Q 033201 98 VPLFGVC 104 (125)
Q Consensus 98 ~PvLGIC 104 (125)
.|++-+.
T Consensus 82 ~pii~~s 88 (129)
T 3h1g_A 82 IPIIMIT 88 (129)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 8998876
No 203
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=86.58 E-value=5.3 Score=29.16 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred CCCCCeEEEEECC---CCchHHHHH----HHHhCCCeEEEEeCCCCC-----------HHHHh--cCCCCEEEECCCCC-
Q 033201 21 KNNKNPIIVIDNY---DSFTYNLCQ----YMGELGYHFEVYRNDELT-----------VEELK--RKNPRGVLISPGPG- 79 (125)
Q Consensus 21 ~~~~~~I~vid~~---~~~~~~i~~----~l~~~g~~~~v~~~~~~~-----------~~~~~--~~~~dgiIi~GG~~- 79 (125)
....|+|++|.-. .+++..+.+ .+++.|.++++++..+.+ ..++. -...|+||+ +.|.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP~Y 109 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSPER 109 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEECS
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeCCC
Confidence 3456789988532 355544444 445579999988764333 12221 136899998 5543
Q ss_pred CcCCchHHHHHHHHh---------CCCCCEEEEch
Q 033201 80 APQDSGISLQTVLEL---------GPTVPLFGVCM 105 (125)
Q Consensus 80 ~~~~~~~~~~~I~~~---------~~~~PvLGIC~ 105 (125)
+-.-...+..+|..+ -.+||+.-|+.
T Consensus 110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 112233455566543 14788776665
No 204
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=86.24 E-value=2.5 Score=31.28 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=42.2
Q ss_pred CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++ +..+.|.. .+.+.+++.|+.+.+...+... .+.+....+||||+.+... .....+
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~~~~~ 141 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH----SEAARA 141 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----CHHHHH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC----CHHHHH
Confidence 345678777 33334433 3556677789999887654211 1112235799999976422 122222
Q ss_pred HHHHhCCCCCEEEE
Q 033201 90 TVLELGPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~~~~~PvLGI 103 (125)
.++ ..++|+.-+
T Consensus 142 ~l~--~~~iPvV~i 153 (344)
T 3kjx_A 142 MLD--AAGIPVVEI 153 (344)
T ss_dssp HHH--HCSSCEEEE
T ss_pred HHH--hCCCCEEEE
Confidence 222 356887765
No 205
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=86.18 E-value=2.8 Score=30.13 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=41.0
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCC-C--------HHHHhcCCCCEEEECCCCCCcCCchH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-T--------VEELKRKNPRGVLISPGPGAPQDSGI 86 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~--------~~~~~~~~~dgiIi~GG~~~~~~~~~ 86 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+.. . .+.+....+||||+.+...+ ..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~ 81 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DE 81 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HH
Confidence 3445787773 2223322 355667789999987754321 1 11122357999999775321 22
Q ss_pred HHHHHHHhCCCCCEEEEc
Q 033201 87 SLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 87 ~~~~I~~~~~~~PvLGIC 104 (125)
..+.++ +.++|+.-+.
T Consensus 82 ~~~~l~--~~~iPvV~~~ 97 (290)
T 2rgy_A 82 DLDELH--RMHPKMVFLN 97 (290)
T ss_dssp HHHHHH--HHCSSEEEES
T ss_pred HHHHHh--hcCCCEEEEc
Confidence 223333 2457877654
No 206
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=86.14 E-value=2.1 Score=30.67 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=41.7
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+.... +.+...++||||+.+...+ ....+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~ 81 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE----LPELQ 81 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG----HHHHH
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC----hHHHH
Confidence 44567877742 223322 35566778999998876532111 1122357999999765211 12223
Q ss_pred HHHHhCCCCCEEEEc
Q 033201 90 TVLELGPTVPLFGVC 104 (125)
Q Consensus 90 ~I~~~~~~~PvLGIC 104 (125)
.++ .++|+..+.
T Consensus 82 ~l~---~~iPvV~~~ 93 (285)
T 3c3k_A 82 NII---GAFPWVQCA 93 (285)
T ss_dssp HHH---TTSSEEEES
T ss_pred HHh---cCCCEEEEc
Confidence 333 568877654
No 207
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=86.03 E-value=2.4 Score=29.87 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=33.9
Q ss_pred CCCeEEEEECC---------CCchHHHHHHHHh---CCCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCCC
Q 033201 23 NKNPIIVIDNY---------DSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~~---------~~~~~~i~~~l~~---~g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~~ 79 (125)
..+|+.||--+ ++....+..+|++ .|+++..+. .|+ .+.+ . . .++|.||.+||.+
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg 89 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence 35688888432 3334568888988 788775332 232 2222 1 1 2699999999965
No 208
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=85.92 E-value=3.7 Score=28.03 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCCeEEEEECC---------CCchHHHHHHHHhC-----CCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCC
Q 033201 23 NKNPIIVIDNY---------DSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGP 78 (125)
Q Consensus 23 ~~~~I~vid~~---------~~~~~~i~~~l~~~-----g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~ 78 (125)
..+||.||--+ ++....+.+.|++. |+++..+. .|+ .+.+ . . .++|.||.+||.
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45678777422 23334567888877 88765332 232 2222 1 1 369999999996
Q ss_pred C
Q 033201 79 G 79 (125)
Q Consensus 79 ~ 79 (125)
+
T Consensus 82 g 82 (167)
T 1uuy_A 82 G 82 (167)
T ss_dssp S
T ss_pred C
Confidence 5
No 209
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=85.75 E-value=1.6 Score=27.70 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P 99 (125)
..++|+|+|........+.+.|++. ++.+...-.+.. ....+....+|.+|+--.. +...+ .+.+.+++.....|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCC--CCCCHHHHHHHHHccCCCce
Confidence 4578999987555556677888775 666432222211 1122233468988873221 11122 23344444334456
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 86 ii~~s 90 (143)
T 2qv0_A 86 IVFIT 90 (143)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
No 210
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=85.71 E-value=4.4 Score=28.98 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEE-eCCCC------CHHHHhcCCCCEEEECCCCCCcCCchHHH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVY-RNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~-~~~~~------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+. ..+.. ..+.+....+||||+.+...+ +
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~----- 78 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT--D----- 78 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----------
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC--H-----
Confidence 4456787773 3333433 3556677789999877 43211 122333458999999765321 1
Q ss_pred HHHHHh-CCCCCEEEEc
Q 033201 89 QTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 89 ~~I~~~-~~~~PvLGIC 104 (125)
..++.+ +.++|+..+-
T Consensus 79 ~~~~~l~~~~iPvV~~~ 95 (290)
T 3clk_A 79 DNLQLLQSSDVPYCFLS 95 (290)
T ss_dssp -CHHHHHCC--CEEEES
T ss_pred HHHHHHHhCCCCEEEEc
Confidence 122232 4568877653
No 211
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=85.70 E-value=3.1 Score=29.84 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+...+ + . .
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-~---~ 91 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP--E-H---P 91 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT--T-C---H
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--c-H---H
Confidence 45567877732 223332 3556677899999887653211 11222357999999775321 1 1 2
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.++.+ +.++|+.-+
T Consensus 92 ~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 92 FYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHTTTTSSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 33444 456787655
No 212
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=85.39 E-value=4.6 Score=29.63 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=46.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC----CHHHHhcCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCCEEEEchHH--HHHH
Q 033201 40 LCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIG 111 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~----~~~~~~~~~~dgiIi~GG-~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G~--QlLa 111 (125)
+.+.|++.|+++++...++. +.+.+. +||.||+.|. .+...+. ...+.+++ +.++.+++||=.|+ +-..
T Consensus 37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~-~~~~al~~~V~~GgG~vgiH~a~~~~~y~ 113 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKD-EVVERVHRRVLEGMGLIVLHSGHFSKIFK 113 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCH-HHHHHHHHHHHTTCEEEEEGGGGGSHHHH
T ss_pred HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCH-HHHHHHHHHHHcCCCEEEEcccCCcHHHH
Confidence 47788889999988663321 122233 8999998432 1122222 33455555 57889999995553 4456
Q ss_pred HHhCCee
Q 033201 112 EAFGGES 118 (125)
Q Consensus 112 ~a~Gg~v 118 (125)
..+||..
T Consensus 114 ~llGg~f 120 (252)
T 1t0b_A 114 KLMGTTC 120 (252)
T ss_dssp HHHCSCC
T ss_pred hhhCCcc
Confidence 6777653
No 213
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=85.37 E-value=2.7 Score=30.15 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=41.2
Q ss_pred CeEEEEE--CCCCchH----HHHHHHHhCCC-eEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 25 NPIIVID--NYDSFTY----NLCQYMGELGY-HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 25 ~~I~vid--~~~~~~~----~i~~~l~~~g~-~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
.+|.++- ..+.|.. .+.+.+++.|+ ++.+....... .+.+....+||||+.+... ......+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-----~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-----AAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-----GGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-----chhHHHH
Confidence 4666663 2223322 35566777898 88877653211 1122235799999976421 1122344
Q ss_pred HHh-CCCCCEEEEc
Q 033201 92 LEL-GPTVPLFGVC 104 (125)
Q Consensus 92 ~~~-~~~~PvLGIC 104 (125)
+++ +.++|+..+.
T Consensus 78 ~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 78 EKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHTTTCCEEEES
T ss_pred HHHHHCCCcEEEec
Confidence 444 5678887654
No 214
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=85.34 E-value=5.2 Score=30.62 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=44.7
Q ss_pred CCeEEEEEC-CCCchHHH----HHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCC-CcCCchHHHHHHHH
Q 033201 24 KNPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPG-APQDSGISLQTVLE 93 (125)
Q Consensus 24 ~~~I~vid~-~~~~~~~i----~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~-~~~~~~~~~~~I~~ 93 (125)
.++|+++-. ..+.+..+ .+.+++.|+++++++..+.... ++. ++|+||+ |.|- .-.....+..++..
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iii-gsP~y~~~~~~~~k~fld~ 332 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAF-ASPTLNNTMMPSVAAALNY 332 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEE-ECCCBTTBCCHHHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEE-EcCccCcCchHHHHHHHHH
Confidence 468887743 22344444 4455557888988876544443 333 7999998 5543 22223345555554
Q ss_pred h----C-CCCCEEEEc
Q 033201 94 L----G-PTVPLFGVC 104 (125)
Q Consensus 94 ~----~-~~~PvLGIC 104 (125)
+ - .+||+.-+|
T Consensus 333 l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 333 VRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHTTTTTSBEEEEE
T ss_pred HHhhcccCCCEEEEEE
Confidence 2 2 578877554
No 215
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=85.31 E-value=2.3 Score=36.07 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=47.6
Q ss_pred CeEEEEECCC-Cc-------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCc--h---HHHHH
Q 033201 25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDS--G---ISLQT 90 (125)
Q Consensus 25 ~~I~vid~~~-~~-------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~--~---~~~~~ 90 (125)
|+|+|||... .. ...+...|++.|+++.....-+.-...+... ++|.||+.=. .|... . .+.+.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence 5899997654 44 4567889999999887654211111222323 4999998432 23200 1 13455
Q ss_pred HHHhCCCCCEEEEchH
Q 033201 91 VLELGPTVPLFGVCMG 106 (125)
Q Consensus 91 I~~~~~~~PvLGIC~G 106 (125)
||+...++||+-+.-=
T Consensus 79 iR~~~~~iPIi~lTa~ 94 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDR 94 (755)
T ss_dssp HHHHSTTCCEEEEECH
T ss_pred HHHhCCCCCEEEEecC
Confidence 6665557999977543
No 216
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=85.22 E-value=3.3 Score=30.71 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=34.3
Q ss_pred CCCCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 22 NNKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 22 ~~~~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
.+.+||+|+--+.+- ...+.+.|++.|+++..+...+.....+....+|.++.
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 356789998543332 13477889999999998875433233444457888775
No 217
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=85.18 E-value=2.1 Score=29.17 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P 99 (125)
.+.++|+|+|........+.+.|+..|+.+...-.+.. ....+....+|.+|+-=. .+...+ .+.+.+++.. ..|
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~p 87 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAP 87 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCC
Confidence 34568999987555556788889888998752222211 111222346898887321 122222 2345555532 348
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 88 ii~lt 92 (205)
T 1s8n_A 88 IVVLT 92 (205)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87765
No 218
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=85.15 E-value=4.1 Score=29.76 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=50.4
Q ss_pred CCeEEEEECCCC--chHHHHHHHHh---CCCeEEEEeCCCC-----C-----------HHHH---hcCCCCEEEECCCCC
Q 033201 24 KNPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDEL-----T-----------VEEL---KRKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~~~--~~~~i~~~l~~---~g~~~~v~~~~~~-----~-----------~~~~---~~~~~dgiIi~GG~~ 79 (125)
+|||+||+-..+ .++.+.+.++. .|.+++.+..... . .+.+ ...++|+||+.-...
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~ 80 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD 80 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence 479999964332 34456655554 3556655543211 1 0111 124799999965422
Q ss_pred CcCCchHHHHHHHHhCCCCCEEEEchHHHHHHHHhCCeee
Q 033201 80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 80 ~~~~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
+ .+ +.+++. -++||+||.--.-..+...|+++.
T Consensus 81 ~-----~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rig 113 (245)
T 3qvl_A 81 P-----GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFS 113 (245)
T ss_dssp T-----TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred h-----HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEE
Confidence 1 23 667763 249999997655555656787765
No 219
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=84.56 E-value=2.5 Score=28.12 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=19.4
Q ss_pred CCCeEEEEEC-CCCchHHHHHHH-HhC-CCeEE
Q 033201 23 NKNPIIVIDN-YDSFTYNLCQYM-GEL-GYHFE 52 (125)
Q Consensus 23 ~~~~I~vid~-~~~~~~~i~~~l-~~~-g~~~~ 52 (125)
+.++|+|+=+ ..+.+..+.+.+ +.. +.++.
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~ 34 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKDSELK 34 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTTCEEE
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccCCCEE
Confidence 5568888843 235567788888 554 77643
No 220
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=84.42 E-value=3.1 Score=28.38 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=21.0
Q ss_pred CeEEEEECC-CCchHH----HHHHHHh-CCCeEEEEeCC
Q 033201 25 NPIIVIDNY-DSFTYN----LCQYMGE-LGYHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~-~~~~~~----i~~~l~~-~g~~~~v~~~~ 57 (125)
|+|++|... .+.+.. +.+.+++ .|.++++++..
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 578888542 244444 4455566 78999988765
No 221
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=84.38 E-value=0.57 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=33.0
Q ss_pred CCCCeEEEEEC--CCCch----HHHHHHHHhCCCe-EEEEeCCCCC------HHHHhcCCCCEEEECC
Q 033201 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYH-FEVYRNDELT------VEELKRKNPRGVLISP 76 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~-~~v~~~~~~~------~~~~~~~~~dgiIi~G 76 (125)
+.+.+|.++-. .+.|. ..+.+.+++.|++ +.+...+... .+.+....+||||+.+
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 44567887732 22332 2355677889999 7776543211 1122335899999987
No 222
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=84.22 E-value=1.4 Score=33.57 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL 101 (125)
.+++|+|+|........+.+.|++.|+++..........+.+....+|.||+= = ..|... -.+.+.|++...+.|++
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD-~-~mp~~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICD-L-RMPQIDGLELIRRIRQTASETPII 81 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEEC-C-CSSSSCTHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEc-C-CCCCCCHHHHHHHHHhhCCCCcEE
Confidence 34689999875555567888899889876432210001122333578988872 1 112222 23456666655678887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+-
T Consensus 82 ~lt 84 (394)
T 3eq2_A 82 VLS 84 (394)
T ss_dssp EC-
T ss_pred EEE
Confidence 654
No 223
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=84.16 E-value=0.77 Score=29.29 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+...|+..|+.+..........+.+....+|.+|+-=. .+...+ .+.+.+++.. ..|++-
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii~ 80 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIVY 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEEE
Confidence 468999987555556788888888888754432111122223346898887211 111112 2334444433 688887
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ls 82 (136)
T 2qzj_A 81 MT 82 (136)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 224
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=83.90 E-value=6.5 Score=28.77 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+...+ . +
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~---~ 130 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT----E---E 130 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC----H---H
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC----H---H
Confidence 4456787773 3334433 3556677789999887643211 11122357999999775321 1 2
Q ss_pred HHHHh-CCCCCEEEEc
Q 033201 90 TVLEL-GPTVPLFGVC 104 (125)
Q Consensus 90 ~I~~~-~~~~PvLGIC 104 (125)
.+..+ +.++|+.-+.
T Consensus 131 ~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 131 HVEELKKSPVPVVLAA 146 (332)
T ss_dssp HHHHHTTSSSCEEEES
T ss_pred HHHHHHhCCCCEEEEc
Confidence 33343 4568877653
No 225
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=83.87 E-value=0.6 Score=33.69 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=41.9
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCC-CH-------HHHhcCCCCEEEECCCCCCcCCchHHH
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
...+|.++- ..+.|.. .+.+.+++.|+++.+...+.. +. +.+....+||||+.+...+. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~--~~~-- 79 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHA--YEH-- 79 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTS--STT--
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhH--HHH--
Confidence 345777773 2233332 355667778999998876520 21 11223479999998653221 111
Q ss_pred HHHHHhCCCCCEEEE
Q 033201 89 QTVLELGPTVPLFGV 103 (125)
Q Consensus 89 ~~I~~~~~~~PvLGI 103 (125)
.++++..++|+.-+
T Consensus 80 -~~~~~~~~iPvV~~ 93 (304)
T 3o1i_D 80 -NLKSWVGNTPVFAT 93 (304)
T ss_dssp -THHHHTTTSCEEEC
T ss_pred -HHHHHcCCCCEEEe
Confidence 23332267888766
No 226
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=83.86 E-value=0.81 Score=28.07 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG 102 (125)
.++|+++|........+...|+..|+.+............+....+|.+|+--.. +... ....+.+++...+.|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeec--CCCCHHHHHHHHHhhCCCCCEEE
Confidence 4578999876666677888898888876544321111222233468888773221 1101 113455555444577765
Q ss_pred Ec
Q 033201 103 VC 104 (125)
Q Consensus 103 IC 104 (125)
+.
T Consensus 81 ~s 82 (124)
T 1dc7_A 81 MT 82 (124)
T ss_dssp BC
T ss_pred Ee
Confidence 53
No 227
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=83.72 E-value=3.3 Score=29.44 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=40.5
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+...+ ....+
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~ 80 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP----EPLLA 80 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC----HHHHH
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC----HHHHH
Confidence 34457877742 222322 3556667789999887653211 11222357999999765321 22334
Q ss_pred HHHHhCCCCCEEEE
Q 033201 90 TVLELGPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~~~~~PvLGI 103 (125)
.+++ ..++|+..+
T Consensus 81 ~l~~-~~~iPvV~~ 93 (289)
T 1dbq_A 81 MLEE-YRHIPMVVM 93 (289)
T ss_dssp HHHH-TTTSCEEEE
T ss_pred HHHh-ccCCCEEEE
Confidence 4433 246787654
No 228
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=83.69 E-value=4.5 Score=25.38 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcCCch-HHHHHHHH-hC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG 95 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~~~~-~~~~~I~~-~~ 95 (125)
.++|+|+|........+.+.|+..|+. +..........+.+.. ..+|.+++-=. .|...+ ...+.+++ ..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~~ 79 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLG 79 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCC--CCCCChHHHHHHHHhhcC
Confidence 468999987555556677888888875 4333211011122222 46898887211 122222 34566665 34
Q ss_pred CCCCEEEEc
Q 033201 96 PTVPLFGVC 104 (125)
Q Consensus 96 ~~~PvLGIC 104 (125)
...|++-+.
T Consensus 80 ~~~~ii~lt 88 (133)
T 2r25_B 80 YTSPIVALT 88 (133)
T ss_dssp CCSCEEEEE
T ss_pred CCCCEEEEE
Confidence 467888764
No 229
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=83.43 E-value=11 Score=27.48 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCCCeEEEEECC-CCchHH----HHHHHHhC-CCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDNY-DSFTYN----LCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~~-~~~~~~----i~~~l~~~-g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-.. +.|... +.+.+++. |+++.+....... .+.+...++||||+.+.. ......
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-----~~~~~~ 78 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANE-----AAPMTP 78 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-----HHHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----HHHHHH
Confidence 345577777432 223222 44566677 9999887653211 112223579999997642 111223
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.++.+ +.++|+..+
T Consensus 79 ~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 79 IVEEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCeEEEe
Confidence 34443 456787655
No 230
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=83.07 E-value=1.9 Score=27.06 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=40.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
++|+++|........+...|+..|....+...... ..+.+....+|.+|+-=. .+...+ .+.+.|++.....|++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHHCCCCcEE
Confidence 57899987555556677788776622222222111 111222336898887321 122222 3445566544568888
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+.
T Consensus 82 ~ls 84 (133)
T 3b2n_A 82 IVT 84 (133)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 231
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=82.99 E-value=7.1 Score=28.70 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=40.9
Q ss_pred CCCeEEEE--ECCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 23 NKNPIIVI--DNYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 23 ~~~~I~vi--d~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
....|.++ +....|. ..+.+.+++.|+.+.+...+... .+.+....+||||+.+...+ ....+.
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~~ 136 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----EPFERI 136 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHHH
Confidence 44567777 2223333 34667778899999887654211 11223358999999774321 122232
Q ss_pred HHHhCCCCCEEEE
Q 033201 91 VLELGPTVPLFGV 103 (125)
Q Consensus 91 I~~~~~~~PvLGI 103 (125)
+. ..++|+.-+
T Consensus 137 l~--~~~iPvV~~ 147 (339)
T 3h5o_A 137 LS--QHALPVVYM 147 (339)
T ss_dssp HH--HTTCCEEEE
T ss_pred Hh--cCCCCEEEE
Confidence 32 345787655
No 232
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=82.96 E-value=0.61 Score=29.09 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=41.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~ 98 (125)
..++|+++|........+.+.|++.|+ .+............+....+|.+++-=. .+...+ .+.+.+++. ..+.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCccccCC
Confidence 456899998755555667888888887 4432211000111223346888877321 122222 233444432 2467
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
|++-+.
T Consensus 83 ~ii~~s 88 (129)
T 1p6q_A 83 AFIILT 88 (129)
T ss_dssp EEEECC
T ss_pred CEEEEe
Confidence 887664
No 233
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=82.95 E-value=5.4 Score=28.66 Aligned_cols=39 Identities=5% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CH----HHHhcCCCCEEEECCCC
Q 033201 40 LCQYMGELGYHFEVYRNDEL-TV----EELKRKNPRGVLISPGP 78 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~-~~----~~~~~~~~dgiIi~GG~ 78 (125)
+.+.+++.|+.+.+...+.. .. +.+....+||||+.+..
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 32 IGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp HHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred HHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 55677889999988764421 11 11223589999998763
No 234
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=82.83 E-value=0.16 Score=27.43 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=13.7
Q ss_pred CEEEEchHHHHHHHHhC
Q 033201 99 PLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (125)
-..|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 35688999999987755
No 235
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=82.49 E-value=6 Score=28.35 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCCeEEEE-ECCCCchH----HHHHHHHhCCCeEEEEeCCCC-C----HHHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 23 NKNPIIVI-DNYDSFTY----NLCQYMGELGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 23 ~~~~I~vi-d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
...+|.++ +..+.|.. .+.+.+++.|+++.+...+.. . .+.+....+||||+.+...+ . +.++
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~---~~~~ 83 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----T---DELG 83 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----H---HHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----H---HHHH
Confidence 34566555 44333432 355677889999988764321 1 11223357999999875322 1 2333
Q ss_pred HhCCCCCEEEEc
Q 033201 93 ELGPTVPLFGVC 104 (125)
Q Consensus 93 ~~~~~~PvLGIC 104 (125)
.+..++|+.-+-
T Consensus 84 ~~~~~iPvV~i~ 95 (289)
T 3k9c_A 84 ALADRVPALVVA 95 (289)
T ss_dssp HHHTTSCEEEES
T ss_pred HHHcCCCEEEEc
Confidence 332278877653
No 236
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=82.36 E-value=9.1 Score=27.05 Aligned_cols=78 Identities=9% Similarity=0.112 Sum_probs=41.0
Q ss_pred CCCCeEEEEE----CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 22 NNKNPIIVID----NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 22 ~~~~~I~vid----~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+....... .+.+...++||||+.+... ....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~~ 92 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFL----SVDE 92 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSS----CHHH
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----ChHH
Confidence 4456787773 2334433 3556677889999887643211 1122235799999976522 1222
Q ss_pred HHHHHHhCCCCCEEEEc
Q 033201 88 LQTVLELGPTVPLFGVC 104 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGIC 104 (125)
.+.+++ ..++|+.-+-
T Consensus 93 ~~~l~~-~~~iPvV~~~ 108 (296)
T 3brq_A 93 IDDIID-AHSQPIMVLN 108 (296)
T ss_dssp HHHHHH-TCSSCEEEES
T ss_pred HHHHHh-cCCCCEEEEc
Confidence 222322 1578887653
No 237
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=82.22 E-value=3 Score=30.12 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCeEEEEE-------CCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID-------NYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid-------~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++- ..+.|. ..+.+.+++.|+.+.+...+... .+.+....+||||+.+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 3445787774 122332 23556777899999876543211 11123358999999875
No 238
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=82.05 E-value=6 Score=29.01 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++- ..+.|.. .+.+.+++.|+.+.+...+... .+.+....+||||+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3455787773 2223322 3556677899999887653211 11222357999999775
No 239
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=81.80 E-value=5.7 Score=31.37 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=32.8
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
++...+..+|++.|+++..+. .| +.+.+ .. .++|.||.+||.+ +.+.+...+.++
T Consensus 204 sn~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~al~~a~~~~DlvittGG~s-~g~~D~t~~al~ 266 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINLGIIRD--DPHALRAAFIEADSQADVVISSGGVS-VGEADYTKTILE 266 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEECSSSC-SSSCSHHHHHHH
T ss_pred CchHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhcCCEEEECCCCC-CCCcccHHHHHH
Confidence 344568899999999876432 22 22222 11 2689999999954 444333344444
No 240
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=81.77 E-value=0.79 Score=28.04 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=41.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+++|........+.+.|++.|+.+............+....+|.+++--. .+...+ ...+.+++ ....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~~~~ii~~ 78 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CCCCcEEEE
Confidence 57999987555556678888888887654432111111222236898876221 111112 23344443 345788766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 s 79 (121)
T 1zh2_A 79 S 79 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 241
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=81.77 E-value=1.4 Score=31.78 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=39.7
Q ss_pred CeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCC-----HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
.+|.++-. .+.|. ..+.+.+++.|+++.+....+.. .+.+...++||||+.+.. .......+++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-----~~~~~~~~~~ 77 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPD-----PKLGSAIVAK 77 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSC-----GGGHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----chhhHHHHHH
Confidence 45666632 22332 23556777789999877653111 112223579999997642 1122233444
Q ss_pred h-CCCCCEEEE
Q 033201 94 L-GPTVPLFGV 103 (125)
Q Consensus 94 ~-~~~~PvLGI 103 (125)
+ +.++|+.-+
T Consensus 78 ~~~~~iPvV~~ 88 (306)
T 8abp_A 78 ARGYDMKVIAV 88 (306)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCcEEEe
Confidence 3 456777544
No 242
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=81.71 E-value=6.2 Score=27.65 Aligned_cols=73 Identities=11% Similarity=0.260 Sum_probs=39.3
Q ss_pred eEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCC-CCCHH-------HHhcCC-CCEEEECCCCCCcCCchHHHHH
Q 033201 26 PIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRND-ELTVE-------ELKRKN-PRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 26 ~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~-~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
+|.++ +..+.|.. .+.+.+++.|+++.+...+ ..+.+ .+...+ +||||+.+.. ..... +.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~--~~~~~---~~ 76 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS--AEDLT---PS 76 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS--TTTTH---HH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC--HHHHH---HH
Confidence 56666 23333432 3556777889999887632 12221 222246 9999997742 11122 23
Q ss_pred HHHh-CCCCCEEEE
Q 033201 91 VLEL-GPTVPLFGV 103 (125)
Q Consensus 91 I~~~-~~~~PvLGI 103 (125)
++++ +.++|+..+
T Consensus 77 ~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 77 VAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCcEEEE
Confidence 3333 446777655
No 243
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=81.68 E-value=11 Score=29.97 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHh--------------cCCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~-~~~~~--------------~~~~dgiIi~GG~ 78 (125)
...++|+||..+.+--..+.++|.+.|+++...+..... .+.+. ..++|.||+|+|-
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 445789999887655545899999999999887643111 01110 1258999999884
No 244
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=81.63 E-value=3.9 Score=29.58 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCCCeEEEEECC-------CCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCc
Q 033201 22 NNKNPIIVIDNY-------DSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 22 ~~~~~I~vid~~-------~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~ 84 (125)
+...+|.++-.. +.|.. .+.+.+++.|+.+.+...+... .+.+....+||||+.+...+ .
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~---~ 96 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD---D 96 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT---C
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC---c
Confidence 455678887332 22322 3556677789999877543211 11122358999999875321 1
Q ss_pred hHHHHHHHHhCCCCCEEEE
Q 033201 85 GISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 85 ~~~~~~I~~~~~~~PvLGI 103 (125)
...+.++ ..++|+.-+
T Consensus 97 -~~~~~l~--~~~iPvV~i 112 (305)
T 3huu_A 97 -PIEHLLN--EFKVPYLIV 112 (305)
T ss_dssp -HHHHHHH--HTTCCEEEE
T ss_pred -HHHHHHH--HcCCCEEEE
Confidence 2222232 345777654
No 245
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=81.62 E-value=3.9 Score=29.64 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=34.1
Q ss_pred CCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 24 ~~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
+|+|+|+..+.+. ...+.+.+++.|+++..+..++.....+...++|.++..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 4789998654331 235778899999999888765333333333468887754
No 246
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=81.49 E-value=2.8 Score=31.26 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=40.6
Q ss_pred CCCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+....|.++-. ...|. ..+.+.+++.|+.+.+...+.... +.+....+||||+.+... ...
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----~~~--- 140 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH----TEQ--- 140 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC----CHH---
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC----CHH---
Confidence 34456777732 22232 235667788999998876542111 112235899999976432 122
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.+..+ ..++|+.-|
T Consensus 141 ~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 141 TIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHCCSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 23333 456888766
No 247
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=81.43 E-value=6.3 Score=28.04 Aligned_cols=55 Identities=11% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCCeEEEE--EC-CCCchHH----HHHHHHhC-CCeEEEEeC--CCCCH-------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVI--DN-YDSFTYN----LCQYMGEL-GYHFEVYRN--DELTV-------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vi--d~-~~~~~~~----i~~~l~~~-g~~~~v~~~--~~~~~-------~~~~~~~~dgiIi~GG 77 (125)
...+|.++ +. .+.|... +.+.+++. |+.+.+... +..+. +.+...++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 44567666 32 3444433 55666777 888877532 11122 2233458999999865
No 248
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=81.34 E-value=2.3 Score=28.50 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=29.3
Q ss_pred CeEEEEE-CCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVID-NYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid-~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
++++|+= ...+.+..+.+.+.+ .|. +++++.++....++. ++|.||+
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~--~~d~ii~ 50 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFN--SFTKVIL 50 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHT--TCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHh--hCCEEEE
Confidence 4666662 233456667777654 576 777776533445554 7899988
No 249
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=81.17 E-value=2.3 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=30.2
Q ss_pred CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 25 ~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
++|.++- ....|.. .+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566663 2223322 35566777899998776432111 1222357999999764
No 250
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=80.86 E-value=3.2 Score=29.63 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=40.8
Q ss_pred CCCCCeEEEEEC---CCCchH----HHHHHHHhCCCeEEEEeC--CCCC----HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 21 KNNKNPIIVIDN---YDSFTY----NLCQYMGELGYHFEVYRN--DELT----VEELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 21 ~~~~~~I~vid~---~~~~~~----~i~~~l~~~g~~~~v~~~--~~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
.+...+|.++-. .+.|.. .+.+.+++.|+++.+... +... .+.+....+||||+.+.. ...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~- 81 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-----NYD- 81 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-----HHH-
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-----ccc-
Confidence 345567877732 233433 355667778998876542 1111 122233579999997642 111
Q ss_pred HHHHHHhCCCCCEEEE
Q 033201 88 LQTVLELGPTVPLFGV 103 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGI 103 (125)
..+++....++|+.-+
T Consensus 82 ~~~~~~~~~~iPvV~~ 97 (289)
T 3g85_A 82 LEYLNKASLTLPIILF 97 (289)
T ss_dssp HHHHHHCCCSSCEEEE
T ss_pred HHHHHhccCCCCEEEE
Confidence 2333334677888765
No 251
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=80.61 E-value=0.85 Score=35.96 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCeEEEEECCCCc-----hHHHHHHHHhC--CCeEEEEeCC------C-----------------CCHHHHhcCCCCEEE
Q 033201 24 KNPIIVIDNYDSF-----TYNLCQYMGEL--GYHFEVYRND------E-----------------LTVEELKRKNPRGVL 73 (125)
Q Consensus 24 ~~~I~vid~~~~~-----~~~i~~~l~~~--g~~~~v~~~~------~-----------------~~~~~~~~~~~dgiI 73 (125)
.++|+||-+...- ...+.++|++. |+++.+-+.. . ...+++. .++|.+|
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVI 119 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIV-NRTDLLV 119 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHH-HHCSEEE
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhcc-cCCCEEE
Confidence 4679999764321 23467888887 7766432100 0 0011121 2579999
Q ss_pred ECCCCCCcCCchHHHHHHHHh-CCCC-CEEEEchH
Q 033201 74 ISPGPGAPQDSGISLQTVLEL-GPTV-PLFGVCMG 106 (125)
Q Consensus 74 i~GG~~~~~~~~~~~~~I~~~-~~~~-PvLGIC~G 106 (125)
..|| ++.+....+.+ ..++ |+|||=.|
T Consensus 120 vlGG------DGTlL~aa~~~~~~~vpPiLGIN~G 148 (388)
T 3afo_A 120 TLGG------DGTILHGVSMFGNTQVPPVLAFALG 148 (388)
T ss_dssp EEES------HHHHHHHHHTTTTSCCCCEEEEECS
T ss_pred EEeC------cHHHHHHHHHhcccCCCeEEEEECC
Confidence 9999 44456666766 4567 89999776
No 252
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=80.55 E-value=15 Score=27.01 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCeEEEEECC--C-CchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhc--CCCCEEEECCCCCCcCCchHHH
Q 033201 24 KNPIIVIDNY--D-SFTY----NLCQYMGELGYHFEVYRNDELT------VEELKR--KNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 24 ~~~I~vid~~--~-~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~--~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
.++|.++-.. + .|.. .+.+.+++.|+++.+...+... .+++.. .++||||+.+. . ....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~-----~~~~ 76 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-Q-----YVAP 76 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-S-----SHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-h-----hhHH
Confidence 3577777432 2 2322 3556677789999888654211 112222 48999999652 1 1223
Q ss_pred HHHHHh-CCCCCEEEEc
Q 033201 89 QTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 89 ~~I~~~-~~~~PvLGIC 104 (125)
..++++ +.++|+.-+.
T Consensus 77 ~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 77 QILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHhCCCcEEEEc
Confidence 556665 6788988764
No 253
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=80.46 E-value=2.7 Score=30.85 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=31.2
Q ss_pred CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG 77 (125)
+.++|.++- ..+.|. ..+.+.+++.|+++.+......+. +.+...++||||+.+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456788773 222232 235566777899987752211221 1222358999999764
No 254
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=80.39 E-value=7.1 Score=24.87 Aligned_cols=79 Identities=11% Similarity=0.182 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhc-------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVLE 93 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~-------~~~dgiIi~GG~~~~~~~~-~~~~~I~~ 93 (125)
.++|+++|........+...|++.|+...+...... ....+.. ..+|.+|+-=. .+...+ .+.+.|++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIKQ 85 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHHHHHh
Confidence 468999987555556678888888874333332211 1112221 25898887221 122222 34455555
Q ss_pred hC--CCCCEEEEc
Q 033201 94 LG--PTVPLFGVC 104 (125)
Q Consensus 94 ~~--~~~PvLGIC 104 (125)
.. .+.|++-+.
T Consensus 86 ~~~~~~~piiils 98 (149)
T 1i3c_A 86 NPDLKRIPVVVLT 98 (149)
T ss_dssp CTTTTTSCEEEEE
T ss_pred CcCcCCCeEEEEE
Confidence 32 468888764
No 255
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=80.27 E-value=3 Score=29.83 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=23.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566777899998876432111 1122357999999763
No 256
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=80.20 E-value=3.1 Score=26.43 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=40.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHh--CCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~--~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~P 99 (125)
+++|+|+|........+...|+. .|+.+...-.+.. ....+....+|.+|+-=. .+... ..+.+.+++.....|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~~~~~~ 79 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCS 79 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCc
Confidence 36899998654444556666653 5666542222211 112223346898876221 12112 234455665445688
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 80 ii~ls 84 (141)
T 3cu5_A 80 VIFMS 84 (141)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87664
No 257
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=79.80 E-value=8.7 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=20.4
Q ss_pred CCeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeCC
Q 033201 24 KNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~---~~~~~~i~~~l~~---~g~~~~v~~~~ 57 (125)
++||++|... .+++..+.+++.+ .|.++++++..
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~ 41 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYD 41 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 4689988542 3555555555433 47888877653
No 258
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=79.69 E-value=3.8 Score=29.33 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
+.+|.++- ..+.|.. .+.+.+++.|+++.++.....+. +.+...++||||+.+. +.......
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~-----~~~~~~~~ 78 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN-----DANVLEPV 78 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS-----CHHHHHHH
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----ChHHHHHH
Confidence 35677773 2223322 35566777899887553221222 1222357999999764 11222233
Q ss_pred HHHh-CCCCCEEEEc
Q 033201 91 VLEL-GPTVPLFGVC 104 (125)
Q Consensus 91 I~~~-~~~~PvLGIC 104 (125)
++++ +.++|+.-+.
T Consensus 79 ~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 79 FKKARDAGIVVLTNE 93 (303)
T ss_dssp HHHHHHTTCEEEEES
T ss_pred HHHHHHCCCeEEEEe
Confidence 4443 3457766543
No 259
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=79.68 E-value=1.9 Score=30.58 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~ 89 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+. + . +
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-~---~ 76 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-E---N 76 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-H---H
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-h---H
Confidence 34456777732 223332 3556677899999888754211 11122358999999771 1 2 2
Q ss_pred HHH-Hh-CCCCCEEEE
Q 033201 90 TVL-EL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~-~~-~~~~PvLGI 103 (125)
.++ .+ +.++|+.-+
T Consensus 77 ~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 77 IIENTLTDHHIPFVFI 92 (277)
T ss_dssp HHHHHHHHC-CCEEEG
T ss_pred HHHHHHHcCCCCEEEE
Confidence 233 33 456888654
No 260
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=79.62 E-value=2.9 Score=25.96 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh-CCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~-~~~~P 99 (125)
+++|+++|........+.+.|++. |+.+...-.+.. ....+....+|.+++--. .+...+ ...+.+++. ....|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCc
Confidence 468999987544556677888876 666532222211 112222336898887322 121122 344556553 34567
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 80 ii~ls 84 (130)
T 1dz3_A 80 VIMLT 84 (130)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76553
No 261
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=79.47 E-value=7.1 Score=27.31 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=32.9
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCC
Q 033201 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (125)
Q Consensus 24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~ 78 (125)
+.+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 34677773 2223332 3556777899999988754211 112223589999998753
No 262
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=79.45 E-value=1.3 Score=32.99 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=32.8
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH------HHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dgiIi~GG 77 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+. ... .+....+||||+.+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 34456877732 223322 35567777899999887653 111 122347999999875
No 263
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=79.12 E-value=10 Score=27.03 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCCeEEEEEC--CC--CchHH----HHHHHHhCCCeEEEEeCCCC--CHHH----HhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDN--YD--SFTYN----LCQYMGELGYHFEVYRNDEL--TVEE----LKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~--~~--~~~~~----i~~~l~~~g~~~~v~~~~~~--~~~~----~~~~~~dgiIi~GG 77 (125)
+...+|.++-. .+ .|... +.+.+++.|+++.+...+.. ...+ +....+||||+.+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 44567877722 12 34333 55667778999987754311 1111 22358999999764
No 264
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=78.80 E-value=6.4 Score=27.92 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCeEEEEEC--C--CCchH----HHHHHHHhCCCeEEEEeCC-CCCH-------HHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 24 KNPIIVIDN--Y--DSFTY----NLCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 24 ~~~I~vid~--~--~~~~~----~i~~~l~~~g~~~~v~~~~-~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+.+|.++-. . +.|.. .+.+.+++.|+++.+...+ ..+. +.+...++||||+.+... ...
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~--~~~--- 79 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY--EKT--- 79 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT--TTT---
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--HHh---
Confidence 456777732 2 23332 2456677789999877542 1221 122235799999977532 111
Q ss_pred HHHHHHh-CCCCCEEEE
Q 033201 88 LQTVLEL-GPTVPLFGV 103 (125)
Q Consensus 88 ~~~I~~~-~~~~PvLGI 103 (125)
.+.++++ +.++|+..+
T Consensus 80 ~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 80 YDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp HHHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 1234433 456777654
No 265
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=78.53 E-value=3.2 Score=31.81 Aligned_cols=74 Identities=16% Similarity=0.353 Sum_probs=39.3
Q ss_pred CCCCeEEEEE-CCCCchH----HHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201 22 NNKNPIIVID-NYDSFTY----NLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (125)
Q Consensus 22 ~~~~~I~vid-~~~~~~~----~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~ 94 (125)
+...+|.|+- ..+.|.. .+.+.+++.|+.+.+...+.. ..+.+....+||||+.. ... +.++.+
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~------~~~---~~~~~l 93 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF------DDK---QIEQAL 93 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET------TCH---HHHHHH
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec------CCh---HHHHHH
Confidence 4445677773 2222322 355667778999988764321 12333345799999921 111 334444
Q ss_pred -CCCCCEEEEc
Q 033201 95 -GPTVPLFGVC 104 (125)
Q Consensus 95 -~~~~PvLGIC 104 (125)
+.++|+.-|.
T Consensus 94 ~~~~iPvV~i~ 104 (412)
T 4fe7_A 94 ADVDVPIVGVG 104 (412)
T ss_dssp TTCCSCEEEEE
T ss_pred hhCCCCEEEec
Confidence 5678987664
No 266
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=78.51 E-value=17 Score=26.53 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCCCeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~----~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
+...+|.++-. ...|.. .+.+.+++.|+++.+...+.... +.+....+||||+.+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34567777733 233332 35567788999998887542111 1122358999999775
No 267
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=78.48 E-value=2.7 Score=28.73 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P 99 (125)
.+++|+|+|........+...|+..+ +.+...-.+.. ....+....+|.+|+--. .|...+ .+.+.+++.....|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLN--MPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETT--STTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCc
Confidence 44689999875545556777887764 55422222210 111222336898887221 122222 34455665445678
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
++-+.
T Consensus 82 ii~ls 86 (215)
T 1a04_A 82 IVVFS 86 (215)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87664
No 268
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=78.00 E-value=1.9 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=23.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
..+++|+++|........+...|+..|+++...
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 37 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTV 37 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 346789999875444566778888889887544
No 269
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=77.88 E-value=9.9 Score=27.92 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=42.2
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCCCCCcCCchHHH
Q 033201 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
+...+|.++-. .+.|.. .+.+.+++.|+++.+...+. +.+ .+....+||||+.+... .....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~----~~~~~ 130 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQKRVDGLLVMCSEY----PEPLL 130 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHH
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCCCC----ChHHH
Confidence 45567877732 223322 35566778999998876532 221 22235799999976532 12223
Q ss_pred HHHHHhCCCCCEEEE
Q 033201 89 QTVLELGPTVPLFGV 103 (125)
Q Consensus 89 ~~I~~~~~~~PvLGI 103 (125)
+.+++ ..++|+.-+
T Consensus 131 ~~l~~-~~~iPvV~~ 144 (340)
T 1qpz_A 131 AMLEE-YRHIPMVVM 144 (340)
T ss_dssp HHHHT-TTTSCEEEE
T ss_pred HHHHh-hCCCCEEEE
Confidence 33332 246887654
No 270
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=77.84 E-value=3.2 Score=32.09 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
++|+|+|........+...|+..|+++..........+.+....+|.||+-=. .|...+ .+.+.|++...+.|++-+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~--mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLL--LPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 47999987555556788888888998765432111112233347898886211 122222 344556655566888766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 T 79 (387)
T 1ny5_A 79 T 79 (387)
T ss_dssp E
T ss_pred e
Confidence 4
No 271
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=77.72 E-value=10 Score=25.51 Aligned_cols=78 Identities=13% Similarity=-0.089 Sum_probs=39.7
Q ss_pred CeEEEEEC-CCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCc-hHHHHHHHHh----C
Q 033201 25 NPIIVIDN-YDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL----G 95 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~i~~~l~~-~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~-~~~~~~I~~~----~ 95 (125)
|+|+|+-+ ..+.+..+.+.+.+ .+ ..+++++.......++. ++|.||+ |.|- ...+. ..+.+++..+ -
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l~--~~d~ii~-g~pt~~~G~~p~~~~~f~~~l~~~~l 77 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLE--AYDILLL-GIPTWYYGEAQCDWDDFFPTLEEIDF 77 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHHH--TCSEEEE-ECCEETTTEECHHHHHHHHHHTTCCC
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHhh--hCCEEEE-EEeecCCCcChHHHHHHHhhhhhccc
Confidence 56777733 23445667666644 23 24666665433445554 7999988 4432 21122 2244455433 2
Q ss_pred CCCCEEEEch
Q 033201 96 PTVPLFGVCM 105 (125)
Q Consensus 96 ~~~PvLGIC~ 105 (125)
.++++.-+|.
T Consensus 78 ~gk~vavfg~ 87 (175)
T 1ag9_A 78 NGKLVALFGC 87 (175)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 3566554443
No 272
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=77.15 E-value=2.4 Score=29.19 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
+++|+++|........+...|+..| .+.... +..+... ..+|.+|+-=. .+...+ .+.+.+++...+.|+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~----~~~~al~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~i 74 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFL----TGEDFLNDEEAFHVVVLDVM--LPDYSGYEICRMIKETRPETWV 74 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEES----SHHHHHHCCSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEEC----CHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence 4689999875555566788888877 544332 2222211 46888877221 122222 344556654467888
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 75 i~lt 78 (220)
T 1p2f_A 75 ILLT 78 (220)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 273
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=77.10 E-value=4 Score=30.11 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=46.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHhcCCCCEEEE---CC-CCCCcCCchHHHHHHHHhCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLI---SP-GPGAPQDSGISLQTVLELGP 96 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dgiIi---~G-G~~~~~~~~~~~~~I~~~~~ 96 (125)
....+|+++|-.......+...|+..|+.+. ....-...++.+....+|.||+ ++ |. +--...+.|++..
T Consensus 158 ~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~m----dG~e~~~~ir~~~- 232 (286)
T 3n0r_A 158 ELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGS----SGIDAVKDILGRM- 232 (286)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSC----CTTTTTHHHHHHT-
T ss_pred cCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHhcC-
Confidence 3456899997644445667888999999887 4432111122233457998886 22 21 1112345666655
Q ss_pred CCCEEEEc
Q 033201 97 TVPLFGVC 104 (125)
Q Consensus 97 ~~PvLGIC 104 (125)
++||+.+-
T Consensus 233 ~~piI~lT 240 (286)
T 3n0r_A 233 DVPVIFIT 240 (286)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEe
Confidence 79998764
No 274
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=77.04 E-value=10 Score=28.69 Aligned_cols=82 Identities=13% Similarity=0.005 Sum_probs=44.4
Q ss_pred CCCeEEEEECC-CCchHHH----HHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCC-CcCCchHHHHHHHH-
Q 033201 23 NKNPIIVIDNY-DSFTYNL----CQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-APQDSGISLQTVLE- 93 (125)
Q Consensus 23 ~~~~I~vid~~-~~~~~~i----~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~-~~~~~~~~~~~I~~- 93 (125)
..++++++-.. .+.+..+ .+.+.+.|+++++++..+...+++. ..++|+||+ |.|- +-.....+..++..
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iii-gsP~y~~~~~~~~k~~ld~l 333 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIAL-GAPTIYDEPYPSVGDLLMYL 333 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCEETTEECTHHHHHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEE-ECccccccchHHHHHHHHHh
Confidence 34677777432 2334444 4455557889998887644444221 137999998 5542 11112234444443
Q ss_pred --h-C---CCCCEEEEch
Q 033201 94 --L-G---PTVPLFGVCM 105 (125)
Q Consensus 94 --~-~---~~~PvLGIC~ 105 (125)
. . .+||+.-+|.
T Consensus 334 ~~~~~~~l~~k~~~~~~~ 351 (404)
T 2ohh_A 334 RGLKFNRTLTRKALVFGS 351 (404)
T ss_dssp HHHCGGGTCCEEEEEEEE
T ss_pred hhccccccCCCEEEEEEe
Confidence 2 2 5788775543
No 275
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=76.94 E-value=2.5 Score=31.09 Aligned_cols=75 Identities=8% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCC--CCEEEECCCCCCcCCchHHHH
Q 033201 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKN--PRGVLISPGPGAPQDSGISLQ 89 (125)
Q Consensus 24 ~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~--~dgiIi~GG~~~~~~~~~~~~ 89 (125)
..+|.++-. .+.|.. .+.+.+++.|+++.+....... .+.+...+ +||||+.+.. ......
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~-----~~~~~~ 79 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND-----SADARV 79 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS-----HHHHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC-----HHHHHH
Confidence 456777732 223322 3556677789999887653211 11122346 9999997642 111123
Q ss_pred HHHHh-CCCCCEEEE
Q 033201 90 TVLEL-GPTVPLFGV 103 (125)
Q Consensus 90 ~I~~~-~~~~PvLGI 103 (125)
.++++ +.++|+..+
T Consensus 80 ~~~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 80 IVEACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 33333 345776655
No 276
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=76.50 E-value=4.9 Score=26.77 Aligned_cols=78 Identities=12% Similarity=-0.017 Sum_probs=40.6
Q ss_pred CeEEEEEC-CCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCc-hHHHHHHHHh----C
Q 033201 25 NPIIVIDN-YDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL----G 95 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~i~~~l~~-~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~-~~~~~~I~~~----~ 95 (125)
|+|+|+-+ ..+.+..+.+.+.+ .+ .++++++......+++. ++|.||+ |.|- .-... ..+.+++..+ -
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~p~y~~g~~p~~~~~fl~~l~~~~l 78 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLN--DYQYLII-GCPTLNIGELQSDWEGLYSELDDVDF 78 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGGG--GCSEEEE-EEEEETTTEECHHHHHHHTTGGGCCC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHHh--hCCEEEE-EEeeCCCCcCCHHHHHHHHHhhhcCc
Confidence 57777743 23455666666644 22 25677776543444554 6899988 4432 11112 2234455433 1
Q ss_pred CCCCEEEEch
Q 033201 96 PTVPLFGVCM 105 (125)
Q Consensus 96 ~~~PvLGIC~ 105 (125)
.++++.-+|.
T Consensus 79 ~~k~~~~f~t 88 (169)
T 1obo_A 79 NGKLVAYFGT 88 (169)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 4566655544
No 277
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=76.16 E-value=4.7 Score=28.39 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+...++||+|+.+...+ ....+.+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l 78 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS----QRTHQLL 78 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC----HHHHHHH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHH
Confidence 34677773 2223322 3556777899998877643211 11223357999999765321 2222333
Q ss_pred HHhCCCCCEEEE
Q 033201 92 LELGPTVPLFGV 103 (125)
Q Consensus 92 ~~~~~~~PvLGI 103 (125)
+ +.++|+.-+
T Consensus 79 ~--~~~iPvV~~ 88 (275)
T 3d8u_A 79 E--ASNTPVLEI 88 (275)
T ss_dssp H--HHTCCEEEE
T ss_pred H--hCCCCEEEE
Confidence 3 235777655
No 278
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=75.50 E-value=3.2 Score=30.95 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
...+|.++- ..+.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+.
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345677773 2223322 3556677799999887653211 11122357999999765
No 279
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=75.34 E-value=5.3 Score=26.15 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=41.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
.++|+|+|........+.+.|++.+....+...... ....+....+|.||+-=. ..-.+.-.+.+.|++... .|++
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~-l~~~~g~~l~~~lr~~~~-~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIE-MPNLNGIEALKLIMKKAP-TRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSS-CSSSCHHHHHHHHHHHSC-CEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCC-CCCCCHHHHHHHHHhcCC-ceEE
Confidence 357999987554556678888877644333222211 112223347998887322 111122234455665433 7777
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 103 ~~s~ 106 (164)
T 3t8y_A 103 MVSS 106 (164)
T ss_dssp EEES
T ss_pred EEec
Confidence 6653
No 280
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=75.25 E-value=4.9 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=23.1
Q ss_pred CCCEEEECCCCCCcC-CchHHHHHHHHh---CCCCCEEEEchH
Q 033201 68 NPRGVLISPGPGAPQ-DSGISLQTVLEL---GPTVPLFGVCMG 106 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~-~~~~~~~~I~~~---~~~~PvLGIC~G 106 (125)
.+|+||+ +.|.--. -...+..+|.++ -.+||++-++.|
T Consensus 84 ~aD~iI~-~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~G 125 (191)
T 1t0i_A 84 ALDIIVF-VTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYG 125 (191)
T ss_dssp TCSEEEE-EEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEEE
T ss_pred hCCEEEE-EeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 7899998 5553222 233456677664 257887766654
No 281
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=74.84 E-value=6.1 Score=28.36 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCCCCeEEEEE--CC----C-CchHHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 21 KNNKNPIIVID--NY----D-SFTYNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 21 ~~~~~~I~vid--~~----~-~~~~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+...+|.++- .. . .....+.+.+++.|+++.+...+... .+.+....+||||+.+.
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34556787772 22 2 22334667788899999888754211 11122358999999764
No 282
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=74.04 E-value=1.6 Score=27.78 Aligned_cols=82 Identities=9% Similarity=0.125 Sum_probs=42.9
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCC-CCHHHHhcC-CCCEEEECCCCCCcCCchHHHHHHHHhCCC
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~-~~~~~~~~~-~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~ 97 (125)
++...+|+++|........+.+.|++. |+.+...-.+. .....+... .+|.+|+-=.... .+.-.+.+.|++...
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~-~~g~~~~~~lr~~~~- 87 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPV-MDGMEFLRHAKLKTR- 87 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCC-CTTCHHHHHHHHHCC-
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCC-
Confidence 356678999987555556678888877 66653222221 111223334 6999888322111 112234555665432
Q ss_pred CCEEEEc
Q 033201 98 VPLFGVC 104 (125)
Q Consensus 98 ~PvLGIC 104 (125)
.|++-+.
T Consensus 88 ~~iiil~ 94 (145)
T 3kyj_B 88 AKICMLS 94 (145)
T ss_dssp CEEC-CB
T ss_pred CCeEEEE
Confidence 5665554
No 283
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=73.61 E-value=11 Score=25.51 Aligned_cols=36 Identities=11% Similarity=-0.217 Sum_probs=21.0
Q ss_pred CCCEEEECCCCCCcCC-chHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQD-SGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~-~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+||.||+ |.|---.. ...+..++.++ -.++++.-+|
T Consensus 87 ~yD~iil-g~Pvy~g~~~~~~~~fl~~~~l~gk~v~~f~ 124 (171)
T 4ici_A 87 TYDVVFI-GYPIWWDLAPRIINTFIEGHSLKGKTVVPFA 124 (171)
T ss_dssp GCSEEEE-EEECBTTBCCHHHHHHHHHSCCTTSEEEEEE
T ss_pred HCCEEEE-ecccccCCchHHHHHHHHHcCCCcCEEEEEE
Confidence 7999998 55432222 33467788775 2456654443
No 284
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=73.28 E-value=6.6 Score=27.75 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++- ..+.|.. .+.+.+++.|+++.+...++. ..+.+....+|||| .+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 3446777773 3333433 355677889999988865411 12233345899999 554
No 285
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=73.12 E-value=3.2 Score=31.93 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=44.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~PvLGI 103 (125)
++|+|+|........+.+.|++.|+.+.....-....+.+....+|.||+= =. .|. +--.+.+.|++.....||+-+
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD-i~-mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLD-VW-MPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEE-SE-ETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEe-CC-CCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 479999865555567888899999987654321111222333578987761 00 011 111245666665556788765
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 T 79 (368)
T 3dzd_A 79 T 79 (368)
T ss_dssp E
T ss_pred e
Confidence 4
No 286
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=73.01 E-value=3.9 Score=29.35 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEe--CCCCC------HHHHhcCCCCEEEECCC
Q 033201 40 LCQYMGELGYHFEVYR--NDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~--~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+.+.+++.|+++.+.. .+... .+.+....+||||+.+.
T Consensus 23 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5566777899998876 32111 11222357999999764
No 287
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=71.81 E-value=9.6 Score=26.14 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=37.3
Q ss_pred CCCCCeEEEEECC-CCchHHHHHHHHh-CCCeEEEEeC-CCCCH---HHHhcCCCCEEEECCCCCCcCC-chHHHHHHHH
Q 033201 21 KNNKNPIIVIDNY-DSFTYNLCQYMGE-LGYHFEVYRN-DELTV---EELKRKNPRGVLISPGPGAPQD-SGISLQTVLE 93 (125)
Q Consensus 21 ~~~~~~I~vid~~-~~~~~~i~~~l~~-~g~~~~v~~~-~~~~~---~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~ 93 (125)
++..++|+||-.- .+.+..+.+.+.+ .+.+..-+.. ++.+. +++. ++|+||+ |+|--... ...+..++.+
T Consensus 3 ~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~~~~~~l~--~~D~ii~-gsP~y~g~~~~~~k~fld~ 79 (193)
T 3d7n_A 3 TNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALD--AADAIIF-GTPTYMGGPSWQFKKFADA 79 (193)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHH--HCSEEEE-EEEEETTEECHHHHHHHHH
T ss_pred CCCCCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCHhHHHHHH--HCCEEEE-EeCccCCCccHHHHHHHHH
Confidence 3456788888542 2445556665543 3333221211 11221 2333 6999998 55431111 2334455543
Q ss_pred h--------CCCCCEEEEc
Q 033201 94 L--------GPTVPLFGVC 104 (125)
Q Consensus 94 ~--------~~~~PvLGIC 104 (125)
+ -.+||+.-++
T Consensus 80 ~~~~~~~~~l~gK~~~~f~ 98 (193)
T 3d7n_A 80 SSKPWFSAKWQDKVFGGFT 98 (193)
T ss_dssp THHHHHTTTTTTCEEEEEE
T ss_pred hhhhccccccCCCEEEEEE
Confidence 2 2467765444
No 288
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=70.82 E-value=6.5 Score=26.13 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=39.2
Q ss_pred CeEEEEEC-CCCchHHHHHHHHh-CC--CeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCch-HHHHHHHHh----
Q 033201 25 NPIIVIDN-YDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG-ISLQTVLEL---- 94 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~i~~~l~~-~g--~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~~-~~~~~I~~~---- 94 (125)
|+|+|+-+ ..+.+..+.+.+.+ .+ +.+++++......+++. ++|.||+ |.|- .-...+ .+..++..+
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~pty~~g~~p~~~~~f~~~l~~~~ 77 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLN--AYDYLII-GCPTWNVGELQSDWEGIYDDLDSVN 77 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGG--GCSEEEE-ECCEETTTEECHHHHHHGGGGGGSC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHh--hCCEEEE-EecccCCCcCCHHHHHHHHHhhhhc
Confidence 46676632 22445666666644 33 35777775433334443 6899988 4442 111122 233444432
Q ss_pred CCCCCEEEEc
Q 033201 95 GPTVPLFGVC 104 (125)
Q Consensus 95 ~~~~PvLGIC 104 (125)
-.++|+.-+|
T Consensus 78 l~gk~~~~f~ 87 (169)
T 1czn_A 78 FQGKKVAYFG 87 (169)
T ss_dssp CTTCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 2456765555
No 289
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=69.89 E-value=13 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=18.1
Q ss_pred CeEEEEECC---CCchHHHHHHHHhCCCeEEEEe
Q 033201 25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 25 ~~I~vid~~---~~~~~~i~~~l~~~g~~~~v~~ 55 (125)
|+|++|... .+.+..+.+.+.+ +++++.+.
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~ 36 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIY 36 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEE
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEE
Confidence 588888643 2667777777755 34444443
No 290
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=69.88 E-value=17 Score=26.13 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+.+.+++.|+++.+......+. +.+....+||||+.+... .... ..++++ +.++|+..+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~---~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP--TAVI---PTIKKALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST--TTTH---HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--HHHH---HHHHHHHHCCCeEEEeC
Confidence 5566777899998764322222 122235799999976521 1211 233333 3568877653
No 291
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=69.42 E-value=5.7 Score=31.25 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=31.0
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
++...+..+|++.|+++..+. .| +.+.+ .. .++|.||.+||.+ +.+.+...+.+++
T Consensus 207 sN~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al~~ 270 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIFMGVARD--DKESLKALIEKAVNVGDVVVISGGAS-GGTKDLTASVIEE 270 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHH
T ss_pred chHHHHHHHHHhCCCeEEEEEEeCC--CHHHHHHHHHHHhhCCCEEEEcCCCC-CCCcccHHHHHHh
Confidence 344568899999999876432 22 22222 11 2589999999954 3433333444443
No 292
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=69.10 E-value=1.7 Score=34.69 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~ 79 (125)
+.|||+|+..+ .....+.+.|.+.|.++.+++.+....+.+. ..+|..++.|-..
T Consensus 2 ~~M~iiI~G~G-~vG~~la~~L~~~~~~v~vId~d~~~~~~~~-~~~~~~~i~Gd~~ 56 (461)
T 4g65_A 2 NAMKIIILGAG-QVGGTLAENLVGENNDITIVDKDGDRLRELQ-DKYDLRVVNGHAS 56 (461)
T ss_dssp CCEEEEEECCS-HHHHHHHHHTCSTTEEEEEEESCHHHHHHHH-HHSSCEEEESCTT
T ss_pred CcCEEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HhcCcEEEEEcCC
Confidence 57898888763 4456788999889999999987633333333 2467666666543
No 293
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=68.99 E-value=27 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=20.8
Q ss_pred CeEEEEECC---CCchHHHHH----HHHhC-CCeEEEEeCC
Q 033201 25 NPIIVIDNY---DSFTYNLCQ----YMGEL-GYHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~---~~~~~~i~~----~l~~~-g~~~~v~~~~ 57 (125)
|+|++|... .+.+..+.+ .+++. |.++++++..
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 588888543 255555444 44445 9999888654
No 294
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=68.74 E-value=43 Score=26.79 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HHHHh---------------cCCCCEEEECCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------RKNPRGVLISPGP 78 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~---------------~~~~dgiIi~GG~ 78 (125)
..++|++|.-+++--..+.++|.+.|+++...+....+ .+.+. ..++|.||+|+|-
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 45789999876544445889999999999887653211 11111 0257999999884
No 295
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=68.56 E-value=5.9 Score=29.22 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCeEEEEeCCC------CCHHHHhcCCCCEEEECCCCCCcC-C----------chHHHHHHHHh-CCCCCE
Q 033201 39 NLCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLISPGPGAPQ-D----------SGISLQTVLEL-GPTVPL 100 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~------~~~~~~~~~~~dgiIi~GG~~~~~-~----------~~~~~~~I~~~-~~~~Pv 100 (125)
.+.+.|+..+++++.++.++ .+.+++. +||.||++.=..+.. - .....+.|+++ .++--+
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgL 114 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALA--CYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGL 114 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHHh--cCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEE
Confidence 48899999999999998752 1234444 799999963322111 0 11125777774 445666
Q ss_pred EEE
Q 033201 101 FGV 103 (125)
Q Consensus 101 LGI 103 (125)
++|
T Consensus 115 i~~ 117 (248)
T 3soz_A 115 LMI 117 (248)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 296
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=68.31 E-value=10 Score=25.45 Aligned_cols=48 Identities=4% Similarity=0.131 Sum_probs=26.8
Q ss_pred CeEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vi-d~~~~~~~~i~~----~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
++++|+ ....+.+..+.+ .+.+.|.++++++.++....++. ++|.||+
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~ 62 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIA--SEKLLIV 62 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGG--GCSEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhc--cCCeEEE
Confidence 356655 223344554444 45556888888776433344443 6898888
No 297
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=67.46 E-value=3.1 Score=28.98 Aligned_cols=79 Identities=10% Similarity=0.145 Sum_probs=42.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL 101 (125)
++|+|+|........+...|+..| +.+...-.+.. ....+....+|.+|+--. .+...+ .+.+.+++...+.|++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVR--LPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSE--ETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHHhCCCCcEE
Confidence 579999875555566778888776 55432222210 111222346898887211 111122 2345555545568888
Q ss_pred EEch
Q 033201 102 GVCM 105 (125)
Q Consensus 102 GIC~ 105 (125)
-+.-
T Consensus 80 ~lt~ 83 (225)
T 3c3w_A 80 ILTS 83 (225)
T ss_dssp EGGG
T ss_pred EEEC
Confidence 7653
No 298
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=66.69 E-value=38 Score=25.39 Aligned_cols=78 Identities=8% Similarity=-0.021 Sum_probs=42.7
Q ss_pred CCeEEEEECC-CCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHh--
Q 033201 24 KNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-- 94 (125)
Q Consensus 24 ~~~I~vid~~-~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-- 94 (125)
.++++|+-.. .+.+.. +.+.+++.|.++++++.......++. ..++|++|+.-+...-.....+..++.++
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~ 331 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh
Confidence 4788877432 233444 44455567888988887544444431 13799999843322222333455555442
Q ss_pred --CCCCCEE
Q 033201 95 --GPTVPLF 101 (125)
Q Consensus 95 --~~~~PvL 101 (125)
-.++++.
T Consensus 332 ~~l~~k~~~ 340 (402)
T 1e5d_A 332 LRPQNKIGG 340 (402)
T ss_dssp TCCCSCEEE
T ss_pred cccCCCEEE
Confidence 2456654
No 299
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=66.60 E-value=27 Score=24.57 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCCeEEEEECC-CCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNY-DSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~-~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~ 78 (125)
+...+|.++-.. +.|.. .+.+.+++.|+++.+...+... .+.+....+||||+.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 344567777432 22322 2456677789999887653211 112223579999998764
No 300
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=65.97 E-value=5.5 Score=31.47 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=33.1
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchHHHHHH
Q 033201 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
++...+..+|++.|+++..+. .| +.+.+ .. .++|.||.+||. ++.+.+...+.+
T Consensus 208 sN~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlVittGG~-s~g~~D~t~~al 269 (419)
T 2fts_A 208 SNRSTLLATIQEHGYPTINLGIVGD--NPDDLLNALNEGISRADVIITSGGV-SMGEKDYLKQVL 269 (419)
T ss_dssp CHHHHHHHHHHTTTCCEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEESCC-SSSCCHHHHHHH
T ss_pred CchHHHHHHHHHCCCEEEEEeecCC--CHHHHHHHHHHHHhcCCEEEEcCCC-cCCCcccHHHHH
Confidence 344568899999999875432 22 22222 11 258999999995 445554445555
No 301
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=65.82 E-value=4.9 Score=28.97 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEchHHHHHHHHh
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEAF 114 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~PvLGIC~G~QlLa~a~ 114 (125)
+.|+|.++-||++.+-..--....+- +..++|++||+. ++.++...
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~~ 113 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKSC 113 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHTC
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHhhc
Confidence 68999999999875432211233333 256799999997 66666543
No 302
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=65.74 E-value=10 Score=23.99 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=29.1
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECC
Q 033201 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~G 76 (125)
+||+++ ++.+. ...+.+++++.|+++++...+....++.. .++|.+++++
T Consensus 4 kkIll~-Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~-~~~Dvil~~p 58 (106)
T 1e2b_A 4 KHIYLF-SSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKG-QNADVVLLGP 58 (106)
T ss_dssp EEEEEE-CSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHH-HHCSEEEECT
T ss_pred cEEEEE-CCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc-cCCCEEEEcc
Confidence 467766 32222 23466788889998877654322233321 2689877754
No 303
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.32 E-value=17 Score=24.56 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=34.5
Q ss_pred CCCCeEEEEECC-C--Cc-hHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNY-D--SF-TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~-~--~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG 77 (125)
+...+|++.--. + .. ...+...|+..|+++.....+ .+.+++ ...++|.|.+|..
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEee
Confidence 455677666221 1 11 234667889999999766544 455554 2358999999765
No 304
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=65.30 E-value=11 Score=26.91 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCCCeEEEEE----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCchHH---HHH
Q 033201 22 NNKNPIIVID----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGIS---LQT 90 (125)
Q Consensus 22 ~~~~~I~vid----~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~~~---~~~ 90 (125)
....+|++-- .++--...+...|+..|+++.-.-.+ .+.+++ ...++|.|.+||+.......... .+.
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHH
Confidence 3456766652 22211344667889999998766554 455554 23589999996654332222223 344
Q ss_pred HHHhC--CCCCEE--EEchHHHHHHHHhCCeee
Q 033201 91 VLELG--PTVPLF--GVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 91 I~~~~--~~~PvL--GIC~G~QlLa~a~Gg~v~ 119 (125)
+++.. .++|++ |-... |-.+...|+..+
T Consensus 169 l~~~~~~~~v~v~vGG~~~~-~~~a~~iGad~~ 200 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVS-DKWIEEIGADAT 200 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCC-HHHHHHHTCCBC
T ss_pred HHHcCCCCCCEEEEECCCCC-HHHHHHhCCeEE
Confidence 44432 245643 33343 456677776544
No 305
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=63.90 E-value=17 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=30.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 40 LCQYMGELGYHFEVYRNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+.+.+++.|+++.+...... ..+.+...++||||+.+...+ + ..++.+ +.++|+..+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 21 IEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT--E-----RFEEGRLPTERPVVLVD 85 (276)
T ss_dssp HHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------------CCSCSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC--H-----HHHHHHhhcCCCEEEEe
Confidence 55667778999877643211 122233357999999775322 1 234444 4678887664
No 306
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=63.70 E-value=12 Score=25.21 Aligned_cols=48 Identities=6% Similarity=0.080 Sum_probs=28.3
Q ss_pred CeEEEEEC-CCCchHHHHHHHHh-CC--CeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVIDN-YDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~i~~~l~~-~g--~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
++|+|+-. ..+.+..+.+.+.+ .+ +++++++.++...+++. ++|.||+
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~iil 52 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDFA--QYQFLIL 52 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--TCSEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHHh--cCCEEEE
Confidence 35666632 23556778877755 33 34555665433445554 6999988
No 307
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=62.88 E-value=13 Score=24.79 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=44.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI 103 (125)
+++|+|+|........+...|+..|+.+....... +.+ ...+|.||+-=. .|...+.+...+++.....|++-+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~---~al-~~~~dlvl~D~~--mp~~~g~l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFTSIF--QNRHHDEIAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEEECC--SSTHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCch---hhC-CCCCCEEEEeCC--CCccchHHHHHHhccCCCCCEEEE
Confidence 46899998765556678888888899887554321 112 236888876221 122112234444443356888876
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 86 t 86 (196)
T 1qo0_D 86 V 86 (196)
T ss_dssp E
T ss_pred E
Confidence 5
No 308
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=62.83 E-value=11 Score=23.41 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=38.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI 103 (125)
.+|+++|........+...|+.. +.+............+....+|.+|+-=. .+...+ .+.+.+++.....|++-+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47899986544445567777654 66543321100111223346888876211 121222 344555554445777766
Q ss_pred c
Q 033201 104 C 104 (125)
Q Consensus 104 C 104 (125)
.
T Consensus 79 s 79 (139)
T 2jk1_A 79 T 79 (139)
T ss_dssp E
T ss_pred e
Confidence 3
No 309
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=62.55 E-value=39 Score=24.47 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=50.8
Q ss_pred CCCCeEEEEECCC---Cc-hHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 22 NNKNPIIVIDNYD---SF-TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 22 ~~~~~I~vid~~~---~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
....+|++.--.+ .. ...+...|+..|+++.....+ .+.+++ ...++|.|.+|..... ......+++++
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~--~~~~~~~~i~~ 197 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTT--TMYAFKEVNDM 197 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTT--TTTHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccC--CHHHHHHHHHH
Confidence 4456777763221 12 334667889999999776544 344443 2348999999876322 22233344444
Q ss_pred h---CCCCCEEEEchH-HHHHHHHhCCeee
Q 033201 94 L---GPTVPLFGVCMG-LQCIGEAFGGESS 119 (125)
Q Consensus 94 ~---~~~~PvLGIC~G-~QlLa~a~Gg~v~ 119 (125)
+ ..++||+-=..+ .+-.+...|+...
T Consensus 198 l~~~~~~~~v~vGG~~~~~~~~~~igad~~ 227 (258)
T 2i2x_B 198 LLENGIKIPFACGGGAVNQDFVSQFALGVY 227 (258)
T ss_dssp HHTTTCCCCEEEESTTCCHHHHHTSTTEEE
T ss_pred HHhcCCCCcEEEECccCCHHHHHHcCCeEE
Confidence 3 334665422111 2445566666443
No 310
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=62.38 E-value=6.3 Score=28.90 Aligned_cols=94 Identities=6% Similarity=0.090 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCC---CCHHHH----h-cCCCCEEEECCCCCCcCCchHHH
Q 033201 20 SKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE---LTVEEL----K-RKNPRGVLISPGPGAPQDSGISL 88 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~~---~~~~~~----~-~~~~dgiIi~GG~~~~~~~~~~~ 88 (125)
.+-.+++|+|.-...... ..+.+.|++.|+++..+|.-. .+.+.+ . ..+||.||++...+ ...+.
T Consensus 17 ~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na----V~~~~ 92 (286)
T 1jr2_A 17 IEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA----VEAAE 92 (286)
T ss_dssp -----CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH----HHHHH
T ss_pred hhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH----HHHHH
Confidence 344678998886542222 568899999999987766421 122221 1 14799999976422 12222
Q ss_pred HHHHH--------------hCCCCCEEEEchHHHHHHHHhCCee
Q 033201 89 QTVLE--------------LGPTVPLFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 89 ~~I~~--------------~~~~~PvLGIC~G~QlLa~a~Gg~v 118 (125)
+.+.+ + .+++++.|--+-.-..+.+|-++
T Consensus 93 ~~l~~~~~~~~~~~d~~~~l-~~~~i~aVG~~Ta~aL~~~G~~~ 135 (286)
T 1jr2_A 93 LCLEQNNKTEVWERSLKEKW-NAKSVYVVGNATASLVSKIGLDT 135 (286)
T ss_dssp HHHHHTTCHHHHHHHTHHHH-HHSEEEECSHHHHHHHHHTTCCC
T ss_pred HHHHhccccccchhhHHHHh-ccCcEEEECHHHHHHHHHcCCCc
Confidence 22221 2 24678877776555557788665
No 311
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=62.27 E-value=32 Score=23.01 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=20.4
Q ss_pred CeEEEEECC----CCchHHHHH----HHHhCC--CeEEEEeCC
Q 033201 25 NPIIVIDNY----DSFTYNLCQ----YMGELG--YHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~----~l~~~g--~~~~v~~~~ 57 (125)
|+|++|... .+++..+.+ .+++.| .++++++..
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 588888542 245544444 455555 888888764
No 312
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=62.01 E-value=4.1 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G 106 (125)
.++|.+|..|| ++.+...++.+ . ++|++||=.|
T Consensus 40 ~~~D~vv~~GG------DGTll~~a~~~~~-~~PilGIn~G 73 (258)
T 1yt5_A 40 VTADLIVVVGG------DGTVLKAAKKAAD-GTPMVGFKAG 73 (258)
T ss_dssp BCCSEEEEEEC------HHHHHHHHTTBCT-TCEEEEEESS
T ss_pred CCCCEEEEEeC------cHHHHHHHHHhCC-CCCEEEEECC
Confidence 47899999999 44456666665 5 8999999766
No 313
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=61.83 E-value=16 Score=24.43 Aligned_cols=36 Identities=6% Similarity=-0.263 Sum_probs=21.7
Q ss_pred CCCEEEECCCCCCcCC-chHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQD-SGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~-~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+||.||+ |.|--... ...+..++.++ -.++++.-+|
T Consensus 78 ~yd~iil-G~P~~~g~~~~~~~~fl~~~~l~gk~v~~f~ 115 (162)
T 3klb_A 78 KYEVLFV-GFPVWWYIAPTIINTFLESYDFAGKIVVPFA 115 (162)
T ss_dssp GCSEEEE-EEECBTTBCCHHHHHHHHTSCCTTCEEEEEE
T ss_pred hCCEEEE-EcccccCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 6899988 55532222 23466788775 3456665555
No 314
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=60.14 E-value=27 Score=25.70 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=30.5
Q ss_pred CCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECC
Q 033201 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (125)
Q Consensus 23 ~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~G 76 (125)
....|.++-. ...|. ..+.+.+++.|+.+.+...+....+ .+....+||||+.+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 4456777732 22232 2355667789999988765322111 22235799999964
No 315
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=59.89 E-value=16 Score=28.00 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=48.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeC-----CCCCHHHHh-----cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRN-----DELTVEELK-----RKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~-----~~~~~~~~~-----~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
-+|.+|...+.....+.+++.+.|.-+- .+.. ...+..|+. +.+-+.|++-|=.....+ .+..+.+++
T Consensus 169 G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-~~~~~~~r~ 247 (334)
T 3mwd_B 169 GSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-YKICRGIKE 247 (334)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-HHHHHHHHT
T ss_pred CCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-HHHHHHHHh
Confidence 3799998766667778888877554332 3322 123444431 124567776422111222 445667776
Q ss_pred hCCCCCEEEEchHH
Q 033201 94 LGPTVPLFGVCMGL 107 (125)
Q Consensus 94 ~~~~~PvLGIC~G~ 107 (125)
...+|||..++-|-
T Consensus 248 ~~~~KPVV~~kaGr 261 (334)
T 3mwd_B 248 GRLTKPIVCWCIGT 261 (334)
T ss_dssp TSCCSCEEEEEECT
T ss_pred hcCCCCEEEEEcCC
Confidence 66789999998764
No 316
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=59.82 E-value=13 Score=23.96 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=25.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
...++|+|+.. +.+...+.+.|.+.|+++.++..+
T Consensus 5 ~~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 5 DICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 34567888876 234567888998899998888755
No 317
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=59.62 E-value=41 Score=23.30 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=50.0
Q ss_pred CCCeEEEEEC---CCCchHHHHHHHHh---CCCeEE-EEeCCCCC--------------HHHHh--cCCCCEEEECCCCC
Q 033201 23 NKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYRNDELT--------------VEELK--RKNPRGVLISPGPG 79 (125)
Q Consensus 23 ~~~~I~vid~---~~~~~~~i~~~l~~---~g~~~~-v~~~~~~~--------------~~~~~--~~~~dgiIi~GG~~ 79 (125)
..|||++|.- ..+++..+.+++.+ .|.+++ +++..+.+ ..++. -...|+||+ +.|.
T Consensus 5 ~~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi-~tP~ 83 (199)
T 4hs4_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI-VTPE 83 (199)
T ss_dssp CCEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE-EECC
T ss_pred CCCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE-EcCc
Confidence 3478998853 34666667766644 366676 54432111 01111 136899998 4443
Q ss_pred -CcCCchHHHHHHHHh-------CCCCCEEEEch--H----------HHHHHHHhCCeeee
Q 033201 80 -APQDSGISLQTVLEL-------GPTVPLFGVCM--G----------LQCIGEAFGGESSK 120 (125)
Q Consensus 80 -~~~~~~~~~~~I~~~-------~~~~PvLGIC~--G----------~QlLa~a~Gg~v~~ 120 (125)
+-.-...++.+|..+ -.+||++-|+. | +..+...+|+++.+
T Consensus 84 Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 84 YNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp BTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECC
T ss_pred cCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcC
Confidence 111223333444332 25788776654 3 12334567777765
No 318
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=59.48 E-value=6.2 Score=28.36 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=28.8
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEchHHHHHHHH
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvLGIC~G~QlLa~a 113 (125)
+.|+|.++=||++.+-..--....+-+ ..++|+.||+. ++.++..
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst-L~a~a~~ 102 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST-LAAMAQA 102 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC-HHHHHHh
Confidence 689999999998763221112233332 46799999997 5555543
No 319
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=58.98 E-value=22 Score=25.36 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=45.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~ 97 (125)
+...+|+|+|........+...|+..|+.+..........+.+... .+|.|++ -= ..|...+ .+.+.|++. ...
T Consensus 122 ~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvll-D~-~mP~~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 122 NQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLV-DY-YMPEIDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp HTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEE-CS-CCSSSCHHHHHHHHHHHCCTTT
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEE-cC-CCCCCCHHHHHHHHHhccCCCC
Confidence 3567999998654445567778888888876553211111222222 3677766 21 1222232 345666663 346
Q ss_pred CCEEEEc
Q 033201 98 VPLFGVC 104 (125)
Q Consensus 98 ~PvLGIC 104 (125)
+||+.+.
T Consensus 200 ~~ii~~s 206 (259)
T 3luf_A 200 LAIIGIS 206 (259)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 8888665
No 320
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=58.61 E-value=10 Score=24.18 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
+++|+|+.. +.....+.+.|.+.|+++.++..+
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECC
Confidence 457888865 234566888888889988887654
No 321
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=58.21 E-value=64 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.+++|+||..+.+-. ...++|.+.|+++...+.
T Consensus 8 ~~k~v~viG~G~sG~-s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 8 ENKKVLVLGLARSGE-AAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTCEEEEECCTTTHH-HHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEeC
Confidence 467899998865433 468999999999998875
No 322
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=57.05 E-value=9.6 Score=29.37 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=43.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~PvL 101 (125)
++|+|+|........+...|+..|+.+..........+.+....+|.||+-= ..|...+ .+.+.|++. ...+||+
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDV--MMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcC--CCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 5799998766666778888988888776543211111222223688877611 1122222 244555553 2467887
Q ss_pred EEc
Q 033201 102 GVC 104 (125)
Q Consensus 102 GIC 104 (125)
-+-
T Consensus 80 ~lt 82 (459)
T 1w25_A 80 LIT 82 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 323
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=56.92 E-value=22 Score=25.25 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=51.5
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHH----hc--CCCCEEEECCCCCCcCCchHHHHHH
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~---~~~~~----~~--~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
+-.+++|+|--.. . ...+.+.|++.|+++..+|.-.. +.+++ .. .+||.||++... ....+.+.+
T Consensus 5 ~l~g~~vlvtr~~-~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~----aV~~~~~~l 78 (261)
T 1wcw_A 5 EEDAVRVAYAGLR-R-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGV----GVRDLLEAG 78 (261)
T ss_dssp ---CCEEEECCST-T-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHH----HHHHHHHHH
T ss_pred CCCCCEEEEeCCC-c-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHH----HHHHHHHHH
Confidence 4467888877432 3 66789999999998865543111 11111 11 269999996542 222233333
Q ss_pred HHhC-------CCCCEEEEchHHHHHHHHhCCee
Q 033201 92 LELG-------PTVPLFGVCMGLQCIGEAFGGES 118 (125)
Q Consensus 92 ~~~~-------~~~PvLGIC~G~QlLa~a~Gg~v 118 (125)
.+.. .+++++.|--+-.-..+.+|-++
T Consensus 79 ~~~~~~~~~~l~~~~i~avG~~Ta~~l~~~G~~~ 112 (261)
T 1wcw_A 79 KALGLDLEGPLAKAFRLARGAKAARALKEAGLPP 112 (261)
T ss_dssp HHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCC
T ss_pred HHhCchHHHHhcCCeEEEECHHHHHHHHHcCCCC
Confidence 3221 23678777666655566777654
No 324
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=56.81 E-value=18 Score=26.33 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
+...+|.++-. ...|. ..+.+.+++.|+++.+...+... .+.+....+|||| .+.
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASR 124 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EET
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECC
Confidence 34457877732 22232 23556677899999887653211 1112235799999 654
No 325
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=56.71 E-value=15 Score=26.08 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=35.8
Q ss_pred ccccCCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeC---CCCCHHHHhc--C--CCCEEEECCCCCC
Q 033201 16 DDKKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRN---DELTVEELKR--K--NPRGVLISPGPGA 80 (125)
Q Consensus 16 ~~~~~~~~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~---~~~~~~~~~~--~--~~dgiIi~GG~~~ 80 (125)
|+.+.+.+.++|+|..-. ++. ..+.+.|.+.|+++..+.- |-...+.+.. . .+|.||-..|...
T Consensus 4 ~~~~~~~~~~~vlVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 75 (292)
T 1vl0_A 4 DKIHHHHHHMKILITGAN-GQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTA 75 (292)
T ss_dssp --------CEEEEEESTT-SHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred cccccccccceEEEECCC-ChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccCC
Confidence 455666777888877543 454 5688888888988877642 2122333321 1 6899998887654
No 326
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=56.16 E-value=25 Score=26.93 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=31.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-cCCCCEEEECC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISP 76 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dgiIi~G 76 (125)
|||++.+..+.....+.+++++.|+++...+.. .+.+.+. ..++|++++.+
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~li~~~ 53 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA-LTSATVDLAEGCSSVSLKP 53 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC-CSTTGGGGGTTCSEEEECC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC-CCHHHHHHhcCCcEEEEcC
Confidence 789988754444455667777888888766532 1211111 14788888753
No 327
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=55.93 E-value=31 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=37.0
Q ss_pred CeEEEEECC---C---CchHHHHHHHHhCCCeEEEEeCCC--CCHHHH-------hcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVIDNY---D---SFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vid~~---~---~~~~~i~~~l~~~g~~~~v~~~~~--~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+|++||-.. . ++...+.+.|++.|+++.+++.-+ .+.+.+ ...++|.||--|| +++.|..+.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~ 110 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKG 110 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHH
Confidence 688888322 1 255667888888999887764211 222222 2357899995555 455555443
No 328
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=55.74 E-value=13 Score=24.07 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=25.3
Q ss_pred CeEEEEE-CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid-~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
++++|+= ...+.+.. +.+.+.+.|+++++++.. ...++ .++|.+|+
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l--~~~d~vi~ 52 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDL--PASGIWLV 52 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSS--CSEEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHc--ccCCeEEE
Confidence 4666662 22234444 445556678888777532 22233 26888887
No 329
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=55.49 E-value=72 Score=25.60 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCCCEEEECCCCCCcCCc--------hHH--HHHHHH-h-CCCCCEE---EEchHHHHH-HHHhCCeeee
Q 033201 67 KNPRGVLISPGPGAPQDS--------GIS--LQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGGESSK 120 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~--------~~~--~~~I~~-~-~~~~PvL---GIC~G~QlL-a~a~Gg~v~~ 120 (125)
...|+|++..|+++.... ..+ ...+.+ . +.++||+ ||..+-.+. +.++|+...-
T Consensus 317 aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 317 AGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp HTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred hCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 478999997777653211 111 122222 2 3479999 898888887 7888876543
No 330
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=55.49 E-value=28 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=38.6
Q ss_pred CeEEEEECCC---Cc-------hHHHHHHHHhCCCeEEEEeCCC----CCHHHHhcCCCCEEEECCCCCCcC
Q 033201 25 NPIIVIDNYD---SF-------TYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 25 ~~I~vid~~~---~~-------~~~i~~~l~~~g~~~~v~~~~~----~~~~~~~~~~~dgiIi~GG~~~~~ 82 (125)
|+|++++.+. +| +-.+.+.+++.|.++.++...+ ...++.+...||.+++-.+.-+.+
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s~nf~ 72 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSSINFF 72 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCCCCCC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEeceeecc
Confidence 5788886432 22 1225678899999999997643 235666656899988866654443
No 331
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=55.43 E-value=54 Score=23.46 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHH--HHh-cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVE--ELK-RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~--~~~-~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~ 98 (125)
.+.+|++|.........+.+..+..|.....-+.-...+. .+. ...+|.+|+.. +..+ ...|++. .-++
T Consensus 67 ~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~D----p~~e---~~ai~EA~~l~I 139 (208)
T 1vi6_A 67 EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVND----PAID---KQAVSEATAVGI 139 (208)
T ss_dssp CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESC----TTTT---HHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEEC----CCcc---hhHHHHHHHhCC
Confidence 4567888865444444566666667776544332111110 011 13588888853 2222 3456664 5679
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
|+.|+|
T Consensus 140 PvIalv 145 (208)
T 1vi6_A 140 PVVALC 145 (208)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999999
No 332
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=55.14 E-value=48 Score=22.93 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=34.4
Q ss_pred CCCeEEEEECCC---Cc-hHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCC
Q 033201 23 NKNPIIVIDNYD---SF-TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~~~---~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG 77 (125)
...+|++.--.+ .. ...+...|+..|+++.....+ .+.+++ ...++|.|.+|..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~-vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD-IEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS-BCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 345776663221 12 244667889999999876654 455554 2348999999875
No 333
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=54.76 E-value=20 Score=22.80 Aligned_cols=73 Identities=3% Similarity=-0.048 Sum_probs=40.0
Q ss_pred CCCeEEEEECCCCchHH----HHHHHHhCCCeEEEEe--CCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-h-
Q 033201 23 NKNPIIVIDNYDSFTYN----LCQYMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L- 94 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~----i~~~l~~~g~~~~v~~--~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~- 94 (125)
..+||+++=..+--+.. +.+..++.|+++++.. ..+ .++.. .+||.+++++ .-.+ ..+-+++ .
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~--~~~~~-~~~DvvLLgP--QV~y----~~~~ik~~~~ 75 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA--HYDIM-GVYDLIILAP--QVRS----YYREMKVDAE 75 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS--CTTTG-GGCSEEEECG--GGGG----GHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH--HHhhc-cCCCEEEECh--HHHH----HHHHHHHHhh
Confidence 35678887443322333 4455566899988853 332 22222 3699999844 2222 2234444 3
Q ss_pred CCCCCEEEEc
Q 033201 95 GPTVPLFGVC 104 (125)
Q Consensus 95 ~~~~PvLGIC 104 (125)
..++||.-|=
T Consensus 76 ~~~ipV~vI~ 85 (108)
T 3nbm_A 76 RLGIQIVATR 85 (108)
T ss_dssp TTTCEEEECC
T ss_pred hcCCcEEEeC
Confidence 4579987663
No 334
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=54.69 E-value=11 Score=26.16 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=30.9
Q ss_pred CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201 25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 25 ~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG 77 (125)
.+|.++- ..+.|.. .+.+.+++.|+.+.+...+... .+.+....+||+|+.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4676663 2223322 3556677789999887653211 11223357999999775
No 335
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=54.20 E-value=37 Score=25.16 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~---~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~ 98 (125)
.+.+|++|..-......+.+..+..|.....-+.-.. +........+|.+|+.. +..+ ...|++. .-++
T Consensus 103 ~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~D----p~~e---~~AI~EA~~lgI 175 (253)
T 3bch_A 103 NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRAD---HQPLTEASYVNL 175 (253)
T ss_dssp SGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESC----TTTT---HHHHHHHHHTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEEC----CCcc---chHHHHHHHhCC
Confidence 3456777754322223344555556665543222111 11111123578888753 2222 3556664 5679
Q ss_pred CEEEEc
Q 033201 99 PLFGVC 104 (125)
Q Consensus 99 PvLGIC 104 (125)
|+.|||
T Consensus 176 PvIalv 181 (253)
T 3bch_A 176 PTIALC 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999998
No 336
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=54.19 E-value=40 Score=25.55 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~P 99 (125)
+.+|++|.........+.+...+.|.....-+.-. ++........+|.||+.. +..+ ...|++. .-++|
T Consensus 71 ~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~D----p~~e---~~AI~EA~~lgIP 143 (295)
T 2zkq_b 71 PADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRAD---HQPLTEASYVNLP 143 (295)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESC----TTTT---HHHHHHHHHHTCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeC----CCcc---hhHHHHHHHhCCC
Confidence 44566665422222334444455565543322110 111111123578877753 2222 3456653 45699
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
+.|||
T Consensus 144 vIalv 148 (295)
T 2zkq_b 144 TIALC 148 (295)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99998
No 337
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=52.71 E-value=41 Score=21.22 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCCeEEEEECCCCch------HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVIDNYDSFT------YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~~~~~~------~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
..+||+++ +..+.. ..+.+.+.+.|+++++........++. ..++|.||.+.-
T Consensus 20 ~~kkIlvv-C~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~-~~~~DlIist~~ 78 (113)
T 1tvm_A 20 SKRKIIVA-CGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-MDGVHLICTTAR 78 (113)
T ss_dssp SSEEEEEE-SCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTS-TTSCSEEEESSC
T ss_pred cccEEEEE-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhc-cCCCCEEEECCc
Confidence 34577776 333332 235567788888765443221112221 136897776543
No 338
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=52.45 E-value=15 Score=25.07 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=34.5
Q ss_pred EEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH--------------------------------HHHHHHHhCCe
Q 033201 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------------------------------LQCIGEAFGGE 117 (125)
Q Consensus 71 giIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G--------------------------------~QlLa~a~Gg~ 117 (125)
-|+++-|..+.. ...+.++.+ ..+++++.|.+| ++-||...||+
T Consensus 115 ivllTDG~~~~~---~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~ 191 (218)
T 3ibs_A 115 IIVITDGENHEG---GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGI 191 (218)
T ss_dssp EEEEECCTTCCS---CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEE
T ss_pred EEEEcCCCCCCC---cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCE
Confidence 466777754332 234555554 678999999888 67888889998
Q ss_pred eeeCCC
Q 033201 118 SSKMSS 123 (125)
Q Consensus 118 v~~~~~ 123 (125)
......
T Consensus 192 ~~~~~~ 197 (218)
T 3ibs_A 192 YVRVDN 197 (218)
T ss_dssp EEEECS
T ss_pred EEECCC
Confidence 776543
No 339
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=51.78 E-value=15 Score=28.70 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=24.1
Q ss_pred chHHHHHHHHhCCCeEEEEe--CCCCCHHHHh------cCCCCEEEECCCCC
Q 033201 36 FTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG 79 (125)
Q Consensus 36 ~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~~------~~~~dgiIi~GG~~ 79 (125)
+...+..+|++.|+++..+. .| +.+.+. ..++|.||.+||.+
T Consensus 212 n~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 212 NSIMLQGLVEKFFGEPILYGVLPD--DESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECS--CHHHHTTHHHHHHHCSEEEECC----
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 34568899999999875432 22 122221 12689999999964
No 340
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=51.50 E-value=43 Score=23.96 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCeEEEEEC-CCCch----HHHHHHHHhCCC----e--EEEEeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCch
Q 033201 24 KNPIIVIDN-YDSFT----YNLCQYMGELGY----H--FEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSG 85 (125)
Q Consensus 24 ~~~I~vid~-~~~~~----~~i~~~l~~~g~----~--~~v~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~ 85 (125)
..+|.|+.. ...|. ..+.+.+++.|+ + +.+...+ ... +.+....+||||++|.+
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~------- 79 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQ-GNPAIAVQIARQFVGENPDVLVGIATP------- 79 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEESHH-------
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECChH-------
Confidence 456777742 22232 236677888999 4 4444433 121 12234589999987631
Q ss_pred HHHHHHHHhCCCCCEEEEc
Q 033201 86 ISLQTVLELGPTVPLFGVC 104 (125)
Q Consensus 86 ~~~~~I~~~~~~~PvLGIC 104 (125)
.. ..+.....++|+..+.
T Consensus 80 ~~-~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 80 TA-QALVSATKTIPIVFTA 97 (302)
T ss_dssp HH-HHHHHHCSSSCEEEEE
T ss_pred HH-HHHHhcCCCcCEEEEe
Confidence 11 1122235678887664
No 341
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.32 E-value=45 Score=23.48 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHh---------------cCCCCEEEECCCCCCc
Q 033201 23 NKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELK---------------RKNPRGVLISPGPGAP 81 (125)
Q Consensus 23 ~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~---------------~~~~dgiIi~GG~~~~ 81 (125)
++|+|+|... ++. ..+.+.|.+.|+++..+.-+......+. ..++|.||-+.|+...
T Consensus 4 m~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~ 76 (286)
T 3ius_A 4 MTGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSG 76 (286)
T ss_dssp -CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred CcCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcccc
Confidence 4578998873 664 5688889888998877643321111110 2358999988886543
No 342
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=51.23 E-value=22 Score=26.95 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv 100 (125)
.+||+|+|........+.+.|++. |+++...-.+.. ..+.+....+|.+++-=. .+...+ ...+.|++.. ..|+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~--mp~~dGlell~~l~~~~-p~pV 79 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVE--MPRMDGLDFLEKLMRLR-PMPV 79 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECC--CSSSCHHHHHHHHHHSS-CCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHhcC-CCcE
Confidence 368999986544456677888875 776432222211 112223346898887211 121122 2344455433 3888
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 80 IvlS 83 (349)
T 1a2o_A 80 VMVS 83 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 343
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=50.74 E-value=52 Score=21.84 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCH-HHHhcCC-CCEEE-ECCCCCCcCCchHHHHHHHHh-CCC
Q 033201 24 KNPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTV-EELKRKN-PRGVL-ISPGPGAPQDSGISLQTVLEL-GPT 97 (125)
Q Consensus 24 ~~~I~vid~~~~~~--~~i~~~l~~~g~~~~v~~~~~~~~-~~~~~~~-~dgiI-i~GG~~~~~~~~~~~~~I~~~-~~~ 97 (125)
..+|.++..+.++. ..+...|...|..+..++.+.... ......+ =|.+| +|-+ + ......+.++.+ +++
T Consensus 39 a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s-G---~t~~~~~~~~~ak~~g 114 (187)
T 3sho_A 39 ADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVW-R---YLRDTVAALAGAAERG 114 (187)
T ss_dssp CSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCS-S---CCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCC-C---CCHHHHHHHHHHHHCC
Confidence 35899998866553 446677788999988876321111 1122122 24433 3333 2 233445666665 578
Q ss_pred CCEEEEch
Q 033201 98 VPLFGVCM 105 (125)
Q Consensus 98 ~PvLGIC~ 105 (125)
.|+++|.-
T Consensus 115 ~~vi~IT~ 122 (187)
T 3sho_A 115 VPTMALTD 122 (187)
T ss_dssp CCEEEEES
T ss_pred CCEEEEeC
Confidence 99999974
No 344
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=50.52 E-value=47 Score=24.57 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~P 99 (125)
+.+|++|.........+.+.....|.....-+.-. ++........+|.+|++. |.. -...|++. .-++|
T Consensus 70 ~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~D----p~~---d~~ai~EA~~l~IP 142 (252)
T 3u5c_A 70 PEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTD----PRS---DAQAIKEASYVNIP 142 (252)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESC----TTT---THHHHHHHHTTTCC
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeC----Ccc---chHHHHHHHHcCCC
Confidence 44666665422222334455555666554322211 111111113578888753 222 23566664 67899
Q ss_pred EEEEc
Q 033201 100 LFGVC 104 (125)
Q Consensus 100 vLGIC 104 (125)
+.|+|
T Consensus 143 ~Ial~ 147 (252)
T 3u5c_A 143 VIALT 147 (252)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 345
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=50.15 E-value=43 Score=24.85 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCCCeEEEEECC---CCchHHHH----HHHHhCCCeEEEEeCCCCC------------HHHHh--cCCCCEEEECCCCC-
Q 033201 22 NNKNPIIVIDNY---DSFTYNLC----QYMGELGYHFEVYRNDELT------------VEELK--RKNPRGVLISPGPG- 79 (125)
Q Consensus 22 ~~~~~I~vid~~---~~~~~~i~----~~l~~~g~~~~v~~~~~~~------------~~~~~--~~~~dgiIi~GG~~- 79 (125)
.+.|||++|.-. .+++..+. +.+++.|+++++++..+.+ ..++. -...|+||+ +.|.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~-aSP~Y 134 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW-CSPER 134 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE-EEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE-EcCcc
Confidence 456889999532 35554444 4456679999988764332 11111 126899998 4442
Q ss_pred CcCCchHHHHHHHHh---------CCCCCEEEEch
Q 033201 80 APQDSGISLQTVLEL---------GPTVPLFGVCM 105 (125)
Q Consensus 80 ~~~~~~~~~~~I~~~---------~~~~PvLGIC~ 105 (125)
+-.-...++.+|..+ -.+||+.-|..
T Consensus 135 n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~t 169 (279)
T 2fzv_A 135 HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQV 169 (279)
T ss_dssp TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEE
T ss_pred ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEE
Confidence 111123345555443 14678665554
No 346
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=50.10 E-value=66 Score=22.83 Aligned_cols=53 Identities=6% Similarity=0.022 Sum_probs=30.9
Q ss_pred CeEEEEECCC--CchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201 25 NPIIVIDNYD--SFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (125)
Q Consensus 25 ~~I~vid~~~--~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG 77 (125)
.+|.++.... .|.. .+.+.+++.|+++.+...+.... +.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677774322 2222 25566777899998876432111 1122347999999765
No 347
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=48.40 E-value=61 Score=21.95 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=20.9
Q ss_pred CeEEEEECC-----CCchHH----HHHHHHhCC--CeEEEEeCC
Q 033201 25 NPIIVIDNY-----DSFTYN----LCQYMGELG--YHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~-----~~~~~~----i~~~l~~~g--~~~~v~~~~ 57 (125)
|+|++|... .+++.. +.+.+++.| .++++++..
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 578888532 355543 444556666 899888765
No 348
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=48.30 E-value=43 Score=23.85 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=37.9
Q ss_pred CeEEEEEC-CCCch----HHHHHHHHhCCC---eEEE--EeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVIDN-YDSFT----YNLCQYMGELGY---HFEV--YRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vid~-~~~~~----~~i~~~l~~~g~---~~~v--~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
.+|.|+.. ...|. ..+.+.+++.|+ ++.+ ...+ ... +.+....+||||+.|.+ ..
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~-------~~ 74 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSE-GDQSKVATMSKQLVANGNDLVVGIATP-------AA 74 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEESHH-------HH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCcH-------HH
Confidence 46777732 12232 346677888999 7554 3332 122 12234579999987631 11
Q ss_pred HHHHHHhCCCCCEEEEc
Q 033201 88 LQTVLELGPTVPLFGVC 104 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGIC 104 (125)
..+.....++|+..+.
T Consensus 75 -~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 75 -QGLASATKDLPVIMAA 90 (295)
T ss_dssp -HHHHHHCSSSCEEEES
T ss_pred -HHHHHcCCCCCEEEEe
Confidence 1222335678887653
No 349
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=47.40 E-value=24 Score=26.95 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=35.8
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------hcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+|++||--. .++...+.+.|++.|+++.+++.- +.+.+.+ ...++|.||--|| +++.|..+.
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~ 106 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCKA 106 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHH
Confidence 688888321 124455777888889988766521 1122222 2347899995555 455555443
No 350
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=47.28 E-value=45 Score=23.34 Aligned_cols=94 Identities=6% Similarity=0.015 Sum_probs=52.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC----CHHH-Hh-cCCCCEEEECCCCCCcCCchHHHHHHHHhCCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL----TVEE-LK-RKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~----~~~~-~~-~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~ 97 (125)
+|||+|--- ......+.+.|++.|+++..+|.-.. ..++ +. ..+||.||++... ....+.+.+.+--.+
T Consensus 1 G~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~----aV~~~~~~l~~~l~~ 75 (240)
T 3mw8_A 1 GMKLLLTRP-EGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTS----AVSFATPWLKDQWPK 75 (240)
T ss_dssp CCCEEECSC-TTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHH----HHHHHHHHHTTCCCS
T ss_pred CCEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHH----HHHHHHHHHHhhCcC
Confidence 467766533 23345789999999998876543211 1111 11 1479999996541 122222333221134
Q ss_pred CCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 98 VPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
++++.|--+-.-..+.+|-+....+
T Consensus 76 ~~~~aVG~~Ta~~L~~~G~~~~~~p 100 (240)
T 3mw8_A 76 ATYYAVGDATADALALQGITAERSP 100 (240)
T ss_dssp SEEEESSHHHHHHHHHTTCCCEECC
T ss_pred CeEEEECHHHHHHHHHcCCCCccCC
Confidence 7787777666666666787665443
No 351
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=47.28 E-value=24 Score=25.29 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=27.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEchHHHHHH
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIG 111 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~PvLGIC~G~QlLa 111 (125)
+.|+|.++=||++..-...-....+. +..++|+.||+. ++.++
T Consensus 55 did~Iav~~GPGsftglRig~~~ak~la~~~~~Pl~~V~~-l~a~a 99 (231)
T 2gel_A 55 EIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVST-LATMA 99 (231)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECH-HHHHH
T ss_pred HCCEEEEEcCCChhHhHHHHHHHHHHHHHHcCCCEEEecc-HHHHH
Confidence 57999999999876321111233333 367899999997 44444
No 352
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=45.35 E-value=44 Score=21.71 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCC-chHHHHHHHHhC-CCCCEEEEchHH
Q 033201 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQD-SGISLQTVLELG-PTVPLFGVCMGL 107 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~~-~~~PvLGIC~G~ 107 (125)
..+...|+..|+++.-.-.+ .+.+++ ...++|.|.+|........ .....+.+++.. +++|+ ++-|.
T Consensus 21 ~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v--~vGG~ 93 (137)
T 1ccw_A 21 KILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL--YVGGN 93 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE--EEEES
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE--EEECC
Confidence 34667889999999755433 345554 2347999999776322111 122445565542 24665 34454
No 353
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.71 E-value=65 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+|.||++. +..+ ...|++. .-++|+.|+|
T Consensus 122 ePdllvV~D----p~~d---~qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 122 EPRLLILTD----PRTD---HQPIKESALGNIPTIAFC 152 (305)
T ss_dssp CCSEEEESC----TTTT---HHHHHHHHHHTCCEEEEE
T ss_pred CCceeEEeC----cccc---hHHHHHHHHcCCCEEEEE
Confidence 467777643 2222 3455553 4569999999
No 354
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=44.43 E-value=81 Score=22.80 Aligned_cols=64 Identities=9% Similarity=-0.083 Sum_probs=35.6
Q ss_pred ccCCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCC------------CCCHHHHh--cCCCCEEEECCCCCCcC
Q 033201 18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRND------------ELTVEELK--RKNPRGVLISPGPGAPQ 82 (125)
Q Consensus 18 ~~~~~~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~------------~~~~~~~~--~~~~dgiIi~GG~~~~~ 82 (125)
+++...+|+|+|.... ++. ..+.+.|.+.|+++..+.-. -...+.+. ..++|.||-..+.....
T Consensus 13 ~~~~~~~~~vlVtGat-G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~ 91 (347)
T 4id9_A 13 GLVPRGSHMILVTGSA-GRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWA 91 (347)
T ss_dssp --------CEEEETTT-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSS
T ss_pred cccccCCCEEEEECCC-ChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcc
Confidence 3444566788877543 454 56888888889988776422 11222222 13799999988866543
No 355
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=44.03 E-value=46 Score=23.71 Aligned_cols=55 Identities=13% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCeEEEEECCC-------CchHHH----HHHHHhCCCeEEEEeCCC-CCHHHH-h-cCCCCEEEECCCCC
Q 033201 24 KNPIIVIDNYD-------SFTYNL----CQYMGELGYHFEVYRNDE-LTVEEL-K-RKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~~~-------~~~~~i----~~~l~~~g~~~~v~~~~~-~~~~~~-~-~~~~dgiIi~GG~~ 79 (125)
+|+|++|.... ++...+ .+.+++.|.+++++..++ ...++. . -...|+||+ +.|.
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~-~~P~ 93 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY-QMPA 93 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE-EEEC
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE-ECCh
Confidence 46899985322 233333 344566799999987642 122221 1 136899998 4443
No 356
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.02 E-value=16 Score=25.06 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=43.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCch-HHHHHHHH-h
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSG-ISLQTVLE-L 94 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~-~ 94 (125)
...++|+++|........+...|+. .|+.+.....+ ..+.+ ....+|.+|+-=. .|...+ .+.+.|++ .
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~ 80 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENKPESRSIQMLVIDYS--RISDDVLTDYSSFKHIS 80 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTCSGGGGCCEEEEEGG--GCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHHhh
Confidence 3457899998755556678888874 57776543222 12222 2235888887111 111111 23455565 4
Q ss_pred CCCCCEEEEc
Q 033201 95 GPTVPLFGVC 104 (125)
Q Consensus 95 ~~~~PvLGIC 104 (125)
..+.|++-+.
T Consensus 81 ~~~~~ii~lt 90 (225)
T 3klo_A 81 CPDAKEVIIN 90 (225)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCcEEEEE
Confidence 5568887664
No 357
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=44.00 E-value=76 Score=23.66 Aligned_cols=79 Identities=10% Similarity=0.050 Sum_probs=40.0
Q ss_pred CCeEEEEEC-CCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCC-CcCCchHHHHHHHH--
Q 033201 24 KNPIIVIDN-YDSFTYNLC----QYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-APQDSGISLQTVLE-- 93 (125)
Q Consensus 24 ~~~I~vid~-~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~-~~~~~~~~~~~I~~-- 93 (125)
.++++++-. ..+.+..+. +.+.+.|.++++++.......++. ..++|++|+ |.|- .-.....+..++..
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-g~p~y~~~~~~~~~~~l~~l~ 329 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSPTINNDILPVVSPLLDDLV 329 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECCCBTTBCCGGGHHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEE-ECCccCccchHHHHHHHHHHh
Confidence 356766633 223344344 445557888888876433343331 126899998 4432 21222233444443
Q ss_pred -h-CCCCCEEEE
Q 033201 94 -L-GPTVPLFGV 103 (125)
Q Consensus 94 -~-~~~~PvLGI 103 (125)
. -.++|+.-+
T Consensus 330 ~~~~~~k~~~~~ 341 (398)
T 1ycg_A 330 GLRPKNKVGLAF 341 (398)
T ss_dssp HHCCSSCEEEEE
T ss_pred ccccCCCEEEEE
Confidence 2 256766533
No 358
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=43.92 E-value=52 Score=24.55 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=28.6
Q ss_pred ccccccccccCCC--CCCeEEEEECCCCchH-HHHHHHHhC-CCeEE-EEeCCC---------------CCHHHHh-cCC
Q 033201 10 SKSLYLDDKKSKN--NKNPIIVIDNYDSFTY-NLCQYMGEL-GYHFE-VYRNDE---------------LTVEELK-RKN 68 (125)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~I~vid~~~~~~~-~i~~~l~~~-g~~~~-v~~~~~---------------~~~~~~~-~~~ 68 (125)
|.+|+-+.+.++. ..+||+||..+ .... .+.+.|.+. ++++. +...+. .+.+++. ..+
T Consensus 11 ~~~~~~~~~~~~~~m~~~rigiIG~G-~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~ 89 (350)
T 3rc1_A 11 ENLYFQGHMENPANANPIRVGVIGCA-DIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDD 89 (350)
T ss_dssp ---------------CCEEEEEESCC-HHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTT
T ss_pred cceeeeccCCCCCCCCceEEEEEcCc-HHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCC
Confidence 4455666665553 33689999763 2222 355666665 66664 333331 1233433 236
Q ss_pred CCEEEECC
Q 033201 69 PRGVLISP 76 (125)
Q Consensus 69 ~dgiIi~G 76 (125)
+|.|+|+-
T Consensus 90 ~D~V~i~t 97 (350)
T 3rc1_A 90 VDAVYVPL 97 (350)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 89999854
No 359
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=43.49 E-value=78 Score=25.28 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEeCCCC---------CHHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYRNDEL---------TVEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~v~~~~~~---------~~~~~~~~~~dgiIi~GG 77 (125)
.+++|+|+.. .++=...+.+.|.+.|+++.++++... +.++.. .++|++||.=.
T Consensus 352 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~-~~ad~vvi~t~ 423 (478)
T 3g79_A 352 DGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVV-RNADAIVVLAG 423 (478)
T ss_dssp TTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHH-TTCSEEEECSC
T ss_pred CCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHH-hcCCEEEEecC
Confidence 5679999942 222234588899999999999876421 112211 47999998543
No 360
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=42.60 E-value=35 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=35.1
Q ss_pred EEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH-------HHHHHHHhCCeeeeCCC
Q 033201 71 GVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG-------LQCIGEAFGGESSKMSS 123 (125)
Q Consensus 71 giIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G-------~QlLa~a~Gg~v~~~~~ 123 (125)
.|+|+-|..+..........++....++++..|.+| ++-||...||+......
T Consensus 183 IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~d 242 (464)
T 4fx5_A 183 AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIRD 242 (464)
T ss_dssp EEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEESS
T ss_pred EEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcCC
Confidence 466777754322222344455555678999888887 78899999999876543
No 361
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=42.54 E-value=53 Score=23.23 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-----CC--HHH-Hh-cCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-----LT--VEE-LK-RKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-----~~--~~~-~~-~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
-.++||+|--- ......+.+.|++.|+++..+|.-. .. +.+ +. ..+||.||++.. +-...+.+.+.
T Consensus 4 L~g~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~----~aV~~~~~~l~ 78 (254)
T 4es6_A 4 MSGWRLLLTRP-DEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSK----PAARLGLERLD 78 (254)
T ss_dssp --CCEEEECSC-HHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSH----HHHHHHHHHHH
T ss_pred CCCCEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECH----HHHHHHHHHHH
Confidence 45778875532 2234568899999999987665321 11 111 11 137999999654 22233344444
Q ss_pred Hh--C-CCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201 93 EL--G-PTVPLFGVCMGLQCIGEAFGGESSKMS 122 (125)
Q Consensus 93 ~~--~-~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (125)
+. + .+++++.|--+-.-..+.+|-++.-.+
T Consensus 79 ~~~~~~~~~~i~aVG~~Ta~~L~~~G~~~~~~~ 111 (254)
T 4es6_A 79 RYWPQPPQQTWCSVGAATAAILEAYGLDVTYPE 111 (254)
T ss_dssp HHCSSCCSCEEEESSHHHHHHHHHHTCCEECCS
T ss_pred HhCCCcccCEEEEECHHHHHHHHHcCCCcccCC
Confidence 42 1 346787777665555666687766543
No 362
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.16 E-value=60 Score=20.14 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=27.5
Q ss_pred CeEEEE-ECC--CCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECC
Q 033201 25 NPIIVI-DNY--DSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 25 ~~I~vi-d~~--~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~G 76 (125)
|+|+++ ..+ .+. ...+.+.+.+.|+++++........++.. .++|.|+.+.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~-~~~D~Ii~t~ 59 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV-DRFDVVLLAP 59 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT-TTCSEEEECS
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc-CCCCEEEECC
Confidence 566666 222 122 23466777778887655433222343322 4799887754
No 363
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=42.04 E-value=41 Score=25.85 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=36.7
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHH
Q 033201 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (125)
Q Consensus 25 ~~I~vid~~----~~~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~ 87 (125)
+|++||--. .++...+.+.|++.|+++.+++. . +.+.+.+ ...++|.||--|| +++.|..+.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~ 106 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDCAKA 106 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 678887321 12345577888889998877641 1 1223222 2347999987777 555555443
No 364
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=41.72 E-value=62 Score=25.29 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=41.6
Q ss_pred CCCCeEEEEEC--CCC-c---hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCC
Q 033201 22 NNKNPIIVIDN--YDS-F---TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (125)
Q Consensus 22 ~~~~~I~vid~--~~~-~---~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~ 80 (125)
...+++.||-. +.+ + ...+.+.+++.|-+..++-....+.+.+...++|+.|+.+=|..
T Consensus 262 ~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~iD~fV~vaCPrl 326 (378)
T 3lzd_A 262 MDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFPFEAYVVVACPRV 326 (378)
T ss_dssp TTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTSCCSEEEECSCTHH
T ss_pred hcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCEEEEecCCCc
Confidence 45677877732 222 2 23466777889999888877667788887668999999887754
No 365
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=41.60 E-value=46 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCeEEEEECC---CCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~---~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.++|+||... +.....+.++|.+.|+++..+.+.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~ 49 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPK 49 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCc
Confidence 4579999653 344566888898899986655543
No 366
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=41.38 E-value=85 Score=21.63 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCCeEEEEE---CCCCchHHHHHHHHh---CCCeEEEEeCCCCC----------HHH---Hh--cCCCCEEEECCCCC-C
Q 033201 23 NKNPIIVID---NYDSFTYNLCQYMGE---LGYHFEVYRNDELT----------VEE---LK--RKNPRGVLISPGPG-A 80 (125)
Q Consensus 23 ~~~~I~vid---~~~~~~~~i~~~l~~---~g~~~~v~~~~~~~----------~~~---~~--~~~~dgiIi~GG~~-~ 80 (125)
|.++|+||. ..+++...+.+++.+ .++++++++..+.+ .+. +. -...||+|| ..|. +
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii-~tPeYn 79 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLA-ITPEYN 79 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEE-ECCCBT
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEE-echhhc
Confidence 456788773 234555556666644 47777776532111 011 11 136899888 3322 2
Q ss_pred cCCchHH---HHHHHH-h----CCCCCEEEEch--H----H------HHHHHHhCCeeeeCC
Q 033201 81 PQDSGIS---LQTVLE-L----GPTVPLFGVCM--G----L------QCIGEAFGGESSKMS 122 (125)
Q Consensus 81 ~~~~~~~---~~~I~~-~----~~~~PvLGIC~--G----~------QlLa~a~Gg~v~~~~ 122 (125)
-.-.+.+ .+++.+ . =.+||++-++. | . ..+...+|+.+...+
T Consensus 80 ~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~p 141 (190)
T 3u7r_A 80 RSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSMP 141 (190)
T ss_dssp TBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCCS
T ss_pred ccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccCC
Confidence 1122233 455532 1 25799887763 2 1 112345777776543
No 367
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=41.33 E-value=92 Score=22.19 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCeEEEE-ECCCCchHHHHHHHHh---CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC---CcCC-chHHHHHHHHhC
Q 033201 24 KNPIIVI-DNYDSFTYNLCQYMGE---LGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQD-SGISLQTVLELG 95 (125)
Q Consensus 24 ~~~I~vi-d~~~~~~~~i~~~l~~---~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~---~~~~-~~~~~~~I~~~~ 95 (125)
.++|+|+ ....+.++.+.+.|.+ .|+++.+++.++.+.+++. +++.+|+.-... .+-+ ...+.+.|....
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l~--~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~ 117 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLE--EERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK 117 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGGG--TCSEEEEEEECBTTTBCCGGGHHHHHHHHHCC
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHhc--cCCeEEEEEeccCCCcCCHHHHHHHHHHHhcc
Confidence 3455555 3333445555555433 5888888876644455554 577776632222 1212 223445555421
Q ss_pred ---CC--CCEEEE--------chHHHHHHH---HhCCee
Q 033201 96 ---PT--VPLFGV--------CMGLQCIGE---AFGGES 118 (125)
Q Consensus 96 ---~~--~PvLGI--------C~G~QlLa~---a~Gg~v 118 (125)
.+ .-|||. |...-.|.. .+|++.
T Consensus 118 ~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~ 156 (219)
T 3hr4_A 118 ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQ 156 (219)
T ss_dssp CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEE
T ss_pred hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCE
Confidence 22 346775 655555544 346654
No 368
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=41.16 E-value=23 Score=23.76 Aligned_cols=48 Identities=6% Similarity=0.011 Sum_probs=27.8
Q ss_pred CeEEEEEC-CCCchHHHHHHHHh-CCC--eEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY--HFEVYRNDELTVEELKRKNPRGVLI 74 (125)
Q Consensus 25 ~~I~vid~-~~~~~~~i~~~l~~-~g~--~~~v~~~~~~~~~~~~~~~~dgiIi 74 (125)
++|+|+-. ..+.+..+.+.+.+ .+. ++++++..+...+++. ++|.||+
T Consensus 2 ~kilIiY~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~ 53 (182)
T 2wc1_A 2 AKIGLFFGSDTGTTRKIAKQIKDMFDDEVMAKPLNVNRADVADFM--AYDFLIL 53 (182)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--HCSEEEE
T ss_pred cEEEEEEECCCchHHHHHHHHHHHhcccCceEEEEcccCCHHHHh--hCCeEEE
Confidence 46777732 23456677777754 333 3555554433445554 6899888
No 369
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=41.08 E-value=53 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC---------HH-HHhcCCCCEEEECCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---------VE-ELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~---------~~-~~~~~~~dgiIi~GG 77 (125)
..+||++|.+ ...+.+.|++. .++.++..+..+ .+ ++. ..+|.++++|+
T Consensus 115 ~~~kV~vIG~----~p~l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l-~~~D~v~iTGs 173 (249)
T 3npg_A 115 EIKRIAIIGN----MPPVVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHIL-PEVDGIIASAS 173 (249)
T ss_dssp CCSEEEEESC----CHHHHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHG-GGCSEEEEETT
T ss_pred CCCEEEEECC----CHHHHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhh-ccCCEEEEEee
Confidence 4479999954 55688888887 888888654210 11 122 26899999997
No 370
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=40.68 E-value=39 Score=24.55 Aligned_cols=93 Identities=10% Similarity=-0.026 Sum_probs=52.5
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC------CCCHHHH-hc--CCCCEEEECCCCCCcCCchHHHHHH
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND------ELTVEEL-KR--KNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~------~~~~~~~-~~--~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
+-.+++|+|--.. . ...+.+.|++.|+++..+|.- ...+.+. .. ..||.||++.. +....+.+.+
T Consensus 30 pL~G~~VlvtR~~-~-~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~----naV~~~~~~l 103 (286)
T 3d8t_A 30 DPFTMRIAYAGLR-R-KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTG----VGVRDLLEAG 103 (286)
T ss_dssp ---CCEEEECCSS-C-HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCH----HHHHHHHHHH
T ss_pred CCCCCEEEEeCCC-c-hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECH----HHHHHHHHHH
Confidence 4567888877432 3 667899999999988654321 1122211 11 26999999654 2222233333
Q ss_pred HHhC-------CCCCEEEEchHHHHHHHHhCCeee
Q 033201 92 LELG-------PTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 92 ~~~~-------~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
.+.. .+++++.|--+-.-..+.+|-++.
T Consensus 104 ~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~ 138 (286)
T 3d8t_A 104 KALGLDLEGPLAKAFRLARGAKAARALKEAGLPPH 138 (286)
T ss_dssp HHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCS
T ss_pred HHcCchHHHHhcCCeEEEECHHHHHHHHHcCCCcc
Confidence 3221 246788777766656667786543
No 371
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.63 E-value=45 Score=23.13 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=53.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CH---HHHhcCCCCEEEECCCCCCc----CC---------c
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TV---EELKRKNPRGVLISPGPGAP----QD---------S 84 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~---~~~~~~~~dgiIi~GG~~~~----~~---------~ 84 (125)
.+.++|+++--+......+.+...+.+.++.++..+-. .. .++ ..++|.||--||.... .+ .
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~ 80 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSISIKVTR 80 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCH
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEEEEcCCH
Confidence 35578888876555555566666777778777654310 01 122 3578866655553211 01 1
Q ss_pred hHHHHHHHHh---CCCCCEEEE---chHHHHHHHHhCCeeee
Q 033201 85 GISLQTVLEL---GPTVPLFGV---CMGLQCIGEAFGGESSK 120 (125)
Q Consensus 85 ~~~~~~I~~~---~~~~PvLGI---C~G~QlLa~a~Gg~v~~ 120 (125)
-++.+.|.++ ..++-++|- +.|...++..+|-++..
T Consensus 81 ~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~ 122 (196)
T 2q5c_A 81 FDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKE 122 (196)
T ss_dssp HHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred hHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEE
Confidence 1233444433 233344443 56888899999987664
No 372
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=40.55 E-value=40 Score=23.58 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEE-ECCCCCCcCCchHHHHHHHHh-C--C
Q 033201 24 KNPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVL-ISPGPGAPQDSGISLQTVLEL-G--P 96 (125)
Q Consensus 24 ~~~I~vid~~~~~~--~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiI-i~GG~~~~~~~~~~~~~I~~~-~--~ 96 (125)
..+|.++..+.++. ..+...|.+.|..+..+.........+.. ..=|.+| +|.+ + ......+.++.+ + +
T Consensus 59 a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~S-G---~t~~~i~~~~~ak~~~~ 134 (220)
T 3etn_A 59 KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNS-G---KTREIVELTQLAHNLNP 134 (220)
T ss_dssp CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSS-S---CCHHHHHHHHHHHHHCT
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCC-C---CCHHHHHHHHHHHhcCC
Confidence 67899997755542 34666778889888776532111111111 1224444 4433 2 233445555554 5 7
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
+.|+++|+-
T Consensus 135 Ga~vI~IT~ 143 (220)
T 3etn_A 135 GLKFIVITG 143 (220)
T ss_dssp TCEEEEEES
T ss_pred CCeEEEEEC
Confidence 899999983
No 373
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=40.04 E-value=29 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=21.1
Q ss_pred ccccCCCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEe
Q 033201 16 DDKKSKNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 16 ~~~~~~~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~ 55 (125)
++++.+.++++|+|..-. ++ -..+.+.|.+.|+++..+.
T Consensus 6 ~~~~~~~~~~~vlVTGat-G~iG~~l~~~L~~~g~~V~~~~ 45 (335)
T 1rpn_A 6 HHHHHGSMTRSALVTGIT-GQDGAYLAKLLLEKGYRVHGLV 45 (335)
T ss_dssp ---------CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccccCCeEEEECCC-ChHHHHHHHHHHHCCCeEEEEe
Confidence 345666677888887543 44 3567788888888877653
No 374
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=39.95 E-value=46 Score=25.35 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=34.7
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeC-C-CCCHHHH-------hcCCCCEEEECCCCCCcCCch
Q 033201 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (125)
Q Consensus 25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~ 85 (125)
+|++||--... +...+.+.|++.|+++.+++. . +.+.+.+ ...++|.||--|| +++.|..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~A 114 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFA 114 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHH
Confidence 68888732211 345677888888998877641 1 1233322 2347899995555 3444433
No 375
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=39.94 E-value=42 Score=24.97 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=32.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~-------~~~~~~~~~dgiIi~GG 77 (125)
..++||++|.+. ...+.+.+.+.++.++..+... .+.+. ..+|.+||+|.
T Consensus 139 ~~g~kV~vIG~f-----P~i~~~~~~~~~l~V~E~~p~~g~~p~~~~~~~l-p~~D~viiTgs 195 (270)
T 3l5o_A 139 VKGKKVGVVGHF-----PHLESLLEPICDLSILEWSPEEGDYPLPASEFIL-PECDYVYITCA 195 (270)
T ss_dssp TTTSEEEEESCC-----TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHG-GGCSEEEEETH
T ss_pred cCCCEEEEECCc-----hhHHHHHhcCCCEEEEECCCCCCCCChhHHHHhh-ccCCEEEEEee
Confidence 456899999763 2345566678888888643211 11122 26899999997
No 376
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=39.33 E-value=34 Score=20.43 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=21.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~ 56 (125)
++++|+|+.. +.....+.+.|.+.| +++.++..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEES
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeC
Confidence 3467888865 333456777787788 67666543
No 377
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=39.00 E-value=14 Score=25.79 Aligned_cols=68 Identities=12% Similarity=-0.028 Sum_probs=37.4
Q ss_pred CeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCCC------CCHHHH-h-cCCCCEEEECCCCCCcCC-chHHHHH
Q 033201 25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE------LTVEEL-K-RKNPRGVLISPGPGAPQD-SGISLQT 90 (125)
Q Consensus 25 ~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~~------~~~~~~-~-~~~~dgiIi~GG~~~~~~-~~~~~~~ 90 (125)
|||++|.... ++...+.+.+++.|.++++++..+ ....+. . -...|+||+ +.|.--.. ...+..+
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~-~~P~y~~~~pa~lK~~ 80 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVW-QFPIYWFNCPPLLKQW 80 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEE-EEECBTTBCCHHHHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEE-EcChhhcCCCHHHHHH
Confidence 6788885321 234457777888898888886421 112111 1 137899998 55542122 2334555
Q ss_pred HHH
Q 033201 91 VLE 93 (125)
Q Consensus 91 I~~ 93 (125)
|.+
T Consensus 81 iDr 83 (192)
T 3f2v_A 81 LDE 83 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 378
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=38.94 E-value=36 Score=24.65 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.|+|+|+..+ ....+.+.+++.|+++.++..+
T Consensus 2 ~m~Ililg~g--~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--hHHHHHHHHHhCCCEEEEEECC
Confidence 4789999764 4567889999999999887654
No 379
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=38.35 E-value=93 Score=21.23 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCeEEEEEC---CCCchHHHHHHHHh---CCCeEE-EEeCCCCC------------HHH---Hh--cCCCCEEEECCCCC
Q 033201 24 KNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYRNDELT------------VEE---LK--RKNPRGVLISPGPG 79 (125)
Q Consensus 24 ~~~I~vid~---~~~~~~~i~~~l~~---~g~~~~-v~~~~~~~------------~~~---~~--~~~~dgiIi~GG~~ 79 (125)
.|||++|.- .+++...+.+++.+ .|++++ +++..+.+ .++ +. -...|+||+ +.|.
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~-~sP~ 82 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVI-VTPE 82 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEE-EECC
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEE-Eecc
Confidence 478888842 34666667777755 367777 54433211 011 11 136899998 5543
Q ss_pred C-cCCchHH---HHHHHH----hCCCCCEEEEch--H----------HHHHHHHhCCeeeeC
Q 033201 80 A-PQDSGIS---LQTVLE----LGPTVPLFGVCM--G----------LQCIGEAFGGESSKM 121 (125)
Q Consensus 80 ~-~~~~~~~---~~~I~~----~~~~~PvLGIC~--G----------~QlLa~a~Gg~v~~~ 121 (125)
- -.-...+ .+++.. .-.+||+.-|+. | +..+...+|+.+.+.
T Consensus 83 y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~ 144 (193)
T 3svl_A 83 YNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK 144 (193)
T ss_dssp BTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS
T ss_pred cCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC
Confidence 1 1122333 344432 125788766652 3 123445678877643
No 380
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=38.01 E-value=1.2e+02 Score=22.38 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=32.7
Q ss_pred CCCCeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECC
Q 033201 22 NNKNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (125)
Q Consensus 22 ~~~~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~G 76 (125)
...|||+++-.. +. .-.+.+.|++.|.++.++.. . ..+.+....+..+-+.+
T Consensus 18 ~~~MrIl~~~~~-~~Ghv~~~~~La~~L~~~GheV~v~~~-~-~~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 18 GRHMRVLFVSSP-GIGHLFPLIQLAWGFRTAGHDVLIAVA-E-HADRAAAAGLEVVDVAP 74 (398)
T ss_dssp -CCCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEES-S-CHHHHHTTTCEEEESST
T ss_pred hhcCEEEEEcCC-CcchHhHHHHHHHHHHHCCCEEEEecc-c-hHHHHHhCCCeeEecCC
Confidence 345799998543 21 13478899999999998875 2 33344434566565543
No 381
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=37.95 E-value=32 Score=29.41 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=41.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC------chHHHHHHHHh-CCCCCEEEEc
Q 033201 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD------SGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~------~~~~~~~I~~~-~~~~PvLGIC 104 (125)
+.+.|+..+++++.++.++....+. ..++|.||..|-..+... .+...+.||++ .++--++||.
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~-L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVG 543 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGI-DSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVG 543 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCC-CTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhcCCCceEEecHHHhccccc-cccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeC
Confidence 7889999999999998653211121 248999997663333222 23356888884 6666677764
No 382
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=37.82 E-value=45 Score=22.07 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=42.0
Q ss_pred CeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEE-EECCCCCCcCCchHHHHHHHHh-CCCCC
Q 033201 25 NPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGV-LISPGPGAPQDSGISLQTVLEL-GPTVP 99 (125)
Q Consensus 25 ~~I~vid~~~~~~--~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgi-Ii~GG~~~~~~~~~~~~~I~~~-~~~~P 99 (125)
.+|.++..+.+.. ..+...|...|..+..+.........+.. ..=|.+ ++|-+ + ......+.++.+ +++.|
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s-G---~t~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS-G---ESSEITALIPVLKRLHVP 125 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS-S---CCHHHHHHHHHHHTTTCC
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC-C---CCHHHHHHHHHHHHCCCC
Confidence 4899998765442 34556677778877665422100111111 123444 44433 2 233455666665 67899
Q ss_pred EEEEch
Q 033201 100 LFGVCM 105 (125)
Q Consensus 100 vLGIC~ 105 (125)
+++|+-
T Consensus 126 vi~IT~ 131 (183)
T 2xhz_A 126 LICITG 131 (183)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 999985
No 383
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=37.82 E-value=52 Score=24.34 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=32.6
Q ss_pred cccCCCCCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 17 DKKSKNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 17 ~~~~~~~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
.+.+.+..|||+++-....- .-.+.+.|++.|+++.++.... ..+.+....+..+-+.
T Consensus 13 ~~~~~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~-~~~~~~~~g~~~~~~~ 74 (412)
T 3otg_A 13 SGHIEGRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEG-FAGTLRKLGFEPVATG 74 (412)
T ss_dssp -----CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGG-GHHHHHHTTCEEEECC
T ss_pred cCCcccceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHH-HHHHHHhcCCceeecC
Confidence 34556777999988643211 1247889999999999886532 1222333355555554
No 384
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=37.58 E-value=49 Score=24.53 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=23.7
Q ss_pred CCCCeEEEEEC---CCCchHH----HHHHHHhCCCeEEEEeCC
Q 033201 22 NNKNPIIVIDN---YDSFTYN----LCQYMGELGYHFEVYRND 57 (125)
Q Consensus 22 ~~~~~I~vid~---~~~~~~~----i~~~l~~~g~~~~v~~~~ 57 (125)
...|||+||.. .+|+... +.+.+++.|.++++++..
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 45689999953 2345443 456677889999998764
No 385
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=37.14 E-value=84 Score=20.35 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCCeEEEEECC---CCchHHHHHHHHhCCCeEEEEeCCC---------CCHHHHhcCCCCEEEEC
Q 033201 22 NNKNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRNDE---------LTVEELKRKNPRGVLIS 75 (125)
Q Consensus 22 ~~~~~I~vid~~---~~~~~~i~~~l~~~g~~~~v~~~~~---------~~~~~~~~~~~dgiIi~ 75 (125)
...++|+||... +.....+.++|.+.|+++..+.+.. .+..++. ..+|.++++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~-~~vDlvii~ 76 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELP-KDVDVIVFV 76 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSC-TTCCEEEEC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhC-CCCCEEEEE
Confidence 456789999542 3345568888999999755544321 1233332 257877763
No 386
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=36.74 E-value=58 Score=22.10 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=28.3
Q ss_pred hcCCCCEEEECCCCCCcCC-chHHHHHHHH-hCCCCCEEEEchHHHHHHH
Q 033201 65 KRKNPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGE 112 (125)
Q Consensus 65 ~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~-~~~~~PvLGIC~G~QlLa~ 112 (125)
...++|.||.+..|..... ..+...+.|. ...++|++=-=-++..+..
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 128 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQ 128 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHT
T ss_pred HCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 3457999999988655332 2333344444 3678998754444444443
No 387
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=42.69 E-value=7.4 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=18.3
Q ss_pred CCCeEEEEEC---CCCchHHHHHHHHhC---CCeEEEE-eC
Q 033201 23 NKNPIIVIDN---YDSFTYNLCQYMGEL---GYHFEVY-RN 56 (125)
Q Consensus 23 ~~~~I~vid~---~~~~~~~i~~~l~~~---g~~~~v~-~~ 56 (125)
..|||++|.- .++++..+.+++.+. |++++++ +.
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~g~~v~~i~dl 45 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSI 45 (199)
Confidence 4578888832 124444444444321 7777776 44
No 388
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=36.03 E-value=95 Score=22.76 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEE-eCC--CCC----HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVY-RND--ELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~-~~~--~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..+||++|...+.+ ...+.+.+++.|.++... .+. ... ...+...++|+|++.+.. .+...+.+.+
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~ 218 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVA---GPVANILKDA 218 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 34789988543333 234777888889887533 221 112 223334579999975531 1112233444
Q ss_pred HHhCCCCCEEEEc
Q 033201 92 LELGPTVPLFGVC 104 (125)
Q Consensus 92 ~~~~~~~PvLGIC 104 (125)
++..-+.|++|.-
T Consensus 219 ~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 219 KRLGLKMRHLGAH 231 (392)
T ss_dssp HHTTCCCEEEECG
T ss_pred HHcCCCceEEEec
Confidence 5555568998873
No 389
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=35.99 E-value=73 Score=20.47 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
..+++|+|+.. +.....+.+.|.+.|+++.++..+
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 34578999864 334456888999999998887654
No 390
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=35.84 E-value=1.3e+02 Score=22.10 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=20.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v 53 (125)
+++||+||..++.......+.+.+.+.++.-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVS 32 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 4678999987444455667777777766543
No 391
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.79 E-value=1e+02 Score=21.84 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=18.3
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+|.+|++. |..+ ...|++. .-++|+.|+|
T Consensus 111 ~Pdllvv~D----p~~d---~~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 111 EPDVLIVTD----PRAD---HQAMREAVEIGIPIVALV 141 (202)
T ss_dssp CCSEEEESC----TTTS---HHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEeC----Cccc---hHHHHHHHHcCCCEEEEE
Confidence 467777742 2222 3455553 4569999999
No 392
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=35.69 E-value=1.3e+02 Score=23.68 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=35.1
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHHhC-CCeEEEEeCCCC------CHHHHhcCCCCEEEECCC
Q 033201 23 NKNPIIVIDN---------YDSFTYNLCQYMGEL-GYHFEVYRNDEL------TVEELKRKNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~---------~~~~~~~i~~~l~~~-g~~~~v~~~~~~------~~~~~~~~~~dgiIi~GG 77 (125)
.+++|+|+.. .++=.-.+.+.|.+. |+++.++++... +.++.. .++|++||.=.
T Consensus 314 ~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~~~~~~~~~~~-~~ad~vvi~t~ 383 (431)
T 3ojo_A 314 SGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAV-KDASLVLILSD 383 (431)
T ss_dssp SCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCTTBCSTTHHHH-TTCSEEEECSC
T ss_pred CCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccccccCCHHHHH-hCCCEEEEecC
Confidence 5679999942 122233578889898 999999977421 122222 47999998554
No 393
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=35.51 E-value=1.1e+02 Score=22.31 Aligned_cols=31 Identities=3% Similarity=-0.095 Sum_probs=19.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
+++|+|....+..-..+.+.|.+.|+++..+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence 4678887653323456778887778777655
No 394
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.44 E-value=30 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.++|+|+.+ +.+...+.+.|.+.|+++.++..+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 467888876 345677889999999999888765
No 395
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=35.31 E-value=30 Score=26.54 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=31.8
Q ss_pred cccccccccccCCCCCCeEEEEE-CCCC--------chHHHHHHHHhCCCeEEEEeCC
Q 033201 9 ISKSLYLDDKKSKNNKNPIIVID-NYDS--------FTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~I~vid-~~~~--------~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
|+.-..++.+.....+|||+++- .+.. ....+.+.|.+.|+++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~ 88 (413)
T 2x0d_A 31 IPEITPFNARTSSIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTD 88 (413)
T ss_dssp CGGGCCCCEEECCCCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESS
T ss_pred chhhcccccccCCCCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEec
Confidence 44455666677777889998883 2221 1123556677789999998753
No 396
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=35.29 E-value=53 Score=23.26 Aligned_cols=42 Identities=2% Similarity=0.025 Sum_probs=21.1
Q ss_pred cccccccCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 13 ~~~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
|+++.++..-.+++++|..-.++.-..+.+.|.+.|+++.+.
T Consensus 20 ~~~~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~ 61 (272)
T 1yb1_A 20 GHMPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLW 61 (272)
T ss_dssp -----CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 455544443445566665443333456777777777776554
No 397
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=35.23 E-value=1.4e+02 Score=22.45 Aligned_cols=55 Identities=5% Similarity=0.012 Sum_probs=37.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-.+++++||.........+...|...|+.+.+.+....++.+.- .+.|-||..=|
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 217 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV-NKGDILVVATG 217 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHh-ccCCEEEECCC
Confidence 46789999977443456788888899999988864433454433 36788776443
No 398
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=34.60 E-value=1e+02 Score=21.14 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 23 NKNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 23 ~~~~I~vi-d~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
..++|+|+ ....+.+..+. +.|.+.|+++++++.++. .+++ ..+|.+|+.
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~-~~~l--~~~d~vi~g 74 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNL--PREGAVLIV 74 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGS-TTCC--CSSSEEEEE
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHh-hhhh--hhCCeEEEE
Confidence 44667666 33334455444 445557888888776532 2223 368888873
No 399
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=34.37 E-value=52 Score=20.51 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCch------HHHHHHHHhCCCe-EEEEeCCCCCHHHHhc--CCCCEEEECC
Q 033201 23 NKNPIIVIDNYDSFT------YNLCQYMGELGYH-FEVYRNDELTVEELKR--KNPRGVLISP 76 (125)
Q Consensus 23 ~~~~I~vid~~~~~~------~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~--~~~dgiIi~G 76 (125)
..+||+++ +..+.. ..+.+.+.+.|++ +++... +..++.. .++|.||.+.
T Consensus 17 ~~~kIlvv-C~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~---~~~~~~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 17 SMVKVLTA-CGNGMGSSMVIKMKVENALRQLGVSDIESASC---SVGEAKGLASNYDIVVASN 75 (110)
T ss_dssp -CEEEEEE-CCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEE---CHHHHHHHGGGCSEEEEET
T ss_pred CCcEEEEE-CCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEe---eHHHHhhccCCCcEEEECC
Confidence 34677655 444432 1355677888887 654432 2333321 3789777654
No 400
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=34.26 E-value=1.5e+02 Score=22.24 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=38.6
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
.-.+++++|+....-....+...|...|+.+.+......++++.- .+.|-||..=|
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~-~~ADIVI~Avg 213 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV-SRADLVVVAAG 213 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHh-ccCCEEEECCC
Confidence 346789999987544456788889999999988865333455443 36788776444
No 401
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=34.06 E-value=90 Score=19.80 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCeEEEE-ECCCCchHH------HHHHHHhCCCeEEEEe--C----CCCCHHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVI-DNYDSFTYN------LCQYMGELGYHFEVYR--N----DELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vi-d~~~~~~~~------i~~~l~~~g~~~~v~~--~----~~~~~~~~~~~~~dgiIi~GG 77 (125)
.|+|+.| .+..+..+. +.+..+++|+++.+-. . +..+.+++. +.|+||+.+-
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d 66 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVD 66 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEES
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecc
Confidence 3565555 555555443 3444566798876642 1 234556775 6899998654
No 402
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=34.06 E-value=73 Score=21.74 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-----------------HHHh--cCCCCEEEECCCCCCc
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-----------------EELK--RKNPRGVLISPGPGAP 81 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~-----------------~~~~--~~~~dgiIi~GG~~~~ 81 (125)
-.+|+|+|....+..-..+.+.|.+.|+++..+.-+.... +++. ..++|.||..-|....
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~~ 97 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPH 97 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCCTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCCCC
Confidence 4567888775433334568888888898887664321111 1111 1368999988886543
No 403
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=33.81 E-value=1e+02 Score=23.43 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=35.1
Q ss_pred CeEEEEECCCCc--hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEE
Q 033201 25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF 101 (125)
Q Consensus 25 ~~I~vid~~~~~--~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvL 101 (125)
-+|++++..+.. .+.+.|.|.++. .. .-+ .++.|||+ |.+.+........+.+++ +..++||+
T Consensus 246 g~ILfLEdv~E~p~~y~idRmL~qL~-------~a----G~f--~~~~Giil-G~~~~~~~~~~~~~vl~~~l~~~iPV~ 311 (346)
T 4eys_A 246 GKILLLETSEEKPKPEDFKKMLLTLK-------DT----GIF--AVINGLLV-GKPMDETFHDDYKEALLDIIDSNIPIV 311 (346)
T ss_dssp TCEEEEECCTTCCCHHHHHHHHHHHH-------TT----TGG--GTCSEEEE-ECCGGGTTHHHHHHHHHHHSCTTSCEE
T ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH-------Hc----CCc--ccCCEEEE-ecCCCCCcchhHHHHHHHHHcCCCcEE
Confidence 478888654433 256777776541 10 112 26789998 654332222234567776 43389976
No 404
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=33.76 E-value=11 Score=31.06 Aligned_cols=16 Identities=13% Similarity=-0.168 Sum_probs=10.8
Q ss_pred CCCCCeEEEEECCCCc
Q 033201 21 KNNKNPIIVIDNYDSF 36 (125)
Q Consensus 21 ~~~~~~I~vid~~~~~ 36 (125)
....+||+|+..++..
T Consensus 69 ~~~~~~igIltsGGda 84 (555)
T 2f48_A 69 FSKALNIGIILSGGPA 84 (555)
T ss_dssp CCSCCEEEEEEBSSCC
T ss_pred cCCCcEEEEECcCCCc
Confidence 3445789999776543
No 405
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=33.73 E-value=1.4e+02 Score=21.75 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=45.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--------------------------CCCCEEEECCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--------------------------KNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--------------------------~~~dgiIi~GG 77 (125)
.|||+||..+ ..-..+...|.+.|.++.++..+. .+.+.. ..+|-||++=-
T Consensus 2 ~mkI~IiGaG-aiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilavk 78 (312)
T 3hn2_A 2 SLRIAIVGAG-ALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLK 78 (312)
T ss_dssp --CEEEECCS-TTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCC
T ss_pred CCEEEEECcC-HHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEecC
Confidence 3677777542 334456666666777666553321 222211 13455444221
Q ss_pred CCCcCCchHHHHHHHH-hCCCCCEEEEchHH---HHHHHHhCC
Q 033201 78 PGAPQDSGISLQTVLE-LGPTVPLFGVCMGL---QCIGEAFGG 116 (125)
Q Consensus 78 ~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G~---QlLa~a~Gg 116 (125)
+ .......+.++. +..+.+|+-++-|+ +.+.+.++.
T Consensus 79 ~---~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~ 118 (312)
T 3hn2_A 79 T---FANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA 118 (312)
T ss_dssp G---GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG
T ss_pred C---CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC
Confidence 1 112223455555 35678899888886 467888874
No 406
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=33.60 E-value=1.1e+02 Score=24.17 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=25.9
Q ss_pred CCCCeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 22 NNKNPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 22 ~~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
-.++||+|+.. .++=.-.+.+.|.+.|+++.++++.
T Consensus 331 l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~ 375 (444)
T 3vtf_A 331 LRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPM 375 (444)
T ss_dssp CTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCC
Confidence 35678999932 2222335789999999999999875
No 407
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=33.55 E-value=55 Score=23.47 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=21.4
Q ss_pred cccccccccCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 033201 11 KSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 11 ~~~~~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~ 55 (125)
+|+++..-+....++.++|..-.++.-..+.+.|.+.|+.+.+..
T Consensus 16 ~n~~~~~mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 60 (280)
T 4da9_A 16 ENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITG 60 (280)
T ss_dssp -------CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cchhhhhhhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 344444433333344444444333334567788888888876654
No 408
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=33.40 E-value=61 Score=24.02 Aligned_cols=55 Identities=13% Similarity=-0.012 Sum_probs=30.6
Q ss_pred cCCCCCCeEEEEECCCCch-----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 19 KSKNNKNPIIVIDNYDSFT-----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~-----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
.+.+..|||+++-.. ... ..+.+.|++.|+++.++... ...+.+....+..+-+.
T Consensus 10 ~~~~~~MrIl~~~~~-~~gh~~~~~~La~~L~~~GheV~v~~~~-~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 10 VPRGSHMRILVIAGC-SEGFVMPLVPLSWALRAAGHEVLVAASE-NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp -----CCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEEEG-GGHHHHHHTTCCEEEEE
T ss_pred CCCCCceEEEEEcCC-CcchHHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHhCCCeeEecC
Confidence 445677899988543 221 24788999999999887542 11222333355555554
No 409
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=33.08 E-value=63 Score=19.79 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.|+|+|+.. +.....+.+.|.+.|.++.++..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEC
Confidence 367887754 22334567777777887777654
No 410
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=33.07 E-value=89 Score=23.55 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred CCCCeEEEEECCCCch--HHHHHHHHh-CCCeEEEEeCCCCCHHHHhcC-CCCE-EEECCCCCCcCCchHHHHHHHHh-C
Q 033201 22 NNKNPIIVIDNYDSFT--YNLCQYMGE-LGYHFEVYRNDELTVEELKRK-NPRG-VLISPGPGAPQDSGISLQTVLEL-G 95 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~--~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~-~~dg-iIi~GG~~~~~~~~~~~~~I~~~-~ 95 (125)
....||.++..+.++. .....++++ .|..+.++...+......... .-|. |+||-+ + +..+..+.++.+ +
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~se~~~~~~~~~~~~dlvI~iS~S-G---~T~e~l~a~~~ak~ 107 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVGVSQG-G---SSYSTYNAMKLAED 107 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGCCGGGGSSCCTTEEEEEEESS-S---CCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEEEcchhhhhcccCCCCCCcEEEEEeCC-C---CCHHHHHHHHHHHH
Confidence 5667999998876653 234456666 588887775432221111111 2233 333333 2 334455666665 5
Q ss_pred CCCCEEEEch
Q 033201 96 PTVPLFGVCM 105 (125)
Q Consensus 96 ~~~PvLGIC~ 105 (125)
.+.++++||-
T Consensus 108 ~ga~~iaIT~ 117 (352)
T 3g68_A 108 KGCKIASMAG 117 (352)
T ss_dssp TTCEEEEEES
T ss_pred CCCCEEEEeC
Confidence 6799999984
No 411
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=32.74 E-value=1.4e+02 Score=21.75 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=20.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v 53 (125)
+++||+||..++.......+.+.+.+.++.-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVA 32 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence 4678999987544455667777777766543
No 412
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=32.73 E-value=1.5e+02 Score=22.25 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=37.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-.+++++||.........+...|...|+.+.+.+....++.+.- .+.|-||..=|
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 211 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV-ENADLLIVAVG 211 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH-HHCSEEEECSC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-ccCCEEEECCC
Confidence 46789999977433456788888899999998865433454432 25777775433
No 413
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=32.33 E-value=1.1e+02 Score=21.37 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=22.3
Q ss_pred HHHHhCCCeEEEEeCCCC-C-HHHHh--cCCCCEEEECCCCC
Q 033201 42 QYMGELGYHFEVYRNDEL-T-VEELK--RKNPRGVLISPGPG 79 (125)
Q Consensus 42 ~~l~~~g~~~~v~~~~~~-~-~~~~~--~~~~dgiIi~GG~~ 79 (125)
+...+.|.+++.+..+.+ . .+.+- ..++|||||=+|..
T Consensus 64 ~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAy 105 (172)
T 3n8k_A 64 REAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGL 105 (172)
T ss_dssp HHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred HHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh
Confidence 334458999998875521 0 11111 12589999977644
No 414
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=32.12 E-value=1e+02 Score=22.42 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCCeEEEEE-CCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECC
Q 033201 23 NKNPIIVID-NYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISP 76 (125)
Q Consensus 23 ~~~~I~vid-~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~G 76 (125)
+.++|.||. .+ .....+...|.+.|+++.++..+.. +..+.. .+.|-||++=
T Consensus 20 ~~~~I~iIGg~G-~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~-~~aDvVilav 73 (298)
T 2pv7_A 20 DIHKIVIVGGYG-KLGGLFARYLRASGYPISILDREDWAVAESIL-ANADVVIVSV 73 (298)
T ss_dssp TCCCEEEETTTS-HHHHHHHHHHHTTTCCEEEECTTCGGGHHHHH-TTCSEEEECS
T ss_pred CCCEEEEEcCCC-HHHHHHHHHHHhCCCeEEEEECCcccCHHHHh-cCCCEEEEeC
Confidence 345899996 52 2345688899999999888765422 222222 3789988854
No 415
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=32.07 E-value=1e+02 Score=19.77 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCeEEEE-ECCCCchHH------HHHHHHhCCCeEEEEeC------CCCCHHHHhcCCCCEEEECCC
Q 033201 24 KNPIIVI-DNYDSFTYN------LCQYMGELGYHFEVYRN------DELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 24 ~~~I~vi-d~~~~~~~~------i~~~l~~~g~~~~v~~~------~~~~~~~~~~~~~dgiIi~GG 77 (125)
.|+|+.| .+..+-.+. +.+.-+++|+++.+-.- +..+.+++. +.|+|||.+-
T Consensus 5 ~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d 69 (111)
T 2kyr_A 5 SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIA--EATIIIHSVA 69 (111)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHH--HCSEEEEEES
T ss_pred cccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHH--hCCEEEEEeC
Confidence 3566555 555554332 44455668998876311 235666776 6899988665
No 416
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=31.79 E-value=23 Score=26.44 Aligned_cols=80 Identities=8% Similarity=0.042 Sum_probs=40.5
Q ss_pred CCCeEEEEECCCCchHHH----HHHHHhCCCeEEEE-eCCC-CCHHH-Hhc--CCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 23 NKNPIIVIDNYDSFTYNL----CQYMGELGYHFEVY-RNDE-LTVEE-LKR--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i----~~~l~~~g~~~~v~-~~~~-~~~~~-~~~--~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
..++++|+...+.|...+ .+.+++.|.++.-. .+.. .+... +.. .++|+|++.+.+ .+...+...+++
T Consensus 121 g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i~~~pDaV~~~~~~---~~~~~i~~~~~~ 197 (325)
T 2h4a_A 121 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASP---TELAEXKGYLTN 197 (325)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSTTCCCEEEECCCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhcCCCCCEEEEeCCH---HHHhhhhhhHhh
Confidence 346777775445555444 44555566554322 1221 11111 221 479999996642 111222333443
Q ss_pred hCCCCCEEEEch
Q 033201 94 LGPTVPLFGVCM 105 (125)
Q Consensus 94 ~~~~~PvLGIC~ 105 (125)
...+.|++|--.
T Consensus 198 ~g~~~pl~~~~~ 209 (325)
T 2h4a_A 198 IVPNLAIYASSR 209 (325)
T ss_dssp TCTTCEEEECGG
T ss_pred cCCCCCEEEecc
Confidence 456789998744
No 417
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=31.55 E-value=51 Score=24.77 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=39.3
Q ss_pred CeEEEEECCCC---chHHHHHHHHhCCCeEEEEe-CCCCCHHH---H---hcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYR-NDELTVEE---L---KRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (125)
Q Consensus 25 ~~I~vid~~~~---~~~~i~~~l~~~g~~~~v~~-~~~~~~~~---~---~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~ 94 (125)
+|++||-.... +...+.+.|++.|+++.++. ..+.+.+. + ...++|.||--|| +++.|..+...+
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA~---- 109 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAF---- 109 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHH----
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHHh----
Confidence 47877743222 23446677788888886654 21123322 2 2246899995555 344444433222
Q ss_pred CCCCCEEEE
Q 033201 95 GPTVPLFGV 103 (125)
Q Consensus 95 ~~~~PvLGI 103 (125)
.+++|+.-|
T Consensus 110 ~~~~p~i~I 118 (354)
T 3ce9_A 110 LRKLPFISV 118 (354)
T ss_dssp HHTCCEEEE
T ss_pred hcCCCEEEe
Confidence 235676655
No 418
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=31.48 E-value=1.7e+02 Score=22.79 Aligned_cols=87 Identities=10% Similarity=0.176 Sum_probs=48.0
Q ss_pred CCCCeEEEEECCC-------CchHHHHHHHHh-CCCeEEEEeCCCCCHH---HHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201 22 NNKNPIIVIDNYD-------SFTYNLCQYMGE-LGYHFEVYRNDELTVE---ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (125)
Q Consensus 22 ~~~~~I~vid~~~-------~~~~~i~~~l~~-~g~~~~v~~~~~~~~~---~~~~~~~dgiIi~GG~~~~~~~~~~~~~ 90 (125)
+.+-+|++-+.+. --.--+-+||++ .|-++++-......++ ++. .||.||=+||-+ ........-
T Consensus 316 ~~gd~v~~~e~c~h~~~~~dig~vk~p~~~~~~~~~~~~~~~~~g~~~p~~~~~~--~~~l~i~cg~cm--~~~~~~~~r 391 (423)
T 3qq5_A 316 EDGDTVVIMEGCTHRPLTEDIGRVKIPRWLVNHTGAQLNFKVIAGKDFPDLEEIE--NAKLIIHCGGCI--LNRSAMMRR 391 (423)
T ss_dssp CTTCEEEEECCSCCCCSSCCTTTTHHHHHHHHHSCSCCEEEEECSSSCCCHHHHS--SCSEEEECTTTC--CCHHHHHHH
T ss_pred CCCCEEEEeccCCCCCccccceechhhHHHHHHhCCCcEEEEecCCCCCCccCcc--cCcEEEECcchh--cCHHHHHHH
Confidence 5667888885321 112247889977 4444443322112222 453 899999999954 222333444
Q ss_pred HHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201 91 VLEL-GPTVPLFGVCMGLQCIGEAFG 115 (125)
Q Consensus 91 I~~~-~~~~PvLGIC~G~QlLa~a~G 115 (125)
|+.+ ++++|+- =||. .||...|
T Consensus 392 ~~~~~~~~~p~~--nyg~-~~a~~~g 414 (423)
T 3qq5_A 392 VRMAKRLGIPMT--NYGV-TISYLHG 414 (423)
T ss_dssp HHHHHHTTCCEE--EHHH-HHHHTTC
T ss_pred HHHHHHcCCCee--cHHH-HHHHHhC
Confidence 5544 6789985 3555 3444433
No 419
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=31.40 E-value=10 Score=30.76 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=8.8
Q ss_pred CCeEEEEECCCC
Q 033201 24 KNPIIVIDNYDS 35 (125)
Q Consensus 24 ~~~I~vid~~~~ 35 (125)
.+||+|+..++.
T Consensus 97 ~~rIgIltsGGd 108 (487)
T 2hig_A 97 ETTIGIVTCGGI 108 (487)
T ss_dssp GCEEEEEECSSC
T ss_pred CcEEEEEecCCC
Confidence 478999977653
No 420
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=31.31 E-value=59 Score=21.45 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRND 57 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~ 57 (125)
.+++|+|+.. +.....+.+.|.+. |+++.++..+
T Consensus 38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 38 GHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECC
Confidence 3568999964 23345688889888 9998887654
No 421
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=31.27 E-value=1.4e+02 Score=21.23 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-----CC----HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-----LT----VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-----~~----~~~~~~~~~dgiIi~GG 77 (125)
..++||+++-- ..-...+.+.|++.|++++.++... .. ...+....+|.|+++.+
T Consensus 139 ~~g~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 202 (269)
T 3re1_A 139 VPGSRVLIMRG-NEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSG 202 (269)
T ss_dssp SSSCEEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSH
T ss_pred CCCCEEEEEcc-CccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCH
Confidence 45678988743 2224468899999999987654321 11 11223347899998654
No 422
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=31.08 E-value=1.6e+02 Score=21.90 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=38.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-.+++++|+....-....+...|...|+.+.+.+....++++.- .+.|-||..=|
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~-~~ADIVI~Avg 212 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT-RQADLIIVAAG 212 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-TTCSEEEECSS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-hcCCEEEECCC
Confidence 46789999987544456788889999999988865433455443 36888876444
No 423
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=30.92 E-value=1.4e+02 Score=21.30 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=10.8
Q ss_pred hHHHHHHHHhCCCeEEEEe
Q 033201 37 TYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 37 ~~~i~~~l~~~g~~~~v~~ 55 (125)
-..+.+.|.+.|+++.+..
T Consensus 15 G~aia~~la~~Ga~V~~~~ 33 (247)
T 3ged_A 15 GKQICLDFLEAGDKVCFID 33 (247)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3445566666666665544
No 424
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=30.89 E-value=24 Score=24.94 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=25.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
-.+++|+|++........+.++|+..|+++...
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~ 41 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTY 41 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEEC
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 356799999876566677889999999887654
No 425
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=30.49 E-value=22 Score=24.49 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=18.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
|+|+|+.. +.....+.+.|.+.|+++.++..+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 45666653 223445666666667776666543
No 426
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=30.39 E-value=75 Score=20.32 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.++|+|+.. +.....+.+.|.+.|+++.++..+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 457787754 333456778888888888877653
No 427
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=30.38 E-value=1.9e+02 Score=22.49 Aligned_cols=57 Identities=12% Similarity=-0.039 Sum_probs=33.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHh--------------cCCCCEEEECCCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELK--------------RKNPRGVLISPGP 78 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~-~~~~--------------~~~~dgiIi~GG~ 78 (125)
-+.|++.+|--.+.-...+.++|.+.|+++...+...... ..+. ..++|.||+++|-
T Consensus 10 ~~~~~~h~i~I~G~G~sglA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~spgi 81 (469)
T 1j6u_A 10 HHHMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAV 81 (469)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTC
T ss_pred cccccEEEEEEcccCHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEECCCCHHHCCCCCEEEECCCc
Confidence 4668888885443323456888888999888775432111 1111 0147889998883
No 428
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=30.03 E-value=1.1e+02 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECC
Q 033201 39 NLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISP 76 (125)
Q Consensus 39 ~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~G 76 (125)
.+.++|++.|+++...+....+.+++. ..++|++|..+
T Consensus 31 ~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~ 70 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTP 70 (351)
T ss_dssp GCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECT
T ss_pred HHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEcc
Confidence 467889999999877654322212221 14788888754
No 429
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=30.01 E-value=1e+02 Score=25.43 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=43.1
Q ss_pred CCCeEEEEECCC---Cc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHh----cCCCCEEEECCCCCCcCCchHH---HHHH
Q 033201 23 NKNPIIVIDNYD---SF-TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDSGIS---LQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~---~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dgiIi~GG~~~~~~~~~~---~~~I 91 (125)
...+|++.--.+ .. ...+...|+..|+++...-.+ .+.+++. ..++|.|.+|+... + ..... .+.+
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~-vP~e~iv~aa~~~~~diVgLS~l~t-~-~~~~m~~~i~~L 173 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM-VPAEKILRTAKEVNADLIGLSGLIT-P-SLDEMVNVAKEM 173 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS-BCHHHHHHHHHHHTCSEEEEECCST-H-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEecCC-C-CHHHHHHHHHHH
Confidence 356777663211 22 234557789999999766554 4555542 24899999988532 1 11222 3444
Q ss_pred HHhCCCCCEE
Q 033201 92 LELGPTVPLF 101 (125)
Q Consensus 92 ~~~~~~~PvL 101 (125)
++...++||+
T Consensus 174 r~~g~~i~Vi 183 (579)
T 3bul_A 174 ERQGFTIPLL 183 (579)
T ss_dssp HHTTCCSCEE
T ss_pred HHcCCCCeEE
Confidence 4433467774
No 430
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=29.90 E-value=1.9e+02 Score=22.23 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=51.6
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHH---HhcCCCCEEEECCCCCCcCCc-------hHHH
Q 033201 24 KNPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQDS-------GISL 88 (125)
Q Consensus 24 ~~~I~vid~~~~~~~---~i~~~l~~~--g~~~~v~~~~~~~~~~---~~~~~~dgiIi~GG~~~~~~~-------~~~~ 88 (125)
+-.++.+|...++.. ...+++++. +..+..-.. .+.++ +.....|+|+++.|++...+. .+..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V--~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l 189 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNV--ATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPML 189 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEE--CSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCc--CCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHH
Confidence 345777774333332 355677764 555433112 23333 233589999997666543110 1134
Q ss_pred HHHHHh-CCCCCEE---EEchHHHHH-HHHhCCeeee
Q 033201 89 QTVLEL-GPTVPLF---GVCMGLQCI-GEAFGGESSK 120 (125)
Q Consensus 89 ~~I~~~-~~~~PvL---GIC~G~QlL-a~a~Gg~v~~ 120 (125)
..|.+. +...||+ ||..|-++. +.++|+...-
T Consensus 190 ~aI~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 190 TCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 566664 3223998 787666554 6677876543
No 431
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=29.75 E-value=1.5e+02 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 23 ~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.+++|+|+.. .++=...+.+.|.+.|+++.++++.
T Consensus 328 ~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~ 371 (467)
T 2q3e_A 328 TDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPK 371 (467)
T ss_dssp TTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCc
Confidence 4678999942 1222335889999999999999875
No 432
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=29.71 E-value=1.5e+02 Score=21.15 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=42.3
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEE---EeCCCCCH----HHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v---~~~~~~~~----~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..+||++|...+.+. ..+.+.+++.|.++.. ++...... ..+...++|+|++.+.. .+.....+.+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~---~~a~~~~~~~ 214 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAY---EDAAPFLRAL 214 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCc---hHHHHHHHHH
Confidence 446898885333332 2366778888987643 22221221 22333478999885431 1111234445
Q ss_pred HHhCCCCCEEEE
Q 033201 92 LELGPTVPLFGV 103 (125)
Q Consensus 92 ~~~~~~~PvLGI 103 (125)
++..-++|++|.
T Consensus 215 ~~~g~~~p~~~~ 226 (358)
T 3hut_A 215 RARGSALPVYGS 226 (358)
T ss_dssp HHTTCCCCEEEC
T ss_pred HHcCCCCcEEec
Confidence 555557899886
No 433
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=29.69 E-value=1.6e+02 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 23 ~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.+++|+|+.. .++=.-.+.+.|.+.|+++.++++.
T Consensus 317 ~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~ 360 (450)
T 3gg2_A 317 QGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPV 360 (450)
T ss_dssp TTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCC
Confidence 4679999942 1222335888999999999999875
No 434
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=29.67 E-value=1.7e+02 Score=21.70 Aligned_cols=55 Identities=11% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-.+++++|+....-....+...|...|+.+.+......++++.- .+.|-||..=|
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~-~~ADIVI~Avg 202 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMT-RSSKIVVVAVG 202 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HHSSEEEECSS
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhh-ccCCEEEECCC
Confidence 46789999977443456788889999999988865434455443 25787775433
No 435
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=29.36 E-value=1.2e+02 Score=19.66 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCeEEEEECC---CCchHHHHHHHHhCCCeEEEEeCCC---------CCHHHHhcCCCCEEEEC
Q 033201 24 KNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRNDE---------LTVEELKRKNPRGVLIS 75 (125)
Q Consensus 24 ~~~I~vid~~---~~~~~~i~~~l~~~g~~~~v~~~~~---------~~~~~~~~~~~dgiIi~ 75 (125)
..+|+||... +.+...+.++|.+.|+++..+.+.. .++.++. ..+|.++|.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~-~~vDlvvi~ 84 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIP-DKIEVVDLF 84 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCS-SCCSEEEEC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcC-CCCCEEEEE
Confidence 5689999543 3445668888999999754443321 1233333 257777764
No 436
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=29.20 E-value=77 Score=23.27 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCeEEEEECC------CC---chHHHHHHHHhCCCeEEEEeC
Q 033201 24 KNPIIVIDNY------DS---FTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 24 ~~~I~vid~~------~~---~~~~i~~~l~~~g~~~~v~~~ 56 (125)
+|||+++... ++ +...+.+.|.+.|++++++.+
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~ 43 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 43 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5899998532 12 234577889999999998864
No 437
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=29.04 E-value=89 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=23.3
Q ss_pred CCCCeEEEEECC-----CC---chHHHHHHHHhCCCeEEEEeCC
Q 033201 22 NNKNPIIVIDNY-----DS---FTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 22 ~~~~~I~vid~~-----~~---~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
..+|||+++... ++ +...+.+.|.+.|+++.++...
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 61 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPA 61 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 456789999532 11 2345778889999999888653
No 438
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=28.93 E-value=68 Score=21.20 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEEEE-CCCCchHHHHHHHHh-CCC-eEEEEeCCCC-CHHHHhcCCCCEEEECCCCC-CcCC-----chHHHHHH-HHh-
Q 033201 27 IIVID-NYDSFTYNLCQYMGE-LGY-HFEVYRNDEL-TVEELKRKNPRGVLISPGPG-APQD-----SGISLQTV-LEL- 94 (125)
Q Consensus 27 I~vid-~~~~~~~~i~~~l~~-~g~-~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~-~~~~-----~~~~~~~I-~~~- 94 (125)
|+|+= ...+.+..+.+.+.+ .+. .+++++.++. ...++. ++|.||+ |.|- .-.+ ...+.+++ .++
T Consensus 2 i~I~Y~S~tGnT~~vA~~ia~~l~~~~~~~~~~~~~~~~~~l~--~~d~ii~-g~pt~~~G~~~~~~p~~~~~fl~~~l~ 78 (173)
T 2fcr_A 2 IGIFFSTSTGNTTEVADFIGKTLGAKADAPIDVDDVTDPQALK--DYDLLFL-GAPTWNTGADTERSGTSWDEFLYDKLP 78 (173)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHGGGBCCCEEGGGCSCGGGGG--GCSEEEE-EEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred EEEEEECCCchHHHHHHHHHHHhccCCcEEEehhhcCChhHHc--cCCEEEE-EEeecCCCCcCccCcHHHHHHHHhhcc
Confidence 44552 223455666666543 221 3444554322 234443 6899888 3332 2112 23456677 533
Q ss_pred ---CCCCCEEEEch
Q 033201 95 ---GPTVPLFGVCM 105 (125)
Q Consensus 95 ---~~~~PvLGIC~ 105 (125)
-.++++.-.|.
T Consensus 79 ~~~l~gk~~avfg~ 92 (173)
T 2fcr_A 79 EVDMKDLPVAIFGL 92 (173)
T ss_dssp GCCCTTCEEEEEEE
T ss_pred ccccCCCEEEEEEE
Confidence 13455554444
No 439
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=28.78 E-value=1.6e+02 Score=21.15 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=38.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHh-C-CCeEEEE------eCCCCCHHH-----------HhcCCCCEEEECCCCCCcCCc
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVY------RNDELTVEE-----------LKRKNPRGVLISPGPGAPQDS 84 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~-~-g~~~~v~------~~~~~~~~~-----------~~~~~~dgiIi~GG~~~~~~~ 84 (125)
.++|.|+|.+-+-. .+.+.+.+ . ..++..+ |+-..+.++ +...++|+|++.=...+
T Consensus 12 ~~~IGv~DsG~Ggl-tv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas---- 86 (273)
T 2oho_A 12 TRPIGFLDSGVGGL-TVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTAT---- 86 (273)
T ss_dssp CCCEEEEESSSTTH-HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHH----
T ss_pred CCcEEEEeCCCcHH-HHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchHh----
Confidence 35799998754433 35555544 2 2333221 211122222 12347899998432111
Q ss_pred hHHHHHHHHhCCCCCEEEEchH
Q 033201 85 GISLQTVLELGPTVPLFGVCMG 106 (125)
Q Consensus 85 ~~~~~~I~~~~~~~PvLGIC~G 106 (125)
....+.+++. -++||+||.--
T Consensus 87 ~~~l~~lr~~-~~iPvigi~ep 107 (273)
T 2oho_A 87 AVAWEEVKAA-LDIPVLGVVLP 107 (273)
T ss_dssp HHHHHHHHHH-CSSCEEESHHH
T ss_pred HHHHHHHHHh-CCCCEEeccHH
Confidence 0124566663 25999997643
No 440
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=28.66 E-value=54 Score=24.47 Aligned_cols=87 Identities=9% Similarity=0.086 Sum_probs=46.5
Q ss_pred CCCeEEEEECCCCch--HHHHHHHHhC--CCeEEEEeCCCCCHHHHhcCC-CCEEE-ECCCCCCcCCchHHHHHHHHh-C
Q 033201 23 NKNPIIVIDNYDSFT--YNLCQYMGEL--GYHFEVYRNDELTVEELKRKN-PRGVL-ISPGPGAPQDSGISLQTVLEL-G 95 (125)
Q Consensus 23 ~~~~I~vid~~~~~~--~~i~~~l~~~--g~~~~v~~~~~~~~~~~~~~~-~dgiI-i~GG~~~~~~~~~~~~~I~~~-~ 95 (125)
...+|.++..+.++. ..+..+|++. |..+......+.........+ -|.+| ||-+ + +..+..+.++.+ +
T Consensus 24 ~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~S-G---~T~e~l~a~~~ak~ 99 (329)
T 3eua_A 24 TIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHS-G---NTPETVKAAAFARG 99 (329)
T ss_dssp CCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESS-S---CCHHHHHHHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCC-C---CCHHHHHHHHHHHH
Confidence 567999998877652 3456677654 888877653211000000112 23333 3322 1 334455666654 5
Q ss_pred CCCCEEEEch-HHHHHHHH
Q 033201 96 PTVPLFGVCM-GLQCIGEA 113 (125)
Q Consensus 96 ~~~PvLGIC~-G~QlLa~a 113 (125)
++.++++||- .---|++.
T Consensus 100 ~Ga~~iaIT~~~~S~La~~ 118 (329)
T 3eua_A 100 KGALTIAMTFKPESPLAQE 118 (329)
T ss_dssp TTCEEEEEESCTTSHHHHH
T ss_pred CCCCEEEEECCCCChHHHh
Confidence 6799999983 33334443
No 441
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=28.65 E-value=48 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=20.5
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC 104 (125)
.+|.+|+.. |..+ ...|++. .-++|+.|||
T Consensus 157 ~Pdll~v~D----p~~e---~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 157 LPDIVIIVD----QQEE---YTALRECITLGIPTICLI 187 (231)
T ss_dssp CCSEEEESC----TTTT---HHHHHHHHTTTCCEEECC
T ss_pred CCCEEEEeC----Cccc---cHHHHHHHHhCCCEEEEe
Confidence 488888853 3222 3566764 6789999998
No 442
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.25 E-value=1.1e+02 Score=23.58 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCcCCc---hHHHHHHHH-h-CCCCCEE
Q 033201 68 NPRGVLISPGPGAPQDS---GISLQTVLE-L-GPTVPLF 101 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~---~~~~~~I~~-~-~~~~PvL 101 (125)
++.|||+ |.+....+. ....++|++ + ..++||+
T Consensus 294 ~~~GIil-G~f~~~~~~~~~~~~~~vl~~~~~~~~iPVv 331 (371)
T 3tla_A 294 KVSAIIL-GKHELFDCAGSKRRPYEVLTEVLDGKQIPVL 331 (371)
T ss_dssp TCSEEEE-ECCBTCBCTTSCCCHHHHHHHHHTTCCCCEE
T ss_pred cCCEEEE-cCCccccCCCccccHHHHHHHHHhhCCCcEE
Confidence 6889998 554322222 125677776 4 5689976
No 443
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=28.19 E-value=46 Score=25.20 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=39.3
Q ss_pred CCeEEEEECCC---CchHHHHHHHHhCCCeEEEEeCC-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201 24 KNPIIVIDNYD---SFTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (125)
Q Consensus 24 ~~~I~vid~~~---~~~~~i~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~ 92 (125)
++|++||-... .+...+.+.|++.|+++....++ +.+.+.+ ...++|.||--|| +++.|..+.....
T Consensus 31 g~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~- 108 (370)
T 1jq5_A 31 GNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVADE- 108 (370)
T ss_dssp CSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHHHH-
T ss_pred CCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHHHh-
Confidence 37888884321 23345667788888887422222 2222222 2357899995555 3444444332222
Q ss_pred HhCCCCCEEEE
Q 033201 93 ELGPTVPLFGV 103 (125)
Q Consensus 93 ~~~~~~PvLGI 103 (125)
+++|+.-|
T Consensus 109 ---~~~p~i~I 116 (370)
T 1jq5_A 109 ---LDAYIVIV 116 (370)
T ss_dssp ---HTCEEEEE
T ss_pred ---cCCCEEEe
Confidence 24666654
No 444
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=27.91 E-value=44 Score=26.69 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHhCCCCCEEEEchHHHH---HHHHhC
Q 033201 88 LQTVLELGPTVPLFGVCMGLQC---IGEAFG 115 (125)
Q Consensus 88 ~~~I~~~~~~~PvLGIC~G~Ql---La~a~G 115 (125)
...++++ .+++++|+|.+.|. ++..+|
T Consensus 166 t~a~~~~-~~~k~vGlC~~~~~~~~~~~~Lg 195 (477)
T 3u95_A 166 TQAVRRW-TGANIIGFCHGVAGVYEVFERLG 195 (477)
T ss_dssp HHHHHHH-HCCCEEEECCGGGHHHHHHHHTT
T ss_pred HHHHHHh-CCCCeEEECCCHHHHHHHHHHhC
Confidence 3445554 24789999996554 444454
No 445
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.89 E-value=1.8e+02 Score=21.19 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=29.2
Q ss_pred CCCCeEEEEECC-------CCchHHHHHHHHh--CCCeEEEEeCCCCC---H----HHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNY-------DSFTYNLCQYMGE--LGYHFEVYRNDELT---V----EELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~-------~~~~~~i~~~l~~--~g~~~~v~~~~~~~---~----~~~~~~~~dgiIi~GG 77 (125)
+....|.++-.. +.|...+.+.+++ .|+.+.++..+... . +.+....+||||+.+.
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 445678777432 1222234444433 28888887654211 1 1223458999999765
No 446
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=27.69 E-value=75 Score=21.72 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCeEEEEE--CC-CCchHHHHHHHHhCCCeEEE--EeC-CCCCHH----HH-hcCCCCEEEECCCCCCcCCchH----HH
Q 033201 24 KNPIIVID--NY-DSFTYNLCQYMGELGYHFEV--YRN-DELTVE----EL-KRKNPRGVLISPGPGAPQDSGI----SL 88 (125)
Q Consensus 24 ~~~I~vid--~~-~~~~~~i~~~l~~~g~~~~v--~~~-~~~~~~----~~-~~~~~dgiIi~GG~~~~~~~~~----~~ 88 (125)
..||+|+. +. +.....-.+.|+++|.+.++ ++. -...++ .+ ...+||+||..|-.+.....+. ..
T Consensus 2 ~~ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~~vs 81 (156)
T 2b99_A 2 TKKVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAHEAS 81 (156)
T ss_dssp CCEEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHHHHH
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHHHHHH
Confidence 46788884 22 23344566778888754332 332 111111 11 1247999998887632211111 12
Q ss_pred HHHHH--hCCCCCEE
Q 033201 89 QTVLE--LGPTVPLF 101 (125)
Q Consensus 89 ~~I~~--~~~~~PvL 101 (125)
+-|.+ ++.++||.
T Consensus 82 ~Gl~~v~L~~~vPV~ 96 (156)
T 2b99_A 82 LGLMLAQLMTNKHII 96 (156)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHhhhCCCEE
Confidence 33333 46679975
No 447
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.41 E-value=1.5e+02 Score=22.42 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=35.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc---hHHHHHHHH-h-CCCCC
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-L-GPTVP 99 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~---~~~~~~I~~-~-~~~~P 99 (125)
-+|++++.-+...+.+.|.|.++.. . .-+ .++.|||+ |.+....+. ....+++++ + ..++|
T Consensus 232 g~ILfLEdv~e~py~idRmL~qL~~-------a----G~~--~~~~Giil-G~f~~~~~~~~~~~~~~vl~~~~~~~~iP 297 (336)
T 3sr3_A 232 GDILFIEDSSKDAATIERSFSFLKI-------N----GVF--DKVSGIIL-GKHEQFDDCGTNRKPYEILLEVLQNQRIP 297 (336)
T ss_dssp TCEEEEECCSCBHHHHHHHHHHHHH-------T----TGG--GTCSEEEE-ECCTTCBCTTSCCCHHHHHHHHHTTCCCC
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHH-------c----CCc--ccCCEEEE-ccCcccccCCccccHHHHHHHHhhcCCCe
Confidence 4677775444445556665554310 0 011 26789998 664322221 124567776 4 56899
Q ss_pred EE-EEchHH
Q 033201 100 LF-GVCMGL 107 (125)
Q Consensus 100 vL-GIC~G~ 107 (125)
|+ ++=+||
T Consensus 298 V~~~~~~GH 306 (336)
T 3sr3_A 298 LLADFDCCH 306 (336)
T ss_dssp EEEEESSSS
T ss_pred EEECCCCCC
Confidence 76 333333
No 448
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=27.36 E-value=1.5e+02 Score=20.12 Aligned_cols=54 Identities=13% Similarity=-0.074 Sum_probs=29.5
Q ss_pred CeEEEEEC----CCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHH-h-cCCCCEEEECCCCC
Q 033201 25 NPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDE-LTVEEL-K-RKNPRGVLISPGPG 79 (125)
Q Consensus 25 ~~I~vid~----~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~-~-~~~~dgiIi~GG~~ 79 (125)
|||++|.. ..|+...+.....+...++++++..+ ....+. . -...|+||+ +.|.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~-~~P~ 61 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIIL-EFPL 61 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEE-EEEC
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEE-ECCh
Confidence 57887742 23555544444433346788887653 122221 1 137999998 5554
No 449
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=27.29 E-value=12 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=26.5
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------chHHHHHHH
Q 033201 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (125)
Q Consensus 66 ~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI-------------C~G~QlLa~ 112 (125)
..+.|++|+-||.++......+.+..++...++|+.|| |+|+...+.
T Consensus 102 ~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 102 AHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp HTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 34778888778744322222222222222345888888 888876544
No 450
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.00 E-value=45 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=33.0
Q ss_pred EEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH--------HHHHHHHhCCe
Q 033201 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGGE 117 (125)
Q Consensus 71 giIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G--------~QlLa~a~Gg~ 117 (125)
-|++++|+.+. +...+.++++++ +.++.|-=|++| +|.++.+..|+
T Consensus 110 IIlf~ds~~~~-~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~ 164 (268)
T 4b4t_W 110 IVAFVCSPISD-SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNP 164 (268)
T ss_dssp EEEEECSCCSS-CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSS
T ss_pred EEEEECCCCCC-CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCC
Confidence 47777887653 344566777775 677888888888 68888888663
No 451
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=26.89 E-value=1.1e+02 Score=21.90 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=31.7
Q ss_pred CCCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEEC
Q 033201 23 NKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLIS 75 (125)
Q Consensus 23 ~~~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~ 75 (125)
..|||+|+--+.+- ...+.+.|++.|+++..+..+... ..+.. .++|.++..
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~-~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKM-DLIEKAKDIDFALLA 62 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGG-GHHHHTTTCSEEEEC
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCch-hHHHhccCCCEEEEe
Confidence 35789988533221 124667788899999888765211 11221 378988764
No 452
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=26.84 E-value=61 Score=24.97 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFG 102 (125)
Q Consensus 67 ~~~dgiIi~G-G~~~~~~~~~~~~~I~~~-~~~~PvLG 102 (125)
..++||||-| |.++......+.+.|+++ ++++||.=
T Consensus 252 ~g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~ 289 (358)
T 2him_A 252 QPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVN 289 (358)
T ss_dssp SSCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3689998844 444443334567778775 77888863
No 453
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=26.65 E-value=1.5e+02 Score=20.14 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~ 75 (125)
..++|.||.. +..-..+...|.+.|.++.++..+.. ...+.|.||++
T Consensus 18 ~~~~I~iiG~-G~mG~~la~~l~~~g~~V~~~~~~~~-----~~~~aD~vi~a 64 (209)
T 2raf_A 18 QGMEITIFGK-GNMGQAIGHNFEIAGHEVTYYGSKDQ-----ATTLGEIVIMA 64 (209)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEECTTCC-----CSSCCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH-----HhccCCEEEEc
Confidence 4568999975 23345688888889998877754321 11357777774
No 454
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=26.53 E-value=1.8e+02 Score=20.79 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=30.5
Q ss_pred CCCCCeEEEEEC---CCCchH----HHHHHHHhCCCeEEEE--eCCC-CCH-------HHHhcCCCCEEEEC
Q 033201 21 KNNKNPIIVIDN---YDSFTY----NLCQYMGELGYHFEVY--RNDE-LTV-------EELKRKNPRGVLIS 75 (125)
Q Consensus 21 ~~~~~~I~vid~---~~~~~~----~i~~~l~~~g~~~~v~--~~~~-~~~-------~~~~~~~~dgiIi~ 75 (125)
.+...+|.++-. .+.|.. .+.+.+++.|+++.+. ..+. .+. +.+...++||||++
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344456777732 334433 3556677789988765 2320 111 12223579999994
No 455
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=26.46 E-value=1.9e+02 Score=21.43 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEe-C--CCCC----HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYR-N--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~----~i~~~l~~~g~~~~v~~-~--~~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..++|+++...+.|.. .+.+.+++.|.++.... + ...+ +.++...++|.|++.+.. ......++
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~-----~~~~~~~~ 237 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFY-----PQDQALFM 237 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCC-----HHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc-----CchHHHHH
Confidence 3478988865444433 35566677888875432 2 1122 233444589999986531 11233445
Q ss_pred HHh---CCCCCEEEE
Q 033201 92 LEL---GPTVPLFGV 103 (125)
Q Consensus 92 ~~~---~~~~PvLGI 103 (125)
+++ .-+.|+++.
T Consensus 238 ~~~~~~g~~~~~~~~ 252 (419)
T 3h5l_A 238 NQFMTDPTNSLVYLQ 252 (419)
T ss_dssp HHHTTSCCSCEEEEC
T ss_pred HHHHHcCCCceEEec
Confidence 543 234566654
No 456
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=26.44 E-value=1.6e+02 Score=20.16 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred CeEEEEECCC-------CchHHHH----HHHHhCCCeEEEEeCCC-CCHHHHh--cCCCCEEEECCCCC
Q 033201 25 NPIIVIDNYD-------SFTYNLC----QYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPG 79 (125)
Q Consensus 25 ~~I~vid~~~-------~~~~~i~----~~l~~~g~~~~v~~~~~-~~~~~~~--~~~~dgiIi~GG~~ 79 (125)
-+|++|.-.. ++...+. +.+++.|.++++++..+ ....++. -...|+||+ +.|.
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~-~~P~ 80 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW-QMPG 80 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE-EEEC
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE-ECCc
Confidence 5788885322 3433344 44455699999988653 1222221 136899998 5443
No 457
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=26.28 E-value=1.6e+02 Score=20.10 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHhCCCeEEEEeCCCC-C-HHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201 43 YMGELGYHFEVYRNDEL-T-VEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (125)
Q Consensus 43 ~l~~~g~~~~v~~~~~~-~-~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL 101 (125)
...+.|.+++.+..+.+ . .+.+. ..++|||||=+|..+-+.. .+.+.|..+. +|+.
T Consensus 44 ~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv-AlrDAl~~~~--~P~V 103 (153)
T 3lwz_A 44 QAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSV-ALRDALLGVQ--IPFI 103 (153)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH-HHHHHHHHHT--CCEE
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechH-HHHHHHHhcC--CCEE
Confidence 33457899988875421 0 11121 2469999997774433222 2445555443 5554
No 458
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=26.27 E-value=2e+02 Score=21.40 Aligned_cols=55 Identities=5% Similarity=0.038 Sum_probs=38.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
-.+++++||....-....+...|...|+.+.+......++++.. .+.|-||..=|
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 213 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT-TKADILIVAVG 213 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc-ccCCEEEECCC
Confidence 46789999976444456788889999999988764333455443 37888886544
No 459
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=26.26 E-value=85 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=23.3
Q ss_pred CCCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEe
Q 033201 20 SKNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYR 55 (125)
Q Consensus 20 ~~~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~ 55 (125)
....+|+|+|.... ++ -..+.+.|.+.|+++..+.
T Consensus 16 ~~~~~~~vlVTGas-G~iG~~l~~~L~~~g~~V~~~~ 51 (330)
T 2pzm_A 16 PRGSHMRILITGGA-GCLGSNLIEHWLPQGHEILVID 51 (330)
T ss_dssp STTTCCEEEEETTT-SHHHHHHHHHHGGGTCEEEEEE
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEE
Confidence 33456777777543 44 4568888888898887653
No 460
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=26.25 E-value=93 Score=22.79 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCchH-----HHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTY-----NLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~-----~i~~~l~~~g~~~~v~~~ 56 (125)
..|||+++-+. +..+ .+.+.|+++|.++.++..
T Consensus 21 ~~MRIL~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 21 QSMRALFITSP-GLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp CCCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEECCC-chhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899998653 3322 378999999999998864
No 461
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=26.21 E-value=1.2e+02 Score=20.87 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHHHHHHHHhCCeee
Q 033201 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESS 119 (125)
Q Consensus 67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (125)
.++|+|++.-... ...+.+++.- ++|++||.--.-..+...|+++.
T Consensus 74 ~g~d~iviaCnta------~~~~~l~~~~-~iPvi~i~~~~~~~a~~~~~rig 119 (228)
T 2eq5_A 74 EGVDAIIISCAAD------PAVEKVRKLL-SIPVIGAGSSVSALALAYGRRVG 119 (228)
T ss_dssp TTCSEEEECSTTC------TTHHHHHHHC-SSCEEEHHHHHHHHHHTTCSSEE
T ss_pred CCCCEEEEeCCch------HHHHHHHHhC-CCCEeCccHHHHHHHHHhCCeEE
Confidence 4799999965322 2345666532 59999987533333445676665
No 462
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=26.08 E-value=27 Score=26.60 Aligned_cols=51 Identities=6% Similarity=-0.038 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhc-CCCCEEEE
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~-~~~dgiIi 74 (125)
.++|+|+|........+.+.|++ .++.+.....-....+.+.. ..+|.||+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~Dlvll 55 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAIC 55 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEE
Confidence 36899998654444567778877 45555433211011122222 36888776
No 463
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=26.01 E-value=1.1e+02 Score=22.13 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.+|+|+++.. +.....+.+.|.+.|+++.+...
T Consensus 6 ~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~~ 38 (300)
T 2rir_A 6 TGLKIAVIGG-DARQLEIIRKLTEQQADIYLVGF 38 (300)
T ss_dssp CSCEEEEESB-CHHHHHHHHHHHHTTCEEEEESC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEec
Confidence 4578888854 23344567888889999877643
No 464
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=25.93 E-value=66 Score=19.77 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
+++|+|+.. +.....+.+.|.+.|+++.++..
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~ 37 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDI 37 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEES
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 356888875 34455677888888887776643
No 465
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=25.80 E-value=67 Score=24.74 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred CCeEEEEECCCCch-----HHHHHHHHhCCCeEEEEeCCC--CCHHHH-------hcCCCCEEEECCCCCCcCCch
Q 033201 24 KNPIIVIDNYDSFT-----YNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (125)
Q Consensus 24 ~~~I~vid~~~~~~-----~~i~~~l~~~g~~~~v~~~~~--~~~~~~-------~~~~~dgiIi~GG~~~~~~~~ 85 (125)
++|++||-...... ..+.+.|+ |+++.+++--+ .+.+.+ ...++|.||--|| +++.|..
T Consensus 50 g~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~A 122 (408)
T 1oj7_A 50 DARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGT 122 (408)
T ss_dssp TCEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHH
T ss_pred CCEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHH
Confidence 36888884322222 23444444 78877665221 123222 2347899995555 3444433
No 466
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=25.63 E-value=59 Score=23.37 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 033201 38 YNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 38 ~~i~~~l~~~g~~~~v~~~~ 57 (125)
..+.+.|.+.|+++.++...
T Consensus 37 ~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 37 ANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp HHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 45778888899999988643
No 467
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=25.59 E-value=2.1e+02 Score=21.43 Aligned_cols=55 Identities=7% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHH--HHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~--~~~~~~~dgiIi~GG 77 (125)
-.+++++||....-....+...|...|+.+.+.+....+++ +.. .+.|-||..=|
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~-~~ADIVI~Avg 219 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYL-RTADIVIAAMG 219 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHH-HTCSEEEECSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhh-ccCCEEEECCC
Confidence 46789999976443456788889999999988864323344 332 36888776444
No 468
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=25.02 E-value=88 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCc--hHHHHHHHHhCCCeEEEE
Q 033201 23 NKNPIIVIDNYDSF--TYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 23 ~~~~I~vid~~~~~--~~~i~~~l~~~g~~~~v~ 54 (125)
.+|||+|=.-..+| ...+.++|++.|+++.=+
T Consensus 20 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 20 GSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 44787765322344 467889999999988655
No 469
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.74 E-value=1.9e+02 Score=20.51 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
.+++|+||..+ .....-.+.|.+.|++++++.++
T Consensus 30 ~gk~VLVVGgG-~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGG-TIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCS-HHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCC
Confidence 35688888653 22345667888889999998764
No 470
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=24.67 E-value=1.7e+02 Score=20.87 Aligned_cols=78 Identities=8% Similarity=0.109 Sum_probs=41.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEE---EeCCCCC----HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v---~~~~~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..+||++|...+.+. ..+.+.+++.|.++.. ++..... ...+...++|+|++.+.. .+...+.+.+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~ 213 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLH---TEAGLIIRQA 213 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCc---hHHHHHHHHH
Confidence 346888885433332 2366777888876532 2222122 223334579999975531 1111234444
Q ss_pred HHhCCCCCEEEE
Q 033201 92 LELGPTVPLFGV 103 (125)
Q Consensus 92 ~~~~~~~PvLGI 103 (125)
++..-+.|++|.
T Consensus 214 ~~~g~~~~~~~~ 225 (356)
T 3ipc_A 214 ADQGLKAKLVSG 225 (356)
T ss_dssp HHHTCCCEEEEC
T ss_pred HHCCCCCcEEEe
Confidence 555556888875
No 471
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=24.60 E-value=1.5e+02 Score=19.30 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=28.2
Q ss_pred HhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEchHHHHHHHH
Q 033201 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 64 ~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~PvLGIC~G~QlLa~a 113 (125)
+...++|.||-+..+.. ....+ -..||+ ++.++|++=-=-++..+.++
T Consensus 92 i~~g~i~lVInt~~~~~-~~~~d-~~~iRR~Av~~~IP~~T~~~tA~a~~~a 141 (143)
T 2yvq_A 92 IRDGSIDLVINLPNNNT-KFVHD-NYVIRRTAVDSGIPLLTNFQVTKLFAEA 141 (143)
T ss_dssp HHTTSCCEEEECCCCCG-GGHHH-HHHHHHHHHHTTCCEECSHHHHHHHHHT
T ss_pred HHCCCceEEEECCCCCC-cCCcc-HHHHHHHHHHhCCCeEcCHHHHHHHHHH
Confidence 44457999999887531 11112 234554 37889988655555555544
No 472
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=24.58 E-value=2.2e+02 Score=21.17 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEE-eCCC----------------CCHHHHhc-CCCCEEEECCC
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY-RNDE----------------LTVEELKR-KNPRGVLISPG 77 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~-~~~~----------------~~~~~~~~-~~~dgiIi~GG 77 (125)
.++||+||..+..-...+...+...++++.-+ +.+. .+.+++.. .++|+|+|+--
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 34689999875432344566666677776543 2220 13444432 36899998553
No 473
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=24.56 E-value=86 Score=28.28 Aligned_cols=38 Identities=5% Similarity=0.178 Sum_probs=25.4
Q ss_pred ccCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 18 KKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 18 ~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.++.++.+||+|++. +.....+.+.++++|+++..+..
T Consensus 25 ~~~~~m~kkILI~gr-Geia~~iiraar~lGi~vVaV~s 62 (1236)
T 3va7_A 25 AQKKKPFETVLIANR-GEIAVRIMKTLKRMGIKSVAVYS 62 (1236)
T ss_dssp ---CCSCSEEEECCC-HHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCccCCCCEEEEEcC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 344455668888864 23355788999999999877754
No 474
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=24.55 E-value=51 Score=22.69 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH
Q 033201 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (125)
Q Consensus 68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G 106 (125)
-+|.|+|=||.+-. ....+.+.++.-++|+.|+--|
T Consensus 79 ~PDLilIDGGkgQl---~aA~~vl~elg~~i~v~glAK~ 114 (159)
T 2nrr_A 79 LPNLLFVDGGIGQV---NAAIEALKEIGKDCPVVGLAKK 114 (159)
T ss_dssp CCSEEEESSCHHHH---HHHHHHHHHTTCCCCEEEEC--
T ss_pred CCCEEEEeCCHHHH---HHHHHHHHHcCCCccEEEEEcC
Confidence 47999999985421 1234566666667999999876
No 475
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.27 E-value=1.2e+02 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCeEEEEEC---CCCchHH----HHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDN---YDSFTYN----LCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~---~~~~~~~----i~~~l~~~g~~~~v~~~~ 57 (125)
+|||++|.- ..++... +.+.+++.|.++++++..
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 478998843 2345444 444556679999998764
No 476
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=24.05 E-value=80 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
.|.+||.+|..+ .--..+.+.|.+.|+++.+++.
T Consensus 3 ~Ms~kIgfIGLG-~MG~~mA~~L~~~G~~V~v~dr 36 (297)
T 4gbj_A 3 AMSEKIAFLGLG-NLGTPIAEILLEAGYELVVWNR 36 (297)
T ss_dssp -CCCEEEEECCS-TTHHHHHHHHHHTTCEEEEC--
T ss_pred CCCCcEEEEecH-HHHHHHHHHHHHCCCeEEEEeC
Confidence 455689999873 2345688888899999988753
No 477
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=23.90 E-value=1.5e+02 Score=22.01 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=47.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeC--C---CCCHHHHh-----cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRN--D---ELTVEELK-----RKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~--~---~~~~~~~~-----~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
-+|.+|...+.....+..++.+.|.-+- ++.. + ..+..|+. +.+-+.|++-+=.... ......++++.
T Consensus 153 G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~-~e~~~~~f~~~ 231 (305)
T 2fp4_A 153 GRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGN-AEENAAEFLKQ 231 (305)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSS-HHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCc-hhhHHHHHHHH
Confidence 3699998766677788899988654432 3322 1 13444431 2356677775533211 01223455554
Q ss_pred h---CCCCCEEEEchHH
Q 033201 94 L---GPTVPLFGVCMGL 107 (125)
Q Consensus 94 ~---~~~~PvLGIC~G~ 107 (125)
. .++|||..++-|-
T Consensus 232 ~~~~~~~KPVv~~k~G~ 248 (305)
T 2fp4_A 232 HNSGPKSKPVVSFIAGL 248 (305)
T ss_dssp HSCSTTCCCEEEEEECT
T ss_pred HHHhcCCCCEEEEEecC
Confidence 2 4589999998763
No 478
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=23.90 E-value=1.3e+02 Score=22.79 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCCCeEEEEECCCCch-H-HHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEE-ECCCCCCcCCchHHHHHHHHh-CC
Q 033201 22 NNKNPIIVIDNYDSFT-Y-NLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVL-ISPGPGAPQDSGISLQTVLEL-GP 96 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~-~-~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiI-i~GG~~~~~~~~~~~~~I~~~-~~ 96 (125)
....||.++..+.++. . ....++++ .|..+.+....+..........-|.+| ||-+ + +..+..+.++.+ ++
T Consensus 48 ~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~~~~se~~~~~~~~~~~dlvI~iS~S-G---eT~e~l~a~~~ak~~ 123 (366)
T 3knz_A 48 RGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQG-G---GSLSTLAAMERARNV 123 (366)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEEECGGGCCHHHHHHSCSEEEEEEESS-S---CCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEEEcchHHHhhccCCCCCCEEEEEcCC-C---CCHHHHHHHHHHHHc
Confidence 4567999998876653 2 23345554 588877765432222111112334333 3333 2 334455666665 56
Q ss_pred CCCEEEEch
Q 033201 97 TVPLFGVCM 105 (125)
Q Consensus 97 ~~PvLGIC~ 105 (125)
+.++++||-
T Consensus 124 Ga~~IaIT~ 132 (366)
T 3knz_A 124 GHITASMAG 132 (366)
T ss_dssp TCEEEEEES
T ss_pred CCCEEEEEC
Confidence 799999984
No 479
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=23.87 E-value=1.4e+02 Score=22.09 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=32.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-------HHHHhcCCCCEEEECCC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG 77 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~-------~~~~~~~~~dgiIi~GG 77 (125)
..++||++|.+. ..+.+.++ .+.++.++..+... .+++. ..+|.++++|+
T Consensus 139 ~~g~kV~vIG~~----P~i~~~l~-~~~~v~V~d~~p~~g~~p~~~~e~ll-~~aD~viiTGs 195 (270)
T 2h1q_A 139 VKGKKVGVVGHF----PHLESLLE-PICDLSILEWSPEEGDYPLPASEFIL-PECDYVYITCA 195 (270)
T ss_dssp TTTSEEEEESCC----TTHHHHHT-TTSEEEEEESSCCTTCEEGGGHHHHG-GGCSEEEEETH
T ss_pred cCCCEEEEECCC----HHHHHHHh-CCCCEEEEECCCCCCCCChHHHHHHh-hcCCEEEEEee
Confidence 356899999763 33555554 47888888754211 12222 37999999997
No 480
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=23.87 E-value=54 Score=25.06 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=4.1
Q ss_pred CeEEEEEC
Q 033201 25 NPIIVIDN 32 (125)
Q Consensus 25 ~~I~vid~ 32 (125)
|||+++|.
T Consensus 3 mki~~~d~ 10 (352)
T 3gg9_A 3 LKIAVLDD 10 (352)
T ss_dssp CEEEECCC
T ss_pred eEEEEEcC
Confidence 55555543
No 481
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=23.85 E-value=1e+02 Score=22.63 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=23.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (125)
Q Consensus 26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~ 56 (125)
..+||++.+.-...+.+.|+.+|+++++...
T Consensus 45 ~~LIinn~~~D~~~L~~~f~~LgF~V~~~~d 75 (272)
T 3h11_A 45 ICLIIDCIGNETELLRDTFTSLGYEVQKFLH 75 (272)
T ss_dssp EEEEEESSCCCCSHHHHHHHHHTEEEEEEES
T ss_pred EEEEECCchHHHHHHHHHHHHCCCEEEEeeC
Confidence 3566777554456799999999999998864
No 482
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=23.83 E-value=66 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=13.5
Q ss_pred HHHHHHh-CCCCCEEEEc
Q 033201 88 LQTVLEL-GPTVPLFGVC 104 (125)
Q Consensus 88 ~~~I~~~-~~~~PvLGIC 104 (125)
...|++. .-++|+.|+|
T Consensus 127 ~~ai~EA~~l~IPvIalv 144 (241)
T 2xzm_B 127 FQAIKEASYVNIPVIALC 144 (241)
T ss_dssp HHHHHHHTTTTCCEEECC
T ss_pred hHHHHHHHHhCCCEEEEe
Confidence 3567775 6789999998
No 483
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=23.73 E-value=63 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCCeEEEE-ECCCCchH-----HHHHHHHhCCCeEEEEe
Q 033201 23 NKNPIIVI-DNYDSFTY-----NLCQYMGELGYHFEVYR 55 (125)
Q Consensus 23 ~~~~I~vi-d~~~~~~~-----~i~~~l~~~g~~~~v~~ 55 (125)
+.|||++. |+.-.... .+.++|++.|+++.=+-
T Consensus 2 ~~MkIaigsDha~~lK~~~i~~~l~~~L~~~G~eV~D~G 40 (214)
T 3ono_A 2 NAMKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVG 40 (214)
T ss_dssp CCCEEEECCCGGGGGGHHHHHHHHHHHHHHTTCEEEECS
T ss_pred CccEEEEECCCcHHHHChhHHHHHHHHHHHCCCEEEEcC
Confidence 34788877 55322356 68889999998886543
No 484
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=23.72 E-value=91 Score=22.79 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCeEEEEECC----CCc-hHHHH-HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201 24 KNPIIVIDNY----DSF-TYNLC-QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (125)
Q Consensus 24 ~~~I~vid~~----~~~-~~~i~-~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~ 94 (125)
.||+-|+-.+ +++ ..++. +++++--+++.++.+-+.+.+.. ...|=--..||++.+...+++.+.|.++
T Consensus 3 ~Mr~dvlTlFPe~f~~~l~~si~grA~~~gl~~i~~~n~Rdf~~dkh--~~VDD~PyGGGaGMVm~~ePl~~al~~~ 77 (233)
T 3ief_A 3 KFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKH--HSVDDTPAGGGAGMVMRADVLAAALDSC 77 (233)
T ss_dssp CEEEEEEESCGGGSSGGGGSHHHHHHHHTTSEEEEEEEGGGGC-------CCEECCTTCCSSCEECHHHHHHHHTTS
T ss_pred ceEEEEEEEChHHhhhHhhccHHHHHHHCCCeEEEEEcchhhcCCCC--cccCCCCCCCCCCcEeeHHHHHHHHHHh
Confidence 4678777433 332 33454 55554446777776532222222 2456556789999887777776777665
No 485
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=23.71 E-value=1e+02 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHh--cCCCCEEEECC
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELK--RKNPRGVLISP 76 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~--~~~~dgiIi~G 76 (125)
+..+||++.+. ......+.|++.|+ +++..+. ..+.+++. ..++|++++.+
T Consensus 13 ~~~~kIl~~~~---i~~~~~~~l~~~g~~~v~~~~~-~~~~~~l~~~~~~~d~l~v~~ 66 (416)
T 3k5p_A 13 RDRINVLLLEG---ISQTAVEYFKSSGYTNVTHLPK-ALDKADLIKAISSAHIIGIRS 66 (416)
T ss_dssp GGGSCEEECSC---CCHHHHHHHHHTTCCCEEECSS-CCCHHHHHHHHTTCSEEEECS
T ss_pred CCCcEEEEECC---CCHHHHHHHHHCCCcEEEECCC-CCCHHHHHHHccCCEEEEEcC
Confidence 34578888764 33455677888888 6655432 23444432 14788887644
No 486
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=23.25 E-value=23 Score=26.01 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=39.4
Q ss_pred CeEEEEECCCCchHHHHHHHH-hCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~-~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv 100 (125)
.+|+|+|........+...|. ..|+.+..........+.+....+|.||+-= ..|...+ .+.+.|++. ...+|+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~~dlvl~D~--~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDL--VMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEES--BCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHhcCcccCCCcE
Confidence 579999875555556667775 3577665432110111222223688887611 1122222 233444432 246888
Q ss_pred EEEc
Q 033201 101 FGVC 104 (125)
Q Consensus 101 LGIC 104 (125)
+-+.
T Consensus 97 i~~s 100 (358)
T 3bre_A 97 IVLS 100 (358)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 487
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=22.99 E-value=61 Score=23.49 Aligned_cols=79 Identities=6% Similarity=0.002 Sum_probs=42.1
Q ss_pred CCCeEEEEECCCCchHH----HHHHHHhCCCeEEEE-eCCCCCH----HHHhcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 23 NKNPIIVIDNYDSFTYN----LCQYMGELGYHFEVY-RNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~----i~~~l~~~g~~~~v~-~~~~~~~----~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
..++++++...+.|... +.+.+++.|.++.-. .++.... ..+...++|.|++.+.+ .+...+...+++
T Consensus 123 g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~---~~~~~i~~q~~~ 199 (327)
T 3ckm_A 123 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASP---TELAEMKGYLTN 199 (327)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCH---HHHHHHHHHHTT
T ss_pred CCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCH---HHHHHHHHHHHh
Confidence 34577777554555444 445566667665332 2221111 12234589999997642 122223344444
Q ss_pred hCCCCCEEEEc
Q 033201 94 LGPTVPLFGVC 104 (125)
Q Consensus 94 ~~~~~PvLGIC 104 (125)
+..+.|++|.-
T Consensus 200 ~g~~~~~~~~~ 210 (327)
T 3ckm_A 200 IVPNLAIYASS 210 (327)
T ss_dssp TCTTCEEEECG
T ss_pred hhccCCEEeee
Confidence 55678888864
No 488
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=22.86 E-value=1.8e+02 Score=20.58 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEE---EeCCCCC----HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (125)
Q Consensus 23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v---~~~~~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I 91 (125)
..+||++|...+.+. ..+.+.+++.|.++.. ++..... ...+...++|+|++.+.. .......+.+
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~ 210 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASG---TAAALPQTTL 210 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCH---HHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 346888884333332 2366778889987542 2222222 122333478999885521 1111233444
Q ss_pred HHhCCCCCEEEEc
Q 033201 92 LELGPTVPLFGVC 104 (125)
Q Consensus 92 ~~~~~~~PvLGIC 104 (125)
++..-+.|++++.
T Consensus 211 ~~~g~~~p~i~~~ 223 (362)
T 3snr_A 211 RERGYNGLIYQTH 223 (362)
T ss_dssp HHTTCCSEEEECG
T ss_pred HHcCCCccEEecc
Confidence 5555567888764
No 489
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=22.83 E-value=1.3e+02 Score=17.79 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=17.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEE
Q 033201 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (125)
Q Consensus 23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~ 52 (125)
..++|++....+.........|++.|+++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~ 84 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAV 84 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEE
Confidence 345666665433223456678888888443
No 490
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=22.76 E-value=1.2e+02 Score=20.95 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=20.8
Q ss_pred CCCeEEEEEC-----CCCchHHHH----HHHHhC--CCeEEEEeC
Q 033201 23 NKNPIIVIDN-----YDSFTYNLC----QYMGEL--GYHFEVYRN 56 (125)
Q Consensus 23 ~~~~I~vid~-----~~~~~~~i~----~~l~~~--g~~~~v~~~ 56 (125)
++|||++|.- ..+++..+. +.+++. |.++++++.
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 4678999953 234554444 444554 889988865
No 491
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=22.74 E-value=71 Score=22.56 Aligned_cols=30 Identities=3% Similarity=0.220 Sum_probs=16.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 033201 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~ 54 (125)
++++|..-.++.-..+.+.|.+.|+.+.+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~ 59 (271)
T 4iin_A 30 KNVLITGASKGIGAEIAKTLASMGLKVWIN 59 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 344443332233445667777777776554
No 492
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=22.65 E-value=1e+02 Score=21.54 Aligned_cols=49 Identities=8% Similarity=-0.107 Sum_probs=29.2
Q ss_pred hcCCCCEEEECCCCCCcCC-chHHHHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201 65 KRKNPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (125)
Q Consensus 65 ~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~-~~~~~PvLGIC~G~QlLa~a 113 (125)
....+|.||.+..|..... ..+...+.|. ...++|++=-=-++..+..+
T Consensus 95 ~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~a 145 (178)
T 1vmd_A 95 AEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISS 145 (178)
T ss_dssp HTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHS
T ss_pred HCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHH
Confidence 3457999999888644322 2233344444 36789987555555555544
No 493
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=22.65 E-value=1.2e+02 Score=22.19 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=34.4
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCC-eEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCc
Q 033201 25 NPIIVIDNYDSF-TYNLCQYMGELGY-HFEVYRNDELTVEELKR--KNPRGVLISPGPGAP 81 (125)
Q Consensus 25 ~~I~vid~~~~~-~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~ 81 (125)
|+|+|.... ++ -..+.+.|.+.|. ++.....+ .+.+++.. .++|.||-..|...+
T Consensus 1 M~VlVtGat-G~iG~~l~~~L~~~g~~~v~~~d~~-~d~~~l~~~~~~~d~Vih~a~~~~~ 59 (369)
T 3st7_A 1 MNIVITGAK-GFVGKNLKADLTSTTDHHIFEVHRQ-TKEEELESALLKADFIVHLAGVNRP 59 (369)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHHCCCEEEECCTT-CCHHHHHHHHHHCSEEEECCCSBCT
T ss_pred CEEEEECCC-CHHHHHHHHHHHhCCCCEEEEECCC-CCHHHHHHHhccCCEEEECCcCCCC
Confidence 578877543 44 3568888888887 77665441 23344321 368999988775543
No 494
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=22.57 E-value=26 Score=27.12 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred CeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCC-CCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 25 ~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
+|++||--..... ..+.+.|++ |+++...... +.+.+.+ ...++|.||--|| +++.|..+. +..
T Consensus 53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~---iA~ 127 (387)
T 3uhj_A 53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKI---VAI 127 (387)
T ss_dssp SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHH---HHH
T ss_pred CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHH---HHH
Confidence 7888884332222 234456777 8877322222 1222222 2247899887777 454444332 222
Q ss_pred hCCCCCEEEEc
Q 033201 94 LGPTVPLFGVC 104 (125)
Q Consensus 94 ~~~~~PvLGIC 104 (125)
..++|+..|-
T Consensus 128 -~~~~p~i~IP 137 (387)
T 3uhj_A 128 -DTGARIVIAP 137 (387)
T ss_dssp -HTTCEEEECC
T ss_pred -hcCCCEEEec
Confidence 2357776553
No 495
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=22.45 E-value=75 Score=25.09 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=37.5
Q ss_pred eEEEEECCC---CchHHHHHHHHhCCCeEE--EEeCCCCCHHHH-------hcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201 26 PIIVIDNYD---SFTYNLCQYMGELGYHFE--VYRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (125)
Q Consensus 26 ~I~vid~~~---~~~~~i~~~l~~~g~~~~--v~~~~~~~~~~~-------~~~~~dgiIi~GG~~~~~~~~~~~~~I~~ 93 (125)
|++||-... .+...+.+.|++.|+++. ++.- +.+.+.+ .. ++|.||--|| +++.|..+. +..
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~g-e~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~---iA~ 166 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGG-EASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKY---IAH 166 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECS-CCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHH---HHH
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCC-CCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHH---HHH
Confidence 788773211 234456777888888873 3322 2233222 23 7899985555 344444332 222
Q ss_pred hCCCCCEEEE
Q 033201 94 LGPTVPLFGV 103 (125)
Q Consensus 94 ~~~~~PvLGI 103 (125)
..++|+..|
T Consensus 167 -~~giP~I~I 175 (450)
T 1ta9_A 167 -SMNLPSIIC 175 (450)
T ss_dssp -HTTCCEEEE
T ss_pred -hcCCCEEEE
Confidence 245777665
No 496
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=22.44 E-value=1.1e+02 Score=22.61 Aligned_cols=33 Identities=6% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 033201 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~ 57 (125)
+++|+|+.- +.....+...+++.|+++.+++.+
T Consensus 1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKN 33 (363)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888853 223456778899999999988654
No 497
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.39 E-value=2.8e+02 Score=21.67 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeE
Q 033201 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHF 51 (125)
Q Consensus 22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~ 51 (125)
..+.||.++-+.++..-...+.+.+.|.++
T Consensus 291 ~~g~rvaiitngGG~~~laaD~~~~~Gl~l 320 (457)
T 2csu_A 291 PRGNKVAIMTNAGGPGVLTADELDKRGLKL 320 (457)
T ss_dssp CSSSEEEEEESCHHHHHHHHHHHHTTTCEE
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 356799999997776666778888888774
No 498
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=22.38 E-value=1.4e+02 Score=20.07 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=21.1
Q ss_pred CeEEEE-ECCC-CchHHHHHHHHhCCCeEEEE
Q 033201 25 NPIIVI-DNYD-SFTYNLCQYMGELGYHFEVY 54 (125)
Q Consensus 25 ~~I~vi-d~~~-~~~~~i~~~l~~~g~~~~v~ 54 (125)
|||+|- |+.+ .+...+.++|++.|+++.=+
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~ 33 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDK 33 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTTCEEEEC
T ss_pred cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEe
Confidence 677766 4432 23567999999999987654
No 499
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=22.33 E-value=2.2e+02 Score=20.39 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=27.8
Q ss_pred CCeEEEEECCCCchHH-HHHHHHh-CCCeEE-EEeCCC---------------CCHHHHhcCCCCEEEECC
Q 033201 24 KNPIIVIDNYDSFTYN-LCQYMGE-LGYHFE-VYRNDE---------------LTVEELKRKNPRGVLISP 76 (125)
Q Consensus 24 ~~~I~vid~~~~~~~~-i~~~l~~-~g~~~~-v~~~~~---------------~~~~~~~~~~~dgiIi~G 76 (125)
++||+||..+ ..... ..+.+.+ .++++. +.+.+. .+.+++.. ++|.|+|+-
T Consensus 6 ~~~igiIG~G-~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~-~~D~V~i~t 74 (308)
T 3uuw_A 6 NIKMGMIGLG-SIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK-KCDCIFLHS 74 (308)
T ss_dssp CCEEEEECCS-HHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT-TCSEEEECC
T ss_pred cCcEEEEecC-HHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh-cCCEEEEeC
Confidence 4688888763 22332 5555655 456665 333220 12344443 789999854
No 500
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=22.32 E-value=2.5e+02 Score=21.12 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=39.6
Q ss_pred cCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (125)
Q Consensus 19 ~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG 77 (125)
.-.-.+++++||....-.-..+...|.+.++.+++.+....++.++- .+.|-||..=|
T Consensus 174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~-~~ADIvV~A~G 231 (303)
T 4b4u_A 174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELV-KQADIIVGAVG 231 (303)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-HTCSEEEECSC
T ss_pred CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHh-hcCCeEEeccC
Confidence 33456789999976433446677888889999998875544555543 36787776555
Done!