Query 033206
Match_columns 125
No_of_seqs 111 out of 336
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 78.8 0.91 3.1E-05 33.0 1.9 27 5-38 49-75 (130)
2 3u5c_R RP51A, 40S ribosomal pr 59.5 5.7 0.00019 29.0 2.5 27 5-38 49-75 (136)
3 3iz6_Q 40S ribosomal protein S 50.1 6.3 0.00021 28.9 1.4 27 5-38 49-75 (141)
4 2exn_A Hypothetical protein BO 15.0 41 0.0014 23.3 0.4 10 27-36 10-19 (136)
5 2ixm_A Serine/threonine-protei 11.3 2.1E+02 0.0071 23.0 3.6 46 12-60 136-181 (303)
6 2ixn_A Serine/threonine-protei 9.3 2.6E+02 0.009 22.5 3.5 46 12-60 135-181 (310)
7 1afo_A Glycophorin A; integral 7.9 3E+02 0.01 15.8 2.4 17 92-108 17-33 (40)
8 2hac_A T-cell surface glycopro 6.8 3.2E+02 0.011 15.1 2.1 16 90-105 9-24 (33)
9 1iq5_B Ca2+/calmodulin depende 6.6 3.5E+02 0.012 14.3 2.1 16 14-29 7-22 (27)
10 1wwj_A Circadian clock protein 6.4 1.7E+02 0.0057 20.1 0.9 9 5-13 75-83 (105)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=78.76 E-value=0.91 Score=33.00 Aligned_cols=27 Identities=44% Similarity=0.564 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccccccchhH
Q 033206 5 RLAGDMTHLASVLVLLLKIHTIKSCSGVSLKTQE 38 (125)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlktQ~ 38 (125)
|++|...| +.|-.+...+.|||+|.|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 67888888 3455566788999999996
No 2
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=59.48 E-value=5.7 Score=28.98 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccccccchhH
Q 033206 5 RLAGDMTHLASVLVLLLKIHTIKSCSGVSLKTQE 38 (125)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlktQ~ 38 (125)
|++|...|+ .|-...-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 567777665 344455678999999997
No 3
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.06 E-value=6.3 Score=28.91 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=19.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccccccchhH
Q 033206 5 RLAGDMTHLASVLVLLLKIHTIKSCSGVSLKTQE 38 (125)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlktQ~ 38 (125)
|++|...|+ .|-...-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 567777775 344455578999999996
No 4
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=14.98 E-value=41 Score=23.33 Aligned_cols=10 Identities=10% Similarity=0.405 Sum_probs=8.1
Q ss_pred hhccccccch
Q 033206 27 KSCSGVSLKT 36 (125)
Q Consensus 27 kS~~GiSlkt 36 (125)
|||.|++++.
T Consensus 10 KSc~g~~l~~ 19 (136)
T 2exn_A 10 AECGATTQSE 19 (136)
T ss_dssp TTTEEECCGG
T ss_pred ccCCceecCc
Confidence 7888888876
No 5
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=11.28 E-value=2.1e+02 Score=23.00 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhHHHHHHHHhhhhhcccchHHHHH
Q 033206 12 HLASVLVLLLKIHTIKSCSGVSLKTQELYALVFTTRYLDIFTDFVSIRL 60 (125)
Q Consensus 12 hl~s~~iLl~ki~~~kS~~GiSlktQ~ly~~vf~~Ryldl~~~~~s~Yn 60 (125)
|=+++++-+..+.+..- +.-+-..--++....||+++.+....+|+
T Consensus 136 HEL~Fl~fL~cL~klgi---l~~~d~~a~vL~vF~~Yl~l~R~Lq~tY~ 181 (303)
T 2ixm_A 136 HEAAFAAFLCCLCKIGV---LRVDDQIAIVFKVFNRYLEVMRKLQKTYR 181 (303)
T ss_dssp HHHHHHHHHHHHHHTTS---SCGGGHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC---CccchhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 55566666666665432 22233445566667899999999999985
No 6
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=9.30 E-value=2.6e+02 Score=22.50 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhhccccc-cchhHHHHHHHHhhhhhcccchHHHHH
Q 033206 12 HLASVLVLLLKIHTIKSCSGVS-LKTQELYALVFTTRYLDIFTDFVSIRL 60 (125)
Q Consensus 12 hl~s~~iLl~ki~~~kS~~GiS-lktQ~ly~~vf~~Ryldl~~~~~s~Yn 60 (125)
|=+++++-+..+.+..- ++ -.-..--++....||+++.+....+|+
T Consensus 135 HEL~Fl~fL~cL~klgi---l~~~~D~~a~vL~vF~~Yl~l~R~Lq~tY~ 181 (310)
T 2ixn_A 135 HELNFMCLLYGLYSYGI---FNLSNDSTNLVLKVFIEYLKIMRILETKYW 181 (310)
T ss_dssp HHHHHHHHHHHHHHTTS---CCHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566666666665432 22 112334555667799999999999994
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=7.89 E-value=3e+02 Score=15.84 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHhHHHHHHHHHHhhhh
Q 033206 92 IPWISGLVQTLLYADFF 108 (125)
Q Consensus 92 ~~i~~givQt~ly~DFf 108 (125)
..+.||++-|+|..++.
T Consensus 17 ~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 17 FGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34579999999987764
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.76 E-value=3.2e+02 Score=15.05 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.1
Q ss_pred chHHhHHHHHHHHHHh
Q 033206 90 HWIPWISGLVQTLLYA 105 (125)
Q Consensus 90 ~~~~i~~givQt~ly~ 105 (125)
|-+.++-|+|=|+||+
T Consensus 9 DgiL~iYgii~T~Ly~ 24 (33)
T 2hac_A 9 DGILFIYGVILTALFL 24 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577789999999886
No 9
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=6.58 E-value=3.5e+02 Score=14.26 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhc
Q 033206 14 ASVLVLLLKIHTIKSC 29 (125)
Q Consensus 14 ~s~~iLl~ki~~~kS~ 29 (125)
++.++|+..|.+.||-
T Consensus 7 l~Tvilvk~Ml~~~sf 22 (27)
T 1iq5_B 7 LDTLILVKAMGHRKRF 22 (27)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHhcccc
Confidence 3667888889888873
No 10
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=6.39 E-value=1.7e+02 Score=20.12 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=6.8
Q ss_pred hhhhhhHHH
Q 033206 5 RLAGDMTHL 13 (125)
Q Consensus 5 r~~gd~~hl 13 (125)
|++||++..
T Consensus 75 riiGDLsd~ 83 (105)
T 1wwj_A 75 KIIGDLSDR 83 (105)
T ss_dssp HHHHHHHHT
T ss_pred eEeecCCCH
Confidence 788998753
Done!