Your job contains 1 sequence.
>033207
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWL
VVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRS
DPYQM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033207
(125 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030200 - symbol:AT1G72530 "AT1G72530" species... 309 1.3e-27 1
TAIR|locus:2086310 - symbol:RIP1 "RNA-editing factor inte... 218 1.7e-17 1
TAIR|locus:2083348 - symbol:MORF3 "multiple organellar RN... 192 3.3e-15 1
TAIR|locus:2206639 - symbol:AT1G32580 "AT1G32580" species... 184 2.3e-14 1
TAIR|locus:2063389 - symbol:MORF6 "multiple organellar RN... 183 3.0e-14 1
TAIR|locus:2051003 - symbol:DAL1 "differentiation and gre... 178 1.0e-13 1
TAIR|locus:2200131 - symbol:MORF9 "multiple organellar RN... 176 1.6e-13 1
UNIPROTKB|Q2R8U1 - symbol:Os11g0216400 "Os11g0216400 prot... 165 1.1e-11 1
TAIR|locus:2119782 - symbol:MORF1 "multiple organellar RN... 133 4.2e-08 1
TAIR|locus:2156344 - symbol:MORF4 "AT5G44780" species:370... 132 1.2e-07 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 94 0.00060 1
>TAIR|locus:2030200 [details] [associations]
symbol:AT1G72530 "AT1G72530" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 IPI:IPI00938919 RefSeq:NP_001154468.1
UniGene:At.50962 EnsemblPlants:AT1G72530.2 GeneID:843585
KEGG:ath:AT1G72530 OMA:YDEKYHA ArrayExpress:F4IDD2 Uniprot:F4IDD2
Length = 192
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 64/119 (53%), Positives = 80/119 (67%)
Query: 6 ILRCPLNLTAAIYRRRHLQXXXXXXXXXXXXXXXTVTQLTRLPSLLEGCDYKHWLVVMEA 65
I+R PLNLTAA+ R + ++L R+PSL+EGCDYKHWLV+M+
Sbjct: 4 IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63
Query: 66 PKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122
P GYP R+ IV +V+TLA ALG EE+AK+SIYSVSTKYYYAFGC+ + L IRS P
Sbjct: 64 PNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLP 122
>TAIR|locus:2086310 [details] [associations]
symbol:RIP1 "RNA-editing factor interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0050897 "cobalt ion
binding" evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0016554 "cytidine to uridine editing" evidence=IMP] [GO:0080156
"mitochondrial mRNA modification" evidence=IMP] GO:GO:0005739
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016554
GO:GO:0050897 EMBL:AP000370 GO:GO:0080156 EMBL:AF428427
IPI:IPI00532410 RefSeq:NP_566496.1 UniGene:At.24349
UniGene:At.67750 IntAct:Q9LKA5 STRING:Q9LKA5 PaxDb:Q9LKA5
PRIDE:Q9LKA5 EnsemblPlants:AT3G15000.1 GeneID:820729
KEGG:ath:AT3G15000 GeneFarm:775 TAIR:At3g15000 eggNOG:NOG243672
HOGENOM:HOG000243016 InParanoid:Q9LKA5 OMA:GAPPQNN PhylomeDB:Q9LKA5
ProtClustDB:CLSN2915005 Genevestigator:Q9LKA5 GermOnline:AT3G15000
Uniprot:Q9LKA5
Length = 395
Score = 218 (81.8 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA +G E++A+ IYSVST+ YYAFG
Sbjct: 91 LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150
>TAIR|locus:2083348 [details] [associations]
symbol:MORF3 "multiple organellar RNA editing factor 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0050897
"cobalt ion binding" evidence=IDA] [GO:1900864 "mitochondrial RNA
modification" evidence=IMP] GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050897 EMBL:AC023912
HOGENOM:HOG000272676 GO:GO:1900864 UniGene:At.18838
UniGene:At.74889 IPI:IPI00530723 RefSeq:NP_187335.1 STRING:Q9M7Y5
PRIDE:Q9M7Y5 EnsemblPlants:AT3G06790.1 GeneID:819864
KEGG:ath:AT3G06790 TAIR:At3g06790 InParanoid:Q9M7Y5
ProtClustDB:CLSN2684671 Genevestigator:Q9M7Y5 Uniprot:Q9M7Y5
Length = 244
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
LL+GCDY+HWL+VME P +E++N YVKTL S LG +E+AKK IYSV T Y FG
Sbjct: 88 LLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYTGFG 147
>TAIR|locus:2206639 [details] [associations]
symbol:AT1G32580 "AT1G32580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 EMBL:AC055769
HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY063995
EMBL:AY096695 IPI:IPI00520554 PIR:D86451 RefSeq:NP_174536.1
UniGene:At.27111 IntAct:Q9C7Y2 STRING:Q9C7Y2 PaxDb:Q9C7Y2
PRIDE:Q9C7Y2 EnsemblPlants:AT1G32580.1 GeneID:840152
KEGG:ath:AT1G32580 TAIR:At1g32580 eggNOG:NOG251524 OMA:GENATKQ
PhylomeDB:Q9C7Y2 ArrayExpress:Q9C7Y2 Genevestigator:Q9C7Y2
Uniprot:Q9C7Y2
Length = 229
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
T + L GCDY+HWL+VM+ P G + ++++ YV+TLA +G EE+AKK IY+VS +
Sbjct: 82 TEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCE 141
Query: 104 YYYAFGCK 111
Y+ FGC+
Sbjct: 142 RYFGFGCE 149
>TAIR|locus:2063389 [details] [associations]
symbol:MORF6 "multiple organellar RNA editing factor 6"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC004667
HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY072439
EMBL:BT003414 IPI:IPI00523082 PIR:B84766 RefSeq:NP_181067.1
UniGene:At.37691 IntAct:O82169 PaxDb:O82169 PRIDE:O82169
EnsemblPlants:AT2G35240.1 GeneID:818091 KEGG:ath:AT2G35240
TAIR:At2g35240 eggNOG:NOG317940 OMA:SPTIFHA PhylomeDB:O82169
ArrayExpress:O82169 Genevestigator:O82169 Uniprot:O82169
Length = 232
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
T + L GCDY+HWL+VME P G + ++++ YV+TLA +G EE+A+K IY+VS +
Sbjct: 85 TEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCE 144
Query: 104 YYYAFGCK 111
Y+ FGC+
Sbjct: 145 RYFGFGCE 152
>TAIR|locus:2051003 [details] [associations]
symbol:DAL1 "differentiation and greening-like 1"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0002103 "endonucleolytic
cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA,
4.5S-rRNA, 5S-rRNA)" evidence=IMP] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009657 "plastid organization" evidence=IMP]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009658
"chloroplast organization" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009657 EMBL:AC002332
EMBL:AF446351 EMBL:AY097425 EMBL:AK228465 IPI:IPI00521047
PIR:D84745 PIR:T52623 RefSeq:NP_180901.1 UniGene:At.111
IntAct:O22793 STRING:O22793 PaxDb:O22793 PRIDE:O22793
EnsemblPlants:AT2G33430.1 GeneID:817907 KEGG:ath:AT2G33430
TAIR:At2g33430 eggNOG:NOG268944 HOGENOM:HOG000272676
InParanoid:O22793 OMA:YSRRREN PhylomeDB:O22793
ProtClustDB:CLSN2682809 ArrayExpress:O22793 Genevestigator:O22793
GO:GO:0002103 Uniprot:O22793
Length = 219
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
T + L GCDY+HWL+VM+ P G + ++++ Y++TLA +G EE+AKK IY+VS +
Sbjct: 73 TEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCE 132
Query: 104 YYYAFGCK 111
Y FGC+
Sbjct: 133 RYLGFGCE 140
>TAIR|locus:2200131 [details] [associations]
symbol:MORF9 "multiple organellar RNA editing factor 9"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:1900865
"chloroplast RNA modification" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0006399 "tRNA metabolic process"
evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0045036 "protein targeting to
chloroplast" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
GO:GO:0009570 GO:GO:0009941 EMBL:AC011661 GO:GO:1900865
EMBL:BT005071 EMBL:AK117508 IPI:IPI00532519 RefSeq:NP_172610.1
UniGene:At.42133 IntAct:Q9LPZ1 STRING:Q9LPZ1 PRIDE:Q9LPZ1
ProMEX:Q9LPZ1 EnsemblPlants:AT1G11430.1 GeneID:837685
KEGG:ath:AT1G11430 TAIR:At1g11430 InParanoid:Q9LPZ1 OMA:NEQRETI
PhylomeDB:Q9LPZ1 ProtClustDB:CLSN2681966 ArrayExpress:Q9LPZ1
Genevestigator:Q9LPZ1 Uniprot:Q9LPZ1
Length = 232
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 50 LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
+L GCDY HWL+VME PK P RD++++ Y+ TLA+ LG E+AKK++Y+ ST Y F
Sbjct: 81 MLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 140
Query: 109 GC 110
C
Sbjct: 141 QC 142
>UNIPROTKB|Q2R8U1 [details] [associations]
symbol:Os11g0216400 "Os11g0216400 protein" species:39947
"Oryza sativa Japonica Group" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] EMBL:DP000010 EMBL:AP008217
GO:GO:0004252 eggNOG:NOG12793 EMBL:CM000148 RefSeq:NP_001067510.1
UniGene:Os.39944 STRING:Q2R8U1 EnsemblPlants:LOC_Os11g11020.1
GeneID:4350082 KEGG:osa:4350082 OMA:LITMEFP ProtClustDB:CLSN2698490
Uniprot:Q2R8U1
Length = 374
Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
L EGCDY HWL+ ME P P R+E++ Y++TLA +G E+AKK +Y+ ST Y F
Sbjct: 85 LFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
>TAIR|locus:2119782 [details] [associations]
symbol:MORF1 "multiple organellar RNA editing factor 1"
species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:1900864 "mitochondrial RNA modification"
evidence=IMP] [GO:1900865 "chloroplast RNA modification"
evidence=IMP] GO:GO:0005739 GO:GO:0009507 EMBL:CP002687
EMBL:AL021637 EMBL:AL161552 HOGENOM:HOG000243016 EMBL:BT002761
IPI:IPI00534157 PIR:T04886 RefSeq:NP_193735.1 UniGene:At.32756
STRING:O49429 PaxDb:O49429 PRIDE:O49429 EnsemblPlants:AT4G20020.1
GeneID:827747 KEGG:ath:AT4G20020 TAIR:At4g20020 eggNOG:NOG285776
InParanoid:O49429 OMA:HWLITMD PhylomeDB:O49429
ProtClustDB:CLSN2685724 Genevestigator:O49429 GO:GO:1900865
GO:GO:1900864 Uniprot:O49429
Length = 419
Score = 133 (51.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 43 QLTRLPSLLEGCDYKHWLVVMEAPKGYPPR--DEIVNGYVKTLASALGCE-EDAKKSIYS 99
++T L EGCDY HWL+ M+ K P+ +E+V Y +T A LG E+AK+ +Y+
Sbjct: 74 EITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYA 133
Query: 100 VSTKYYYAF 108
ST Y F
Sbjct: 134 CSTTTYQGF 142
>TAIR|locus:2156344 [details] [associations]
symbol:MORF4 "AT5G44780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0048481 "ovule development" evidence=RCA]
EMBL:CP002688 GenomeReviews:BA000015_GR eggNOG:NOG12793
EMBL:AB016874 EMBL:AC002342 HOGENOM:HOG000243016 EMBL:BT012578
EMBL:AK221549 IPI:IPI00548630 RefSeq:NP_199291.1 UniGene:At.30053
PaxDb:O48582 PRIDE:O48582 EnsemblPlants:AT5G44780.1 GeneID:834507
KEGG:ath:AT5G44780 TAIR:At5g44780 InParanoid:O48582 OMA:RMSIPGQ
PhylomeDB:O48582 ProtClustDB:CLSN2916734 Genevestigator:O48582
Uniprot:O48582
Length = 723
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 52 EGCDYKHWLVVMEAPK-GYPPRDEIVNGYVKTLASALGCE-EDAKKSIYSVSTKYYYAF 108
EGCD+ HWL+ M PK P R+E+++ + +T A L E+AKK IY++ T Y F
Sbjct: 78 EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGF 136
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 94 (38.1 bits), Expect = 0.00060, P = 0.00060
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 58 HWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGC 110
+W+V+++ P + + +V+ YV+ LA LG E+DA+ SIY S ++ F C
Sbjct: 72 YWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFCC 125
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.140 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 125 110 0.00091 102 3 11 22 0.40 30
29 0.42 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 566 (60 KB)
Total size of DFA: 125 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.86u 0.12s 9.98t Elapsed: 00:00:01
Total cpu time: 9.86u 0.12s 9.98t Elapsed: 00:00:01
Start: Fri May 10 18:23:23 2013 End: Fri May 10 18:23:24 2013