BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033207
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6N|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Pv003920 From Plasmodium Vivax
Length = 187
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 60 LVVMEAPKGYPPRDEIVNGYVKTLASALGCEE 91
+V+ E PK P R+EI V+ ++SALG E
Sbjct: 125 IVIAEVPKISPIREEI----VRNISSALGISE 152
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 44 LTRLPSLLEGCDYKHWLVVMEAPKGYPPRD--EIVNGYVK-----TLASALGCEEDAKKS 96
L+++P+ LE Y HW+ KGY ++ VN + TLAS+ E + K
Sbjct: 152 LSQIPNALEHAFYGHWI------KGYSSKEFQACVNWNINLLDSLTLASS-KQEIEKLKE 204
Query: 97 IYSVSTKYYYAF 108
I+ +++Y Y F
Sbjct: 205 IFITTSEYEYLF 216
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 44 LTRLPSLLEGCDYKHWLVVMEAPKGYPPRD--EIVNGYVK-----TLASALGCEEDAKKS 96
L+++P+ LE Y HW+ KGY ++ VN + TLAS+ E + K
Sbjct: 150 LSQIPNALEHAFYGHWI------KGYSSKEFQACVNWNINLLDSLTLASS-KQEIEKLKE 202
Query: 97 IYSVSTKYYYAF 108
I+ +++Y Y F
Sbjct: 203 IFITTSEYEYLF 214
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp
And Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp
And Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 43 QLTRLPSLLEGCDYKHWLVVMEAPKGYP 70
+LTR+ + L HWLVV +AP+ P
Sbjct: 20 ELTRMANTLLHVPNLHWLVVEDAPRRTP 47
>pdb|3ZU3|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh (Mr, Cleaved Histag)
pdb|3ZU4|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt172
pdb|3ZU5|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt173
Length = 405
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 76 VNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLI 118
V G++ A GCE + KK I V+T+ A G K ++L+I
Sbjct: 13 VRGFICVTAHPTGCEANVKKQIDYVTTEGPIANGPK--RVLVI 53
>pdb|3ZU2|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh (Siras)
Length = 422
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 76 VNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLI 118
V G++ A GCE + KK I V+T+ A G K ++L+I
Sbjct: 30 VRGFICVTAHPTGCEANVKKQIDYVTTEGPIANGPK--RVLVI 70
>pdb|3FDQ|A Chain A, Recognition Of At-Rich Dna Binding Sites By The Mogr
Repressor
pdb|3FDQ|B Chain B, Recognition Of At-Rich Dna Binding Sites By The Mogr
Repressor
Length = 170
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 VKTLASALGCEEDAKKSIYSVSTKYYYA 107
+K +AS G +E + IY + T++Y A
Sbjct: 28 IKKMASEAGIDEQTAEEIYHLLTEFYQA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,220,456
Number of Sequences: 62578
Number of extensions: 101871
Number of successful extensions: 248
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 8
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)