BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033207
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
           thaliana GN=At3g15000 PE=1 SV=1
          Length = 395

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA  +G E++A+  IYSVST+ YYAFG
Sbjct: 91  LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150

Query: 110 C 110
            
Sbjct: 151 A 151


>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
          Length = 230

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 50  LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
           +L GCDY HWL+VME PK   P R+++++ Y+ TLA+ LG  E+AKK++Y+ ST  Y  F
Sbjct: 80  MLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 139

Query: 109 GC 110
            C
Sbjct: 140 QC 141


>sp|Q2J3G9|SUCC_RHOP2 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas
           palustris (strain HaA2) GN=sucC PE=3 SV=1
          Length = 398

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 71  PRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLI 118
           P   I++ + + +A+ALG + D  K   S+ TK Y AF  K +++L I
Sbjct: 161 PATGIMSHHGRAVANALGLKGDQAKQAESLVTKLYTAFLAKDMEMLEI 208


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,887,132
Number of Sequences: 539616
Number of extensions: 1580982
Number of successful extensions: 3228
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3224
Number of HSP's gapped (non-prelim): 29
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)