Query 033207
Match_columns 125
No_of_seqs 71 out of 73
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 70.8 7 0.00024 26.9 4.7 61 57-122 38-100 (114)
2 3abf_A 4-oxalocrotonate tautom 65.8 8.1 0.00028 22.6 3.7 43 69-111 14-56 (64)
3 2x4k_A 4-oxalocrotonate tautom 57.6 14 0.00048 21.0 3.6 41 70-110 17-57 (63)
4 3m21_A Probable tautomerase HP 52.7 13 0.00044 22.5 3.0 42 70-111 17-58 (67)
5 3mb2_A 4-oxalocrotonate tautom 50.3 21 0.00071 21.9 3.7 44 69-112 14-57 (72)
6 3ry0_A Putative tautomerase; o 45.8 26 0.00089 20.9 3.6 43 69-111 13-55 (65)
7 3m20_A 4-oxalocrotonate tautom 44.8 10 0.00034 22.8 1.6 43 69-111 12-54 (62)
8 2opa_A Probable tautomerase YW 43.2 32 0.0011 19.7 3.6 42 69-111 13-55 (61)
9 2bf9_A Pancreatic hormone; tur 41.6 21 0.0007 21.5 2.5 18 64-81 6-23 (36)
10 1bba_A Bovine pancreatic polyp 40.6 17 0.00058 21.9 2.1 18 64-81 6-23 (36)
11 3b64_A Macrophage migration in 39.9 49 0.0017 21.6 4.5 59 48-109 47-108 (112)
12 3ej9_A Alpha-subunit of trans- 39.4 34 0.0012 21.4 3.5 43 69-111 14-56 (76)
13 1otf_A 4-oxalocrotonate tautom 39.2 45 0.0015 19.0 3.8 42 69-110 13-54 (62)
14 2etv_A Iron(III) ABC transport 38.1 34 0.0012 26.4 4.0 20 76-95 137-156 (346)
15 2q8p_A Iron-regulated surface 37.3 19 0.00064 26.0 2.3 20 76-95 96-115 (260)
16 3md9_A Hemin-binding periplasm 36.4 23 0.00078 25.6 2.6 20 76-95 97-116 (255)
17 3n4h_A Putative tautomerase; C 34.6 36 0.0012 23.5 3.3 49 59-109 3-54 (148)
18 2r7a_A Bacterial heme binding 34.6 22 0.00075 25.6 2.3 20 76-95 98-117 (256)
19 2l6m_A Protein dicer; DSRBD, h 34.5 14 0.00048 27.2 1.2 13 105-117 40-52 (121)
20 3g9q_A Ferrichrome-binding pro 34.4 17 0.00057 26.7 1.6 18 78-95 106-123 (279)
21 1efd_N Ferrichrome-binding per 33.5 24 0.00081 25.6 2.3 18 78-95 106-123 (266)
22 3lhs_A Ferrichrome ABC transpo 33.3 44 0.0015 24.5 3.8 24 71-95 118-141 (296)
23 2chu_A CEUE, enterochelin upta 32.6 24 0.00084 26.1 2.3 21 75-95 131-151 (296)
24 1n2z_A Vitamin B12 transport p 32.1 18 0.00061 26.0 1.5 20 76-95 94-113 (245)
25 2aal_A Malonate semialdehyde d 31.9 42 0.0014 22.6 3.2 52 58-109 3-54 (131)
26 3be6_A Putative iron compound- 31.8 26 0.00089 25.7 2.3 20 76-95 123-142 (297)
27 3gfv_A Uncharacterized ABC tra 31.6 29 0.00099 25.7 2.6 22 74-95 130-151 (303)
28 2r79_A Periplasmic binding pro 31.3 27 0.00091 25.8 2.3 20 76-95 97-116 (283)
29 2wi8_A Iron-uptake system-bind 30.0 28 0.00097 26.1 2.3 20 76-95 130-149 (311)
30 3tef_A VCTP, iron(III) ABC tra 29.0 82 0.0028 22.5 4.5 24 73-96 114-137 (292)
31 3psh_A Protein HI_1472; substr 28.2 32 0.0011 25.8 2.3 21 75-95 139-159 (326)
32 4hn9_A Iron complex transport 28.2 31 0.0011 26.3 2.3 21 76-96 151-171 (335)
33 3mwf_A Iron-regulated ABC tran 27.9 33 0.0011 25.3 2.3 18 78-95 118-135 (298)
34 3r5t_A Ferric vibriobactin ABC 27.6 33 0.0011 25.6 2.3 18 78-95 125-142 (305)
35 3tny_A YFIY (ABC transport sys 27.2 34 0.0012 25.4 2.3 18 79-96 133-150 (303)
36 2key_A Putative phage integras 26.7 39 0.0013 20.7 2.2 26 63-88 1-26 (112)
37 4b8y_A FHUD2; transport protei 26.6 27 0.00092 25.6 1.6 16 80-95 114-129 (277)
38 1mww_A Hypothetical protein HI 26.4 66 0.0023 21.4 3.4 53 69-124 72-125 (128)
39 3tlk_A Ferrienterobactin-bindi 26.0 37 0.0013 25.6 2.3 19 77-95 153-171 (326)
40 4h59_A PIAA, iron-compound ABC 25.9 38 0.0013 24.4 2.3 19 78-96 131-149 (308)
41 2xp1_A SPT6; transcription, IW 25.1 29 0.00099 26.0 1.5 45 53-97 55-115 (178)
42 2oml_A Ribosomal large subunit 24.2 30 0.001 24.9 1.5 19 46-68 3-21 (189)
43 3ulx_A Stress-induced transcri 23.8 32 0.0011 25.8 1.6 23 64-88 14-39 (174)
44 1k7j_A Protein YCIO, protein T 23.6 74 0.0025 23.7 3.6 24 94-117 26-49 (206)
45 2qnw_A Acyl carrier protein; m 23.6 60 0.002 19.7 2.6 22 68-89 1-22 (82)
46 1f8p_A Neuropeptide Y (PNPY); 22.8 48 0.0016 19.9 1.9 18 64-81 6-23 (37)
47 1ut7_A No apical meristem prot 22.3 40 0.0014 25.0 1.9 23 64-88 16-41 (171)
48 2xcz_A Possible ATLS1-like lig 20.9 1.3E+02 0.0044 19.5 4.0 44 63-109 8-51 (115)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=70.77 E-value=7 Score=26.86 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=38.9
Q ss_pred ceeEEEeeCCCCCCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeeeeehhhc--cccCC
Q 033207 57 KHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122 (125)
Q Consensus 57 ~HWLVvMe~P~g~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~I~Ee~S--lk~lP 122 (125)
+-|.|+|+.. ++ .+.++.-.+.+..++++ +.+.-+|-..-...--||-+.++|+.. |+..|
T Consensus 38 ~~YIV~lk~~---~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P 100 (114)
T 2w2n_P 38 GTYVVVLKEE---TH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLP 100 (114)
T ss_dssp EEEEEEECTT---CC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTST
T ss_pred CcEEEEECCC---CC-HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCC
Confidence 4679999632 22 34455566667776654 234445544444556799999999877 77776
No 2
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=65.84 E-value=8.1 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~ 111 (125)
.-.+++++....+.|+++||-.++.=+-.+.=--...||||-.
T Consensus 14 ~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~ 56 (64)
T 3abf_A 14 PEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 3346788999999999999965554333333333445777643
No 3
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=57.57 E-value=14 Score=21.04 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeee
Q 033207 70 PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGC 110 (125)
Q Consensus 70 ~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c 110 (125)
-.++++++.-.+.|+++||-.++.-.-++.=--...|||+-
T Consensus 17 e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G 57 (63)
T 2x4k_A 17 EQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAG 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 34778999999999999996665444333333345566654
No 4
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=52.68 E-value=13 Score=22.47 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeee
Q 033207 70 PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 70 ~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~ 111 (125)
-.|+++++...+.++++||-..|.-.-+..=--...||||-.
T Consensus 17 eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 58 (67)
T 3m21_A 17 EQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGE 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCE
Confidence 346789999999999999966665555554445567888754
No 5
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=50.28 E-value=21 Score=21.89 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKF 112 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~I 112 (125)
.-.|.++++...+.+++++|-.+|.-.-+..=--...||||-..
T Consensus 14 ~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 57 (72)
T 3mb2_A 14 TEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGIS 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 34567899999999999999666655544444445677887553
No 6
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=45.77 E-value=26 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~ 111 (125)
.-.+.++++...+.+.+++|-.+|.-.-+..=--...||||=.
T Consensus 13 ~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 55 (65)
T 3ry0_A 13 PQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGR 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTE
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCE
Confidence 3457789999999999999965555444444344456677643
No 7
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=44.84 E-value=10 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~ 111 (125)
.-.|+++++.-.+.++++||-..|.-.-+..=--...||||-.
T Consensus 12 ~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~ 54 (62)
T 3m20_A 12 VGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGK 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCE
Confidence 4467889999999999999965555444333334556777754
No 8
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=43.22 E-value=32 Score=19.70 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHh-hccceEEeeceeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDA-KKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEA-kkkIY~vSt~~yfgF~c~ 111 (125)
.-.|.++++.-.+.|.++||-..+. -..|..+. ...||||-.
T Consensus 13 ~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~-~~~w~~gG~ 55 (61)
T 2opa_A 13 DEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMR-KDHYAVAGK 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEEC-GGGCEETTE
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcC-HHHeeECCE
Confidence 3456678899999999999954443 33333333 345677643
No 9
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=41.58 E-value=21 Score=21.55 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=14.6
Q ss_pred eCCCCCCChHHHHHHHHH
Q 033207 64 EAPKGYPPRDEIVNGYVK 81 (125)
Q Consensus 64 e~P~g~~sr~emId~Yv~ 81 (125)
+.|++..+.|||..+|..
T Consensus 6 ~~PG~dA~~Eela~Y~~~ 23 (36)
T 2bf9_A 6 TYPGDDAPVEDLIRFYND 23 (36)
T ss_dssp CCCCTTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 357779999999988864
No 10
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=40.63 E-value=17 Score=21.93 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=14.6
Q ss_pred eCCCCCCChHHHHHHHHH
Q 033207 64 EAPKGYPPRDEIVNGYVK 81 (125)
Q Consensus 64 e~P~g~~sr~emId~Yv~ 81 (125)
+.|++..+.|||..+|..
T Consensus 6 ~~PG~dA~pEela~Y~~~ 23 (36)
T 1bba_A 6 EYPGDNATPEQMAQYAAE 23 (36)
T ss_dssp CCCSSCSSTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 457779999999998864
No 11
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=39.86 E-value=49 Score=21.56 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.2
Q ss_pred CcccCCCCcceeEEEeeCCCC--CCChHHHHHHHHHHHHHHhC-CHHHhhccceEEeeceeeeee
Q 033207 48 PSLLEGCDYKHWLVVMEAPKG--YPPRDEIVNGYVKTLASALG-CEEDAKKSIYSVSTKYYYAFG 109 (125)
Q Consensus 48 p~L~~Gcdy~HWLVvMe~P~g--~~sr~emId~Yv~TLAkVLG-SeeEAkkkIY~vSt~~yfgF~ 109 (125)
...|.|-+-..=+|...--+| .-.+++++....+.|.+.|| ..++---.|+++. .||||
T Consensus 47 ~~~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~---~wg~~ 108 (112)
T 3b64_A 47 PMHFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPL---HCGWN 108 (112)
T ss_dssp CCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCS---CCEET
T ss_pred eEEECCCCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEhh---HeeEC
Confidence 355666543333444443332 45667888888899999999 5666556666666 78876
No 12
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=39.37 E-value=34 Score=21.45 Aligned_cols=43 Identities=7% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCK 111 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c~ 111 (125)
.-.++++++...+.+.+++|-.+|.-.-+..=--...||||=.
T Consensus 14 ~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~ 56 (76)
T 3ej9_A 14 DEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGE 56 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCE
Confidence 4467789999999999999965555544444445567777654
No 13
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=39.16 E-value=45 Score=19.02 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeeee
Q 033207 69 YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGC 110 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~c 110 (125)
.-.++++++.-.+.|.++||-..|.-.-++.=--...|||+-
T Consensus 13 ~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G 54 (62)
T 1otf_A 13 DEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGG 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECC
Confidence 345667889999999999996554333222222344667764
No 14
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=38.12 E-value=34 Score=26.36 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+.--+++|+++||.||+|++
T Consensus 137 ~~~~i~~lG~~lG~e~~A~~ 156 (346)
T 2etv_A 137 LFRSIELAGXILGREERAHE 156 (346)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 44457789999999888764
No 15
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=37.27 E-value=19 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+..-+++|++++|.+++|++
T Consensus 96 ~~~~i~~lg~~~g~~~~A~~ 115 (260)
T 2q8p_A 96 MQKSITQLGDQFNRKAQAKE 115 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHH
Confidence 34446789999998888764
No 16
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=36.36 E-value=23 Score=25.56 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+..-++.|++++|.+++|++
T Consensus 97 ~~~~i~~lg~~~g~~~~A~~ 116 (255)
T 3md9_A 97 VAMKINAVATALHQTEKGQK 116 (255)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 44567899999999998864
No 17
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=34.60 E-value=36 Score=23.49 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=32.4
Q ss_pred eEEEeeCCCCCC---ChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeee
Q 033207 59 WLVVMEAPKGYP---PRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109 (125)
Q Consensus 59 WLVvMe~P~g~~---sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~ 109 (125)
|-|.|- +|.. .++++++.--+.+++++|.-++..+-+..---...|+||
T Consensus 3 ~~I~~~--~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~g 54 (148)
T 3n4h_A 3 YTCWSQ--RIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIA 54 (148)
T ss_dssp EEEEEE--TTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEET
T ss_pred EEEEec--CCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEEC
Confidence 555544 4543 456789999999999999766665544444344556665
No 18
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=34.56 E-value=22 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+..-+++|++++|.+++|++
T Consensus 98 ~~~~i~~lg~~~g~~~~A~~ 117 (256)
T 2r7a_A 98 MYANIRQLAKTLQVPEQGDA 117 (256)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 33457789999998888764
No 19
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=34.50 E-value=14 Score=27.23 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=11.4
Q ss_pred eeeeeeeeehhhc
Q 033207 105 YYAFGCKFLKILL 117 (125)
Q Consensus 105 yfgF~c~I~Ee~S 117 (125)
.|||+|.|-|+.+
T Consensus 40 ~~~~qCVI~e~~~ 52 (121)
T 2l6m_A 40 DFGTKCVIEEVKS 52 (121)
T ss_dssp CEEEEEEEEECCC
T ss_pred HhCCeEEEEehhh
Confidence 6999999988877
No 20
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=34.39 E-value=17 Score=26.66 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCHHHhhc
Q 033207 78 GYVKTLASALGCEEDAKK 95 (125)
Q Consensus 78 ~Yv~TLAkVLGSeeEAkk 95 (125)
--++.|++++|.+++|++
T Consensus 106 ~~i~~lg~~~g~e~~A~~ 123 (279)
T 3g9q_A 106 EQLKEFAKMTGTEDKAEK 123 (279)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 457899999999988754
No 21
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=33.48 E-value=24 Score=25.63 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCHHHhhc
Q 033207 78 GYVKTLASALGCEEDAKK 95 (125)
Q Consensus 78 ~Yv~TLAkVLGSeeEAkk 95 (125)
.-+++|++++|.+++|++
T Consensus 106 ~~i~~lg~~~g~~~~A~~ 123 (266)
T 1efd_N 106 KSLTEMADLLNLQSAAET 123 (266)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 447789999999888764
No 22
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=33.27 E-value=44 Score=24.49 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHhCCHHHhhc
Q 033207 71 PRDEIVNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 71 sr~emId~Yv~TLAkVLGSeeEAkk 95 (125)
+.+++. .-++.|++++|.+++|++
T Consensus 118 ~~~~~~-~~i~~lg~~~g~~~~A~~ 141 (296)
T 3lhs_A 118 DYKQNI-NSFKTIAKALNKEKEGEK 141 (296)
T ss_dssp CHHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred CHHHHH-HHHHHHHHHhCCHHHHHH
Confidence 556655 356789999999988753
No 23
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=32.61 E-value=24 Score=26.14 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhCCHHHhhc
Q 033207 75 IVNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 75 mId~Yv~TLAkVLGSeeEAkk 95 (125)
=+.--++.|++++|.+++|++
T Consensus 131 ~~~~~i~~lg~~~g~~~~A~~ 151 (296)
T 2chu_A 131 SFENNVLSVAKLYGLEKEALE 151 (296)
T ss_dssp HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHH
Confidence 345557889999999988864
No 24
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=32.12 E-value=18 Score=26.02 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+..-+++|++++|.+++|++
T Consensus 94 ~~~~i~~lg~~lg~~~~A~~ 113 (245)
T 1n2z_A 94 IANALRQLAPWSPQPDKAEQ 113 (245)
T ss_dssp HHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 44456778888888877764
No 25
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=31.88 E-value=42 Score=22.61 Aligned_cols=52 Identities=6% Similarity=-0.020 Sum_probs=33.6
Q ss_pred eeEEEeeCCCCCCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeee
Q 033207 58 HWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109 (125)
Q Consensus 58 HWLVvMe~P~g~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~ 109 (125)
|+.|-+........++++++..-+.+++++|--++...-+-..--...++|+
T Consensus 3 ~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~ 54 (131)
T 2aal_A 3 LLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLE 54 (131)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEEC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccC
Confidence 4555555433334588999999999999999665554444433335566666
No 26
>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*
Probab=31.77 E-value=26 Score=25.68 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+.--++.|++++|.+++|++
T Consensus 123 ~~~~~~~lg~~~g~~~~A~~ 142 (297)
T 3be6_A 123 APEIYRKLAELTGTQSQLAI 142 (297)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHH
Confidence 34456789999999888763
No 27
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=31.57 E-value=29 Score=25.74 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhCCHHHhhc
Q 033207 74 EIVNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 74 emId~Yv~TLAkVLGSeeEAkk 95 (125)
+-+...+++|++++|.+++|++
T Consensus 130 ~~~~~~i~~lg~~~g~~~~A~~ 151 (303)
T 3gfv_A 130 ESFKSDAETIGKIFDKEDKVKD 151 (303)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHH
Confidence 3345567899999999988754
No 28
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=31.29 E-value=27 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+..-+++|++++|.+++|++
T Consensus 97 ~~~~i~~lg~~~g~~~~A~~ 116 (283)
T 2r79_A 97 LESNLKKLGDWLGVPQRAEA 116 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 34456788888888877753
No 29
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=30.03 E-value=28 Score=26.14 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCHHHhhc
Q 033207 76 VNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkk 95 (125)
+.--++.|++++|.+|+|++
T Consensus 130 ~~~~i~~lg~~lg~e~~A~~ 149 (311)
T 2wi8_A 130 WKENMMLLAQLTGKEKKAKK 149 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 34456788999998887753
No 30
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=28.98 E-value=82 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHhhcc
Q 033207 73 DEIVNGYVKTLASALGCEEDAKKS 96 (125)
Q Consensus 73 ~emId~Yv~TLAkVLGSeeEAkkk 96 (125)
-+-+..-++.|++++|.+++|++-
T Consensus 114 ~~~~~~~~~~lg~~~g~~~~A~~~ 137 (292)
T 3tef_A 114 WESTQQQWRNLGKVFAIEPAVEAK 137 (292)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHH
Confidence 344556678899999999988753
No 31
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=28.20 E-value=32 Score=25.80 Aligned_cols=21 Identities=5% Similarity=0.098 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCHHHhhc
Q 033207 75 IVNGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 75 mId~Yv~TLAkVLGSeeEAkk 95 (125)
-+.--+++|++++|.+++|++
T Consensus 139 ~~~~~i~~lg~~lg~e~~A~~ 159 (326)
T 3psh_A 139 GLKQGIELIAEVFEKKQQGDE 159 (326)
T ss_dssp HHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHH
Confidence 345668899999999998864
No 32
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=28.18 E-value=31 Score=26.28 Aligned_cols=21 Identities=5% Similarity=0.037 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCHHHhhcc
Q 033207 76 VNGYVKTLASALGCEEDAKKS 96 (125)
Q Consensus 76 Id~Yv~TLAkVLGSeeEAkkk 96 (125)
+.--++.|++++|.+++|++-
T Consensus 151 ~~~~i~~lg~~lg~e~~A~~l 171 (335)
T 4hn9_A 151 LEECITLVGKITNNAGRAEAL 171 (335)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 455678899999998888643
No 33
>3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A
Probab=27.85 E-value=33 Score=25.28 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCHHHhhc
Q 033207 78 GYVKTLASALGCEEDAKK 95 (125)
Q Consensus 78 ~Yv~TLAkVLGSeeEAkk 95 (125)
.-++.|++++|.+++|++
T Consensus 118 ~~i~~lg~~~g~~~~A~~ 135 (298)
T 3mwf_A 118 DTTKLMGKALGKEKEAED 135 (298)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 446677888887776653
No 34
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=27.59 E-value=33 Score=25.59 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCHHHhhc
Q 033207 78 GYVKTLASALGCEEDAKK 95 (125)
Q Consensus 78 ~Yv~TLAkVLGSeeEAkk 95 (125)
--++++++++|.+++|++
T Consensus 125 ~~i~~lg~~lg~~~~A~~ 142 (305)
T 3r5t_A 125 SLAQQLGLATGLEEQAER 142 (305)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 357899999999988864
No 35
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=27.20 E-value=34 Score=25.36 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCHHHhhcc
Q 033207 79 YVKTLASALGCEEDAKKS 96 (125)
Q Consensus 79 Yv~TLAkVLGSeeEAkkk 96 (125)
.++.|++++|.+++|++-
T Consensus 133 ~i~~lg~~~g~e~~A~~l 150 (303)
T 3tny_A 133 NFKFYAKALNKEKEGQKV 150 (303)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHH
Confidence 468899999999888753
No 36
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.74 E-value=39 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=21.2
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHHhC
Q 033207 63 MEAPKGYPPRDEIVNGYVKTLASALG 88 (125)
Q Consensus 63 Me~P~g~~sr~emId~Yv~TLAkVLG 88 (125)
||.|....|-.|.++.|++.+.+..+
T Consensus 1 ~~~~~~~~t~~~~~~~~l~~~~~~~~ 26 (112)
T 2key_A 1 MNNPSDFKSFHDFVASYMKTYSRRLE 26 (112)
T ss_dssp CCCTTCCCSHHHHHHHHTHHHHTTSC
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhC
Confidence 78888889999999999988764433
No 37
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=26.63 E-value=27 Score=25.56 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=13.5
Q ss_pred HHHHHHHhCCHHHhhc
Q 033207 80 VKTLASALGCEEDAKK 95 (125)
Q Consensus 80 v~TLAkVLGSeeEAkk 95 (125)
++.|++++|.+++|++
T Consensus 114 ~~~lg~~~g~~~~A~~ 129 (277)
T 4b8y_A 114 QEMLGKIVGKEDKVKA 129 (277)
T ss_dssp HHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 4999999999988754
No 38
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=26.39 E-value=66 Score=21.42 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHHHHhCC-HHHhhccceEEeeceeeeeeeeeehhhccccCCCC
Q 033207 69 YPPRDEIVNGYVKTLASALGC-EEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQ 124 (125)
Q Consensus 69 ~~sr~emId~Yv~TLAkVLGS-eeEAkkkIY~vSt~~yfgF~c~I~Ee~Slk~lP~~ 124 (125)
.-.|++++....+.|++.||- .++---.|..+. ...||||-..-++ .++|.|+
T Consensus 72 ~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~~-~~~wg~gG~~~~~--~~~~~~~ 125 (128)
T 1mww_A 72 EGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQP-AHCWGFRGMTGDE--ARDLDYD 125 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEEC-GGGEEETTEETTT--CC-----
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhEEEEEEECC-HHHeeECCEEHHH--HhccCCc
Confidence 456677899999999999995 444334444444 4578988655332 4555554
No 39
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=25.99 E-value=37 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCHHHhhc
Q 033207 77 NGYVKTLASALGCEEDAKK 95 (125)
Q Consensus 77 d~Yv~TLAkVLGSeeEAkk 95 (125)
..-++.|++++|.+++|++
T Consensus 153 ~~~i~~lg~~lg~~~~A~~ 171 (326)
T 3tlk_A 153 QSLLTQLGEITGHEKQAAE 171 (326)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 3457899999999988864
No 40
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=25.87 E-value=38 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCHHHhhcc
Q 033207 78 GYVKTLASALGCEEDAKKS 96 (125)
Q Consensus 78 ~Yv~TLAkVLGSeeEAkkk 96 (125)
--++.+++++|.+++|++-
T Consensus 131 ~~i~~lg~~~g~~~~A~~~ 149 (308)
T 4h59_A 131 DMIKIDSKALGMEKEGDEL 149 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 3467899999999888753
No 41
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=25.06 E-value=29 Score=26.00 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCCcceeEEEeeCCC----C--CCChHHHHHHHHHHHHHHhC----------CHHHhhccc
Q 033207 53 GCDYKHWLVVMEAPK----G--YPPRDEIVNGYVKTLASALG----------CEEDAKKSI 97 (125)
Q Consensus 53 Gcdy~HWLVvMe~P~----g--~~sr~emId~Yv~TLAkVLG----------SeeEAkkkI 97 (125)
..-|.|+.|.=+--. | --+-+|+|..|++.|++-|. +.||+.+-+
T Consensus 55 d~~~~Hi~I~E~~k~l~ig~~~fedLDElI~~yv~pm~~~~~~~~~h~kf~~s~~~~e~~L 115 (178)
T 2xp1_A 55 SDVFVHMKIEEHSEHYTCSNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFNSPEDAEKLL 115 (178)
T ss_dssp TTEEEEEEEEECSSCEEETTEEESSHHHHHHHTHHHHHHHHHHHHHSTTBCSCTTTSHHHH
T ss_pred CCcEEEEEEEECCCEEEECCcEECCHHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHH
Confidence 445788877543211 2 46999999999999998877 666665443
No 42
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=24.18 E-value=30 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=10.3
Q ss_pred CCCcccCCCCcceeEEEeeCCCC
Q 033207 46 RLPSLLEGCDYKHWLVVMEAPKG 68 (125)
Q Consensus 46 ~~p~L~~Gcdy~HWLVvMe~P~g 68 (125)
.++++++- .+++++|+|.|
T Consensus 3 ~~~ilyed----~~~lvvnKP~G 21 (189)
T 2oml_A 3 RRKPENQP----TRVILFNKPYD 21 (189)
T ss_dssp -----CCC----CCEEEEEECTT
T ss_pred ccccccCC----CeEEEEECCCC
Confidence 46677763 34678899998
No 43
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=23.83 E-value=32 Score=25.80 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=18.0
Q ss_pred eCCCC---CCChHHHHHHHHHHHHHHhC
Q 033207 64 EAPKG---YPPRDEIVNGYVKTLASALG 88 (125)
Q Consensus 64 e~P~g---~~sr~emId~Yv~TLAkVLG 88 (125)
..|+| .||-+|+|.+|++-- ++|
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K--~~g 39 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRK--AAG 39 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHH--HHT
T ss_pred CCCCcceeCCCHHHHHHHHHHHH--hcC
Confidence 35666 799999999999874 445
No 44
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=23.64 E-value=74 Score=23.66 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred hccceEEeeceeeeeeeeeehhhc
Q 033207 94 KKSIYSVSTKYYYAFGCKFLKILL 117 (125)
Q Consensus 94 kkkIY~vSt~~yfgF~c~I~Ee~S 117 (125)
+-+|..+-|++-||++|+..-+.+
T Consensus 26 ~G~iva~pTdtvygL~~da~n~~A 49 (206)
T 1k7j_A 26 KGGVIVYPTDSGYALGCKIEDKNA 49 (206)
T ss_dssp TTCCEEEEETTEEEEEEETTCHHH
T ss_pred CCCEEEEECCCEEEEEEeCCCHHH
Confidence 347999999999999999754443
No 45
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=23.59 E-value=60 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHHHHHHhCC
Q 033207 68 GYPPRDEIVNGYVKTLASALGC 89 (125)
Q Consensus 68 g~~sr~emId~Yv~TLAkVLGS 89 (125)
|-++++++.+...+.+++++|-
T Consensus 1 ~~~~~~~i~~~l~~ii~~~l~~ 22 (82)
T 2qnw_A 1 GSSDDRPLLERVKDVVADQLGV 22 (82)
T ss_dssp --CCSHHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHHHHHHHCC
Confidence 3578999999999999999984
No 46
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=22.85 E-value=48 Score=19.95 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=13.8
Q ss_pred eCCCCCCChHHHHHHHHH
Q 033207 64 EAPKGYPPRDEIVNGYVK 81 (125)
Q Consensus 64 e~P~g~~sr~emId~Yv~ 81 (125)
+.|++..+.||+..+|.+
T Consensus 6 ~~Pg~~a~pEela~Y~~~ 23 (37)
T 1f8p_A 6 DNPGEDAPAEDLARYYSA 23 (37)
T ss_dssp CCCCSSCTTTTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 346678999999887754
No 47
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=22.29 E-value=40 Score=25.04 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=18.0
Q ss_pred eCCCC---CCChHHHHHHHHHHHHHHhC
Q 033207 64 EAPKG---YPPRDEIVNGYVKTLASALG 88 (125)
Q Consensus 64 e~P~g---~~sr~emId~Yv~TLAkVLG 88 (125)
..|.| .||-+|+|.+|++- |+.|
T Consensus 16 ~lPpGfRF~PTDeELv~~YL~~--K~~g 41 (171)
T 1ut7_A 16 SLPPGFRFYPTDEELMVQYLCR--KAAG 41 (171)
T ss_dssp CCCTTEEECCCHHHHHHHTHHH--HHTT
T ss_pred CCCCcceeCCChHHHHHHHHHH--HhcC
Confidence 45666 79999999999975 4555
No 48
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.94 E-value=1.3e+02 Score=19.50 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=28.9
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHHhCCHHHhhccceEEeeceeeeee
Q 033207 63 MEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109 (125)
Q Consensus 63 Me~P~g~~sr~emId~Yv~TLAkVLGSeeEAkkkIY~vSt~~yfgF~ 109 (125)
+..+.... ++++++..-+.|++++|--++-.+-.. .-...+.||
T Consensus 8 ~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~--~~~~~~~~~ 51 (115)
T 2xcz_A 8 ASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSL--QCGVPMTFS 51 (115)
T ss_dssp ESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEE--ECSCCCCBT
T ss_pred ecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEE--ECCCceEEC
Confidence 33333344 999999999999999997777544332 233344444
Done!