BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033208
MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ
AFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS
VEESE

High Scoring Gene Products

Symbol, full name Information P value
AT2G26500 protein from Arabidopsis thaliana 3.4e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033208
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2066291 - symbol:AT2G26500 "AT2G26500" species...   324  3.4e-29   1


>TAIR|locus:2066291 [details] [associations]
            symbol:AT2G26500 "AT2G26500" species:3702 "Arabidopsis
            thaliana" [GO:0009496 "plastoquinol--plastocyanin reductase
            activity" evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0009512 "cytochrome b6f complex" evidence=IEA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009657 "plastid organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            HAMAP:MF_00396 InterPro:IPR012595 Pfam:PF08041 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009535 EMBL:AC002505 GO:GO:0009512
            EMBL:AF375459 EMBL:AY060541 EMBL:AY088737 IPI:IPI00530642
            PIR:T00983 RefSeq:NP_565623.1 RefSeq:NP_850079.1 UniGene:At.22912
            ProteinModelPortal:O48717 SMR:O48717 STRING:O48717 PRIDE:O48717
            EnsemblPlants:AT2G26500.1 EnsemblPlants:AT2G26500.2 GeneID:817191
            KEGG:ath:AT2G26500 TAIR:At2g26500 HOGENOM:HOG000240439
            InParanoid:O48717 OMA:TEQCFAN PhylomeDB:O48717
            ProtClustDB:CLSN2688447 ArrayExpress:O48717 Genevestigator:O48717
            Uniprot:O48717
        Length = 125

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 71/127 (55%), Positives = 92/127 (72%)

Query:     1 MATASA-TLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNS-LTSLGMPVST 58
             MATA+A  +   T     + +G  +++  +KVSYITGLNS+GGLKAQN+ + S+G P+ T
Sbjct:     1 MATAAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCT 60

Query:    59 EQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
             EQ FA +V S+    KG   +GG L++TCNA  EIF+IAAIMN L L+GVAVGFVLLRIE
Sbjct:    61 EQCFANVVMSL----KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 116

Query:   119 ASVEESE 125
              SVEE+E
Sbjct:   117 TSVEEAE 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.127   0.337    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  10 22  0.38    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  115 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.18u 0.14s 16.32t   Elapsed:  00:00:01
  Total cpu time:  16.18u 0.14s 16.32t   Elapsed:  00:00:01
  Start:  Fri May 10 18:25:16 2013   End:  Fri May 10 18:25:17 2013

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