BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033208
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q90|M Chain M, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 39
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 97 AAIMNGLVLIGVAVGFVLLRIEASVEE 123
A M G+ L+G+A+GFVLLR+E+ VEE
Sbjct: 10 ALTMVGMTLVGLAIGFVLLRVESLVEE 36
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 44 KAQNSLTSLGM--PVSTEQAFAKIVSSVRAPGKG 75
KA+ + SLG P+ EQAFA V ++ GKG
Sbjct: 93 KAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKG 126
>pdb|4IXT|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXT|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXW|A Chain A, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IXW|B Chain B, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IY1|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
pdb|4IY1|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
Length = 254
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 13 FISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTS 51
F A A A +RR+S + +IT SFG K ++ S
Sbjct: 109 FALANAVASQMKRRKSGHIIFITSAASFGPWKELSTYAS 147
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 14 ISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVST----EQAFAKIVSSV 69
I A +CR +KV + L +AQN LT+ G+P+++ E A K V+SV
Sbjct: 334 IIANGITKACRELE-LKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 14 ISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVST----EQAFAKIVSSV 69
I A +CR +KV + L +AQN LT+ G+P+++ E A K V+SV
Sbjct: 335 IIANGITKACRELE-LKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 393
>pdb|3HR0|A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric
Golgi Subunit 4
pdb|3HR0|B Chain B, Crystal Structure Of Homo Sapiens Conserved Oligomeric
Golgi Subunit 4
Length = 263
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 1 MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSL 52
MA A+LSP + S T S KV + N GGL+ L SL
Sbjct: 138 MAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSL 189
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 25 RRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVST----EQAFAKIVSSV 69
R +KV + L +AQN LT+ G+P+++ E A K V+SV
Sbjct: 345 RELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,731,122
Number of Sequences: 62578
Number of extensions: 86762
Number of successful extensions: 275
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 13
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)