BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033208
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea
           GN=petM PE=1 SV=1
          Length = 36

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 35/36 (97%)

Query: 88  NAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEE 123
           NAA+EIFRIAA+MNGL L+GVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36


>sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7, chloroplastic OS=Chlamydomonas
           reinhardtii GN=petM PE=1 SV=1
          Length = 99

 Score = 38.5 bits (88), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 68  SVRAPGKGEGQSGGVLTSTCNA-------ASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS 120
           S+R  G+    S GV T   N        A  I   A  M G+ L+G+A+GFVLLR+E+ 
Sbjct: 34  SLRTAGQKAAPSRGVATKAVNELAMIAGEAEFIAGTALTMVGMTLVGLAIGFVLLRVESL 93

Query: 121 VEESE 125
           VEE +
Sbjct: 94  VEEGK 98


>sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emiliania huxleyi GN=petM PE=3
           SV=1
          Length = 32

 Score = 33.9 bits (76), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 90  ASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
           A EIF +A +M  LVL G++VGF LL+I+
Sbjct: 2   AKEIFTVAGVMWALVLTGLSVGFGLLKIQ 30


>sp|Q8DJ15|PETM_THEEB Cytochrome b6-f complex subunit 7 OS=Thermosynechococcus elongatus
           (strain BP-1) GN=petM PE=3 SV=1
          Length = 33

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 90  ASEIFRIAAIMNGLVLIGVAVGFVLLRI 117
           A EIF  A I   LVL+G+  G++LLR+
Sbjct: 2   AEEIFNTAVITFTLVLVGLGAGYLLLRL 29


>sp|P48366|PETM_CYAPA Cytochrome b6-f complex subunit 7 OS=Cyanophora paradoxa GN=petM
           PE=3 SV=1
          Length = 33

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 92  EIFRIAAIMNGLVLIGVAVGFVLLRIEA 119
           +IF  A I   L LIG+++GFVLL+I+ 
Sbjct: 4   QIFNTAVICFTLTLIGLSLGFVLLKIQG 31


>sp|Q9H4B8|DPEP3_HUMAN Dipeptidase 3 OS=Homo sapiens GN=DPEP3 PE=2 SV=2
          Length = 488

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 12  TFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSV-- 69
           TF  +T  A S  + R    + ++GL SFG  K    L  LGM +    A   ++  V  
Sbjct: 222 TFTCSTPWAESSTKFRHHMYTNVSGLTSFGE-KVVEELNRLGMMIDLSYASDTLIRRVLE 280

Query: 70  --RAPGK-GEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASV 121
             +AP       +  V  +  N   +I ++     G+V++ +++G +   + A+V
Sbjct: 281 VSQAPVIFSHSAARAVCDNLLNVPDDILQLLKKNGGIVMVTLSMGVLQCNLLANV 335


>sp|Q2JS99|PETM_SYNJA Cytochrome b6-f complex subunit 7 OS=Synechococcus sp. (strain
           JA-3-3Ab) GN=petM PE=3 SV=1
          Length = 35

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 90  ASEIFRIAAIMNGLVLIGVAVGFVLLRI 117
           ASEIF IA +   L L+GVA+G+ +LRI
Sbjct: 2   ASEIFTIAGLSIVLTLVGVALGYGILRI 29


>sp|Q6NXA8|CE024_DANRE UPF0461 protein C5orf24 homolog OS=Danio rerio GN=zgc:77058 PE=2
           SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 40  FGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPG--KGEGQSGGVLTSTCNAASEIFRI 96
            G  KA    TS G P+ T +A    VS  R PG  KG+ +   V  S+C+AA+  + I
Sbjct: 131 LGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKGQPRLSKVAYSSCSAAAFPYSI 189


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,022,417
Number of Sequences: 539616
Number of extensions: 1190786
Number of successful extensions: 3660
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3643
Number of HSP's gapped (non-prelim): 23
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)