Query 033208
Match_columns 125
No_of_seqs 45 out of 47
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_M Cytochrome B6F complex 99.6 6.2E-16 2.1E-20 96.5 2.8 36 89-124 2-37 (39)
2 1vf5_F Protein PET M; photosyn 99.5 2.9E-15 1E-19 91.6 2.9 34 90-123 2-35 (35)
3 2k1e_A Water soluble analogue 32.6 35 0.0012 22.3 2.9 36 88-123 64-99 (103)
4 3eff_K Voltage-gated potassium 24.4 65 0.0022 21.8 3.1 32 87-118 63-94 (139)
5 2ih3_C Voltage-gated potassium 23.7 59 0.002 21.9 2.8 36 87-122 84-119 (122)
6 2knc_B Integrin beta-3; transm 22.4 56 0.0019 21.7 2.4 26 86-111 3-29 (79)
7 2k9j_B Integrin beta-3; transm 21.0 94 0.0032 18.5 3.0 25 86-110 2-27 (43)
8 4f4s_A ATP synthase subunit 9, 19.4 1.3E+02 0.0043 20.3 3.7 28 88-115 42-73 (76)
9 2a9h_A Voltage-gated potassium 17.2 89 0.0031 22.2 2.7 32 88-119 108-139 (155)
10 3pjs_K KCSA, voltage-gated pot 15.9 59 0.002 22.9 1.5 33 87-119 90-122 (166)
No 1
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=99.58 E-value=6.2e-16 Score=96.48 Aligned_cols=36 Identities=50% Similarity=0.725 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhheeehhhhcc
Q 033208 89 AASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEES 124 (125)
Q Consensus 89 ~agEIf~iA~im~~LtLVGlavGFvLLrvea~veE~ 124 (125)
+++|||++|+|||+|||||+++||+|||||+++||+
T Consensus 2 ~~~EIf~~A~i~~~L~LvGla~Gf~LLkiqg~~ee~ 37 (39)
T 1q90_M 2 EAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEEG 37 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhc
Confidence 689999999999999999999999999999999997
No 2
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=99.53 E-value=2.9e-15 Score=91.58 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhheeehhhhc
Q 033208 90 ASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEE 123 (125)
Q Consensus 90 agEIf~iA~im~~LtLVGlavGFvLLrvea~veE 123 (125)
++|||++|+|||+|||||+++||+|||||+.+||
T Consensus 2 ~~EIf~~A~i~~~LvLvGla~Gf~LLkiqg~~~E 35 (35)
T 1vf5_F 2 TEEMLYAALLSFGLIFVGWGLGVLLLKIQGAEKE 35 (35)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhheeeccccC
Confidence 6899999999999999999999999999999887
No 3
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=32.65 E-value=35 Score=22.26 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=28.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhheeehhhhc
Q 033208 88 NAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEE 123 (125)
Q Consensus 88 ~~agEIf~iA~im~~LtLVGlavGFvLLrvea~veE 123 (125)
+..|.+|.+.-+.+++.++++.++.+.-.+....+|
T Consensus 64 t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 64 TEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp SSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999998877666554443
No 4
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=24.43 E-value=65 Score=21.77 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhheee
Q 033208 87 CNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118 (125)
Q Consensus 87 c~~agEIf~iA~im~~LtLVGlavGFvLLrve 118 (125)
.+..|.+|.+..+++|+.++++.++.+.-.+.
T Consensus 63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999988765443
No 5
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=23.69 E-value=59 Score=21.89 Aligned_cols=36 Identities=6% Similarity=0.167 Sum_probs=29.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhheeehhhh
Q 033208 87 CNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVE 122 (125)
Q Consensus 87 c~~agEIf~iA~im~~LtLVGlavGFvLLrvea~ve 122 (125)
-+..|.++.+..+.+|+.++++.+|.+.-.+.+..+
T Consensus 84 ~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 84 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999887665554443
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.43 E-value=56 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=16.1
Q ss_pred ccchhhhHHHH-HHHHHHHHHHHHhhh
Q 033208 86 TCNAASEIFRI-AAIMNGLVLIGVAVG 111 (125)
Q Consensus 86 ~c~~agEIf~i-A~im~~LtLVGlavG 111 (125)
.|...-.|..| .+++-+++|+|+++=
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllll 29 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 46444444444 467777888888763
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=21.00 E-value=94 Score=18.51 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=15.1
Q ss_pred ccchhhhHHHHH-HHHHHHHHHHHhh
Q 033208 86 TCNAASEIFRIA-AIMNGLVLIGVAV 110 (125)
Q Consensus 86 ~c~~agEIf~iA-~im~~LtLVGlav 110 (125)
.|...-.+..|. +++-+.+|+|+++
T Consensus 2 ~Cp~~~n~~~Iv~gvi~~ivliGl~l 27 (43)
T 2k9j_B 2 ESPKGPDILVVLLSVMGAILLIGLAA 27 (43)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEeehHHHHHHHHHHHHHHH
Confidence 355555566554 5666677777754
No 8
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=19.38 E-value=1.3e+02 Score=20.35 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.0
Q ss_pred chhhhHHHHHHHHHHHH----HHHHhhhhhhh
Q 033208 88 NAASEIFRIAAIMNGLV----LIGVAVGFVLL 115 (125)
Q Consensus 88 ~~agEIf~iA~im~~Lt----LVGlavGFvLL 115 (125)
+..+++|+.+.+-++|+ |.++.+.|.||
T Consensus 42 ~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lll 73 (76)
T 4f4s_A 42 SIKDTVFPMAILGFALSEATGLFCLMVSFLLL 73 (76)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999998888776 88888888876
No 9
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=17.23 E-value=89 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=26.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhheeeh
Q 033208 88 NAASEIFRIAAIMNGLVLIGVAVGFVLLRIEA 119 (125)
Q Consensus 88 ~~agEIf~iA~im~~LtLVGlavGFvLLrvea 119 (125)
+..|.+|.+..+.+|+.++++.+|.+.-.+..
T Consensus 108 t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 108 TLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998877654433
No 10
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=15.91 E-value=59 Score=22.91 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=27.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhheeeh
Q 033208 87 CNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEA 119 (125)
Q Consensus 87 c~~agEIf~iA~im~~LtLVGlavGFvLLrvea 119 (125)
-+..|.+|.+..+++|+.++++.++.+.-.+..
T Consensus 90 ~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 90 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999988766553
Done!