BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033212
MLIQNQKSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTA
KMLDTISEEEKDANASDARASTPRTFSSSCVSTTSSSASASAVVAGSKNFLRGVQIQRSF
SIFEN

High Scoring Gene Products

Symbol, full name Information P value
AT1G30260 protein from Arabidopsis thaliana 1.5e-10
GALT2
AGP galactosyltransferase 2 		protein from Arabidopsis thaliana 2.7e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033212
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009782 - symbol:AT1G30260 "AT1G30260" species...   148  1.5e-10   1
TAIR|locus:2133094 - symbol:GALT2 "AGP galactosyltransfer...   129  2.7e-07   1


>TAIR|locus:2009782 [details] [associations]
            symbol:AT1G30260 "AT1G30260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009735 EMBL:AC073506 EMBL:AY057696 EMBL:AY116947
            IPI:IPI00548505 PIR:H86426 RefSeq:NP_564352.1 UniGene:At.26235
            IntAct:Q9C754 EnsemblPlants:AT1G30260.1 GeneID:839906
            KEGG:ath:AT1G30260 TAIR:At1g30260 eggNOG:NOG247899
            HOGENOM:HOG000152185 InParanoid:Q9C754 OMA:RLARFIT PhylomeDB:Q9C754
            ProtClustDB:CLSN2688104 Genevestigator:Q9C754 Uniprot:Q9C754
        Length = 97

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query:    34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKD 72
             MA SR+ RF+ EVAPPQFV+VMR RTAK+LDTI EEE++
Sbjct:     1 MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEERE 39


>TAIR|locus:2133094 [details] [associations]
            symbol:GALT2 "AGP galactosyltransferase 2" species:3702
            "Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
            [GO:0016757 "transferase activity, transferring glycosyl groups"
            evidence=ISS] [GO:0016758 "transferase activity, transferring
            hexosyl groups" evidence=ISS] [GO:0010405 "arabinogalactan protein
            metabolic process" evidence=IDA] [GO:0012505 "endomembrane system"
            evidence=IDA] [GO:0018258 "protein O-linked glycosylation via
            hydroxyproline" evidence=IDA] [GO:0035250
            "UDP-galactosyltransferase activity" evidence=IDA]
            InterPro:IPR001079 InterPro:IPR002659 Pfam:PF00337 Pfam:PF01762
            PROSITE:PS51304 SMART:SM00276 SMART:SM00908 GO:GO:0016021
            GO:GO:0005794 EMBL:CP002687 GO:GO:0030246 GO:GO:0006486
            GO:GO:0008378 Gene3D:2.60.120.200 InterPro:IPR008985
            InterPro:IPR013320 SUPFAM:SSF49899 PANTHER:PTHR11214
            IPI:IPI00529900 RefSeq:NP_193838.2 UniGene:At.32667
            ProteinModelPortal:F4JIK9 EnsemblPlants:AT4G21060.1 GeneID:827853
            KEGG:ath:AT4G21060 OMA:YSHSWKF ArrayExpress:F4JIK9 Uniprot:F4JIK9
        Length = 741

 Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 29/39 (74%), Positives = 31/39 (79%)

Query:    34 MANSRITRFVMEVAPPQFVSVMR-HRTAKM-LDTISEEE 70
             MA SR+ RFV EVAPPQFV+VMR HR AK  LDTI EEE
Sbjct:     1 MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.129   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       102   0.00091  102 3  10 22  0.49    29
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.58u 0.10s 15.68t   Elapsed:  00:00:00
  Total cpu time:  15.58u 0.10s 15.68t   Elapsed:  00:00:00
  Start:  Fri May 10 18:26:40 2013   End:  Fri May 10 18:26:40 2013

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