BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033212
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O35099|M3K5_MOUSE Mitogen-activated protein kinase kinase kinase 5 OS=Mus musculus
            GN=Map3k5 PE=1 SV=3
          Length = 1380

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 17   HKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANAS 76
            H +    +  L+   +K   + IT  V E+ P  F       TA   D   E+E +  +S
Sbjct: 1152 HNIKPHWMFALDSIIRKAVQTAITILVPELRP-HFSLASESDTADPEDLDVEDEHEELSS 1210

Query: 77   DARASTPRTFSSSCVSTTSSSASASAVVAGSKNFLRGVQIQ 117
            +     P+  +   V+T+  S  +S V   S+N  R + +Q
Sbjct: 1211 NQTVRRPQAITEDAVATSGVSTLSSTVSHDSQNAHRSLNVQ 1251


>sp|Q30TD9|PYRB_SULDN Aspartate carbamoyltransferase OS=Sulfurimonas denitrificans
           (strain ATCC 33889 / DSM 1251) GN=pyrB PE=3 SV=1
          Length = 291

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 30  KKKKMANSRI---TRFVMEV---APPQFVSVMRHRTAKMLDTISEE 69
           K  ++ANS I   +RF MEV   APPQF+     RT   L+ I +E
Sbjct: 157 KNSRVANSNIELLSRFKMEVILVAPPQFLPQSDLRTTHYLEDIIDE 202


>sp|Q9VR07|INE_DROME Sodium- and chloride-dependent GABA transporter ine OS=Drosophila
           melanogaster GN=ine PE=1 SV=1
          Length = 943

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 28  NQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEE--EKDANASDARASTPRT 85
           N+   ++ N+   + V+  APP  ++ +RH  +++ D+ +E   E D  A   R+S+ R 
Sbjct: 4   NKDVSQVLNTTPDQVVINRAPPTGLAPLRH--SQLSDSGAESCYEGDEQARLIRSSSSRA 61

Query: 86  FSSSCVSTTSSSASASAVVAGSKNF 110
                +  T  +   S  VAG   F
Sbjct: 62  HKFIIIPATPGTPPGSGAVAGPLPF 86


>sp|Q887D0|HOPM1_PSESM Effector protein hopM1 OS=Pseudomonas syringae pv. tomato (strain
           DC3000) GN=hopM1 PE=1 SV=1
          Length = 712

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 12  SSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRH-------RTAKMLD 64
           +SV  H  L  +V  L   +  +   +    ++  A PQF+S M H        + K+ D
Sbjct: 272 ASVAAHTQLDNVVSDLVTARNTVGGWKGAGPIVAAAVPQFLSSMTHLGYVRLSTSDKLRD 331

Query: 65  TISEEEKDAN 74
           TI E   DAN
Sbjct: 332 TIPETSSDAN 341


>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220
            PE=2 SV=2
          Length = 1672

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 44   MEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVSTTSSSASASA 102
            ME   P FVS + H +++      +++KD N  D R S  +  S+   S  +  ASA A
Sbjct: 1342 MEKPVPPFVSQLMHSSSE------DKKKDGNDQDGRKSVSKRGSTKSGSDNTDYASADA 1394


>sp|Q4ZX82|HOPM1_PSEU2 Effector protein hopM1 OS=Pseudomonas syringae pv. syringae (strain
           B728a) GN=hopM1 PE=3 SV=1
          Length = 718

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 12  SSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRH----RTA---KMLD 64
           S+V  H  +  ++ KLN  +  +   +    ++  A PQF+  M H    RTA    M D
Sbjct: 272 SAVAAHTQMDALIDKLNVDRSSVGGWKGIGPIVAAAVPQFMVSMLHLGYIRTATSDAMKD 331

Query: 65  TISEEEKDA 73
            + E+  DA
Sbjct: 332 AVPEKSADA 340


>sp|P34703|SPT6H_CAEEL Suppressor of Ty 6 homolog OS=Caenorhabditis elegans GN=emb-5 PE=1
            SV=1
          Length = 1521

 Score = 29.6 bits (65), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 22   LIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEE 70
            L ++K   KKK  AN+R+ R +   A P F +V      KMLD +   E
Sbjct: 1277 LELMKSESKKKTEANTRVKRVI---AHPNFHNVSYEAATKMLDEMDWSE 1322


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.122    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,398,865
Number of Sequences: 539616
Number of extensions: 992568
Number of successful extensions: 7679
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6852
Number of HSP's gapped (non-prelim): 756
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)