Query 033212
Match_columns 125
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 18:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrn_A Transient receptor pote 22.0 16 0.00053 24.5 -0.4 13 59-71 50-62 (64)
2 1z56_A Ligase interacting fact 12.1 1.2E+02 0.0042 24.5 2.4 16 21-36 210-225 (246)
3 3h09_A IGA1 protease, immunogl 10.7 55 0.0019 31.1 -0.0 21 34-54 140-160 (989)
4 3syj_A Adhesion and penetratio 8.4 76 0.0026 30.2 -0.0 21 34-54 116-136 (1011)
5 1vsy_3 Proteasome activator BL 7.9 79 0.0027 21.6 -0.1 17 105-123 29-45 (76)
6 2kfe_A Meucin-24; alpha-helix, 6.8 3E+02 0.01 15.4 2.0 19 19-37 6-24 (26)
7 2i9f_A Nucleocapsid; assembly, 6.1 1.1E+02 0.0038 20.5 -0.1 19 26-44 16-34 (69)
8 3sze_A Serine protease ESPP; p 6.1 1.2E+02 0.004 28.8 0.0 17 34-50 102-118 (968)
9 3od8_A Poly [ADP-ribose] polym 5.4 2.1E+02 0.007 20.2 0.9 20 31-50 18-37 (116)
10 2wlv_A GAG polyprotein, HIV-2 5.4 1.6E+02 0.0055 22.1 0.4 11 62-72 68-78 (144)
No 1
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=22.00 E-value=16 Score=24.50 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.8
Q ss_pred ccccccchhhhhh
Q 033212 59 TAKMLDTISEEEK 71 (125)
Q Consensus 59 ~s~mLDTIaEEdr 71 (125)
..+.||+|+|||+
T Consensus 50 m~kll~~~~e~~~ 62 (64)
T 3hrn_A 50 LGRLLDGVAEDER 62 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhccccHhhc
Confidence 3478999999987
No 2
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=12.06 E-value=1.2e+02 Score=24.51 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.8
Q ss_pred HHHHHhhchhhHHhhh
Q 033212 21 SLIVLKLNQKKKKMAN 36 (125)
Q Consensus 21 ~~~~~~~~~~~~~MA~ 36 (125)
.-.+--||.||+|..+
T Consensus 210 ~~fv~LLNEKK~KIR~ 225 (246)
T 1z56_A 210 AMMVTLLNEKKKKIRE 225 (246)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 7778889999999876
No 3
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}
Probab=10.68 E-value=55 Score=31.05 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.6
Q ss_pred hhhhhcccceeeecCCceeee
Q 033212 34 MANSRITRFVMEVAPPQFVSV 54 (125)
Q Consensus 34 MA~sr~ARf~mEVAPPq~ISv 54 (125)
-.--|+-+|++||||..+...
T Consensus 140 yh~PRL~K~VTEvaP~~~t~~ 160 (989)
T 3h09_A 140 YYMPRLDKFVTEVAPIEASTA 160 (989)
T ss_dssp CBCCEESSCCCSSCCCCBCCS
T ss_pred ccCcccccceeeecccccccC
Confidence 345789999999999976654
No 4
>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Probab=8.37 E-value=76 Score=30.19 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=16.5
Q ss_pred hhhhhcccceeeecCCceeee
Q 033212 34 MANSRITRFVMEVAPPQFVSV 54 (125)
Q Consensus 34 MA~sr~ARf~mEVAPPq~ISv 54 (125)
-.-.|+-+|++||||.....-
T Consensus 116 fh~PRLnK~VTEvaP~~~t~~ 136 (1011)
T 3syj_A 116 YHNPRLHKFVTEAAPIDMTSN 136 (1011)
T ss_dssp CBCCEESSCCCSSCCCCBCCC
T ss_pred cccccccceEEeecccccccc
Confidence 345789999999999876543
No 5
>1vsy_3 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_E
Probab=7.92 E-value=79 Score=21.58 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.2
Q ss_pred ccccccccccccccccccc
Q 033212 105 AGSKNFLRGVQIQRSFSIF 123 (125)
Q Consensus 105 ~ns~~f~~~v~~~rs~s~~ 123 (125)
.||++|-|.+ .|+|..+
T Consensus 29 p~Sr~faR~r--prt~~~~ 45 (76)
T 1vsy_3 29 PSSRWFSRSV--RPEFPIE 45 (76)
T ss_dssp TTSTTCCCSS--CCSSCHH
T ss_pred ccccchhccC--CCCCChh
Confidence 5899999998 8998765
No 6
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=6.83 E-value=3e+02 Score=15.45 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=14.8
Q ss_pred HHHHHHHhhchhhHHhhhh
Q 033212 19 LLSLIVLKLNQKKKKMANS 37 (125)
Q Consensus 19 ~~~~~~~~~~~~~~~MA~s 37 (125)
++.-|--||+|-|.||-++
T Consensus 6 i~~kiK~kl~~akdK~k~~ 24 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKNS 24 (26)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4556677899999999765
No 7
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=6.12 E-value=1.1e+02 Score=20.47 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.0
Q ss_pred hhchhhHHhhhhhccccee
Q 033212 26 KLNQKKKKMANSRITRFVM 44 (125)
Q Consensus 26 ~~~~~~~~MA~sr~ARf~m 44 (125)
.|||....--.|-+-||||
T Consensus 16 dlnqqeratlssnvqrffm 34 (69)
T 2i9f_A 16 DLNQQERATLSSNVQRFFM 34 (69)
T ss_dssp GCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhheee
Confidence 5788888888888999987
No 8
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}
Probab=6.10 E-value=1.2e+02 Score=28.78 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=13.9
Q ss_pred hhhhhcccceeeecCCc
Q 033212 34 MANSRITRFVMEVAPPQ 50 (125)
Q Consensus 34 MA~sr~ARf~mEVAPPq 50 (125)
-.-.|+-+|++||||.-
T Consensus 102 fh~pRLnK~VTEvaP~~ 118 (968)
T 3sze_A 102 FAVSRLDKFVVETRGAT 118 (968)
T ss_dssp EEEEEESSCCCSCCCCC
T ss_pred ccccccceeEEeccccc
Confidence 34468889999999986
No 9
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=5.39 E-value=2.1e+02 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=11.4
Q ss_pred hHHhhhhhcccceeeecCCc
Q 033212 31 KKKMANSRITRFVMEVAPPQ 50 (125)
Q Consensus 31 ~~~MA~sr~ARf~mEVAPPq 50 (125)
-.-||.+.--+|.+|+||.-
T Consensus 18 ~~~m~~~~~~~y~vEyAkS~ 37 (116)
T 3od8_A 18 GSHMAESSDKLYRVEYAKSG 37 (116)
T ss_dssp -------CCCSEEEEECSSS
T ss_pred hhhhhhccCCCEEEEEeccC
Confidence 45689998899999999953
No 10
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=5.37 E-value=1.6e+02 Score=22.07 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=8.1
Q ss_pred cccchhhhhhc
Q 033212 62 MLDTISEEEKD 72 (125)
Q Consensus 62 mLDTIaEEdrE 72 (125)
.-|||.||-.|
T Consensus 68 lkd~INEeaae 78 (144)
T 2wlv_A 68 IREIINEEAAE 78 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45899998665
Done!