Query 033212
Match_columns 125
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 18:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033212.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033212hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2od4a1 d.58.4.20 (A:1-100) Hy 12.9 1.4E+02 0.01 18.3 4.3 58 7-66 14-71 (100)
2 d1irxa2 c.26.1.1 (A:3-319) Cla 8.3 23 0.0017 22.5 -1.0 14 26-39 270-283 (317)
3 d2i9fa1 d.254.1.1 (A:50-105) A 7.1 43 0.0031 20.2 -0.1 19 26-44 8-26 (56)
4 d1ilea3 c.26.1.1 (A:1-197,A:38 6.9 59 0.0043 22.8 0.6 13 27-39 396-408 (452)
5 d1x93a1 a.43.1.3 (A:31-73) Unc 6.7 75 0.0054 18.2 0.9 10 28-37 13-22 (43)
6 d1utga_ a.101.1.1 (A:) Uterogl 5.6 53 0.0038 20.4 -0.3 15 59-73 41-55 (70)
7 d1whqa_ d.50.1.1 (A:) ATP-depe 5.3 1.5E+02 0.011 18.0 1.8 29 41-69 37-76 (99)
8 d2d5ba2 c.26.1.1 (A:1-348) Met 5.0 46 0.0033 22.2 -1.0 13 27-39 291-303 (348)
9 d2hkva1 a.213.1.2 (A:1-147) Hy 4.9 73 0.0053 19.0 0.0 19 59-77 19-37 (147)
10 d1ng2a2 b.34.2.1 (A:215-332) p 4.6 1.2E+02 0.0088 18.2 0.9 27 62-88 65-91 (118)
No 1
>d2od4a1 d.58.4.20 (A:1-100) Hypothetical protein GOS_3280838 {environmental samples}
Probab=12.88 E-value=1.4e+02 Score=18.34 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=45.2
Q ss_pred cCcCCchhHHHHHHHHHHHhhchhhHHhhhhhcccceeeecCCceeeeeeccccccccch
Q 033212 7 KSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTI 66 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~MA~sr~ARf~mEVAPPq~ISv~RrR~s~mLDTI 66 (125)
+-|||+..-+.-+++.+- -+-..+-++.-.+.++++.+++-+...+.+-+.+.--|-|
T Consensus 14 ~itf~sel~~~m~~~~~~--~~~~~~~~~~G~l~~~~~~iSen~~~~I~~fpdK~tAdk~ 71 (100)
T d2od4a1 14 SITAQSKLQFDMTVTYFE--NVWSPKVISLGAISAEFVQSNENSGMYIIHYPDKQTAISV 71 (100)
T ss_dssp EEECSSHHHHHHHHHHHH--HTHHHHHHHHTCSEEEEEEEETTEEEEEEEESSHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHH--HhcchhhhhCCCeEEEEEEecCCeEEEEEEeCCHHHHHHH
Confidence 458999998888877653 3345667889999999999999999999998876543333
No 2
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.31 E-value=23 Score=22.47 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=3.1
Q ss_pred hhchhhHHhhhhhc
Q 033212 26 KLNQKKKKMANSRI 39 (125)
Q Consensus 26 ~~~~~~~~MA~sr~ 39 (125)
.||.+.+||++|+.
T Consensus 270 ~l~ge~~KMSkrkG 283 (317)
T d1irxa2 270 GIKGQKGKMSGSKG 283 (317)
T ss_dssp EESCC---------
T ss_pred EECCccccccCCCC
Confidence 46667779999985
No 3
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=7.08 E-value=43 Score=20.18 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=15.8
Q ss_pred hhchhhHHhhhhhccccee
Q 033212 26 KLNQKKKKMANSRITRFVM 44 (125)
Q Consensus 26 ~~~~~~~~MA~sr~ARf~m 44 (125)
.|||....--.|-+-||||
T Consensus 8 dlnqqeratlssnvqrffm 26 (56)
T d2i9fa1 8 DLNQQERATLSSNVQRFFM 26 (56)
T ss_dssp GCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhheeE
Confidence 5788888888888889887
No 4
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=6.88 E-value=59 Score=22.81 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=10.1
Q ss_pred hchhhHHhhhhhc
Q 033212 27 LNQKKKKMANSRI 39 (125)
Q Consensus 27 ~~~~~~~MA~sr~ 39 (125)
|+...+||++|+.
T Consensus 396 L~~~G~KMSKS~g 408 (452)
T d1ilea3 396 LDEKGQKMSKSKG 408 (452)
T ss_dssp ECTTSSCCCTTTT
T ss_pred ECCCCcccCCCCC
Confidence 5667789999973
No 5
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=6.73 E-value=75 Score=18.20 Aligned_cols=10 Identities=60% Similarity=0.584 Sum_probs=7.4
Q ss_pred chhhHHhhhh
Q 033212 28 NQKKKKMANS 37 (125)
Q Consensus 28 ~~~~~~MA~s 37 (125)
-||-+||||-
T Consensus 13 yqklekmane 22 (43)
T d1x93a1 13 YQKLEKMANE 22 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3677889884
No 6
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.63 E-value=53 Score=20.36 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=11.7
Q ss_pred ccccccchhhhhhcc
Q 033212 59 TAKMLDTISEEEKDA 73 (125)
Q Consensus 59 ~s~mLDTIaEEdrE~ 73 (125)
.++..||.+|||++.
T Consensus 41 lK~cvDtLt~edK~~ 55 (70)
T d1utga_ 41 MKKVLDSLPQTTREN 55 (70)
T ss_dssp HHHHHTTSCHHHHHH
T ss_pred HHHHHhcCCHHHHHH
Confidence 356889999999864
No 7
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.25 E-value=1.5e+02 Score=17.98 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=15.4
Q ss_pred cceeeecCC--ceeeeeecccc---------ccccchhhh
Q 033212 41 RFVMEVAPP--QFVSVMRHRTA---------KMLDTISEE 69 (125)
Q Consensus 41 Rf~mEVAPP--q~ISv~RrR~s---------~mLDTIaEE 69 (125)
+|.+||-=. .|+..-..+.+ .+|+.+...
T Consensus 37 ~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~ 76 (99)
T d1whqa_ 37 KFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp EEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHc
Confidence 577776532 34444333332 378887664
No 8
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=4.96 E-value=46 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=9.5
Q ss_pred hchhhHHhhhhhc
Q 033212 27 LNQKKKKMANSRI 39 (125)
Q Consensus 27 ~~~~~~~MA~sr~ 39 (125)
|+.+.+||++|+.
T Consensus 291 l~~~G~KMSKS~G 303 (348)
T d2d5ba2 291 LGPDGRKMSKTLG 303 (348)
T ss_dssp ECTTSSCCCTTTT
T ss_pred EcccCCCCcCCCC
Confidence 3556668999985
No 9
>d2hkva1 a.213.1.2 (A:1-147) Hypothetical protein ExigDRAFT_2445 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=4.93 E-value=73 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=13.4
Q ss_pred ccccccchhhhhhccccCC
Q 033212 59 TAKMLDTISEEEKDANASD 77 (125)
Q Consensus 59 ~s~mLDTIaEEdrE~~a~D 77 (125)
..+.|+.|.||+-+....+
T Consensus 19 t~~~l~~l~~e~~~~kp~~ 37 (147)
T d2hkva1 19 TRDLIRLIQPEDWDKRPIS 37 (147)
T ss_dssp HHHHHHHCCGGGTTCCSST
T ss_pred HHHHHHhCCHHHcCCCCCC
Confidence 4567888888877766543
No 10
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.56 E-value=1.2e+02 Score=18.18 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=13.0
Q ss_pred cccchhhhhhccccCCCCCCCCCcccc
Q 033212 62 MLDTISEEEKDANASDARASTPRTFSS 88 (125)
Q Consensus 62 mLDTIaEEdrE~~a~Ds~~s~P~~~~~ 88 (125)
.|+-|.++...........++|...+.
T Consensus 65 yv~~~~~~~~~~~~~~~~~~~p~~~~~ 91 (118)
T d1ng2a2 65 YLQKSGQDVSQAQRQIKRGAPPRRSSI 91 (118)
T ss_dssp GEEETTSCHHHHHHTCCSCCCCCGGGC
T ss_pred hEEECCCcccccccccccCCCCCcCcc
Confidence 445555544444444444555554433
Done!