BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033213
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 78/152 (51%), Gaps = 29/152 (19%)
Query: 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA 61
SL G++E VEIKA A F K HHVS A P +Q DL EG+WG GS++F Y
Sbjct: 14 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62 N---------------------------GNLLDQYKSFCCFFQVTPK--GEGSFVTWTLK 92
+ G+L+ +YKSF QVTPK G GS V W L+
Sbjct: 74 HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLE 133
Query: 93 YEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 124
YEK +E V P +LQ CV+V+K++ L+ +
Sbjct: 134 YEKISEEVAHPETLLQFCVEVSKEIDEHLLAE 165
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 2 SLTGQVEAGVEIKAPASTVREYFCSKLHH-VSSACPDKVQSVDLLEGEWGKAGSVIFGRY 60
+L G + ++K PA F + ++++VDL++ K ++ +
Sbjct: 2 TLKGALSVKFDVKCPADKFFSAFVEDTNRPFEKNGKTEIEAVDLVK----KTXTI---QX 54
Query: 61 ANGNLLDQYKSFCCFFQVTP--KGEGSFVTWTLKYEKPNENVPEPAAMLQLCV 111
+ + +K+ VTP G+GS V WT +EK ++++ +P +++ V
Sbjct: 55 SGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESV 107
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR++ G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRFSYGSV 224
>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At1g53520 (Atfap3)
Length = 217
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 27/107 (25%)
Query: 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQS-----VDLLEGEWGKAGSVIFGRYANG- 63
GV++ A V E S L + D++Q V + + + K+ ++ R +G
Sbjct: 52 GVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGK 111
Query: 64 ---NLLDQ----------------YKSFCCFFQVTPKGEGSFV--TW 89
+ LD+ +FCC FQ P +GS + TW
Sbjct: 112 TFWDALDEAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTW 158
>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
Length = 554
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 219
>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
Length = 554
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 219
>pdb|1TYU|A Chain A, Structure Of Tailspike-Protein
pdb|1TYV|A Chain A, Structure Of Tailspike-Protein
pdb|1TYW|A Chain A, Structure Of Tailspike-Protein
pdb|1TYX|A Chain A, Title Of Tailspike-Protein
Length = 554
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 219
>pdb|2VFP|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V349l
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|2VFO|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125l
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|1TSP|A Chain A, Crystal Structure Of P22 Tailspike Protein: Interdigitated
Subunits In A Thermostable Trimer
pdb|3TH0|A Chain A, P22 Tailspike Complexed With S.Paratyphi O Antigen
Octasaccharide
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
Length = 666
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 288 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 331
>pdb|2VFQ|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V450a
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|2VFN|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125a
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|2VFM|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666)
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65
+FC + + S D + + + L G+WGK VI GR + G++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSV 224
>pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g
Length = 554
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGN 64
+FC + + S D + + + L G+WGK VI GR + G+
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGS 218
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGN 64
+FC + + S D + + + L G+WGK VI GR + G+
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGS 218
>pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQ 40
E K P + +FC ++H+ ++CP K Q
Sbjct: 110 ECKLPPQPKKCHFCQSINHMVASCPLKAQ 138
>pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQ 40
E K P + +FC ++H+ ++CP K Q
Sbjct: 112 ECKLPPQPKKCHFCQSINHMVASCPLKAQ 140
>pdb|2CQF|A Chain A, Solution Structure Of The Zinc-Finger Domain In Lin-28
Length = 63
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAG 53
E K P + +FC + H+ ++CP K Q +G +G
Sbjct: 22 ECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGSGPSSG 63
>pdb|2LI8|A Chain A, The Solution Structure Of The Lin28-Znf Domains Bound To
Aggagau Of Pre-Let-7 Mirna
Length = 74
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47
E K P + +FC + H+ ++CP K Q +G
Sbjct: 39 ECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,025,208
Number of Sequences: 62578
Number of extensions: 162274
Number of successful extensions: 410
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 24
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)