Query 033213
Match_columns 125
No_of_seqs 116 out of 462
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 3.2E-42 6.9E-47 249.5 12.5 123 2-124 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.7E-28 3.7E-33 176.2 15.7 119 5-124 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.2 1.9E-09 4.1E-14 73.7 14.3 112 6-121 2-139 (140)
4 cd07819 SRPBCC_2 Ligand-bindin 98.7 1.3E-06 2.9E-11 59.8 14.0 90 6-97 3-114 (140)
5 PF10604 Polyketide_cyc2: Poly 98.7 2.1E-06 4.6E-11 58.5 13.9 87 5-95 2-108 (139)
6 cd07824 SRPBCC_6 Ligand-bindin 98.4 6.3E-06 1.4E-10 58.1 11.3 90 6-97 2-113 (146)
7 cd08866 SRPBCC_11 Ligand-bindi 98.4 2.4E-05 5.2E-10 54.2 12.9 108 8-120 2-141 (144)
8 cd08865 SRPBCC_10 Ligand-bindi 98.4 1.5E-05 3.2E-10 54.1 11.6 86 8-95 2-108 (140)
9 cd07820 SRPBCC_3 Ligand-bindin 98.4 4.9E-06 1.1E-10 58.0 9.3 89 7-97 1-113 (137)
10 cd07812 SRPBCC START/RHO_alpha 98.3 3E-05 6.6E-10 51.0 12.2 90 8-99 2-114 (141)
11 cd05018 CoxG Carbon monoxide d 98.3 2.3E-05 4.9E-10 53.9 10.9 91 6-98 2-115 (144)
12 cd08862 SRPBCC_Smu440-like Lig 98.2 7.1E-05 1.5E-09 51.1 12.6 88 6-96 2-108 (138)
13 cd07813 COQ10p_like Coenzyme Q 98.2 4.6E-05 1E-09 52.8 10.7 106 8-120 2-134 (138)
14 cd08860 TcmN_ARO-CYC_like N-te 98.0 0.00017 3.6E-09 51.6 11.7 93 5-99 1-116 (146)
15 cd07818 SRPBCC_1 Ligand-bindin 97.9 0.00046 1E-08 48.1 11.9 90 6-98 3-119 (150)
16 PF03364 Polyketide_cyc: Polyk 97.9 0.0005 1.1E-08 46.8 11.3 89 13-106 1-113 (130)
17 cd08861 OtcD1_ARO-CYC_like N-t 97.8 0.0005 1.1E-08 47.4 10.9 88 7-98 1-113 (142)
18 cd07814 SRPBCC_CalC_Aha1-like 97.8 0.00032 6.9E-09 47.8 9.7 84 7-97 2-112 (139)
19 cd07823 SRPBCC_5 Ligand-bindin 97.8 0.00026 5.6E-09 49.8 8.9 89 8-98 2-116 (146)
20 cd07822 SRPBCC_4 Ligand-bindin 97.7 0.0029 6.3E-08 42.8 12.5 85 7-96 2-112 (141)
21 cd07825 SRPBCC_7 Ligand-bindin 97.6 0.0024 5.1E-08 44.1 11.6 113 7-121 2-143 (144)
22 cd07817 SRPBCC_8 Ligand-bindin 97.5 0.0046 1E-07 42.0 11.4 89 7-98 2-108 (139)
23 COG3427 Carbon monoxide dehydr 97.4 0.001 2.2E-08 48.1 7.6 113 6-122 2-144 (146)
24 cd08900 SRPBCC_CalC_Aha1-like_ 97.1 0.032 7E-07 38.8 12.8 110 7-121 2-141 (143)
25 cd08897 SRPBCC_CalC_Aha1-like_ 97.1 0.03 6.5E-07 38.6 12.3 111 6-122 1-132 (133)
26 PF06240 COXG: Carbon monoxide 96.9 0.0066 1.4E-07 42.7 7.8 85 10-97 2-110 (140)
27 cd08893 SRPBCC_CalC_Aha1-like_ 96.9 0.024 5.2E-07 38.4 10.4 31 6-37 1-31 (136)
28 cd07826 SRPBCC_CalC_Aha1-like_ 96.9 0.016 3.4E-07 40.6 9.6 114 7-122 2-141 (142)
29 cd08898 SRPBCC_CalC_Aha1-like_ 96.9 0.01 2.2E-07 40.7 8.4 31 6-37 2-32 (145)
30 cd08899 SRPBCC_CalC_Aha1-like_ 96.8 0.025 5.3E-07 40.4 10.0 104 6-122 12-136 (157)
31 PRK10724 hypothetical protein; 96.8 0.036 7.9E-07 40.2 10.9 84 6-97 16-125 (158)
32 cd08896 SRPBCC_CalC_Aha1-like_ 96.6 0.13 2.8E-06 35.9 12.8 29 7-36 2-30 (146)
33 cd08894 SRPBCC_CalC_Aha1-like_ 96.3 0.053 1.1E-06 37.6 9.0 28 7-35 2-29 (139)
34 cd08895 SRPBCC_CalC_Aha1-like_ 95.2 0.68 1.5E-05 32.2 12.4 29 7-36 2-30 (146)
35 COG5637 Predicted integral mem 94.9 0.21 4.4E-06 37.8 7.7 88 5-98 70-179 (217)
36 cd08891 SRPBCC_CalC Ligand-bin 94.7 0.83 1.8E-05 31.9 10.3 20 7-26 2-21 (149)
37 cd08892 SRPBCC_Aha1 Putative h 94.4 1 2.2E-05 30.7 10.5 29 7-36 2-30 (126)
38 cd08901 SRPBCC_CalC_Aha1-like_ 94.1 0.41 8.9E-06 33.1 7.5 28 7-35 2-29 (136)
39 cd08876 START_1 Uncharacterize 92.5 3.1 6.7E-05 30.2 11.9 110 6-120 42-193 (195)
40 COG3832 Uncharacterized conser 91.0 4.2 9.2E-05 28.8 11.1 33 3-36 6-38 (149)
41 PF11485 DUF3211: Protein of u 88.7 0.41 9E-06 34.3 2.6 40 6-47 2-41 (136)
42 PTZ00220 Activator of HSP-90 A 85.0 10 0.00022 26.1 8.4 20 14-34 2-21 (132)
43 PF10698 DUF2505: Protein of u 84.3 13 0.00028 26.6 8.6 26 71-96 103-128 (159)
44 PF11687 DUF3284: Domain of un 82.5 13 0.00028 25.6 7.6 89 9-97 3-104 (120)
45 cd08873 START_STARD14_15-like 81.1 24 0.00051 27.4 12.9 116 6-124 78-235 (235)
46 PF08327 AHSA1: Activator of H 81.0 13 0.00028 24.3 9.4 20 14-34 1-20 (124)
47 cd08905 START_STARD1-like Chol 77.3 28 0.0006 26.0 10.2 114 7-122 51-207 (209)
48 COG2867 Oligoketide cyclase/li 68.8 42 0.00091 24.4 7.7 89 7-98 4-114 (146)
49 cd08906 START_STARD3-like Chol 58.5 13 0.00028 27.9 3.3 41 6-47 50-90 (209)
50 cd08868 START_STARD1_3_like Ch 55.7 80 0.0017 23.2 12.7 40 7-47 50-89 (208)
51 cd08913 START_STARD14-like Lip 55.3 22 0.00047 27.6 4.1 40 6-47 82-121 (240)
52 PF08982 DUF1857: Domain of un 55.0 52 0.0011 23.7 5.8 45 14-61 17-61 (149)
53 cd08863 SRPBCC_DUF1857 DUF1857 50.8 90 0.002 22.4 11.2 48 15-65 17-64 (141)
54 cd08914 START_STARD15-like Lip 50.5 27 0.00058 27.2 4.0 40 6-47 79-118 (236)
55 PF08004 DUF1699: Protein of u 44.9 10 0.00022 26.9 0.8 11 39-49 66-77 (131)
56 PRK05889 putative acetyl-CoA c 40.0 73 0.0016 19.4 4.1 41 51-91 9-55 (71)
57 PRK08225 acetyl-CoA carboxylas 35.1 55 0.0012 19.8 2.9 40 52-91 9-54 (70)
58 COG5470 Uncharacterized conser 35.0 35 0.00076 23.1 2.1 55 4-61 3-61 (96)
59 PF11979 DUF3480: Domain of un 32.2 2.4E+02 0.0052 23.5 6.9 113 6-121 176-307 (356)
60 PF14275 DUF4362: Domain of un 31.9 42 0.00091 22.6 2.1 16 50-65 28-44 (98)
61 COG1951 TtdA Tartrate dehydrat 31.6 1.2E+02 0.0027 24.5 5.1 82 20-116 97-178 (297)
62 PF08868 YugN: YugN-like famil 29.3 47 0.001 23.6 2.1 27 95-121 105-131 (132)
63 cd08903 START_STARD5-like Lipi 28.6 2.5E+02 0.0053 20.8 11.6 40 7-47 48-88 (208)
64 cd08874 START_STARD9-like C-te 28.3 2.6E+02 0.0056 21.0 12.2 93 7-102 47-182 (205)
65 cd00177 START Lipid-binding ST 27.9 2.1E+02 0.0045 19.8 12.4 89 7-98 41-167 (193)
66 PRK06748 hypothetical protein; 27.0 1.2E+02 0.0027 19.6 3.7 41 51-91 11-58 (83)
67 PRK06549 acetyl-CoA carboxylas 26.2 1.1E+02 0.0025 21.4 3.7 41 51-91 68-114 (130)
68 COG4894 Uncharacterized conser 25.6 2.7E+02 0.0059 20.4 6.3 69 41-119 68-155 (159)
69 COG4276 Uncharacterized conser 25.2 2.7E+02 0.0059 20.2 8.6 91 5-98 2-120 (153)
70 PLN02226 2-oxoglutarate dehydr 22.1 1.9E+02 0.0042 24.8 4.8 46 46-91 99-150 (463)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=3.2e-42 Score=249.50 Aligned_cols=123 Identities=34% Similarity=0.602 Sum_probs=114.6
Q ss_pred CcceeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee--------------------
Q 033213 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-------------------- 61 (125)
Q Consensus 2 ~~~g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-------------------- 61 (125)
+++|+++.|+++++||+|||++|++.++++||++|+.|+|||++|||||..||||+|+|.
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 467999999999999999999999889999999999999999999998444599999997
Q ss_pred -------CCcccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhccC
Q 033213 62 -------NGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 124 (125)
Q Consensus 62 -------eGd~~~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~~~~p~~~~~~~~~~~K~ie~yLl~n 124 (125)
|||+++.|++|..+++++|+++ ||++|||++||+++++.|+|+++++++.+++|+||+|||+|
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999877 69999999999999999999999999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.96 E-value=1.7e-28 Score=176.23 Aligned_cols=119 Identities=30% Similarity=0.509 Sum_probs=108.7
Q ss_pred eeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-----------------------
Q 033213 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA----------------------- 61 (125)
Q Consensus 5 g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~----------------------- 61 (125)
|+++.|+++++||+++|+++++..+.+|+.+|..|++|++++|+ |++||||.|+|.
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 68999999999999999999987766777666689999999999 699999999996
Q ss_pred ----CCcccC-ceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhccC
Q 033213 62 ----NGNLLD-QYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 124 (125)
Q Consensus 62 ----eGd~~~-~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~~~~p~~~~~~~~~~~K~ie~yLl~n 124 (125)
||+++. .|++|.++++++|.++ +|+++|+++|++.+++.++|+.+++.+..+++++++|++.+
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 888875 7999999999999855 89999999999999999999999999999999999999753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.19 E-value=1.9e-09 Score=73.74 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=83.7
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEeeCCcc--------------------
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL-------------------- 65 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~eGd~-------------------- 65 (125)
.++.++++++|++++|+++.|. ..+|+++|. +++++++++++ ++|+++.+.+..|..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~-~~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~ 78 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDF-GGLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIV 78 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCc-CchhhhccC-cceEEeecCCC-CCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEec
Confidence 4678899999999999999985 577899996 88999998875 789998887752110
Q ss_pred --cCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCCh---HHHHHHHHHHHHHHHhhh
Q 033213 66 --LDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEP---AAMLQLCVDVTKDVATKL 121 (125)
Q Consensus 66 --~~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~~~~p---~~~~~~~~~~~K~ie~yL 121 (125)
...+.++..++++.|.++ ||.++|+.+|+..+. .+.+ ..+.+.....++.|.++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 79 EGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CCCCCcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 012345678889999877 899999999999976 3333 122455566667777665
No 4
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.72 E-value=1.3e-06 Score=59.84 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=65.3
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee---------------CCc-c----
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA---------------NGN-L---- 65 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~---------------eGd-~---- 65 (125)
+++..+.+++|++++|+.+.|. ..+|+++|. +.+++.++++.++.+....++.. +.. +
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~-~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADV-EAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTL 80 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhCh-hhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEE
Confidence 5788999999999999999984 789999996 88999877642232222222221 111 1
Q ss_pred cC--ceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 033213 66 LD--QYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 97 (125)
Q Consensus 66 ~~--~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~ 97 (125)
.+ ....+..+.++.|.++||.++|+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~ 114 (140)
T cd07819 81 VEGEGNRSQEGSYTLTPKGDGTRVTFDLTVELTV 114 (140)
T ss_pred ecccceeEEEEEEEEEECCCCEEEEEEEEEEecC
Confidence 01 255677889999988899999999999866
No 5
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.67 E-value=2.1e-06 Score=58.52 Aligned_cols=87 Identities=28% Similarity=0.418 Sum_probs=65.7
Q ss_pred eeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-------------C-Ccc-----
Q 033213 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-------------N-GNL----- 65 (125)
Q Consensus 5 g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-------------e-Gd~----- 65 (125)
.+++.++.+++||+++|..+.| ...+|++.|. +.++++++|+ ++|..+.+... . +..
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d-~~~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSD-PENWPRWWPG-VKSVELLSGG--GPGTERTVRVAGRGTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTT-TTGGGGTSTT-EEEEEEEEEC--STEEEEEEEECSCSEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEECCCHHHHHHHHhC-hhhhhhhhhc-eEEEEEcccc--ccceeEEEEeccccceeEEEEEecCCCcEEEEEE
Confidence 3788999999999999999998 5788999995 8899988844 34543444432 2 221
Q ss_pred -cCceeEEEEEEEEEecCCCeEEEEEEEEEc
Q 033213 66 -LDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 95 (125)
Q Consensus 66 -~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~ 95 (125)
...+..+..++++.|.++||.++|+.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 78 VPSGFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp ESSSSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred EecceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 123446788999999888999999999997
No 6
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.43 E-value=6.3e-06 Score=58.07 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=63.7
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEe-CCcCCcccEEEEEee---------CC-----cccCcee
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLE-GEWGKAGSVIFGRYA---------NG-----NLLDQYK 70 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~e-Gd~g~~GsIk~~~f~---------eG-----d~~~~yk 70 (125)
.++....+++|++++|+++.| ...+|+++|. +++++.++ |++.++|+.-+.+.. ++ +....+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD-~~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 79 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVD-AESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLE 79 (146)
T ss_pred cceEEEEecCCHHHHHHHHhC-hhhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEE
Confidence 467889999999999999998 5799999995 89999987 333467765433221 00 0000111
Q ss_pred -------EEEEEEEEEecCCCeEEEEEEEEEcCC
Q 033213 71 -------SFCCFFQVTPKGEGSFVTWTLKYEKPN 97 (125)
Q Consensus 71 -------s~~~~i~v~p~~~gs~~kwt~~Ye~~~ 97 (125)
....++.+.|.++||.++++.+++..+
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 80 VRASGDLEGVGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEEeeeEEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 224677888877799999999999865
No 7
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.37 E-value=2.4e-05 Score=54.24 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=70.8
Q ss_pred EEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCc-----ccEEEEE--ee----------C--Cc-c--
Q 033213 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKA-----GSVIFGR--YA----------N--GN-L-- 65 (125)
Q Consensus 8 ~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~-----GsIk~~~--f~----------e--Gd-~-- 65 (125)
+.++.+.+|++++|+++.|. ...|+++|. +++++++++++++. |....+. |. . .. +
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~-~~~~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 79 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDY-DNLAEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDF 79 (144)
T ss_pred eEEEEECCCHHHHHHHHhCh-hhHHhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEE
Confidence 57889999999999999985 677999996 89999998753221 1111111 11 0 11 1
Q ss_pred --c-CceeEEEEEEEEEecCC--CeEEEEEEEEEcCCCCCCChHHH-----HHHHHHHHHHHHhh
Q 033213 66 --L-DQYKSFCCFFQVTPKGE--GSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVATK 120 (125)
Q Consensus 66 --~-~~yks~~~~i~v~p~~~--gs~~kwt~~Ye~~~~~~~~p~~~-----~~~~~~~~K~ie~y 120 (125)
. ..++.|.++..+.|.++ ||.++|++++++.. ..|. .+ .+....+++++.+.
T Consensus 80 ~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p~--~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 80 EMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAPV--FLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred EEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 0 11367889999999765 79999999999876 3332 22 23345555555543
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.37 E-value=1.5e-05 Score=54.12 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=62.9
Q ss_pred EEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-CC---------------ccc-----
Q 033213 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NG---------------NLL----- 66 (125)
Q Consensus 8 ~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-eG---------------d~~----- 66 (125)
+.++.+++|++++|..+.|. ..+|++.|. +.+++.+.+...++|+...+... .| ...
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~-~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~ 79 (140)
T cd08865 2 EESIVIERPVEEVFAYLADF-ENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGS 79 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCc-cchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEec
Confidence 56788999999999999984 688999996 67888876543467777666543 11 000
Q ss_pred CceeEEEEEEEEEecCCCeEEEEEEEEEc
Q 033213 67 DQYKSFCCFFQVTPKGEGSFVTWTLKYEK 95 (125)
Q Consensus 67 ~~yks~~~~i~v~p~~~gs~~kwt~~Ye~ 95 (125)
...-.+..++++.|.++||.++|+.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~t~v~~~~~~~~ 108 (140)
T cd08865 80 SGPFPYEDTYTFEPVGGGTRVRYTAELEP 108 (140)
T ss_pred CCCcceEEEEEEEEcCCceEEEEEEEEcc
Confidence 01113577888889777999999999987
No 9
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.36 E-value=4.9e-06 Score=58.03 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=65.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcC--CcccEEEEEee----------------CCcc---
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG--KAGSVIFGRYA----------------NGNL--- 65 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g--~~GsIk~~~f~----------------eGd~--- 65 (125)
++.++.|.+|++++|+.+.| ...+|+++|+ +.++++++.+.+ .+|+.-.+... .|..
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d-~~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~~ 78 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSR-PDNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFVD 78 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcC-cchHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEEE
Confidence 46788999999999999998 5799999996 778998853322 34666665544 1221
Q ss_pred ---cCceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 033213 66 ---LDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 97 (125)
Q Consensus 66 ---~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~ 97 (125)
...+.++..+..+.|.++||.++++++|+...
T Consensus 79 ~~~~G~~~~w~h~~~f~~~~~gT~vt~~v~~~~p~ 113 (137)
T cd07820 79 EQVSGPFRSWRHTHRFEAIGGGTLMTDRVEYRLPL 113 (137)
T ss_pred EeccCCchhCEEEEEEEECCCceEEEEEEEEeCCc
Confidence 11355677788888877799999999999853
No 10
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.33 E-value=3e-05 Score=51.02 Aligned_cols=90 Identities=24% Similarity=0.457 Sum_probs=64.5
Q ss_pred EEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-------CCccc-------Cce----
Q 033213 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-------NGNLL-------DQY---- 69 (125)
Q Consensus 8 ~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-------eGd~~-------~~y---- 69 (125)
+.++.+++|++++|+++.| ...++++.|. +++++.+++.....|....+.+. .+.+. -.|
T Consensus 2 ~~~~~i~a~~~~v~~~l~d-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 79 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSD-PERWPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTG 79 (141)
T ss_pred cEEEEeCCCHHHHHHHHhC-hhhhhhhCcc-cceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEec
Confidence 5678899999999999998 5789999996 78888887654455555544431 00000 001
Q ss_pred ----eEEEEEEEEEecCC-CeEEEEEEEEEcCCCC
Q 033213 70 ----KSFCCFFQVTPKGE-GSFVTWTLKYEKPNEN 99 (125)
Q Consensus 70 ----ks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~ 99 (125)
..+..++++.+.++ ||.++|+.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 80 GGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred CCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 13566788999888 9999999999988754
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.27 E-value=2.3e-05 Score=53.90 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCc------ccE--E---EEEee---CCc-------
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKA------GSV--I---FGRYA---NGN------- 64 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~------GsI--k---~~~f~---eGd------- 64 (125)
+++.++.+++|++++|+++.| ...+|+++|. +++++.++++.-.. |-. + .+.+. ++.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D-~~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALND-PEVLARCIPG-CESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGE 79 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcC-HHHHHhhccc-hhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEE
Confidence 577899999999999999998 5789999995 77787776431011 110 0 12222 111
Q ss_pred --ccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 033213 65 --LLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 98 (125)
Q Consensus 65 --~~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~ 98 (125)
.......+..++++.|.++||.++|+.+|+..+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 80 GKGGAGFVKGTARVTLEPDGGGTRLTYTADAQVGGK 115 (144)
T ss_pred EcCCCceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence 1112457788999999866899999999997653
No 12
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.23 E-value=7.1e-05 Score=51.12 Aligned_cols=88 Identities=22% Similarity=0.171 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-------------CCccc-----C
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-------------NGNLL-----D 67 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-------------eGd~~-----~ 67 (125)
+++.++.+++|++++|+++.| ...+|+++|+ +++++++.+.+ ++|+-..++.. .+..+ .
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d-~~~~~~w~~~-~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~ 78 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTD-VENWPAWTPS-VETVRLEGPPP-AVGSSFKMKPPGLVRSTFTVTELRPGHSFTWTGPA 78 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHh-hhhcccccCc-ceEEEEecCCC-CCCcEEEEecCCCCceEEEEEEecCCCEEEEEecC
Confidence 577889999999999999998 5788999996 88999887642 56654444432 11100 0
Q ss_pred ceeEEEEEEEEEecC-CCeEEEEEEEEEcC
Q 033213 68 QYKSFCCFFQVTPKG-EGSFVTWTLKYEKP 96 (125)
Q Consensus 68 ~yks~~~~i~v~p~~-~gs~~kwt~~Ye~~ 96 (125)
.......++++.|.+ +||.++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 79 PGISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred CCEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 112345677888876 48999999888754
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.17 E-value=4.6e-05 Score=52.81 Aligned_cols=106 Identities=10% Similarity=0.101 Sum_probs=72.4
Q ss_pred EEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee---------------CCc-c----c-
Q 033213 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA---------------NGN-L----L- 66 (125)
Q Consensus 8 ~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~---------------eGd-~----~- 66 (125)
+..+.+++|++.+|..+.|- ...|+++|. +++++++++++ .+....+... .+. + .
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~-~~~~~~~p~-~~~~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADV-ERYPEFLPW-CTASRVLERDE--DELEAELTVGFGGIRESFTSRVTLVPPESIEAELVD 77 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHH-HhhhhhcCC-ccccEEEEcCC--CEEEEEEEEeeccccEEEEEEEEecCCCEEEEEecC
Confidence 56788999999999999984 788999996 89999998764 2222223222 010 0 0
Q ss_pred CceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCCCCChHHH-----HHHHHHHHHHHHhh
Q 033213 67 DQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVATK 120 (125)
Q Consensus 67 ~~yks~~~~i~v~p~~-~gs~~kwt~~Ye~~~~~~~~p~~~-----~~~~~~~~K~ie~y 120 (125)
..++.+..+.++.|.+ ++|.++|.++|++.+. -|..+ .+....+++++++.
T Consensus 78 g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~---l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 78 GPFKHLEGEWRFKPLGENACKVEFDLEFEFKSR---LLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred CChhhceeEEEEEECCCCCEEEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245678889999987 4899999999999863 23322 34445555555543
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=98.04 E-value=0.00017 Score=51.64 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=67.3
Q ss_pred eeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEe---------e-------CCc---c
Q 033213 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRY---------A-------NGN---L 65 (125)
Q Consensus 5 g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f---------~-------eGd---~ 65 (125)
|..+.++.|.+||+.+|..+.|. ...|.++|. ++++++++.++.+.|+--.+.+ . .+- .
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv-~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~ 78 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDI-ATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRA 78 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhh-hhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEE
Confidence 45688999999999999999985 688999996 8899998875445553221122 1 111 1
Q ss_pred ---cCc-eeEEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 033213 66 ---LDQ-YKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 99 (125)
Q Consensus 66 ---~~~-yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~~ 99 (125)
.+. +......-++.|.++||.+++..+|+-.++.
T Consensus 79 ~~~~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 79 RRVETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEecCCCcceeeeeEEEEECCCCEEEEEEEEEEECCCC
Confidence 112 6666777778898779999999999977544
No 15
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.91 E-value=0.00046 Score=48.13 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=60.8
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcce---EEE--EeCCcCCcccEEEEEeeC--Cc-------------c
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQS---VDL--LEGEWGKAGSVIFGRYAN--GN-------------L 65 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~s---ve~--~eGd~g~~GsIk~~~f~e--Gd-------------~ 65 (125)
+++..+.|.+|++++|+++.| ....|+++|.. .. ++. ..++ .++|+...|+... |. +
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D-~~~~~~W~p~~-~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~v~~~~p~~~i 79 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVND-LKNWPEWSPWE-KLDPDMKRTYSGPD-SGVGASYSWEGNDKVGEGEMEITESVPNERI 79 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhC-cccCcccCchh-hcCcceEEEecCCC-CCCCeEEEEecCCcccceEEEEEecCCCcEE
Confidence 578889999999999999998 47889998843 22 221 1233 2466554444321 00 0
Q ss_pred ------cCcee-EEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 033213 66 ------LDQYK-SFCCFFQVTPKGEGSFVTWTLKYEKPNE 98 (125)
Q Consensus 66 ------~~~yk-s~~~~i~v~p~~~gs~~kwt~~Ye~~~~ 98 (125)
...++ ....++.+.|.++||.++|+++|+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 80 EYELRFIKPFEATNDVEFTLEPVGGGTKVTWGMSGELPFP 119 (150)
T ss_pred EEEEEecCCccccceEEEEEEEcCCceEEEEEEEecCCch
Confidence 01232 5678999999877999999999997753
No 16
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.88 E-value=0.0005 Score=46.85 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=63.0
Q ss_pred eCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee----------------CCc----c-cCceeE
Q 033213 13 IKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA----------------NGN----L-LDQYKS 71 (125)
Q Consensus 13 ~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~----------------eGd----~-~~~yks 71 (125)
|++|++++|+++.|- ..+|.++|. ++++++++.+++ +..-.+... +.. . ...++.
T Consensus 1 V~ap~~~V~~~i~D~-e~~~~~~p~-~~~v~vl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
T PF03364_consen 1 VNAPPEEVWSVITDY-ENYPRFFPP-VKEVRVLERDGD--GMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQISGPFKS 76 (130)
T ss_dssp ESS-HHHHHHHHTTG-GGHHHHCTT-EEEEEEEEEECC--EEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSETTEEE
T ss_pred CCCCHHHHHHHHHHH-HHHHHhCCC-CceEEEEEeCCC--eEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecCCCchh
Confidence 579999999999984 799999996 889999988753 322233332 111 0 124788
Q ss_pred EEEEEEEEecCC---CeEEEEEEEEEcCCCCCCChHHH
Q 033213 72 FCCFFQVTPKGE---GSFVTWTLKYEKPNENVPEPAAM 106 (125)
Q Consensus 72 ~~~~i~v~p~~~---gs~~kwt~~Ye~~~~~~~~p~~~ 106 (125)
+..+-++.|.++ |+.++++++|+.... .+-|..+
T Consensus 77 ~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~ 113 (130)
T PF03364_consen 77 FEGSWRFEPLGGNEGGTRTRVTYDYEVDPP-GPLPGFL 113 (130)
T ss_dssp EEEEEEEEEETTECCEEEEEEEEEEEEETS-SSSHHHH
T ss_pred cEEEEEEEECCCCcCCCEEEEEEEEEEecC-cHhHHHH
Confidence 999999999887 898999999887433 2345554
No 17
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.84 E-value=0.0005 Score=47.42 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=59.0
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee----------------CCc-c---c
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA----------------NGN-L---L 66 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~----------------eGd-~---~ 66 (125)
++.++.+++|++++|+.+.|. ...|+..|. .+++.+++++ ....++.|... ++. + +
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~-~~~p~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADA-ERWPEFLPT--VHVERLELDG-GVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhH-HhhhccCCC--ceEEEEEEcC-CEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEE
Confidence 367889999999999999985 568888886 5666666432 11123322221 121 1 0
Q ss_pred ----CceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 033213 67 ----DQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 98 (125)
Q Consensus 67 ----~~yks~~~~i~v~p~~-~gs~~kwt~~Ye~~~~ 98 (125)
..+..+..+..+.|.+ ++|.++|+.+|+..+.
T Consensus 77 ~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 77 EEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred eeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 1234556778888977 4899999999998864
No 18
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=97.83 E-value=0.00032 Score=47.81 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=54.3
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCC-CcceEEEEeCCcCCcccEEEEEee------------------------
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPD-KVQSVDLLEGEWGKAGSVIFGRYA------------------------ 61 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~-~i~sve~~eGd~g~~GsIk~~~f~------------------------ 61 (125)
++.++.|++|++++|+++.| ...+|+++|. ...+++...| |+.+.+...
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d-~~~~~~w~~~~~~~~~~~~~G-----g~~~~~~~~~~g~~~~~~~~i~~~~~~~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALTD-PELLAQWFGPTTTAEMDLRVG-----GRWFFFMTGPDGEEGWVSGEVLEVEPPRRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcCC-HHHHHhhhCcCCceEEcccCC-----ceEEEEEECCCCCEEeccEEEEEEcCCCeEEEE
Confidence 57788999999999999997 4788999885 1222232222 333322110
Q ss_pred --CCcccCceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 033213 62 --NGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 97 (125)
Q Consensus 62 --eGd~~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~ 97 (125)
.++. ...-....++++.|.++||.++|+.+|...+
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~ 112 (139)
T cd07814 76 WAFSDE-TPGPETTVTVTLEETGGGTRLTLTHSGFPEE 112 (139)
T ss_pred ecccCC-CCCCceEEEEEEEECCCCEEEEEEEEccChH
Confidence 1110 0122456778888877899999999998864
No 19
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.79 E-value=0.00026 Score=49.78 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=57.0
Q ss_pred EEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcC------CcccEE-E----EEee--C--Cc-cc---Cc
Q 033213 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG------KAGSVI-F----GRYA--N--GN-LL---DQ 68 (125)
Q Consensus 8 ~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g------~~GsIk-~----~~f~--e--Gd-~~---~~ 68 (125)
+.++++.+|++++|+++.| ...++.++|. +++++.+.++.- +.|.++ . +++. + +. +. .+
T Consensus 2 ~~~~~v~a~pe~vw~~l~D-~~~~~~~~pg-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLD-IERVAPCLPG-ASLTEVEGDDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATG 79 (146)
T ss_pred CceEEecCCHHHHHHHhcC-HHHHHhcCCC-ceeccccCCCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEE
Confidence 5678899999999999998 5788899995 888876543210 122232 1 1121 1 11 10 00
Q ss_pred -------eeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 033213 69 -------YKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 98 (125)
Q Consensus 69 -------yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~ 98 (125)
--....++++.|.++||.++|+.+++-.+.
T Consensus 80 ~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 80 KDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGK 116 (146)
T ss_pred ecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeE
Confidence 003556778888556899999999986654
No 20
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.67 E-value=0.0029 Score=42.80 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=55.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEeeC-----------------Cccc---
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN-----------------GNLL--- 66 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~e-----------------Gd~~--- 66 (125)
++.++.+++|++++|+++.|. ..+|++.|. +..++... . ++|+...+.+.. +.-+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~-~~~~~w~~~-~~~~~~~~--~-~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~ 76 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDF-PSYPEWNPF-VRSATGLS--L-ALGARLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWR 76 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcc-ccccccChh-heeEeccc--c-CCCCEEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEE
Confidence 577899999999999999984 688999985 55555431 2 455555554420 1100
Q ss_pred -----CceeEEEEEEEEEec-CCCeEEEEEEEEEcC
Q 033213 67 -----DQYKSFCCFFQVTPK-GEGSFVTWTLKYEKP 96 (125)
Q Consensus 67 -----~~yks~~~~i~v~p~-~~gs~~kwt~~Ye~~ 96 (125)
...-....++.+.|. ++||.++|+..|...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 77 GGLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred ecCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 001124567788897 458999998877643
No 21
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.62 E-value=0.0024 Score=44.10 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=67.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCc-CCcccEEEEEee----------------CCccc---
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEW-GKAGSVIFGRYA----------------NGNLL--- 66 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~-g~~GsIk~~~f~----------------eGd~~--- 66 (125)
++.++.+++|++++|+++.|. ..+|++.|... ......|+. -++|+...+... .+..+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~-~~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~~l~~~ 79 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADP-RRHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENRLIAWR 79 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCc-cccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCCEEEEE
Confidence 578899999999999999984 78899988532 222223321 256665544432 01000
Q ss_pred -----CceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCC--CCC-hHHHHHHHHHHHHHHHhhh
Q 033213 67 -----DQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNEN--VPE-PAAMLQLCVDVTKDVATKL 121 (125)
Q Consensus 67 -----~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~--~~~-p~~~~~~~~~~~K~ie~yL 121 (125)
........++.+.|-++ +|.++++..|...+.. .++ ...........+..+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 80 PGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred ccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 00012345677788664 7999999988876542 111 1223444556667777765
No 22
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.47 E-value=0.0046 Score=42.03 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=61.0
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcC-----Cc-ccEEEEEee-----CCccc------Cce
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG-----KA-GSVIFGRYA-----NGNLL------DQY 69 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g-----~~-GsIk~~~f~-----eGd~~------~~y 69 (125)
++..+.+++|++++|+++.| ...+|++.|. +++++++.|... .+ |.-+.|... .+..+ ..+
T Consensus 2 v~~~i~I~ap~e~V~~~~~D-~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~~~~ 79 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRD-FENLPRFMSH-VESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVEGAD 79 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhC-hhhhHHHhhh-hcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECCCCC
Confidence 57889999999999999998 5789999996 788888765210 11 222222211 22100 112
Q ss_pred eEEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 033213 70 KSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 98 (125)
Q Consensus 70 ks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~ 98 (125)
.+..++.+.|.++ +|.+++++.|++.+.
T Consensus 80 -~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 80 -PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred -CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 5567888888666 899999999998763
No 23
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.40 E-value=0.001 Score=48.13 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=73.0
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcC------CcccEEEEEee------------------
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG------KAGSVIFGRYA------------------ 61 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g------~~GsIk~~~f~------------------ 61 (125)
.++.++.+.+|++++|+++.| +..+-..+|. ++|+|. +||.- .+|.+|. +|.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~d-pe~~a~ciPG-~qs~e~-~g~e~~~~v~l~ig~l~~-~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLND-PEQVAACIPG-VQSVET-NGDEYTAKVKLKIGPLKG-TFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred cccceEEecCCHHHHHHHhcC-HHHHHhhcCC-cceeee-cCCeEEEEEEEeecceeE-EEEEEEEEccccCCCcEEEEE
Confidence 467789999999999999997 5667778886 999994 46521 1244442 332
Q ss_pred -CCcccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCC-CCChHHH----HHHHHHHHHHHHhhhc
Q 033213 62 -NGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN-VPEPAAM----LQLCVDVTKDVATKLI 122 (125)
Q Consensus 62 -eGd~~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~~-~~~p~~~----~~~~~~~~K~ie~yLl 122 (125)
.|.-+..+-...+.+++.|.++|+++.|.++=+--+-- ..=+..+ ...+..++..+.++|-
T Consensus 78 g~G~~~~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 78 GSGGGAAGFADGTVDVQLEPSGEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred eecccccceeeeeeEEEEEEcCCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34333456677889999998779999999975543310 0011111 3344566666666654
No 24
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.14 E-value=0.032 Score=38.84 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=61.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCC-CcceEEEEeCCcCCcccEEEEEee------------------------
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPD-KVQSVDLLEGEWGKAGSVIFGRYA------------------------ 61 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~-~i~sve~~eGd~g~~GsIk~~~f~------------------------ 61 (125)
+..+-.+++|++++|+++.+ +.++.+++.. .--.++.++.|. .+|..-.+.+.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~td-p~~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSD-PAARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEITVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcC-HHHHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEEeeeEEEEEecCCceEEE
Confidence 55677789999999999997 4677777743 222233334443 33322222211
Q ss_pred -----CCcccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 033213 62 -----NGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 121 (125)
Q Consensus 62 -----eGd~~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~~~~~p~~~~~~~~~~~K~ie~yL 121 (125)
.++.... .-..++.+.|.++||.++.+-.+-..++.. ..+...+.-..++..|++||
T Consensus 80 t~~~~~~~~~~~--~s~v~~~l~~~~~gT~l~~~~~~~~~~~~~-~~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 80 TYTMHIGGTLLS--ASLATVEFAPEGGGTRLTLTEQGAFLDGDD-DPAGREQGTAALLDNLAAEL 141 (143)
T ss_pred EEeeccCCcccc--ceEEEEEEEECCCCEEEEEEEEEecccccc-hhhhHHHHHHHHHHHHHHHH
Confidence 1110001 124678888877788888776664332211 12233444566667777776
No 25
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.11 E-value=0.03 Score=38.59 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcc-eEEEEeCCcCCcccEEEEEee--CC--------ccc-----Cce
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQ-SVDLLEGEWGKAGSVIFGRYA--NG--------NLL-----DQY 69 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~-sve~~eGd~g~~GsIk~~~f~--eG--------d~~-----~~y 69 (125)
|+..+..+++|++++|+++.+ +.++.++++..-. .+...+.|+ .+|..-.+.+. +| .++ ..+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td-~e~~~~W~~~~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l 78 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTT-PEHITKWNFASDDWHCPSAENDL-RVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLI 78 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCC-HHHHhhCCCCCCCcccceeeecC-CcCCEEEEEEEcCCCCcccccceEEEEECCCCEE
Confidence 567889999999999999997 4677887532100 122234554 55554443331 11 111 000
Q ss_pred --e---EEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 033213 70 --K---SFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 122 (125)
Q Consensus 70 --k---s~~~~i~v~p~~~gs~~kwt~~Ye~~~~~~~~p~~~~~~~~~~~K~ie~yLl 122 (125)
. ....++.+.|.++||.++.+ +....+. ..+...+.-..++..|++||-
T Consensus 79 ~~~~~~~~~v~~~l~~~~~gT~l~l~--~~~~~~~--~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 79 EYTMEDGREVEVEFTEEGDGTKVVET--FDAENEN--PVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEcCCCCEEEEEEEECCCCEEEEEE--ECCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence 0 12567888887778887765 4433221 233344555677778888773
No 26
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=96.94 E-value=0.0066 Score=42.72 Aligned_cols=85 Identities=20% Similarity=0.356 Sum_probs=52.5
Q ss_pred EEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcC-----CcccEEEEEee------------------CCccc
Q 033213 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG-----KAGSVIFGRYA------------------NGNLL 66 (125)
Q Consensus 10 e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g-----~~GsIk~~~f~------------------eGd~~ 66 (125)
++++++|++++|+++.| +..+-+.+|. ++++|.+.++.. .+|.++. +|. +|.-.
T Consensus 2 s~~v~a~~~~vw~~l~D-~~~l~~ciPG-~~~~e~~~~~~~~~~~v~vG~i~~-~~~g~~~~~~~~~~~~~~~~~~g~g~ 78 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSD-PENLARCIPG-VESIEKVGDEYKGKVKVKVGPIKG-TFDGEVRITEIDPPESYTLEFEGRGR 78 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHHHHHHSTT-EEEEEEECTEEEEEEEEESCCCEE-EEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred cEEecCCHHHHHHHhcC-HHHHHhhCCC-cEEeeecCcEEEEEEEEEeccEEE-EEEEEEEEEEcCCCcceEeeeeccCC
Confidence 67899999999999998 5788889996 999988763210 1233322 332 11100
Q ss_pred CceeEEEEEEEEEecCC-CeEEEEEEEEEcCC
Q 033213 67 DQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPN 97 (125)
Q Consensus 67 ~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~ 97 (125)
..=-+....+++...++ ++.+.|+.+++--+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 79 GGGSSASANITLSLEDDGGTRVTWSADVEVGG 110 (140)
T ss_dssp TCCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred ccceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence 01113444555555433 69999999999765
No 27
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=96.93 E-value=0.024 Score=38.39 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPD 37 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~ 37 (125)
+++.++.+++|++++|+++.|. ..++.+.+.
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~-~~~~~W~~~ 31 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDP-EFTRQYWGG 31 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCc-hhhhheecc
Confidence 5788999999999999999974 677877765
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.92 E-value=0.016 Score=40.63 Aligned_cols=114 Identities=13% Similarity=0.009 Sum_probs=63.5
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee--CC-------ccc--Cc-----ee
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA--NG-------NLL--DQ-----YK 70 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~--eG-------d~~--~~-----yk 70 (125)
++.+-.+++|++++|+|+.+ +.++.+++...--.+...+.|+ .+|..-.+.+. +| .+. +- |.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Td-pe~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTD-PELVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCC-HHHHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence 56677889999999999997 4677776654333444556665 56554444332 11 111 00 10
Q ss_pred ---------EEEEEEEEEecCCCeEEEEEEEEEcCCCCC-CChHHHHHHHHHHHHHHHhhhc
Q 033213 71 ---------SFCCFFQVTPKGEGSFVTWTLKYEKPNENV-PEPAAMLQLCVDVTKDVATKLI 122 (125)
Q Consensus 71 ---------s~~~~i~v~p~~~gs~~kwt~~Ye~~~~~~-~~p~~~~~~~~~~~K~ie~yLl 122 (125)
....++++.|.++||.++.+..+....... ..-....+.-...+..|++||-
T Consensus 80 ~~~~~~~~~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEFEGLPDGVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEecCCCCCceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 124567788866688887765542110000 0001113344667788888874
No 29
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.91 E-value=0.01 Score=40.74 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.1
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPD 37 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~ 37 (125)
.++.++.+++|++++|++|.+ ...++++.|.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td-~~~~~~W~~~ 32 (145)
T cd08898 2 RIERTILIDAPRERVWRALTD-PEHFGQWFGV 32 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcC-hhhhhhcccc
Confidence 478899999999999999997 4677777775
No 30
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.81 E-value=0.025 Score=40.37 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee---------------CCcccCce-
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA---------------NGNLLDQY- 69 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~---------------eGd~~~~y- 69 (125)
++..+..+++|++++|++|.| +..++.+.|.. .++. .+|+-..+.+. .+..+ .|
T Consensus 12 ~i~~~~~i~Ap~e~Vw~altd-p~~~~~W~~~~-------~~~~-~~G~~~~~~~~~~~~~~~~~~v~e~~p~~~l-~~~ 81 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALTD-PERLARWFAPG-------TGDL-RVGGRVEFVMDDEEGPNATGTILACEPPRLL-AFT 81 (157)
T ss_pred EEEEEEecCCCHHHHHHHHcC-HHHHHhhcCCC-------CCCc-ccCceEEEEecCCCCCccceEEEEEcCCcEE-EEE
Confidence 578889999999999999997 46778887732 1232 34443333331 11100 01
Q ss_pred -----eEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 033213 70 -----KSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 122 (125)
Q Consensus 70 -----ks~~~~i~v~p~~~gs~~kwt~~Ye~~~~~~~~p~~~~~~~~~~~K~ie~yLl 122 (125)
.....++.+.+.++||.++.+.++.+..+ ......+.-..++..+.+||-
T Consensus 82 ~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e 136 (157)
T cd08899 82 WGEGGGESEVRFELAPEGDGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALE 136 (157)
T ss_pred ecCCCCCceEEEEEEEcCCCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHc
Confidence 11345677777666888877776654331 112223334455555555553
No 31
>PRK10724 hypothetical protein; Provisional
Probab=96.80 E-value=0.036 Score=40.21 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=60.7
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee------------------------
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA------------------------ 61 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~------------------------ 61 (125)
.+..++.++.|++++|+...|- ...|+.+|. .+++++++-++++ .+-.++.+
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dv-e~yp~flp~-~~~s~vl~~~~~~--~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~~ 91 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDV-QSYPQFLPG-CTGSRVLESTPGQ--MTAAVDVSKAGISKTFTTRNQLTSNQSILMQL 91 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHH-HHHHHhCcc-cCeEEEEEecCCE--EEEEEEEeeCCccEEEEEEEEecCCCEEEEEe
Confidence 5677899999999999999985 578999996 6677776543211 12222111
Q ss_pred -CCcccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCC
Q 033213 62 -NGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPN 97 (125)
Q Consensus 62 -eGd~~~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~ 97 (125)
+| -++.+...-++.|.++ +|.+..+++|+-.+
T Consensus 92 ~~G----pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 92 VDG----PFKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred cCC----ChhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 33 2677788888888764 79999999999776
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.63 E-value=0.13 Score=35.93 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=23.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccC
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACP 36 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p 36 (125)
+..+..+++|++++|+++.+ +.++.++++
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~-pe~~~~W~~ 30 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTE-PELLKQWFC 30 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCC-HHHHhccCC
Confidence 45677889999999999997 456667654
No 33
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.34 E-value=0.053 Score=37.63 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.8
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCccccccc
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSAC 35 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~ 35 (125)
++.+..+++|++++|+++.+ +.++.+++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~-p~~l~~W~ 29 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTD-PEHLAQWW 29 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCC-HHHHhhcc
Confidence 56778899999999999997 45667665
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.19 E-value=0.68 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=23.3
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccC
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACP 36 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p 36 (125)
++.+..+++|++++|+++.|. ..+.++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~-~~~~~W~~ 30 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDP-DALAKWLP 30 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCH-HHHhhcCC
Confidence 567788999999999999974 56777654
No 35
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=94.91 E-value=0.21 Score=37.77 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=59.5
Q ss_pred eeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCC---cC--C----------------cccEEEEEeeCC
Q 033213 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE---WG--K----------------AGSVIFGRYANG 63 (125)
Q Consensus 5 g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd---~g--~----------------~GsIk~~~f~eG 63 (125)
=.++..|+|..|++.+|..+.|. ..+|.+|-+ ++||++++-. |. . +|-+..|.-.+|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dL-e~lP~~Mkh-l~SVkVlddkrSrW~~~ap~g~~v~Wea~it~d~~~e~I~W~Sl~G 147 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDL-ENLPLWMKH-LDSVKVLDDKRSRWKANAPLGLEVEWEAEITKDIPGERIQWESLPG 147 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhh-hhhhHHHHh-hceeeccCCCccceeEcCCCCceEEEeehhhccCCCcEEeeecCCC
Confidence 35788899999999999999985 688999975 9999988653 21 1 122222222233
Q ss_pred cccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 033213 64 NLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 98 (125)
Q Consensus 64 d~~~~yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~ 98 (125)
--++ ....++|.+..+ .+.|+.++.|-+.+.
T Consensus 148 a~v~----NsG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 148 ARVE----NSGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CcCC----CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence 2111 134566666545 579999999998774
No 36
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=94.74 E-value=0.83 Score=31.90 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEEEeCCCHHHHHHHHhc
Q 033213 7 VEAGVEIKAPASTVREYFCS 26 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~ 26 (125)
++.++.+++|++++|+|+.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~ 21 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE 21 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh
Confidence 57889999999999999997
No 37
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=94.44 E-value=1 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=23.5
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccC
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACP 36 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p 36 (125)
++.+..+++|++++|+|+.+ +..+.+++.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~-~e~l~~W~~ 30 (126)
T cd08892 2 ISLTETFQVPAEELYEALTD-EERVQAFTR 30 (126)
T ss_pred eEEEEEECCCHHHHHHHHCC-HHHHHhhcC
Confidence 56778899999999999997 456667664
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.12 E-value=0.41 Score=33.06 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=22.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCccccccc
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSAC 35 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~ 35 (125)
...++.+++|++++|+++.+ +.++.++.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~-p~~l~~W~ 29 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVD-PEITTKFW 29 (136)
T ss_pred eeEEEEecCCHHHHHHHhcC-HHHhcccc
Confidence 46789999999999999997 45666653
No 39
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.48 E-value=3.1 Score=30.19 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=66.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCC-cccEEEEEe------------------------
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGK-AGSVIFGRY------------------------ 60 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~-~GsIk~~~f------------------------ 60 (125)
.+..+..+++||+++|+.+.|. ...|++.|. +++++++|-.+.. ......+.+
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~-e~~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~ 119 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDT-ESYPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSV 119 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhh-HhHHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEE
Confidence 5667778899999999999874 577999995 8888888764321 111110000
Q ss_pred ----eCCcc--c--Cc---eeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChHHH-----HHHHHHHHHHHHhh
Q 033213 61 ----ANGNL--L--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVATK 120 (125)
Q Consensus 61 ----~eGd~--~--~~---yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~~~~~p~~~-----~~~~~~~~K~ie~y 120 (125)
..++- . ++ .+.+.....+.|-++ +|.++....+++.+. + |.-+ +.....+++++.+.
T Consensus 120 ~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-i--P~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 120 TITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-I--PGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-C--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 01110 0 12 245555667777655 699999998888763 2 4333 23344566666543
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=4.2 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=28.2
Q ss_pred cceeEEEEEEeCCCHHHHHHHHhcCCcccccccC
Q 033213 3 LTGQVEAGVEIKAPASTVREYFCSKLHHVSSACP 36 (125)
Q Consensus 3 ~~g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p 36 (125)
....++.|..++.|++++|+|+.+ +.++.+++.
T Consensus 6 ~~~~~~~er~i~aP~e~Vf~A~Td-pe~l~~W~~ 38 (149)
T COG3832 6 EDRTLEIERLIDAPPEKVFEALTD-PELLARWFM 38 (149)
T ss_pred CCceEEEEEeecCCHHHHHHHhcC-HHHHHhhcC
Confidence 346788999999999999999997 578888776
No 41
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=88.72 E-value=0.41 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eG 47 (125)
.++.++.++-+.+.+-..+.|...++|+++| .+++++ ++|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p-~ik~v~-~~~ 41 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFP-PIKSVK-VEE 41 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHST-TEEEEE--ST
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCC-ceEEEE-ecC
Confidence 4678899999999999999998889999999 489999 444
No 42
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=84.96 E-value=10 Score=26.12 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHhcCCcccccc
Q 033213 14 KAPASTVREYFCSKLHHVSSA 34 (125)
Q Consensus 14 ~~~a~k~~~~~~~~~~~lpk~ 34 (125)
.+|++++|+|+.+ +.++.++
T Consensus 2 ~ap~e~Vw~A~Td-p~~l~~w 21 (132)
T PTZ00220 2 YVPPEVLYNAFLD-AYTLTRL 21 (132)
T ss_pred CCCHHHHHHHHcC-HHHHHHH
Confidence 6899999999997 4566665
No 43
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=84.27 E-value=13 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.0
Q ss_pred EEEEEEEEEecCCCeEEEEEEEEEcC
Q 033213 71 SFCCFFQVTPKGEGSFVTWTLKYEKP 96 (125)
Q Consensus 71 s~~~~i~v~p~~~gs~~kwt~~Ye~~ 96 (125)
++.+++.+.|.++||...++.+.+-.
T Consensus 103 ~~~G~~~L~~~~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 103 SISGTMRLRPDGGGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEEEecCCCCEEEEEEEEEEEE
Confidence 67788888896669999998887754
No 44
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=82.48 E-value=13 Score=25.58 Aligned_cols=89 Identities=16% Similarity=0.277 Sum_probs=50.8
Q ss_pred EEEEeCCCHHHHHHHHhcC-CcccccccCCCc-----ceEEEEeC-CcCCcccEEEEEeeCCccc-----CceeEEEEEE
Q 033213 9 AGVEIKAPASTVREYFCSK-LHHVSSACPDKV-----QSVDLLEG-EWGKAGSVIFGRYANGNLL-----DQYKSFCCFF 76 (125)
Q Consensus 9 ~e~~~~~~a~k~~~~~~~~-~~~lpk~~p~~i-----~sve~~eG-d~g~~GsIk~~~f~eGd~~-----~~yks~~~~i 76 (125)
...++++||+.||+.+.++ -.-+.+.....+ +..++..- ..+..++|+...|..+..- .....+..+.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L~G~~Y~K~~~~~~~~~v~It~~~~~~~Y~~~~~s~~~~~~i~Y 82 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQLKGFSYQKKFKNKREAKVKITEYEPNKRYAATFSSSRGTFTISY 82 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhcCCcEEEEEcCCCCEEEEEEEEEcCCCEEEEEEEecCCCEEEEE
Confidence 4556899999999998743 333444333333 33333221 1124678887777544321 1122466777
Q ss_pred EEEecCCC-eEEEEEEEEEcCC
Q 033213 77 QVTPKGEG-SFVTWTLKYEKPN 97 (125)
Q Consensus 77 ~v~p~~~g-s~~kwt~~Ye~~~ 97 (125)
++.|.++| |.+..+=+++..+
T Consensus 83 ~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 83 EIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEECCCCcEEEEEEEEEccCC
Confidence 77887777 7776666666544
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=81.07 E-value=24 Score=27.41 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=73.8
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee---------------------CCc
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA---------------------NGN 64 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~---------------------eGd 64 (125)
.+..|..+.+|++++|..+.| ...-+++.++ .+++++++--+...+ |-.+.+. +|+
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D-~~~R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSD-PFKRPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhC-cchhhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 356788899999999999997 4688899985 888898873211122 2222222 322
Q ss_pred -c-c-------------Cc---eeEEEEEEEEEecCC-CeEEEEEEEEEcCCC-CC-CChHHHHHHHHHHHHHHHhhhcc
Q 033213 65 -L-L-------------DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE-NV-PEPAAMLQLCVDVTKDVATKLIP 123 (125)
Q Consensus 65 -~-~-------------~~---yks~~~~i~v~p~~~-gs~~kwt~~Ye~~~~-~~-~~p~~~~~~~~~~~K~ie~yLl~ 123 (125)
+ . ++ -+.+.+-..+.|.++ +|.+.....-+|.-- .+ -+-..+-......|+..+.||..
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVT 234 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhcc
Confidence 1 0 11 236777778888765 688777776665321 11 12234455677888999999986
Q ss_pred C
Q 033213 124 Q 124 (125)
Q Consensus 124 n 124 (125)
|
T Consensus 235 ~ 235 (235)
T cd08873 235 N 235 (235)
T ss_pred C
Confidence 5
No 46
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=81.03 E-value=13 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHhcCCcccccc
Q 033213 14 KAPASTVREYFCSKLHHVSSA 34 (125)
Q Consensus 14 ~~~a~k~~~~~~~~~~~lpk~ 34 (125)
++|++++|++|.+ +..+.++
T Consensus 1 ~ap~e~Vw~a~t~-~~~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTD-PEGLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHS-HHHHHHH
T ss_pred CcCHHHHHHHHCC-HhHHhhc
Confidence 5899999999997 3566666
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=77.26 E-value=28 Score=26.02 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=64.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCC-----------c-c--------cEEEEEeeCCc-c
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGK-----------A-G--------SVIFGRYANGN-L 65 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~-----------~-G--------sIk~~~f~eGd-~ 65 (125)
+-.|..+++|++++++++.+.....|++.++ +.++++++--... | | +++.+...+++ +
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~ 129 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCV 129 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEE
Confidence 5578888999999998877555777888875 5565554331100 0 0 01111110111 1
Q ss_pred c-------------Cc---eeEEEEEEEEEecC---CCeEEEEEEEEEcCCCCCCCh--HHH-HHHHHHHHHHHHhhhc
Q 033213 66 L-------------DQ---YKSFCCFFQVTPKG---EGSFVTWTLKYEKPNENVPEP--AAM-LQLCVDVTKDVATKLI 122 (125)
Q Consensus 66 ~-------------~~---yks~~~~i~v~p~~---~gs~~kwt~~Ye~~~~~~~~p--~~~-~~~~~~~~K~ie~yLl 122 (125)
+ ++ -+...+-..++|.+ +.|.+.|.+.-+++|. +|.. +.+ .+.....++.+.+++.
T Consensus 130 ~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 130 LAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 0 11 22445556677764 3599999999999886 4321 222 3444566666666553
No 48
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=68.84 E-value=42 Score=24.36 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=60.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCC--------cccEEEEEee------CCc-c-----c
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGK--------AGSVIFGRYA------NGN-L-----L 66 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~--------~GsIk~~~f~------eGd-~-----~ 66 (125)
++.---++-+|+++|+...|- .-.|+-+|- -.+..+.+.+... -+.|+. +|. .++ . .
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV-~~YP~FlP~-C~~s~v~~~~~~~l~A~l~V~~k~i~e-~F~Trv~~~~~~~~I~~~l~ 80 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDV-ESYPEFLPW-CSASRVLERNERELIAELDVGFKGIRE-TFTTRVTLKPTARSIDMKLI 80 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHH-HhCchhccc-cccceEeccCcceeEEEEEEEhhheee-eeeeeeeecCchhhhhhhhh
Confidence 444555688999999998863 677888885 5555667765322 123333 332 444 2 1
Q ss_pred -CceeEEEEEEEEEec-CCCeEEEEEEEEEcCCC
Q 033213 67 -DQYKSFCCFFQVTPK-GEGSFVTWTLKYEKPNE 98 (125)
Q Consensus 67 -~~yks~~~~i~v~p~-~~gs~~kwt~~Ye~~~~ 98 (125)
.-|+.+..+=+++|- +++|.+..-++||-++-
T Consensus 81 ~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 81 DGPFKYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred cCChhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 237788888899995 44899999999999873
No 49
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=58.52 E-value=13 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=29.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eG 47 (125)
.+..+..+.+|++++|.++.......|++.++ +.++++++-
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~-~~~~~vi~~ 90 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPEKMVLWNKT-VSACQVLQR 90 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChhhccccCcc-chhhhheee
Confidence 35677888999999996544335788888885 667666543
No 50
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=55.71 E-value=80 Score=23.21 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=29.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeC
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eG 47 (125)
+-++..+.+|++.+|.++.+.....+++.+. +..+++++-
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~ 89 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQV 89 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEE
Confidence 5567788999999998776445678888886 666665544
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=55.25 E-value=22 Score=27.61 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=32.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eG 47 (125)
.+-.|..+.+|++++|..+.| ....|++.++ ++++++++-
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D-~~~r~~Wd~~-~~e~~vIe~ 121 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSD-LRRRPEWDKH-YRSCELVQQ 121 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhC-hhhhhhhHhh-ccEEEEEEe
Confidence 356777889999999999986 5788999985 778888755
No 52
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=55.00 E-value=52 Score=23.67 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee
Q 033213 14 KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA 61 (125)
Q Consensus 14 ~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~ 61 (125)
..+.+.+|+.+......-...+| .|.+|++++-+ ...-.|.++|+
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~fg 61 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTFG 61 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEET
T ss_pred ccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEEC
Confidence 34567899997733222233445 68999999876 45678999996
No 53
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=50.84 E-value=90 Score=22.37 Aligned_cols=48 Identities=4% Similarity=-0.020 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEeeCCcc
Q 033213 15 APASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNL 65 (125)
Q Consensus 15 ~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~eGd~ 65 (125)
...+++|..+.-..-.-....| .+.+|++++-++ --..|.++|....+
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~~--~~l~Rel~f~~~~v 64 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVP-GLDRCEVLSESG--TVLERELTFGPAKI 64 (141)
T ss_pred cCHHHHHhHHHhhhCCchhccc-ccceEEEEecCC--CEEEEEEEECCceE
Confidence 4578999997622222222344 589999998873 24679999975443
No 54
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=50.52 E-value=27 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeC
Q 033213 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eG 47 (125)
.+-+|..+.+|+++++..+.|. ..-|++.++ ..++++++-
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~-~~r~~Wd~~-~~e~~vI~q 118 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDF-TKRPLWDPH-FLSCEVIDW 118 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhCh-hhhchhHHh-hceEEEEEE
Confidence 4667788899999999999984 688888885 677777655
No 55
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=44.90 E-value=10 Score=26.95 Aligned_cols=11 Identities=55% Similarity=1.380 Sum_probs=9.2
Q ss_pred cceEEEEeCC-c
Q 033213 39 VQSVDLLEGE-W 49 (125)
Q Consensus 39 i~sve~~eGd-~ 49 (125)
.|.|+++||| |
T Consensus 66 mqgI~LleGDVw 77 (131)
T PF08004_consen 66 MQGIELLEGDVW 77 (131)
T ss_pred hcCceeeccccc
Confidence 5688999998 6
No 56
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=40.00 E-value=73 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=26.3
Q ss_pred CcccEEEEEeeCCc------ccCceeEEEEEEEEEecCCCeEEEEEE
Q 033213 51 KAGSVIFGRYANGN------LLDQYKSFCCFFQVTPKGEGSFVTWTL 91 (125)
Q Consensus 51 ~~GsIk~~~f~eGd------~~~~yks~~~~i~v~p~~~gs~~kwt~ 91 (125)
-+|+|..|...+|| .+-..++-+..+.+.+.-+|.+.++.+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v 55 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSV 55 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEe
Confidence 35777777776444 444466777777776655687666654
No 57
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=35.12 E-value=55 Score=19.75 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=25.0
Q ss_pred cccEEEEEee------CCcccCceeEEEEEEEEEecCCCeEEEEEE
Q 033213 52 AGSVIFGRYA------NGNLLDQYKSFCCFFQVTPKGEGSFVTWTL 91 (125)
Q Consensus 52 ~GsIk~~~f~------eGd~~~~yks~~~~i~v~p~~~gs~~kwt~ 91 (125)
+|.|..|... .|+.+-.+++-+....+....+|.+.+|.+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~ 54 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINV 54 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEe
Confidence 4556666555 445544466666666766655688877775
No 58
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=35.03 E-value=35 Score=23.05 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=34.1
Q ss_pred ceeEEEEEEeCCCHHHHHHHHhc-CCcccccccCCC---cceEEEEeCCcCCcccEEEEEee
Q 033213 4 TGQVEAGVEIKAPASTVREYFCS-KLHHVSSACPDK---VQSVDLLEGEWGKAGSVIFGRYA 61 (125)
Q Consensus 4 ~g~~~~e~~~~~~a~k~~~~~~~-~~~~lpk~~p~~---i~sve~~eGd~g~~GsIk~~~f~ 61 (125)
+|...+.+.+.-| +-|+.++. ..-.+.|.=... =-+++.+||+| -|+-+..+.|.
T Consensus 3 ~aY~Ia~vdv~D~--e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w-~ptr~vviEFp 61 (96)
T COG5470 3 KAYWIADVDVRDP--EQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEW-RPTRNVVIEFP 61 (96)
T ss_pred ceEEEEEEeecCH--HHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCC-CcccEEEEEcC
Confidence 4667777776655 66666662 222222211111 12578899998 78999999986
No 59
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=32.20 E-value=2.4e+02 Score=23.46 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=60.8
Q ss_pred eEEEEEEeCCCHHHHH---HHHhcC-Ccccc--cccCCCcceEEEEeCCcCCcccEEEEEee-----CCcccCceeEEEE
Q 033213 6 QVEAGVEIKAPASTVR---EYFCSK-LHHVS--SACPDKVQSVDLLEGEWGKAGSVIFGRYA-----NGNLLDQYKSFCC 74 (125)
Q Consensus 6 ~~~~e~~~~~~a~k~~---~~~~~~-~~~lp--k~~p~~i~sve~~eGd~g~~GsIk~~~f~-----eGd~~~~yks~~~ 74 (125)
-+|.-+-++.+++++= +|+++. +..+. +.-.+..+ .|.+...|.... ...+.+ +|--|++..+++.
T Consensus 176 IVEDGlmVQi~~e~m~~Lr~ALr~~kDf~I~cg~~d~~~~~-~e~V~i~Wv~~d--~~~n~gv~SpIDg~slegv~s~ri 252 (356)
T PF11979_consen 176 IVEDGLMVQITPETMESLRQALREMKDFTITCGKVDAEDSQ-VEYVDIQWVDDD--ENFNKGVISPIDGKSLEGVPSVRI 252 (356)
T ss_pred EEeeeeEEEecHHHHHHHHHHHHhCCCeEEecCCccccccc-ccEEEEEEecCC--cccCCCcccCCCCceecCceeeee
Confidence 4567777888888764 556632 22121 00000011 234444442221 111222 7777777777776
Q ss_pred EEEEEecCCCeEEEEEEEEEcCCCCC---C-ChHHH----HHHHHHHHHHHHhhh
Q 033213 75 FFQVTPKGEGSFVTWTLKYEKPNENV---P-EPAAM----LQLCVDVTKDVATKL 121 (125)
Q Consensus 75 ~i~v~p~~~gs~~kwt~~Ye~~~~~~---~-~p~~~----~~~~~~~~K~ie~yL 121 (125)
.=..--+.+|-.++||=.|.-.++.. + +|.+. .+.|.....++..||
T Consensus 253 ~~~~~~~~~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL 307 (356)
T PF11979_consen 253 FQGSEYKANGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHL 307 (356)
T ss_pred cccceeecCCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 43333334589999999999776544 2 24333 344566666777665
No 60
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=31.94 E-value=42 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=14.3
Q ss_pred CCcccEEEEEee-CCcc
Q 033213 50 GKAGSVIFGRYA-NGNL 65 (125)
Q Consensus 50 g~~GsIk~~~f~-eGd~ 65 (125)
+.+++||.++|+ |||+
T Consensus 28 ~k~d~IrIv~yT~EGdP 44 (98)
T PF14275_consen 28 GKPDKIRIVQYTIEGDP 44 (98)
T ss_pred CCCCEEEEEEecCCCCC
Confidence 478999999999 9997
No 61
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=31.57 E-value=1.2e+02 Score=24.46 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEeeCCcccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 033213 20 VREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 99 (125)
Q Consensus 20 ~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~eGd~~~~yks~~~~i~v~p~~~gs~~kwt~~Ye~~~~~ 99 (125)
+.+++.+ .-+-|...++.+.+ +.--|| -.|-+..|...+||- .+|.+.+|++||--+..+...+..+.
T Consensus 97 Vr~a~~~-~~lR~sn~~~p~~~-r~Ntgd--Ntpa~i~~~~v~gd~--------v~i~~~~KGGGsEn~s~l~~l~Ps~~ 164 (297)
T COG1951 97 VREATED-NPLRPSNAVDPLTK-RVNTGD--NTPAQIHVEIVPGDE--------VEILVAAKGGGSENKSALKMLTPSEG 164 (297)
T ss_pred HHHhccc-CCcchhcccCchhc-cccCCC--CCCCeEEEEEcCCCc--------EEEEEEecCCCccchhhhheeCchhh
Confidence 3444533 23445345443432 122355 345788888878884 78999999999999887777776654
Q ss_pred CCChHHHHHHHHHHHHH
Q 033213 100 VPEPAAMLQLCVDVTKD 116 (125)
Q Consensus 100 ~~~p~~~~~~~~~~~K~ 116 (125)
. +.++++.+...+.
T Consensus 165 ~---e~i~~fVletv~~ 178 (297)
T COG1951 165 Y---EGIKDFVLETVRT 178 (297)
T ss_pred h---hHHHHHHHHHHHh
Confidence 3 5677777665543
No 62
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=29.31 E-value=47 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=18.5
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHhhh
Q 033213 95 KPNENVPEPAAMLQLCVDVTKDVATKL 121 (125)
Q Consensus 95 ~~~~~~~~p~~~~~~~~~~~K~ie~yL 121 (125)
|.+++..-|+++.+.+..+++.||..|
T Consensus 105 P~d~D~~~p~~~v~~~~~~l~ele~~L 131 (132)
T PF08868_consen 105 PVDKDAEFPEKWVDKGEELLKELEDEL 131 (132)
T ss_dssp ---T-B-EEHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 333333347789999999999999886
No 63
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=28.61 E-value=2.5e+02 Score=20.83 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=29.0
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCc-ccccccCCCcceEEEEeC
Q 033213 7 VEAGVEIKAPASTVREYFCSKLH-HVSSACPDKVQSVDLLEG 47 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~-~lpk~~p~~i~sve~~eG 47 (125)
+-.|..+.++++++|+.+.|... .-+++-+. +.+++++|-
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~ 88 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEA 88 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEE
Confidence 66788889999999999986533 33677774 666666654
No 64
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=28.29 E-value=2.6e+02 Score=20.98 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=60.4
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee--------------------CCcc-
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA--------------------NGNL- 65 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~--------------------eGd~- 65 (125)
+-.|..+.+|++++|..+.| ...-+++.+ .+++.++++--.... .|-.+.+. +|+.
T Consensus 47 ~~ge~~v~as~~~v~~ll~D-~~~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKD-PRTRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhC-cchhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 34677889999999999987 467888888 588888887532112 22222221 2221
Q ss_pred --------------cC-ce---eEEEEEEEEEec---CC-CeEEEEEEEEEcCCCCCCC
Q 033213 66 --------------LD-QY---KSFCCFFQVTPK---GE-GSFVTWTLKYEKPNENVPE 102 (125)
Q Consensus 66 --------------~~-~y---ks~~~~i~v~p~---~~-gs~~kwt~~Ye~~~~~~~~ 102 (125)
.. +| ..+.+-..+.|. +. .|.+...+.-++.|.++|.
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 11 22 256666677786 44 5888888888888666653
No 65
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=27.88 E-value=2.1e+02 Score=19.77 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=55.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEEEEEee-------------------C-Ccc-
Q 033213 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-------------------N-GNL- 65 (125)
Q Consensus 7 ~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk~~~f~-------------------e-Gd~- 65 (125)
+-.+..+++|++.++.++.+ ....+++-|. +.++++++-.. ..-.|....+. + |..
T Consensus 41 ~k~~~~i~~~~~~v~~~l~d-~~~~~~w~~~-~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~ 117 (193)
T cd00177 41 LKAEGVIPASPEQVFELLMD-IDLRKKWDKN-FEEFEVIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYV 117 (193)
T ss_pred EEEEEEECCCHHHHHHHHhC-Cchhhchhhc-ceEEEEEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEE
Confidence 44677778899999999997 4567888874 88888887642 22233333332 1 211
Q ss_pred -----------c--Ccee---EEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 033213 66 -----------L--DQYK---SFCCFFQVTPKGE-GSFVTWTLKYEKPNE 98 (125)
Q Consensus 66 -----------~--~~yk---s~~~~i~v~p~~~-gs~~kwt~~Ye~~~~ 98 (125)
. .++- .+..-+.+.|.++ +|.+.+....++.+.
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 0 1111 2233455667644 799999999988874
No 66
>PRK06748 hypothetical protein; Validated
Probab=27.04 E-value=1.2e+02 Score=19.63 Aligned_cols=41 Identities=7% Similarity=-0.119 Sum_probs=26.1
Q ss_pred CcccEEEEEeeCCccc------CceeE-EEEEEEEEecCCCeEEEEEE
Q 033213 51 KAGSVIFGRYANGNLL------DQYKS-FCCFFQVTPKGEGSFVTWTL 91 (125)
Q Consensus 51 ~~GsIk~~~f~eGd~~------~~yks-~~~~i~v~p~~~gs~~kwt~ 91 (125)
-+|+|..|...+||-. -..++ -+.+..+....+|.+.++.+
T Consensus 11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v 58 (83)
T PRK06748 11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEV 58 (83)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEe
Confidence 5789999988866643 33555 44566665534587777654
No 67
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.23 E-value=1.1e+02 Score=21.45 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=29.2
Q ss_pred CcccEEEEEeeCCc------ccCceeEEEEEEEEEecCCCeEEEEEE
Q 033213 51 KAGSVIFGRYANGN------LLDQYKSFCCFFQVTPKGEGSFVTWTL 91 (125)
Q Consensus 51 ~~GsIk~~~f~eGd------~~~~yks~~~~i~v~p~~~gs~~kwt~ 91 (125)
-+|.|..|.+.+|| .+-.+++-+....+....+|.+.++.+
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v 114 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHV 114 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEe
Confidence 46899999998554 444567777777776656687777765
No 68
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=2.7e+02 Score=20.38 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=43.0
Q ss_pred eEEEEeCCcCCcccEEEEEee-------------CCcccCceeEEEEEEEEEecCC------CeEEEEEEEEEcCCCCCC
Q 033213 41 SVDLLEGEWGKAGSVIFGRYA-------------NGNLLDQYKSFCCFFQVTPKGE------GSFVTWTLKYEKPNENVP 101 (125)
Q Consensus 41 sve~~eGd~g~~GsIk~~~f~-------------eGd~~~~yks~~~~i~v~p~~~------gs~~kwt~~Ye~~~~~~~ 101 (125)
..|+-.|+|...-.+|+++|. +|+++ ..++++...++ --+..|+-.|.-.-
T Consensus 68 ~yeI~d~~g~~~~vrKK~tf~Rdk~e~d~~~~eihGNi~------d~efkl~dg~~~~aeVsKkwf~~rdTY~l~v---- 137 (159)
T COG4894 68 RYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHGNIW------DDEFKLTDGENVRAEVSKKWFSWRDTYHLQV---- 137 (159)
T ss_pred eeEEEcCCCCEEEEEEEEEEEeeeEEEcCCCeEEeccee------ceEEEEecCCceehhheeeeEeccceEEEEE----
Confidence 467778886556778889998 45544 23455555333 13556777777543
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 033213 102 EPAAMLQLCVDVTKDVAT 119 (125)
Q Consensus 102 ~p~~~~~~~~~~~K~ie~ 119 (125)
.|+++...+..+.=++|-
T Consensus 138 apde~a~lii~i~VaLD~ 155 (159)
T COG4894 138 APDEDALLIIAIAVALDM 155 (159)
T ss_pred cCchhhHHHHHHHHHHHH
Confidence 566776677666666653
No 69
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=25.20 E-value=2.7e+02 Score=20.20 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=55.1
Q ss_pred eeEEEEEEeCCCHHHHHHHHhcCCcccccccCCCcceEEEEeCCcCCcccEE-------------EEEee--C-C----c
Q 033213 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVI-------------FGRYA--N-G----N 64 (125)
Q Consensus 5 g~~~~e~~~~~~a~k~~~~~~~~~~~lpk~~p~~i~sve~~eGd~g~~GsIk-------------~~~f~--e-G----d 64 (125)
|++.....|.+|.+-+|+.+.. +..|..+.|.-+ |-+-+|+--+.||-. .|.-- + | .
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsr-pd~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~ 78 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSR-PDALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS 78 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcC-ccHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcc
Confidence 6788889999999999998874 445555666533 333334211222211 11110 1 1 1
Q ss_pred ----cc--CceeE--EEEEEEEEecCCCeEEEEEEEEEcCCC
Q 033213 65 ----LL--DQYKS--FCCFFQVTPKGEGSFVTWTLKYEKPNE 98 (125)
Q Consensus 65 ----~~--~~yks--~~~~i~v~p~~~gs~~kwt~~Ye~~~~ 98 (125)
+. .-+++ ...+=++.+.+++++..=.+.||....
T Consensus 79 ~FtDv~i~gPfp~~~WrHtH~F~~egg~TvliD~Vsye~p~g 120 (153)
T COG4276 79 RFTDVCITGPFPALNWRHTHNFVDEGGGTVLIDSVSYELPAG 120 (153)
T ss_pred eeeeeeecCCccceeeEEEeeeecCCCcEEEEeeEEeeccCc
Confidence 10 12343 566778888677999999999998765
No 70
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=22.07 E-value=1.9e+02 Score=24.76 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=32.0
Q ss_pred eCCcCCcccEEEEEeeCCc------ccCceeEEEEEEEEEecCCCeEEEEEE
Q 033213 46 EGEWGKAGSVIFGRYANGN------LLDQYKSFCCFFQVTPKGEGSFVTWTL 91 (125)
Q Consensus 46 eGd~g~~GsIk~~~f~eGd------~~~~yks~~~~i~v~p~~~gs~~kwt~ 91 (125)
-|++-..|+|..|.-.+|| .+-.+++-+.++++....+|.+.+|.+
T Consensus 99 lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 99 MGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150 (463)
T ss_pred CCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence 3554568999999877555 444577888888887755677777664
Done!