Query 033214
Match_columns 125
No_of_seqs 105 out of 362
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 6.5E-54 2.2E-58 305.9 13.5 116 3-118 3-118 (118)
2 3m95_A Autophagy related prote 100.0 4.9E-54 1.7E-58 309.1 11.6 117 2-118 8-124 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 5.6E-53 1.9E-57 301.4 11.3 114 5-118 6-119 (119)
4 2zjd_A Microtubule-associated 100.0 1.7E-51 5.7E-56 297.7 10.0 119 1-119 6-126 (130)
5 1eo6_A GATE-16, golgi-associat 100.0 5.6E-51 1.9E-55 290.1 11.7 116 4-119 2-117 (117)
6 2r2q_A Gamma-aminobutyric acid 100.0 8.7E-47 3E-51 265.9 11.2 110 4-113 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 1.4E-34 4.8E-39 197.8 9.6 86 32-118 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 4.3E-34 1.5E-38 197.1 8.5 85 28-118 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 2.7E-32 9.1E-37 186.5 9.0 85 28-118 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.3 0.044 1.5E-06 43.7 6.7 98 11-112 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 94.9 0.078 2.7E-06 41.8 7.1 80 29-112 183-270 (275)
12 3vqi_A ATG5; autophagy, E3-lik 94.5 0.055 1.9E-06 42.7 5.3 74 27-110 196-272 (274)
13 3goe_A DNA repair protein RAD6 94.1 0.08 2.7E-06 34.8 4.5 47 48-94 21-67 (82)
14 3a4r_A Nfatc2-interacting prot 85.8 3.9 0.00013 25.6 6.8 47 49-96 21-67 (79)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 83.9 4.7 0.00016 24.9 6.5 75 28-113 5-80 (87)
16 1oey_A P67-PHOX, neutrophil cy 82.5 3.1 0.00011 27.1 5.3 56 52-109 19-78 (83)
17 2uyz_B Small ubiquitin-related 82.5 2.6 9E-05 25.6 4.8 59 50-112 17-75 (79)
18 2k8h_A Small ubiquitin protein 81.9 6.2 0.00021 26.6 6.9 62 28-96 24-85 (110)
19 1uh6_A Ubiquitin-like 5; beta- 81.4 4.1 0.00014 27.2 5.7 59 50-112 42-100 (100)
20 1we7_A SF3A1 protein; structur 80.2 10 0.00035 25.0 8.6 86 23-113 18-108 (115)
21 1wy8_A NP95-like ring finger p 80.0 4.3 0.00015 25.2 5.3 60 50-113 22-82 (89)
22 1wyw_B Ubiquitin-like protein 78.5 5.8 0.0002 25.5 5.7 75 28-112 19-93 (97)
23 3mtn_B UBA80, ubcep1, ubiquiti 75.8 2.6 9E-05 25.7 3.3 60 50-113 17-76 (85)
24 1ndd_A NEDD8, protein (ubiquit 75.7 2.9 9.9E-05 24.8 3.4 58 50-112 14-72 (76)
25 4dwf_A HLA-B-associated transc 75.3 4.1 0.00014 25.4 4.2 75 28-113 3-77 (90)
26 2hj8_A Interferon-induced 17 k 75.0 5 0.00017 25.1 4.5 60 50-113 18-77 (88)
27 2dzi_A Ubiquitin-like protein 74.4 3.3 0.00011 25.0 3.4 45 50-95 21-65 (81)
28 3a9j_A Ubiquitin; protein comp 73.6 3.3 0.00011 24.5 3.2 58 50-112 14-72 (76)
29 3n3k_B Ubiquitin; hydrolase, p 73.4 2.5 8.7E-05 25.8 2.7 60 50-113 17-76 (85)
30 3plu_A Ubiquitin-like modifier 73.0 17 0.00059 23.9 6.9 82 19-111 10-92 (93)
31 1we6_A Splicing factor, putati 72.9 10 0.00034 24.8 5.8 81 22-112 19-103 (111)
32 4eew_A Large proline-rich prot 72.3 5.3 0.00018 24.7 4.1 62 27-95 14-75 (88)
33 1wx7_A Ubiquilin 3; ubiquitin- 72.2 9.4 0.00032 24.7 5.5 61 50-114 30-90 (106)
34 2l7r_A Ubiquitin-like protein 69.9 7.9 0.00027 24.6 4.6 72 28-111 17-88 (93)
35 1yqb_A Ubiquilin 3; structural 69.7 7 0.00024 25.3 4.4 74 29-113 21-94 (100)
36 2kan_A Uncharacterized protein 69.7 9.7 0.00033 24.3 5.0 75 28-113 13-88 (94)
37 3phx_B Ubiquitin-like protein 69.5 4.8 0.00016 24.4 3.3 58 50-111 18-75 (79)
38 1ip9_A BEM1 protein; ubiquitin 68.8 5.8 0.0002 26.0 3.7 23 51-73 26-48 (85)
39 3k9o_B Ubiquitin, UBB+1; E2-25 68.8 4.2 0.00014 25.6 3.1 60 50-113 15-74 (96)
40 2bwf_A Ubiquitin-like protein 68.5 5.5 0.00019 23.7 3.4 57 50-111 17-74 (77)
41 4dbg_A Ranbp-type and C3HC4-ty 68.3 18 0.00061 24.2 6.2 61 30-95 24-84 (105)
42 3dbh_I NEDD8; cell cycle, acti 68.2 3.7 0.00013 25.2 2.7 58 50-111 26-83 (88)
43 2jxx_A Nfatc2-interacting prot 68.0 13 0.00044 24.5 5.4 47 49-96 39-85 (97)
44 2kk8_A Uncharacterized protein 67.6 6.4 0.00022 24.7 3.7 57 51-111 25-82 (84)
45 3v6c_B Ubiquitin; structural g 67.0 8.7 0.0003 24.0 4.3 56 50-110 31-87 (91)
46 1wx8_A Riken cDNA 4931431F19; 65.1 10 0.00035 23.9 4.4 58 50-112 30-88 (96)
47 2kd0_A LRR repeats and ubiquit 64.3 5.4 0.00019 25.0 2.9 56 51-111 26-82 (85)
48 1yx5_B Ubiquitin; proteasome, 64.1 6.3 0.00022 25.1 3.2 60 50-114 14-74 (98)
49 1wju_A NEDD8 ultimate buster-1 64.0 11 0.00039 25.0 4.5 45 50-95 33-77 (100)
50 1wgd_A Homocysteine-responsive 63.3 13 0.00045 23.3 4.7 58 53-112 26-85 (93)
51 2lxa_A Ubiquitin-like protein 63.1 20 0.00069 22.8 5.5 43 53-96 20-63 (87)
52 2io0_B Small ubiquitin-related 62.9 15 0.00053 23.6 5.0 48 48-96 17-64 (91)
53 4fbj_B NEDD8; effector-HOST ta 62.5 6.1 0.00021 24.8 2.9 60 50-113 14-73 (88)
54 2faz_A Ubiquitin-like containi 61.9 6.2 0.00021 23.7 2.8 56 51-111 18-75 (78)
55 1wm3_A Ubiquitin-like protein 61.5 12 0.00041 22.7 4.0 48 48-96 13-60 (72)
56 1ttn_A DC-UBP, dendritic cell- 61.3 22 0.00075 23.0 5.6 60 50-114 37-97 (106)
57 2fnj_B Transcription elongatio 61.1 27 0.00093 23.8 6.2 63 53-118 18-86 (118)
58 3gs2_A E3 ubiquitin-protein li 60.5 37 0.0013 23.2 6.8 84 30-113 3-109 (111)
59 4hcn_B Polyubiquitin, ubiquiti 60.5 7 0.00024 25.0 2.9 73 28-111 20-93 (98)
60 2wyq_A HHR23A, UV excision rep 60.3 25 0.00086 21.1 6.6 76 28-114 3-82 (85)
61 2kvr_A Ubiquitin carboxyl-term 60.3 6.5 0.00022 27.3 2.9 53 49-101 58-118 (130)
62 3m63_B Ubiquitin domain-contai 59.5 6 0.0002 25.8 2.5 60 29-96 27-86 (101)
63 1vd2_A Protein kinase C, IOTA 59.0 34 0.0012 22.2 7.2 61 49-109 18-86 (89)
64 2ojr_A Ubiquitin; lanthide-bin 58.8 12 0.00043 24.4 4.0 58 50-112 49-107 (111)
65 1x1m_A Ubiquitin-like protein 58.8 30 0.001 22.4 5.9 56 56-114 44-101 (107)
66 1sif_A Ubiquitin; hydrophobic 58.1 8.4 0.00029 24.1 2.9 58 50-112 23-81 (88)
67 1v5t_A 8430435I17RIK protein; 56.9 21 0.00072 22.3 4.8 60 52-114 23-84 (90)
68 2io1_B Small ubiquitin-related 56.2 16 0.00055 23.6 4.1 47 49-96 20-66 (94)
69 1j0g_A Hypothetical protein 18 55.9 35 0.0012 22.3 5.6 58 44-102 21-79 (92)
70 3vdz_A Ubiquitin-40S ribosomal 53.7 10 0.00035 24.9 2.9 58 50-111 49-106 (111)
71 2klc_A Ubiquilin-1; ubiquitin- 53.2 9.7 0.00033 24.6 2.7 73 28-112 23-96 (101)
72 3b1l_X E3 ubiquitin-protein li 58.3 2.8 9.7E-05 25.1 0.0 45 51-96 15-59 (76)
73 4a3p_A Ubiquitin carboxyl-term 52.6 29 0.00098 25.6 5.5 61 50-113 143-209 (217)
74 1v5o_A 1700011N24RIK protein; 52.4 12 0.00041 24.1 3.0 58 51-112 26-84 (102)
75 1wxv_A BAG-family molecular ch 52.4 22 0.00075 22.1 4.3 75 29-114 6-86 (92)
76 4ajy_B Transcription elongatio 51.5 43 0.0015 22.9 5.9 68 50-122 14-90 (118)
77 3m62_B UV excision repair prot 51.3 8.2 0.00028 25.2 2.1 61 51-115 16-76 (106)
78 1j8c_A Ubiquitin-like protein 51.0 17 0.00057 24.6 3.7 59 50-113 45-104 (125)
79 3rt3_B Ubiquitin-like protein 50.2 14 0.00047 25.3 3.2 59 51-112 17-76 (159)
80 1yfb_A Transition state regula 49.5 15 0.00052 22.0 2.9 21 64-84 28-48 (59)
81 3b08_A Polyubiquitin-C, ubiqui 49.3 34 0.0012 22.7 5.1 58 50-112 90-148 (152)
82 2kdi_A Ubiquitin, vacuolar pro 49.2 12 0.0004 24.8 2.7 59 51-114 24-83 (114)
83 2dzm_A FAS-associated factor 1 48.8 22 0.00076 23.3 3.9 65 51-118 23-87 (100)
84 2diu_A KIAA0430 protein; struc 48.0 17 0.00057 24.2 3.2 43 72-115 5-57 (96)
85 1wz0_A Ubiquitin-like protein 47.5 35 0.0012 22.4 4.8 47 49-96 37-83 (104)
86 2kjr_A CG11242; UBL, ubiquitin 47.3 54 0.0018 21.0 7.6 64 28-95 13-81 (95)
87 1v86_A DNA segment, CHR 7, way 47.1 11 0.00039 24.0 2.2 44 51-96 31-74 (95)
88 2d07_B Ubiquitin-like protein 46.3 32 0.0011 22.0 4.3 62 28-96 15-76 (93)
89 2kj6_A Tubulin folding cofacto 45.1 60 0.002 20.9 7.7 63 29-95 13-81 (97)
90 3b08_A Polyubiquitin-C, ubiqui 45.0 14 0.00048 24.7 2.5 59 50-113 14-73 (152)
91 2l66_A SSO7C4, transcriptional 44.9 21 0.00073 20.5 3.0 21 64-84 18-38 (53)
92 1uel_A HHR23B, UV excision rep 44.4 25 0.00085 22.1 3.6 61 50-115 14-78 (95)
93 1pqs_A Cell division control p 43.5 14 0.00049 23.4 2.2 23 51-73 6-28 (77)
94 3rt3_B Ubiquitin-like protein 43.0 42 0.0014 22.8 4.9 59 50-112 95-153 (159)
95 2kc2_A Talin-1, F1; FERM, adhe 41.2 39 0.0013 23.4 4.4 40 43-83 18-57 (128)
96 2daf_A FLJ35834 protein; hypot 41.1 45 0.0015 22.9 4.7 58 51-113 31-89 (118)
97 2kdb_A Homocysteine-responsive 41.0 26 0.00088 22.8 3.3 67 28-98 21-88 (99)
98 1q1o_A Cell division control p 40.9 11 0.00036 25.3 1.3 25 49-73 25-49 (98)
99 1mvf_D MAZE protein, PEMI-like 40.9 18 0.0006 22.5 2.4 50 64-119 19-75 (82)
100 1v6e_A Cytoskeleton-associated 40.7 66 0.0022 20.1 5.5 47 29-80 6-53 (95)
101 2e5i_A Heterogeneous nuclear r 40.7 24 0.00081 23.9 3.2 30 73-102 21-51 (124)
102 1wjn_A Tubulin-folding protein 40.6 38 0.0013 21.4 4.0 31 51-81 27-58 (97)
103 2i1s_A Hypothetical protein; m 40.0 63 0.0022 23.1 5.6 29 48-76 23-51 (188)
104 1x5p_A Negative elongation fac 38.6 31 0.0011 21.2 3.3 35 80-115 18-60 (97)
105 2eke_C Ubiquitin-like protein 38.5 43 0.0015 22.2 4.2 48 48-96 42-89 (106)
106 3u5e_m 60S ribosomal protein L 38.2 6.7 0.00023 26.5 0.0 45 51-96 15-59 (128)
107 2bz2_A Negative elongation fac 37.2 26 0.0009 23.0 2.9 35 80-115 42-84 (121)
108 3u30_A Ubiquitin, linear DI-ub 35.8 31 0.001 24.0 3.2 60 50-113 34-93 (172)
109 3l0w_B Monoubiquitinated proli 34.9 44 0.0015 23.6 4.0 59 51-113 15-73 (169)
110 2ylm_A Ubiquitin carboxyl-term 32.8 21 0.00071 30.0 2.2 51 48-98 353-410 (530)
111 3u5c_f 40S ribosomal protein S 32.4 9.4 0.00032 27.0 0.0 58 51-112 15-72 (152)
112 1sjr_A Polypyrimidine tract-bi 32.0 69 0.0024 22.8 4.6 42 73-114 42-94 (164)
113 3zzy_A Polypyrimidine tract-bi 31.5 38 0.0013 23.2 3.0 33 70-102 21-54 (130)
114 1wf9_A NPL4 family protein; be 30.7 13 0.00046 24.2 0.6 60 51-116 21-98 (107)
115 4efo_A Serine/threonine-protei 30.2 60 0.0021 21.3 3.7 37 48-84 25-61 (94)
116 1v2y_A 3300001G02RIK protein; 29.7 32 0.0011 22.8 2.3 65 52-119 23-102 (105)
117 2ylm_A Ubiquitin carboxyl-term 29.6 49 0.0017 27.8 3.9 61 51-112 151-217 (530)
118 3kyd_D Small ubiquitin-related 29.4 1E+02 0.0036 20.7 5.0 62 28-96 38-99 (115)
119 1t0y_A Tubulin folding cofacto 29.0 1.3E+02 0.0043 19.9 6.6 77 29-114 5-88 (122)
120 2wbr_A GW182, gawky, LD47780P; 27.9 89 0.003 20.2 4.2 38 77-114 7-53 (89)
121 4b6w_A Tubulin-specific chaper 27.8 61 0.0021 20.3 3.3 32 51-82 19-50 (86)
122 1x4c_A Splicing factor, argini 27.5 70 0.0024 20.0 3.7 24 91-114 30-60 (108)
123 4a20_A Ubiquitin-like protein 27.5 42 0.0014 21.7 2.6 55 53-112 38-95 (98)
124 2kzr_A Ubiquitin thioesterase 27.4 48 0.0016 20.4 2.8 58 53-113 17-78 (86)
125 3d2w_A TAR DNA-binding protein 27.4 61 0.0021 19.7 3.3 36 80-115 14-59 (89)
126 3q3f_A Ribonuclease/ubiquitin 27.3 40 0.0014 24.6 2.7 57 51-112 120-177 (189)
127 2pjh_A Protein NPL4, nuclear p 27.1 31 0.0011 21.5 1.8 29 52-80 19-48 (80)
128 3beg_B Splicing factor, argini 26.6 50 0.0017 21.1 2.8 36 80-115 19-62 (115)
129 2l32_A Small archaeal modifier 25.8 55 0.0019 20.1 2.8 36 51-91 15-50 (74)
130 3tix_A Ubiquitin-like protein 25.2 36 0.0012 25.7 2.1 60 29-96 56-115 (207)
131 2cqh_A IGF-II mRNA-binding pro 24.9 47 0.0016 20.0 2.3 16 53-68 16-31 (93)
132 2div_A TRNA selenocysteine ass 23.8 82 0.0028 19.0 3.4 10 105-114 53-62 (99)
133 3nyi_A FAT acid-binding protei 23.7 1.1E+02 0.0037 23.5 4.7 59 47-114 35-95 (297)
134 3s5o_A 4-hydroxy-2-oxoglutarat 23.3 72 0.0025 24.5 3.6 30 10-39 63-92 (307)
135 3pge_A SUMO-modified prolifera 23.2 53 0.0018 24.3 2.7 36 48-83 40-75 (200)
136 1pzx_A Hypothetical protein AP 22.5 1E+02 0.0035 23.5 4.3 57 47-114 35-92 (289)
137 3eb2_A Putative dihydrodipicol 22.2 53 0.0018 25.2 2.6 98 10-115 53-169 (300)
138 2e5j_A Methenyltetrahydrofolat 22.1 95 0.0032 18.8 3.4 11 104-114 56-66 (97)
139 3l21_A DHDPS, dihydrodipicolin 21.7 61 0.0021 24.9 2.9 100 10-114 64-179 (304)
140 2w1t_A Spovt, stage V sporulat 21.6 63 0.0022 23.6 2.8 20 64-83 20-39 (178)
141 2dzj_A Synaptic glycoprotein S 21.6 44 0.0015 21.0 1.8 54 52-109 29-85 (88)
142 1wf0_A TDP-43, TAR DNA-binding 21.6 39 0.0013 20.2 1.5 25 91-115 20-53 (88)
143 3cmm_A Ubiquitin-activating en 21.4 77 0.0026 28.9 3.9 49 50-100 921-980 (1015)
144 2yxg_A DHDPS, dihydrodipicolin 21.2 65 0.0022 24.5 2.9 98 10-114 49-165 (289)
145 3b4u_A Dihydrodipicolinate syn 21.0 89 0.0031 23.8 3.7 102 10-114 52-173 (294)
146 3h5d_A DHDPS, dihydrodipicolin 21.0 86 0.0029 24.2 3.6 99 10-113 56-171 (311)
147 3a5f_A Dihydrodipicolinate syn 20.8 68 0.0023 24.4 3.0 30 10-39 50-79 (291)
148 3flu_A DHDPS, dihydrodipicolin 20.8 68 0.0023 24.5 3.0 30 10-39 56-85 (297)
149 3e96_A Dihydrodipicolinate syn 20.8 66 0.0023 24.8 2.9 29 10-38 61-89 (316)
150 2rdm_A Response regulator rece 20.7 90 0.0031 19.0 3.2 54 18-73 68-124 (132)
151 2ehh_A DHDPS, dihydrodipicolin 20.7 68 0.0023 24.5 2.9 98 10-114 49-165 (294)
152 3qze_A DHDPS, dihydrodipicolin 20.6 68 0.0023 24.9 3.0 30 10-39 72-101 (314)
153 1ryj_A Unknown; beta/alpha pro 20.6 96 0.0033 18.4 3.1 36 51-91 18-53 (70)
154 3cpr_A Dihydrodipicolinate syn 20.6 67 0.0023 24.7 2.9 30 10-39 65-94 (304)
155 3tak_A DHDPS, dihydrodipicolin 20.4 70 0.0024 24.3 3.0 30 10-39 50-79 (291)
156 3fkr_A L-2-keto-3-deoxyarabona 20.4 69 0.0024 24.7 3.0 30 10-39 57-86 (309)
157 2ojp_A DHDPS, dihydrodipicolin 20.3 70 0.0024 24.3 3.0 30 10-39 50-79 (292)
158 1f6k_A N-acetylneuraminate lya 20.2 70 0.0024 24.3 2.9 30 10-39 53-82 (293)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=6.5e-54 Score=305.88 Aligned_cols=116 Identities=49% Similarity=0.964 Sum_probs=112.4
Q ss_pred CCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEE
Q 033214 3 KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFV 82 (125)
Q Consensus 3 ~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 82 (125)
|+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||.++||+||+.+||++|+|+++++|||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214 83 KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118 (125)
Q Consensus 83 nn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 118 (125)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=4.9e-54 Score=309.09 Aligned_cols=117 Identities=48% Similarity=0.875 Sum_probs=114.2
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEE
Q 033214 2 GKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVF 81 (125)
Q Consensus 2 ~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~ 81 (125)
++++.||+++|||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||+||+|++++|||||
T Consensus 8 ~~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~ 87 (125)
T 3m95_A 8 GMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 87 (125)
T ss_dssp -CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred cceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214 82 VKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118 (125)
Q Consensus 82 Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 118 (125)
|||++|++|++||+||++|||+||||||+||+++|||
T Consensus 88 Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG 124 (125)
T 3m95_A 88 VNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124 (125)
T ss_dssp BTTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred ECCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence 9999999999999999999999999999999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=5.6e-53 Score=301.44 Aligned_cols=114 Identities=42% Similarity=0.819 Sum_probs=110.8
Q ss_pred CCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC
Q 033214 5 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD 84 (125)
Q Consensus 5 ~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn 84 (125)
++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||.++||+||+.+||+||+|+++++|||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214 85 TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118 (125)
Q Consensus 85 ~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 118 (125)
.+|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=1.7e-51 Score=297.69 Aligned_cols=119 Identities=44% Similarity=0.758 Sum_probs=114.6
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEE
Q 033214 1 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALF 79 (125)
Q Consensus 1 m~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slf 79 (125)
|+++.+||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||.++||++|+.+||+||+|+++++||
T Consensus 6 ~~~m~~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alF 85 (130)
T 2zjd_A 6 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFF 85 (130)
T ss_dssp -CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEE
T ss_pred ccchhHHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEE
Confidence 344459999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred E-EEcCccCCccchHHHHHhHcCCCCceEEEEeccccccCC
Q 033214 80 V-FVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119 (125)
Q Consensus 80 l-~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 119 (125)
| ||||.+|++|++||+||++|||+||||||+||+++|||+
T Consensus 86 l~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~ 126 (130)
T 2zjd_A 86 LLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126 (130)
T ss_dssp EEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHH
T ss_pred EEEECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCC
Confidence 9 999999999999999999999999999999999999996
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=5.6e-51 Score=290.15 Aligned_cols=116 Identities=49% Similarity=0.875 Sum_probs=113.2
Q ss_pred CCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214 4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK 83 (125)
Q Consensus 4 ~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 83 (125)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus 2 ~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn 81 (117)
T 1eo6_A 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD 81 (117)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred CcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEEC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccchHHHHHhHcCCCCceEEEEeccccccCC
Q 033214 84 DTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119 (125)
Q Consensus 84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 119 (125)
|.+|++|++||+||++|||+||||||+||+++|||+
T Consensus 82 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 82 KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 999999999999999999999999999999999994
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=8.7e-47 Score=265.85 Aligned_cols=110 Identities=47% Similarity=0.869 Sum_probs=107.4
Q ss_pred CCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214 4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK 83 (125)
Q Consensus 4 ~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 83 (125)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 84 DTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
|.+|++|++||+||++|+|+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=1.4e-34 Score=197.79 Aligned_cols=86 Identities=26% Similarity=0.464 Sum_probs=81.0
Q ss_pred cEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEE
Q 033214 32 PVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMC 110 (125)
Q Consensus 32 pVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~ 110 (125)
.|+|--.+.+++|.|+++||+||+++||++|+.+|||||+|+++++||||||| ++|++|++||+||++|| +||||||+
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~ 83 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH 83 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence 36665556689999999999999999999999999999999999999999999 78999999999999999 99999999
Q ss_pred eccccccC
Q 033214 111 YSSEKTFG 118 (125)
Q Consensus 111 Ys~~~~fG 118 (125)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=4.3e-34 Score=197.06 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=80.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGf 106 (125)
|+||+|++++. +++|.|+++||+||+++||++|+.+|||||+++ +||||||| ++|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999876 679999999999999999999999999999998 99999999 999999999999999998 999
Q ss_pred EEEEeccccccC
Q 033214 107 LYMCYSSEKTFG 118 (125)
Q Consensus 107 Lyi~Ys~~~~fG 118 (125)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=2.7e-32 Score=186.53 Aligned_cols=85 Identities=14% Similarity=0.333 Sum_probs=67.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGf 106 (125)
|.||-|-. .+-+++|.|+++||+||+++||++|+.+|||||++ ++||||||| ++|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 34444443 44589999999999999999999999999999999 699999999 79999999999999999 7999
Q ss_pred EEEEeccccccC
Q 033214 107 LYMCYSSEKTFG 118 (125)
Q Consensus 107 Lyi~Ys~~~~fG 118 (125)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.26 E-value=0.044 Score=43.69 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEeecC---CCchHhHHHHHhhhhC-CCCCCeEEEEEcCc
Q 033214 11 FTFEQRLEESREIIAKYPDRVPVIAERYSKA-DLPDMEKKKFLVPR---DMSVGQFIHILSSRLH-LTPGKALFVFVKDT 85 (125)
Q Consensus 11 ~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~L~-l~~~~slfl~Vnn~ 85 (125)
+.|++=..-..++....+.+|||.|--.... ..+.++ -.++. ..|++++..- +..+. +-+..+..+++.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4444444445566655578999999765332 122222 11221 2266665410 22222 22334468889998
Q ss_pred cCCccchHHHHHhHcCCCCceEEEEec
Q 033214 86 LPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 86 lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
.|+.++.|..||+.+.-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=94.88 E-value=0.078 Score=41.84 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=48.7
Q ss_pred CcccEEEEccCCCCCCCCccceEeec---CCCchHhHHHHHhhhhC--CC---CCCeEEEEEcCccCCccchHHHHHhHc
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVP---RDMSVGQFIHILSSRLH--LT---PGKALFVFVKDTLPQTATLMDSVYESF 100 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~--l~---~~~slfl~Vnn~lp~~~~~m~~lY~~~ 100 (125)
.+|||.|-.. .++-|.++..-=-+. ...|++++... .|. .+ ......+++.+-.++.++.|.+||+.+
T Consensus 183 r~IPvRiY~~-~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l 258 (275)
T 4gdk_B 183 RYIPFRIYQT-TTERPFIQKLFRPVAADGQLHTLGDLLKE---VCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHL 258 (275)
T ss_dssp SSCCEEEECT-TSSSSEECCCCCSBCTTSCBCBHHHHHHH---HCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHS
T ss_pred ccceEEEEec-CCCCCccccCcCCcCCCCCcccHHHHHHH---hcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhc
Confidence 5799999642 122222222100011 23477776544 332 11 113455677777789999999999999
Q ss_pred CCCCceEEEEec
Q 033214 101 KDEDGFLYMCYS 112 (125)
Q Consensus 101 kd~DGfLyi~Ys 112 (125)
...||||||.-.
T Consensus 259 ~y~DgFLhI~v~ 270 (275)
T 4gdk_B 259 SYPDNFLHISII 270 (275)
T ss_dssp CCTTSCEEEEEE
T ss_pred cCCCceEEEEEE
Confidence 999999999764
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.47 E-value=0.055 Score=42.68 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=47.7
Q ss_pred CCCcccEEEEccCCCCCCCCccceEeec---CCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCC
Q 033214 27 YPDRVPVIAERYSKADLPDMEKKKFLVP---RDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE 103 (125)
Q Consensus 27 yp~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~ 103 (125)
-.-.|||.|-... + |.++. +|+ ...|++++.. ..+..- .....+++.+..++.++.|.+||+.+.-.
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 4578999997532 2 22221 233 3667777654 333210 12344677787789999999999999999
Q ss_pred CceEEEE
Q 033214 104 DGFLYMC 110 (125)
Q Consensus 104 DGfLyi~ 110 (125)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.08 E-value=0.08 Score=34.84 Aligned_cols=47 Identities=9% Similarity=0.189 Sum_probs=39.0
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHH
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMD 94 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~ 94 (125)
.-+|.|+.+.+|.+++..-|++-+++++.+|.|..++--..+++++.
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~ 67 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQ 67 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChh
Confidence 34899999999999999999999999999999999885444444443
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.78 E-value=3.9 Score=25.57 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=38.4
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
..|.|.++.+++.++....++.+++++.--|+| ++.....+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 368899999999999999999999988655655 55555667888887
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.94 E-value=4.7 Score=24.85 Aligned_cols=75 Identities=5% Similarity=0.005 Sum_probs=49.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGf 106 (125)
|..+-|.|.... ++ ...+-|+.+.||+++...|..+.+++++.- -|+.+......+.+|++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPD-GG-----SYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETT-TE-----EEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCC-CC-----EEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence 455666665432 11 224568999999999999999999987654 444566555667788765 22 3447
Q ss_pred EEEEecc
Q 033214 107 LYMCYSS 113 (125)
Q Consensus 107 Lyi~Ys~ 113 (125)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7777643
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.53 E-value=3.1 Score=27.08 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=42.5
Q ss_pred eecCCCchHhHHHHHhhhhCCCCCCeEEEEEc---C-ccCCccchHHHHHhHcCCCCceEEE
Q 033214 52 LVPRDMSVGQFIHILSSRLHLTPGKALFVFVK---D-TLPQTATLMDSVYESFKDEDGFLYM 109 (125)
Q Consensus 52 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---n-~lp~~~~~m~~lY~~~kd~DGfLyi 109 (125)
-||.+.+++++...|++||+++++....-|=. + ..+..|+.|...++.=+ +|-|-+
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL 78 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL 78 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence 49999999999999999999987665555544 2 34778889999888765 444443
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.48 E-value=2.6 Score=25.62 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=42.3
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
.+-|..+.||+++...+..+.++++++--++ .++.....+.+++++- -+ ++..|++...
T Consensus 17 ~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~--i~-~~~~i~l~~~ 75 (79)
T 2uyz_B 17 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELG--ME-EEDVIEVYQE 75 (79)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence 4679999999999999999999998765544 4555556777888751 11 3446776653
No 18
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.91 E-value=6.2 Score=26.64 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+++|-|.|.-..+ ....|.|.++.+++.++....++.++++..--|+| +......+.|..++
T Consensus 24 ~~~I~IkVk~~~g------~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADG------AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTS------CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3556666643221 12368899999999999999999999988656665 55445667888888
No 19
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.43 E-value=4.1 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=43.2
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
.+-|.++.||+++...|..+-++++++- -|..+......+.+|++ |.-. ++..|+|.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 3568999999999999999999987654 34445655566778887 3322 3457888883
No 20
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=80.18 E-value=10 Score=25.00 Aligned_cols=86 Identities=8% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHhhCCCcccEEEEccCCCCCCC--Cccce--EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHh
Q 033214 23 IIAKYPDRVPVIAERYSKADLPD--MEKKK--FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYE 98 (125)
Q Consensus 23 ~r~kyp~~ipVIvE~~~~~~~p~--L~k~K--flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~ 98 (125)
..+.+|..|-|.|.......-|. |..+. +-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC--
Confidence 56678998998886432111011 33333 4599999999999999999999876544 44466545667788764
Q ss_pred HcCC-CCceEEEEecc
Q 033214 99 SFKD-EDGFLYMCYSS 113 (125)
Q Consensus 99 ~~kd-~DGfLyi~Ys~ 113 (125)
.- ++..|+|....
T Consensus 95 --~i~~g~~i~lv~rl 108 (115)
T 1we7_A 95 --NMASGAVIHLALKE 108 (115)
T ss_dssp --TCCSSCEEEEEECC
T ss_pred --CCCCCCEEEEEEEc
Confidence 22 34467776543
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.01 E-value=4.3 Score=25.17 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=42.6
Q ss_pred eE-eecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KF-LVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+ -|+.+.||+++...|..+.++++++-- |+.+......+.+|++. .- .++..|++....
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~--~i-~~g~~i~l~~~~ 82 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY--DV-GLNDIIQLLVRP 82 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH--TC-CTTCEEEEEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC--CC-CCCCEEEEEEeC
Confidence 35 389999999999999999999877544 44466555667788765 11 135578877643
No 22
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=78.52 E-value=5.8 Score=25.46 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=50.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceE
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFL 107 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfL 107 (125)
+..+-|.|.-.. ++ ...+-|..+.||+++...|..+.++++.+--++| ++.....+.+++++- -+ ++..|
T Consensus 19 ~~~m~I~Vk~~~-g~-----~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I 88 (97)
T 1wyw_B 19 GEYIKLKVIGQD-SS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVI 88 (97)
T ss_dssp CCEEEEEEECTT-CC-----EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEE
T ss_pred CCcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEE
Confidence 456667774322 21 2346799999999999999999999987655444 555556777888751 21 34477
Q ss_pred EEEec
Q 033214 108 YMCYS 112 (125)
Q Consensus 108 yi~Ys 112 (125)
++...
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77654
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=75.80 E-value=2.6 Score=25.67 Aligned_cols=60 Identities=5% Similarity=0.093 Sum_probs=42.7
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- .++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r~ 76 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLRL 76 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEEC
Confidence 4569999999999999999999987653 444576666667777663 11 245577777643
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=75.69 E-value=2.9 Score=24.78 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=40.9
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998764 4555566555566676553 22 3446776653
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=75.32 E-value=4.1 Score=25.38 Aligned_cols=75 Identities=13% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceE
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFL 107 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfL 107 (125)
|..+-|.|.-.. ++ ...+-|..+.||+++...|..+.++++++-- |+.++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETT-CC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCeECCCCCCHHHc----CCCCcEE
Confidence 445566664322 21 2235689999999999999999999876544 44466666667787763 2235577
Q ss_pred EEEecc
Q 033214 108 YMCYSS 113 (125)
Q Consensus 108 yi~Ys~ 113 (125)
++....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 777654
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=75.01 E-value=5 Score=25.14 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=42.9
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 3558999999999999999999988765444 4555556677887752 22 34578887653
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.41 E-value=3.3 Score=25.00 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS 95 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~ 95 (125)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 35689999999999999999999876533 4446655555667665
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=73.56 E-value=3.3 Score=24.54 Aligned_cols=58 Identities=5% Similarity=0.075 Sum_probs=40.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998764 4455566544556666543 22 3446777653
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=73.42 E-value=2.5 Score=25.81 Aligned_cols=60 Identities=7% Similarity=0.116 Sum_probs=42.7
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.++++++ .-|+.+......+.+|++. .- .++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTTT--TC-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHHC--CC-CCCCEEEEEEec
Confidence 356899999999999999999998865 4455566656666677663 11 245577777643
No 30
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=72.98 E-value=17 Score=23.91 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=50.3
Q ss_pred HHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHh
Q 033214 19 ESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYE 98 (125)
Q Consensus 19 e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~ 98 (125)
-+..+-...|.+|-|.|.-.. + ++..+-|.++.||++|...|-.+.++++++-.-.| +......+.+|+
T Consensus 10 ~~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~---- 78 (93)
T 3plu_A 10 HSSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE---- 78 (93)
T ss_dssp ----------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----
T ss_pred ccccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----
Confidence 345556667888888885432 2 23356799999999999999999999987655555 556666667774
Q ss_pred HcCCCC-ceEEEEe
Q 033214 99 SFKDED-GFLYMCY 111 (125)
Q Consensus 99 ~~kd~D-GfLyi~Y 111 (125)
.|.=.| --|.+-|
T Consensus 79 dY~I~dgstLhL~~ 92 (93)
T 3plu_A 79 DYEVHDQTNLELYY 92 (93)
T ss_dssp GGTCCTTCEEEEEE
T ss_pred HcCCCCCCEEEEEe
Confidence 344333 3666665
No 31
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=72.89 E-value=10 Score=24.84 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=52.6
Q ss_pred HHHhhCCCcccEEEEccC--CCCCCCCccceEeecC-CCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHh
Q 033214 22 EIIAKYPDRVPVIAERYS--KADLPDMEKKKFLVPR-DMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYE 98 (125)
Q Consensus 22 ~~r~kyp~~ipVIvE~~~--~~~~p~L~k~Kflvp~-~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~ 98 (125)
....++|.-|.|.|.-.. .++ ...+-|+. +.||+++...|....+++++.-- |+.++.+...+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~~~~g~-----~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPNENDGQ-----FMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY-- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTTCSSSC-----CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT--
T ss_pred HHHHhCCCcEEEEEEecccCCCc-----EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC--
Confidence 344668888888885321 121 22356898 99999999999999999876533 33455555556666543
Q ss_pred HcCC-CCceEEEEec
Q 033214 99 SFKD-EDGFLYMCYS 112 (125)
Q Consensus 99 ~~kd-~DGfLyi~Ys 112 (125)
.- ++..|++...
T Consensus 91 --~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 --NVGAGEILTLSLR 103 (111)
T ss_dssp --TCSSSCEEEEECS
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3446777654
No 32
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=72.35 E-value=5.3 Score=24.74 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=42.4
Q ss_pred CCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214 27 YPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS 95 (125)
Q Consensus 27 yp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~ 95 (125)
-|..+.|.|.... ++ ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++
T Consensus 14 ~~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-SC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCcHHH
Confidence 3566677775422 21 1235689999999999999999999876544 4446666666777765
No 33
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.21 E-value=9.4 Score=24.74 Aligned_cols=61 Identities=11% Similarity=0.243 Sum_probs=43.5
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
.+-|+.+.||++|...|..+.+++++. .-|+.+......+.+|+++ .-+ ++..|+|.....
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~--gi~-~g~~i~l~~~~~ 90 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH--TCC-TTEEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc--CCC-CCCEEEEEEcCC
Confidence 456899999999999999999998765 4455566656667788765 111 344777776543
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=69.92 E-value=7.9 Score=24.59 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=46.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceE
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFL 107 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfL 107 (125)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++- -|+.+......+.+|++. .-+ ++..|
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y--~I~-~gstI 84 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQC--GVE-ALTTL 84 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHH--TCC-SSCEE
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHC--CCC-CCCEE
Confidence 3456677754 1 1234568999999999999999999987653 444566555667788765 111 34467
Q ss_pred EEEe
Q 033214 108 YMCY 111 (125)
Q Consensus 108 yi~Y 111 (125)
++..
T Consensus 85 ~lv~ 88 (93)
T 2l7r_A 85 EVAG 88 (93)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=69.68 E-value=7 Score=25.35 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=49.3
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEE
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLY 108 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLy 108 (125)
+.+-|.|.... + +..+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .-+ ++..|+
T Consensus 21 ~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~y--gI~-~gstI~ 89 (100)
T 1yqb_A 21 HLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTVH 89 (100)
T ss_dssp TEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHH--TCC-TTCEEE
T ss_pred CeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHC--CCC-CCCEEE
Confidence 45566664421 1 22456899999999999999999998764 4445566656667788765 112 344777
Q ss_pred EEecc
Q 033214 109 MCYSS 113 (125)
Q Consensus 109 i~Ys~ 113 (125)
+....
T Consensus 90 l~~r~ 94 (100)
T 1yqb_A 90 LVIKR 94 (100)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 76654
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=69.65 E-value=9.7 Score=24.35 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=48.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCcc-chHHHHHhHcCCCCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTA-TLMDSVYESFKDEDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~-~~m~~lY~~~kd~DGf 106 (125)
+..+.|.|.-.. . ...+-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++.= -+ ++..
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~yg--I~-~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEYG--IT-EFSE 81 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHHT--CC-TTEE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHCC--CC-CCCE
Confidence 455667775321 1 223459999999999999999999987653 444566555556 7887641 11 4457
Q ss_pred EEEEecc
Q 033214 107 LYMCYSS 113 (125)
Q Consensus 107 Lyi~Ys~ 113 (125)
|+|....
T Consensus 82 l~lv~r~ 88 (94)
T 2kan_A 82 IVVFLKS 88 (94)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7776654
No 37
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=69.47 E-value=4.8 Score=24.38 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=41.0
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEe
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY 111 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Y 111 (125)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- - .++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~--i-~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--L-KPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--C-CTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 3569999999999999999999987654 4455665556677777631 1 1344777654
No 38
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.79 E-value=5.8 Score=26.04 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=21.0
Q ss_pred EeecCCCchHhHHHHHhhhhCCC
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLT 73 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~ 73 (125)
-.||.+.+++++..-|+.||+++
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHHHHhccc
Confidence 35999999999999999999995
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=68.78 E-value=4.2 Score=25.60 Aligned_cols=60 Identities=5% Similarity=0.100 Sum_probs=43.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|+++ .-+ ++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CCC-CCCEEEEEEEc
Confidence 356899999999999999999998765 4555577666667777764 112 45578887754
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=68.46 E-value=5.5 Score=23.74 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=39.8
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEe
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCY 111 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 111 (125)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.++++. +- ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 456899999999999999999998765 4444566555556666553 22 344676654
No 41
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=68.27 E-value=18 Score=24.22 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=42.7
Q ss_pred cccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214 30 RVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS 95 (125)
Q Consensus 30 ~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~ 95 (125)
++-|.||-...+. ....+-|.++.||+++...|-.+.++++..-- ++.+..+...+.+|++
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 3446666543222 23345699999999999999999999986655 4446677777778765
No 42
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=68.22 E-value=3.7 Score=25.25 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=40.9
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEe
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY 111 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Y 111 (125)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 4569999999999999999999987643 344466656667777764 122 345777654
No 43
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=68.00 E-value=13 Score=24.53 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=38.1
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
..|.|.++.+++.++..-.++.+++.+.--|+| ++....+++|..+|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999987544554 66556677788887
No 44
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.65 E-value=6.4 Score=24.71 Aligned_cols=57 Identities=7% Similarity=0.007 Sum_probs=39.7
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCcc-CCccchHHHHHhHcCCCCceEEEEe
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTL-PQTATLMDSVYESFKDEDGFLYMCY 111 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~l-p~~~~~m~~lY~~~kd~DGfLyi~Y 111 (125)
+-|+.+.||+++...|..+.++++++ .-|+.++.. ...+.+|++.= -+ ++..|++..
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv~ 82 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQCQ--IV-PTSDIQLEV 82 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHHT--CC-TTSCEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHcC--CC-CCCEEEEEE
Confidence 45899999999999999999998765 344456654 66777887641 11 344566643
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=67.01 E-value=8.7 Score=24.03 Aligned_cols=56 Identities=5% Similarity=0.091 Sum_probs=39.4
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEE
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMC 110 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~ 110 (125)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 3559999999999999999999987653 344466656667777663 22 34466654
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.11 E-value=10 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.232 Sum_probs=40.4
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCC-CceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE-DGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|..+.+++++.--.+ .+......+.+|++. .-. +..|++...
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGSTVHVVVR 88 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEEEECCBC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCEEEEEEe
Confidence 4568999999999999999999987654433 455555667788773 333 335665543
No 47
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=64.33 E-value=5.4 Score=25.01 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=38.0
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEe
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCY 111 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 111 (125)
+-|+.+.||+++...|....+++++.- -|+.++.....+.+|+++ .- ++..|++..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 458999999999999999999987543 334566555556666543 22 334666654
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=64.13 E-value=6.3 Score=25.06 Aligned_cols=60 Identities=5% Similarity=0.067 Sum_probs=42.7
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEeccc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSE 114 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 114 (125)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .- ++..|++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLR 74 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHHc----CCCCCCEEEEEEeCC
Confidence 456889999999999999999998765 4445566555556677653 22 455788777643
No 49
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.03 E-value=11 Score=24.97 Aligned_cols=45 Identities=4% Similarity=0.043 Sum_probs=35.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS 95 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~ 95 (125)
..-|+.+.||+++...|-.+.++++.+- -|..+..+...+.+|++
T Consensus 33 ~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 33 LLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 3448999999999999999999987654 44456666677888876
No 50
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.32 E-value=13 Score=23.28 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=39.4
Q ss_pred ecCCCchHhHHHHHhhhh--CCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 53 VPRDMSVGQFIHILSSRL--HLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 53 vp~~~tv~~~~~~lRk~L--~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
|+.+.||+++...|..+. ++++++-- |+.+......+.+|++....-+ ++..|+|...
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~~ 85 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVCN 85 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CSEEEEEECC
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CCCEEEEEeC
Confidence 559999999999999998 88765533 3345666667778887542222 3446776543
No 51
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=63.12 E-value=20 Score=22.78 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=32.2
Q ss_pred ecCCCchHhHHHHH-hhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 53 VPRDMSVGQFIHIL-SSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 53 vp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
++++.||+++...| ..+-++++++--.+ .++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHHc
Confidence 34899999999999 77778887764444 466666777888854
No 52
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=62.89 E-value=15 Score=23.59 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
...|.|.++.+++.++....++.++++..--|+| ++....++.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3468899999999999999999999987666665 44334555666654
No 53
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=62.51 E-value=6.1 Score=24.78 Aligned_cols=60 Identities=5% Similarity=0.023 Sum_probs=42.1
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- .++..|++....
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~--~i-~~g~~l~l~~rl 73 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KI-LGGSVLHLVLAL 73 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTTT--TC-CTTCEEEEECBC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHHc--CC-CCCCEEEEEEEC
Confidence 34589999999999999999999876543 44466666667777764 11 135577777543
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=61.91 E-value=6.2 Score=23.71 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=38.4
Q ss_pred Ee-ecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEe
Q 033214 51 FL-VPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCY 111 (125)
Q Consensus 51 fl-vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 111 (125)
+- |+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 44 8899999999999999999987654 344466544556666543 22 344666654
No 55
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=61.48 E-value=12 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=36.0
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
...|.|.++.+++.++....++.+++++.--|+|=+..+ .++.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 346889999999999999999999998776666644443 444555443
No 56
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.29 E-value=22 Score=22.97 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=42.5
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEeccc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSE 114 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 114 (125)
.+-|+.+.||+++...|..+.+++++.--.+ .++.....+.+|++. .- ++..|++.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 3569999999999999999999987654444 456555666777653 22 355788876543
No 57
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=61.08 E-value=27 Score=23.81 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=46.3
Q ss_pred ecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC------CCceEEEEeccccccC
Q 033214 53 VPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD------EDGFLYMCYSSEKTFG 118 (125)
Q Consensus 53 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd------~DGfLyi~Ys~~~~fG 118 (125)
|..+.||+++...|..+.++++.+-- |+.++.....+.+|++ |.-. + .+--|++......+|=
T Consensus 18 v~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCBC
T ss_pred eCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCcee
Confidence 89999999999999999999876533 3456666677789987 3322 2 3557899888555553
No 58
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=60.49 E-value=37 Score=23.16 Aligned_cols=84 Identities=12% Similarity=0.225 Sum_probs=57.9
Q ss_pred cccEEEEccCCCCCC-CCccceEe-ecCCCchHhHHHHHhhhhCCCC------------------CCeEEEEEc-C--cc
Q 033214 30 RVPVIAERYSKADLP-DMEKKKFL-VPRDMSVGQFIHILSSRLHLTP------------------GKALFVFVK-D--TL 86 (125)
Q Consensus 30 ~ipVIvE~~~~~~~p-~L~k~Kfl-vp~~~tv~~~~~~lRk~L~l~~------------------~~slfl~Vn-n--~l 86 (125)
-|-++..++|..-.. .....+|+ -+.+.||.++-..|.-||.|+. +-.||+.-+ + .+
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 355677777743111 12355666 7899999999999988887651 223444433 2 36
Q ss_pred CCccchHHHHHhHcCCCCceEEEEecc
Q 033214 87 PQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 87 p~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+.+++|.++-++|=-.+-=|-|-||-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 789999999999995567888888874
No 59
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=60.47 E-value=7 Score=25.01 Aligned_cols=73 Identities=4% Similarity=0.100 Sum_probs=46.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGf 106 (125)
+..+-|.|.... ++ ...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..
T Consensus 20 ~~~m~I~Vk~~~-g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLT-GK-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETT-CC-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 345666664432 21 224568999999999999999999987654 444566655666777653 22 3446
Q ss_pred EEEEe
Q 033214 107 LYMCY 111 (125)
Q Consensus 107 Lyi~Y 111 (125)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 60
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=60.30 E-value=25 Score=21.14 Aligned_cols=76 Identities=9% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhh---hCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-C
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSR---LHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-E 103 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~ 103 (125)
|..+-|.|....+. ...+-|+.+.||+++...|..+ -+++++. .-|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHH----cCCCC
Confidence 55667777543221 1235689999999999999998 5676654 444456655566667765 333 4
Q ss_pred CceEEEEeccc
Q 033214 104 DGFLYMCYSSE 114 (125)
Q Consensus 104 DGfLyi~Ys~~ 114 (125)
+..|++..+..
T Consensus 72 g~~i~l~~~~~ 82 (85)
T 2wyq_A 72 KNFVVVMVTKT 82 (85)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEcCC
Confidence 55788876544
No 61
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=60.25 E-value=6.5 Score=27.26 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=39.4
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCC-CeEEEEEc--Cc-----cCCccchHHHHHhHcC
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPG-KALFVFVK--DT-----LPQTATLMDSVYESFK 101 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn--n~-----lp~~~~~m~~lY~~~k 101 (125)
.-|.|.+++++++|...|-+.+|++++ ..++..++ |. ++.++.+|+..+....
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~ 118 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS 118 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHH
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhh
Confidence 358899999999999999999999764 56777766 32 3445566766666543
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.54 E-value=6 Score=25.78 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=39.9
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
-.|-|.|.. .+... .+-|+.+.||+++...|..+.+++++.--.+ .++.....+.+|++.
T Consensus 27 m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 27 MSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESY 86 (101)
T ss_dssp --CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTT
T ss_pred cEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHC
Confidence 446677753 22222 2458899999999999999999987654333 366656666677653
No 63
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=59.02 E-value=34 Score=22.23 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=44.1
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCCCeEEE-EEcC----ccCCccchHH---HHHhHcCCCCceEEE
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFV-FVKD----TLPQTATLMD---SVYESFKDEDGFLYM 109 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vnn----~lp~~~~~m~---~lY~~~kd~DGfLyi 109 (125)
..+.||.+.++.++...||.+.++...+.+-+ |++. ...+.|+.|. ++|+-.++..=.||+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 36779999999999999999999987777766 4553 3457777664 566677644434444
No 64
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=58.85 E-value=12 Score=24.42 Aligned_cols=58 Identities=5% Similarity=0.087 Sum_probs=40.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|..+.+++++.- -|+.+......+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987654 444566555556676653 22 3446777653
No 65
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.82 E-value=30 Score=22.36 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=36.8
Q ss_pred CCchHhHHHHHhhhh--CCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 56 DMSVGQFIHILSSRL--HLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 56 ~~tv~~~~~~lRk~L--~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
+.||+++...|..+. ++++++..=|+.+......+.+|++. .-+ ++-.|++.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y--~i~-~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY--GIQ-PGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH--TCC-TTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc--CCC-CCCEEEEEeCCC
Confidence 599999999999999 89877612334455445667788765 112 334677765443
No 66
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.12 E-value=8.4 Score=24.12 Aligned_cols=58 Identities=3% Similarity=0.069 Sum_probs=39.2
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|..+.+++++. .-|+.+......+.+|++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGG-CEEEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 345899999999999999999998754 3444566544556666553 22 3446776553
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=56.91 E-value=21 Score=22.34 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=40.3
Q ss_pred eecCCCchHhHHHHHhhhhCCCCCCeEEEE--EcCccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 52 LVPRDMSVGQFIHILSSRLHLTPGKALFVF--VKDTLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 52 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~--Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
-|+.+.||++|...|..+.+++++.--.+. .+......+.+|+++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468999999999999999999876544330 455555666788774 112 344677755433
No 68
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=56.15 E-value=16 Score=23.57 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=35.7
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
..|.|.++.+++.++..+.++.++++..--|+| +......+.|..++
T Consensus 20 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 66 (94)
T 2io1_B 20 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 66 (94)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999987655555 44334455666554
No 69
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=55.87 E-value=35 Score=22.33 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCC
Q 033214 44 PDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKD 102 (125)
Q Consensus 44 p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd 102 (125)
|.|.-+..-||++.-+.-+..+--...++++..+ -+.-|+ .=..++++-|++|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 4566677779999999999999999999988765 444554 556888999999999964
No 70
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=53.66 E-value=10 Score=24.94 Aligned_cols=58 Identities=5% Similarity=0.122 Sum_probs=40.5
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEe
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY 111 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Y 111 (125)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|+++ . - .++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~-g-I-~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY-N-I-QKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT-T-C-CTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHC-C-C-CCCCEEEEEE
Confidence 4569999999999999999999987653 444566655666677663 1 1 1344676654
No 71
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=53.23 E-value=9.7 Score=24.63 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=49.2
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCce
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGF 106 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGf 106 (125)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .- ++..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCE
Confidence 57788888543 22 23456999999999999999999998765 4444566555566676653 33 3446
Q ss_pred EEEEec
Q 033214 107 LYMCYS 112 (125)
Q Consensus 107 Lyi~Ys 112 (125)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 777654
No 72
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=58.26 E-value=2.8 Score=25.13 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=31.4
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+-|+.+.||+++...|..+.+++++.--.+ .++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNC 59 (76)
Confidence 448889999999999999999887654433 344444455566553
No 73
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=52.63 E-value=29 Score=25.59 Aligned_cols=61 Identities=5% Similarity=0.010 Sum_probs=41.9
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCC--CeEEEEEc-C--c-cCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPG--KALFVFVK-D--T-LPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~--~slfl~Vn-n--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
...+++..|+.++...+++.++++++ -.|+.+-+ + . +-..+.+|.++ .-.+|.-|.|-+..
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~---~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA---GLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH---TCCTTCEEEEEECC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh---CCCCCCEEEEEEec
Confidence 46789999999999999999999875 45665543 3 2 33445677765 23345566666553
No 74
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.43 E-value=12 Score=24.12 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=38.7
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCcc-chHHHHHhHcCCCCceEEEEec
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTA-TLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~-~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
.-|+.+.||++|...|..+.++++++-- |+.++.....+ .+|++. .-+ ++..|+|.-.
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~~ 84 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQK 84 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECBC
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEEC
Confidence 4489999999999999999999876433 34455444444 577764 122 3446776643
No 75
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.41 E-value=22 Score=22.11 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=44.8
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCC-----CchHhHHHHHhhhhCCCCCCeEEEEEcCccCCc-cchHHHHHhHcCC
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRD-----MSVGQFIHILSSRLHLTPGKALFVFVKDTLPQT-ATLMDSVYESFKD 102 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~-----~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~-~~~m~~lY~~~kd 102 (125)
..+-|.|.. . ++ ...+-|+.+ .||++|...|..+.+++++.-- |+.++..... +.+|+++ . -+
T Consensus 6 ~~~~v~Vk~-~-~~-----~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~-~-i~- 74 (92)
T 1wxv_A 6 SGLTVTVTH-S-NE-----KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL-G-IQ- 74 (92)
T ss_dssp SSEEEEEEC-S-SS-----EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH-T-CC-
T ss_pred CeEEEEEEE-C-CE-----EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC-C-CC-
Confidence 456666643 2 11 123457775 9999999999999999876543 3345543333 5578774 1 12
Q ss_pred CCceEEEEeccc
Q 033214 103 EDGFLYMCYSSE 114 (125)
Q Consensus 103 ~DGfLyi~Ys~~ 114 (125)
++..|+|.-+..
T Consensus 75 ~g~~i~l~~~~~ 86 (92)
T 1wxv_A 75 DGCRVMLIGKKN 86 (92)
T ss_dssp SSEEEEEESCCS
T ss_pred CCCEEEEEecCC
Confidence 334677655443
No 76
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=51.50 E-value=43 Score=22.91 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=50.3
Q ss_pred eEe-ecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-C-------CceEEEEeccccccCCc
Q 033214 50 KFL-VPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-E-------DGFLYMCYSSEKTFGYE 120 (125)
Q Consensus 50 Kfl-vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~-------DGfLyi~Ys~~~~fG~~ 120 (125)
-|+ |..+.||.++...|..+.++++.+--.+ .++.+...+.||++ |+= . +--|++.+...+.|..+
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE~l 88 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFEAL 88 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCCCC
T ss_pred EEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCccce
Confidence 354 8899999999999999999998664444 45566677778775 221 3 66999999988777765
Q ss_pred cc
Q 033214 121 RI 122 (125)
Q Consensus 121 ~~ 122 (125)
++
T Consensus 89 ~i 90 (118)
T 4ajy_B 89 CI 90 (118)
T ss_dssp CB
T ss_pred EE
Confidence 44
No 77
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=51.25 E-value=8.2 Score=25.22 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=42.4
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecccc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEK 115 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 115 (125)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|+++ .-+ ++..|++..+...
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~~ 76 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIK-LIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQKK 76 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCE-EEETTEECCTTSBTTTT--TCC-TTCEEEEECCC--
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEE-EEECCEECCCcCCHHHc--CCC-CCCEEEEEEcCCC
Confidence 4588999999999999999999876543 44466556667777764 122 4558888776544
No 78
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.02 E-value=17 Score=24.61 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=40.8
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++ |.- ++..|+|....
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEecc
Confidence 4568999999999999999999987654 44456655556667655 333 34467776654
No 79
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=50.17 E-value=14 Score=25.35 Aligned_cols=59 Identities=8% Similarity=0.105 Sum_probs=41.4
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEE-EEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFV-FVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
+-|+.+.||+++...|..+.++++++--.+ |-++.....+.+|++. .- .++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i-~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GL-GPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TC-CTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CC-CCCCEEEEEcc
Confidence 458999999999999999999998655555 4255445666777653 11 14557777665
No 80
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=49.46 E-value=15 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHhhhhCCCCCCeEEEEEcC
Q 033214 64 HILSSRLHLTPGKALFVFVKD 84 (125)
Q Consensus 64 ~~lRk~L~l~~~~slfl~Vnn 84 (125)
..||++|++.+++.+.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998875
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=49.28 E-value=34 Score=22.66 Aligned_cols=58 Identities=5% Similarity=0.093 Sum_probs=40.4
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qr-L~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 35588999999999999999999876544 44566544566676653 22 3457777654
No 82
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=49.19 E-value=12 Score=24.84 Aligned_cols=59 Identities=5% Similarity=0.060 Sum_probs=41.4
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEeccc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSE 114 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 114 (125)
+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .- ++..|++.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 44889999999999999999998765 4444566545566676553 22 455788876543
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.81 E-value=22 Score=23.32 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=43.5
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 118 (125)
+-|+.+.||++|...|..+-+++++.--.++........+.+|+++ .-+ .+..|+|......-=|
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~--~I~-~gstL~lvl~~~~~~~ 87 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL--HLP-KNNSLYVLTPDLPPPS 87 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHH--CCC-SEEEEEECCSSSCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHc--CCC-CCCEEEEEecCCCCCc
Confidence 3488999999999999999999876554443333224556688776 122 2357888776655333
No 84
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.05 E-value=17 Score=24.16 Aligned_cols=43 Identities=5% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCCCCeEEEEEcC--ccCCcc---chHHHHHhHcC-C----CCceEEEEecccc
Q 033214 72 LTPGKALFVFVKD--TLPQTA---TLMDSVYESFK-D----EDGFLYMCYSSEK 115 (125)
Q Consensus 72 l~~~~slfl~Vnn--~lp~~~---~~m~~lY~~~k-d----~DGfLyi~Ys~~~ 115 (125)
++|.+++ |||+| .-...+ ..|.+|+.+|. . ..||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4566665 77887 222222 24788999995 2 3688899887654
No 85
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.52 E-value=35 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=36.2
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
..|.|.++.++..++....++.++++..--|+|=+..+ ..+.|..++
T Consensus 37 i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 37 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 46889999999999999999999998866666644443 455566554
No 86
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.29 E-value=54 Score=21.00 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc-Cc----cCCccchHHH
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-DT----LPQTATLMDS 95 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-n~----lp~~~~~m~~ 95 (125)
++.|.|.|.-.. .+- .....-|+.+.||+++...|..+.++++.+---+|.+ +. +...+.+|++
T Consensus 13 ~~~v~l~It~s~-~~~---~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDA---VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CSC---EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CCc---eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775322 211 1234569999999999999999999997654444443 22 3355567765
No 87
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.06 E-value=11 Score=24.01 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.5
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+-|+.+.||++|...|..+.+++++.--.+ .+.... .|.+|++.
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 459999999999999999999987543333 344433 45577654
No 88
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=46.33 E-value=32 Score=21.98 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=41.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+++|-|.|.-.. + ....|.|.++.+++.++....++.++++..--|+| ++.....+.|..++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEEcCCCCCHHHc
Confidence 456666664221 1 23468899999999999999999999987555555 55334455555544
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=45.10 E-value=60 Score=20.92 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=41.0
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc-C-cc----CCccchHHH
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-D-TL----PQTATLMDS 95 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-n-~l----p~~~~~m~~ 95 (125)
+-|+|.|.-..... .....-|+.+.||+++...|..+.+++++.---+|.+ + .. ...+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56788885422111 1234569999999999999999999998665444544 2 22 244456765
No 90
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=45.01 E-value=14 Score=24.70 Aligned_cols=59 Identities=5% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.++++. .- ++..|++....
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeE-EEECCeECcCcccHHHh----ccCCCCeeEEEeec
Confidence 35589999999999999999999876543 44455444556666543 22 34467776543
No 91
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=44.93 E-value=21 Score=20.46 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=18.5
Q ss_pred HHHhhhhCCCCCCeEEEEEcC
Q 033214 64 HILSSRLHLTPGKALFVFVKD 84 (125)
Q Consensus 64 ~~lRk~L~l~~~~slfl~Vnn 84 (125)
..+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999998875
No 92
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.37 E-value=25 Score=22.13 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=41.1
Q ss_pred eEeecCCCchHhHHHHHhhh---hCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEecccc
Q 033214 50 KFLVPRDMSVGQFIHILSSR---LHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSEK 115 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~~ 115 (125)
.+-|+.+.||+++...|..+ -+++++.- -|+.++.....+.+|++ |+- ++..|++......
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKILNDDTALKE----YKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEECCTTSBGGG----GTCCSSSEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEECCCcCcHHH----CCCCCCCEEEEEEeCCC
Confidence 34589999999999999998 46776553 34446655566667765 333 4557887765443
No 93
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=43.48 E-value=14 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.7
Q ss_pred EeecCCCchHhHHHHHhhhhCCC
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLT 73 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~ 73 (125)
..||.+.++.+|..-|+.|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 45999999999999999999874
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=43.01 E-value=42 Score=22.75 Aligned_cols=59 Identities=7% Similarity=-0.007 Sum_probs=41.1
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .=.++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~G~~L~d~~tL~~y---~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY---GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG---TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHE-EEEECCeecCCCCCHHHc---CCCCCCEEEEEEe
Confidence 3559999999999999999999987654 444566555566677653 1124557777654
No 95
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=41.21 E-value=39 Score=23.40 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=32.2
Q ss_pred CCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214 43 LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK 83 (125)
Q Consensus 43 ~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 83 (125)
+|+..-+...|....+|++++..|-+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56667778899999999999999999999986544 44443
No 96
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.12 E-value=45 Score=22.88 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=40.9
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCC-CceEEEEecc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE-DGFLYMCYSS 113 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLyi~Ys~ 113 (125)
.-++.+.||++|...|-...+++++.-- |.-++.....++||++ |+=. ++-++|.-.+
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~----~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQ----HGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHH----HSCCSSCEEEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHH----cCCCCCCEEEEEEec
Confidence 3489999999999999999999987644 4445555577888875 4553 4455554433
No 97
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=40.98 E-value=26 Score=22.80 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=38.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhh-CCCCCCeEEEEEcCccCCccchHHHHHh
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRL-HLTPGKALFVFVKDTLPQTATLMDSVYE 98 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L-~l~~~~slfl~Vnn~lp~~~~~m~~lY~ 98 (125)
+..|.|.|.- .+.+.. ...+-|+.+.||+++...|..++ +..+.+..=|+.+......+.+|++...
T Consensus 21 ~~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhc
Confidence 3557777743 222210 11344799999999999999876 3332122223345555567788887643
No 98
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.93 E-value=11 Score=25.31 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.2
Q ss_pred ceEeecCCCchHhHHHHHhhhhCCC
Q 033214 49 KKFLVPRDMSVGQFIHILSSRLHLT 73 (125)
Q Consensus 49 ~Kflvp~~~tv~~~~~~lRk~L~l~ 73 (125)
...+||.+.++.+|..-|++|+++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3556999999999999999999876
No 99
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=40.86 E-value=18 Score=22.51 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=19.4
Q ss_pred HHHhhhhCCCCCCeEEEEEcC-c---cCCcc---chHHHHHhHcCCCCceEEEEeccccccCC
Q 033214 64 HILSSRLHLTPGKALFVFVKD-T---LPQTA---TLMDSVYESFKDEDGFLYMCYSSEKTFGY 119 (125)
Q Consensus 64 ~~lRk~L~l~~~~slfl~Vnn-~---lp~~~---~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 119 (125)
.-+|++|++.+++.+.+.+.+ . .|... .++.+++..+.+ | + |..+..||.
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg~ 75 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWGE 75 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC----------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccCC
Confidence 457899999999999998875 2 24333 478888888853 3 3 234556763
No 100
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.71 E-value=66 Score=20.14 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=32.7
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCC-eEEE
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGK-ALFV 80 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~-slfl 80 (125)
..|.|.|.... .+ .....-|+.+.||+++...|..+.++++++ .|++
T Consensus 6 ~~v~l~I~~~~---~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSL---NS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETT---SS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECC---CC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 45777775432 11 223456999999999999999999998654 4443
No 101
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.71 E-value=24 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcC-ccCCccchHHHHHhHcCC
Q 033214 73 TPGKALFVFVKD-TLPQTATLMDSVYESFKD 102 (125)
Q Consensus 73 ~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd 102 (125)
+++..|+|||.| .-+-....|.++|..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 457889999998 334455688888888865
No 102
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.65 E-value=38 Score=21.36 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=25.4
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCC-CeEEEE
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPG-KALFVF 81 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~-~slfl~ 81 (125)
.-+|.++||+++...|.+..++++. ..|+++
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 3589999999999999999999864 455554
No 103
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=39.95 E-value=63 Score=23.11 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=25.7
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCC
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGK 76 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~ 76 (125)
...+.||.+.|+.+|-.+|..-++-....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 67889999999999999999999987543
No 104
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.62 E-value=31 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEcCccCCccchHHHHHhHcCC--------CCceEEEEecccc
Q 033214 80 VFVKDTLPQTATLMDSVYESFKD--------EDGFLYMCYSSEK 115 (125)
Q Consensus 80 l~Vnn~lp~~~~~m~~lY~~~kd--------~DGfLyi~Ys~~~ 115 (125)
|||.| +--....|.+++..|.. ..||-+|.|.+.+
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~ 60 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 60 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHH
Confidence 44566 33344566666666642 3567777776543
No 105
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=38.54 E-value=43 Score=22.20 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=36.0
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
...|.|..+.++..++....++.++++..--|+| +......+.|..+|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 3468899999999999999999999987656666 44334455566554
No 106
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=38.19 E-value=6.7 Score=26.51 Aligned_cols=45 Identities=4% Similarity=0.126 Sum_probs=0.0
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECCEECCCCCchhhh
Confidence 458889999999999999989887654333 454444556666663
No 107
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=37.23 E-value=26 Score=22.99 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=22.6
Q ss_pred EEEcCccCCccchHHHHHhHcCCC--------CceEEEEecccc
Q 033214 80 VFVKDTLPQTATLMDSVYESFKDE--------DGFLYMCYSSEK 115 (125)
Q Consensus 80 l~Vnn~lp~~~~~m~~lY~~~kd~--------DGfLyi~Ys~~~ 115 (125)
|||+| +.-....|.+++..|... -||-+|.|.+.+
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 45666 445556777777777542 578888886543
No 108
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=35.83 E-value=31 Score=23.98 Aligned_cols=60 Identities=5% Similarity=0.105 Sum_probs=41.6
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. . - .++..|++....
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~L~d~~tL~~~-~-i-~~~~~l~l~~~~ 93 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY-N-I-QKESTLHLVLRL 93 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG-T-C-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCccccccCCHhHc-C-C-cccceeeeeecc
Confidence 3559999999999999999999988654 344566666667777763 1 1 134467766543
No 109
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=34.92 E-value=44 Score=23.61 Aligned_cols=59 Identities=5% Similarity=0.124 Sum_probs=41.6
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- .++..|++....
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--~I-~~gstI~Lvlrl 73 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NI-QKESTLHLVLRL 73 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG--TC-CTTCEEEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc--CC-CCCCEEEEEEEe
Confidence 4589999999999999999999887654 44466555667777764 11 234477776543
No 110
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=32.79 E-value=21 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=37.9
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCC--CCeEEEE-Ec-C---ccCCccchHHHHHh
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTP--GKALFVF-VK-D---TLPQTATLMDSVYE 98 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~--~~slfl~-Vn-n---~lp~~~~~m~~lY~ 98 (125)
.-.++||++-||+++...++++.++++ ...|-|+ |. + .+.+.+..+..|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 556789999999999999999999974 3335443 33 3 35677778877766
No 111
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=32.42 E-value=9.4 Score=27.02 Aligned_cols=58 Identities=5% Similarity=0.126 Sum_probs=0.0
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++.= - .++..|++...
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~dyg--I-~~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDYN--I-QKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCEEccccCcHHHcC--C-CCCCEEEEEee
Confidence 34888999999999999999998765433 34555556667777641 1 13446666543
No 112
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=31.97 E-value=69 Score=22.80 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcC-ccCCccchHHHHHhHcCCC----------CceEEEEeccc
Q 033214 73 TPGKALFVFVKD-TLPQTATLMDSVYESFKDE----------DGFLYMCYSSE 114 (125)
Q Consensus 73 ~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~----------DGfLyi~Ys~~ 114 (125)
+++..+.|||.| .-+-....|.++|..|... .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 456778899998 3345556899999998642 34566666543
No 113
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=31.46 E-value=38 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=23.5
Q ss_pred hCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCC
Q 033214 70 LHLTPGKALFVFVKD-TLPQTATLMDSVYESFKD 102 (125)
Q Consensus 70 L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd 102 (125)
+.-.++.-+.|||.| .-+-....|.+|+..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 334567889999999 555666788999998865
No 114
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.72 E-value=13 Score=24.22 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=39.4
Q ss_pred Eeec-CCCchHhHHHHHhhhhCCCCCC-eEEEEEcCc------------c---CCccchHHHHHhHcCC-CCceEEEEec
Q 033214 51 FLVP-RDMSVGQFIHILSSRLHLTPGK-ALFVFVKDT------------L---PQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 51 flvp-~~~tv~~~~~~lRk~L~l~~~~-slfl~Vnn~------------l---p~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
.-|. .+.||++|...|..+.++++.. .|+ .++. + ...+.+|+++ .- .+..|||.|.
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAYE 94 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCCS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEE--ECCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEeC
Confidence 4478 8999999999999999987643 333 2332 1 2344566543 22 3447999988
Q ss_pred cccc
Q 033214 113 SEKT 116 (125)
Q Consensus 113 ~~~~ 116 (125)
.+..
T Consensus 95 ~~~~ 98 (107)
T 1wf9_A 95 GERT 98 (107)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6643
No 115
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=30.23 E-value=60 Score=21.26 Aligned_cols=37 Identities=5% Similarity=0.149 Sum_probs=32.7
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD 84 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn 84 (125)
--++.|.++.|++.|...|-++-++++.+-.+||-+.
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 3468899999999999999999999998888888774
No 116
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.66 E-value=32 Score=22.80 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=43.7
Q ss_pred eecCCCchHhHHHHHhhhhCCCCC--------------CeEEEEEcCccC-CccchHHHHHhHcCCCCceEEEEeccccc
Q 033214 52 LVPRDMSVGQFIHILSSRLHLTPG--------------KALFVFVKDTLP-QTATLMDSVYESFKDEDGFLYMCYSSEKT 116 (125)
Q Consensus 52 lvp~~~tv~~~~~~lRk~L~l~~~--------------~slfl~Vnn~lp-~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~ 116 (125)
-|+.+.||+++...|..+.++++. ...-|..++... ..+.+|++ |.- + ++.+|++.-.....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-ygI-~-~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YGI-R-NRDEVSFIKKLGQK 99 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HTC-C-SSEEEEEEECSCSC
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cCC-C-CCCEEEEEehhccC
Confidence 388999999999999999887542 234454455444 45578887 321 1 45588887776666
Q ss_pred cCC
Q 033214 117 FGY 119 (125)
Q Consensus 117 fG~ 119 (125)
.|-
T Consensus 100 ~~~ 102 (105)
T 1v2y_A 100 SGP 102 (105)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 117
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=29.58 E-value=49 Score=27.76 Aligned_cols=61 Identities=10% Similarity=0.258 Sum_probs=43.9
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc---C--ccCC-ccchHHHHHhHcCCCCceEEEEec
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK---D--TLPQ-TATLMDSVYESFKDEDGFLYMCYS 112 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---n--~lp~-~~~~m~~lY~~~kd~DGfLyi~Ys 112 (125)
..|+.+.+++++...||++++++++..+=||=. + .... ++.++.+.+++-.+ ...|+..=.
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~-GdII~fQ~~ 217 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD-GDIIVFQKD 217 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT-TEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccC-CCEEEEEec
Confidence 578999999999999999999999888888732 2 1123 66788777755542 335655543
No 118
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=29.37 E-value=1e+02 Score=20.72 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
+++|-|.|.-.. +. ...|.|..+.++..++....++.+++...--|+| +......+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g~-----ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-DG~rI~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-SS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-SC-----EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEEcCC-CC-----EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-CCeECCCCCCHHHc
Confidence 367777774321 11 2368899999999999999999999987766666 44333344554444
No 119
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=28.98 E-value=1.3e+02 Score=19.86 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=45.7
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc-C-c----cCCccchHHHHHhHcCC
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-D-T----LPQTATLMDSVYESFKD 102 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-n-~----lp~~~~~m~~lY~~~kd 102 (125)
+.|.|.|..... + ...-.-|+.+.||+++...|..+.++++..---+|.+ + . +...+.+|++ |.=
T Consensus 5 ~~v~l~V~~~~~---~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~----y~i 75 (122)
T 1t0y_A 5 EVYDLEITTNAT---D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKD----LGV 75 (122)
T ss_dssp CEEEEEEEESSC---C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTT----TTC
T ss_pred CEEEEEEEECCC---C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHH----CCC
Confidence 457777754321 1 1233469999999999999999999997654444443 1 2 1234445532 333
Q ss_pred CCc-eEEEEeccc
Q 033214 103 EDG-FLYMCYSSE 114 (125)
Q Consensus 103 ~DG-fLyi~Ys~~ 114 (125)
.|| -|+|.=..-
T Consensus 76 ~~g~~ihvvd~~p 88 (122)
T 1t0y_A 76 RDGYRIHAVDVTG 88 (122)
T ss_dssp CSSEEEEEEECTT
T ss_pred CCCCEEEEEeCCC
Confidence 333 566665443
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=27.86 E-value=89 Score=20.15 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=28.3
Q ss_pred eEEEEEcCccCCcc-chHHHHHhHcCC--------CCceEEEEeccc
Q 033214 77 ALFVFVKDTLPQTA-TLMDSVYESFKD--------EDGFLYMCYSSE 114 (125)
Q Consensus 77 slfl~Vnn~lp~~~-~~m~~lY~~~kd--------~DGfLyi~Ys~~ 114 (125)
+-.|||.|--+..+ +.|.+|+.+|.. .-||=.|.|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 56788999666544 699999999965 367777777665
No 121
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=27.78 E-value=61 Score=20.29 Aligned_cols=32 Identities=3% Similarity=-0.019 Sum_probs=25.7
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEE
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFV 82 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 82 (125)
--++.+.||+++...|..+-++++++---+|.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 34899999999999999999998765444443
No 122
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.48 E-value=70 Score=19.96 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred chHHHHHhHcCC-------CCceEEEEeccc
Q 033214 91 TLMDSVYESFKD-------EDGFLYMCYSSE 114 (125)
Q Consensus 91 ~~m~~lY~~~kd-------~DGfLyi~Ys~~ 114 (125)
+.|.+++..|.+ .|||-+|.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 455555555543 136777777654
No 123
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=27.46 E-value=42 Score=21.73 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=37.4
Q ss_pred ecCCCchHhHHHHH-hhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC--CCceEEEEec
Q 033214 53 VPRDMSVGQFIHIL-SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD--EDGFLYMCYS 112 (125)
Q Consensus 53 vp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd--~DGfLyi~Ys 112 (125)
|+.+.||+++...| ..+-++++++-- |+.++.....+.+|++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 46999999999999 777788776544 4446655566777776 332 4557766543
No 124
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=27.39 E-value=48 Score=20.35 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=35.7
Q ss_pred ecCCCchHhHHHHHhhhhCCCCCCeEEEEEc--CccC-C-ccchHHHHHhHcCCCCceEEEEecc
Q 033214 53 VPRDMSVGQFIHILSSRLHLTPGKALFVFVK--DTLP-Q-TATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 53 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn--n~lp-~-~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
|+.+.||+++...|..+.++++..--.+|-. ..+. . .+.+|+++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 7889999999999999999875433333322 1221 2 455665531 11 24467777654
No 125
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=27.38 E-value=61 Score=19.73 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=23.5
Q ss_pred EEEcCccC-CccchHHHHHhHcCC---------CCceEEEEecccc
Q 033214 80 VFVKDTLP-QTATLMDSVYESFKD---------EDGFLYMCYSSEK 115 (125)
Q Consensus 80 l~Vnn~lp-~~~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 115 (125)
|||+|--+ -.+..|.+++.+|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 45666323 234578888888864 2589999997654
No 126
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=27.28 E-value=40 Score=24.65 Aligned_cols=57 Identities=5% Similarity=0.094 Sum_probs=40.2
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS 112 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 112 (125)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .- ++..|+|...
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~Qr-Li~~Gk~L~D~~tL~dy----gI~~gstI~Lvlr 177 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 177 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTCBGGGG----TCCTTCEEEECCC
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEE-EEECCEECCCCCCHHHC----CCCCCCEEEEEEE
Confidence 4599999999999999999999876433 33466656667777764 22 3446766543
No 127
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=27.11 E-value=31 Score=21.45 Aligned_cols=29 Identities=7% Similarity=0.337 Sum_probs=22.8
Q ss_pred eecCCCchHhHHHHHhhhhCCCC-CCeEEE
Q 033214 52 LVPRDMSVGQFIHILSSRLHLTP-GKALFV 80 (125)
Q Consensus 52 lvp~~~tv~~~~~~lRk~L~l~~-~~slfl 80 (125)
-|+.+.||+++...|...++++. ..++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 37888999999999999999863 345543
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=26.63 E-value=50 Score=21.12 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=22.4
Q ss_pred EEEcCccC-CccchHHHHHhHcCC-------CCceEEEEecccc
Q 033214 80 VFVKDTLP-QTATLMDSVYESFKD-------EDGFLYMCYSSEK 115 (125)
Q Consensus 80 l~Vnn~lp-~~~~~m~~lY~~~kd-------~DGfLyi~Ys~~~ 115 (125)
|||.|--+ ...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 45565222 344577888887754 1388888887654
No 129
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=25.83 E-value=55 Score=20.09 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.8
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTAT 91 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~ 91 (125)
.=+|...|++++. ++|+++++.. -+.+|....+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 4588999999864 6789998876 5788885555554
No 130
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=25.25 E-value=36 Score=25.68 Aligned_cols=60 Identities=7% Similarity=0.130 Sum_probs=42.3
Q ss_pred CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214 29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV 96 (125)
Q Consensus 29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l 96 (125)
++|-|-|. . .+ ....|.|..+.++..++....++.+++...--|+| +..-...+.|..+|
T Consensus 56 e~InLKVk-~-dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 56 THINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CEEEEEEE-C-SS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CcEEEEEe-c-CC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 45666663 2 11 34578999999999999999999999987767776 54333445555554
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.94 E-value=47 Score=20.01 Aligned_cols=16 Identities=0% Similarity=0.245 Sum_probs=8.0
Q ss_pred ecCCCchHhHHHHHhh
Q 033214 53 VPRDMSVGQFIHILSS 68 (125)
Q Consensus 53 vp~~~tv~~~~~~lRk 68 (125)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555555555444433
No 132
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=82 Score=19.03 Aligned_cols=10 Identities=10% Similarity=0.594 Sum_probs=6.0
Q ss_pred ceEEEEeccc
Q 033214 105 GFLYMCYSSE 114 (125)
Q Consensus 105 GfLyi~Ys~~ 114 (125)
||-+|.|.+.
T Consensus 53 g~afV~f~~~ 62 (99)
T 2div_A 53 GYCFVEFADL 62 (99)
T ss_dssp EEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 5666666544
No 133
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=23.67 E-value=1.1e+02 Score=23.48 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=38.5
Q ss_pred ccceE-eecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEeccc
Q 033214 47 EKKKF-LVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSE 114 (125)
Q Consensus 47 ~k~Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 114 (125)
+.+-| .=..+++..+|...++..-+-.++. ..|++. .+-++|++..+ -|..|+|+.|+.
T Consensus 35 ~~~~y~~D~~di~~~efy~~~~~~~~~~p~T--------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 35 DGETYYRDGVDITRDECYQRMVDDPKLFPKT--------SLPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSCEEEBTTTBCHHHHHHHHHHCTTCCCEE--------ECCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCCCcee--------cCCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 44556 5556889999999887641112222 245544 67788888755 378999999874
No 134
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.32 E-value=72 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.+||.+-.+...+.-..++|||+--..
T Consensus 63 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 92 (307)
T 3s5o_A 63 FLTSSERLEVVSRVRQAMPKNRLLLAGSGC 92 (307)
T ss_dssp GSCHHHHHHHHHHHHHTSCTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHcCCCCcEEEecCC
Confidence 357799999999999998999999996543
No 135
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=23.20 E-value=53 Score=24.33 Aligned_cols=36 Identities=8% Similarity=0.179 Sum_probs=30.7
Q ss_pred cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214 48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK 83 (125)
Q Consensus 48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 83 (125)
...|.|.++.++..++.....|.+++...--|+|=+
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG 75 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG 75 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETT
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECC
Confidence 457899999999999999999999998776677633
No 136
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=22.48 E-value=1e+02 Score=23.54 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=36.8
Q ss_pred ccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEeccc
Q 033214 47 EKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYSSE 114 (125)
Q Consensus 47 ~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 114 (125)
+..-|.=..+++..+|...++.- ++ ++. ..|++. .+-++|++..+ .|..|+|+.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~~-p~T--------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-HT-VKT--------AQPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-CC-CEE--------ECCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-CC-Cee--------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 34445555678889999888753 12 333 245554 46778877743 367999998864
No 137
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.22 E-value=53 Score=25.23 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEeecCCC---chHhHHHHHh---hhhCCC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD--LPDME--------KKKFLVPRDM---SVGQFIHILS---SRLHLT 73 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L~--------k~Kflvp~~~---tv~~~~~~lR---k~L~l~ 73 (125)
.-|.+||++-.+...+.-..|+|||+--...+- +-.+- .--.++|+-. +-..++.+.+ ....
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-- 130 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVE-- 130 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCS--
T ss_pred ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCC--
Confidence 347799999999999888899999997643220 00000 0012233221 3334444433 3333
Q ss_pred CCCeEEEEEcCc---cCCccchHHHHHhHcCCCCceEEEEecccc
Q 033214 74 PGKALFVFVKDT---LPQTATLMDSVYESFKDEDGFLYMCYSSEK 115 (125)
Q Consensus 74 ~~~slfl~Vnn~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 115 (125)
-.++||=+-. ..-...++.+|- + .+.+.-|.+++-+
T Consensus 131 --lPiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssgd 169 (300)
T 3eb2_A 131 --IPVVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDASTN 169 (300)
T ss_dssp --SCEEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSSB
T ss_pred --CCEEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCCC
Confidence 4588886521 222224777773 2 3668888887643
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=95 Score=18.79 Aligned_cols=11 Identities=9% Similarity=0.298 Sum_probs=6.0
Q ss_pred CceEEEEeccc
Q 033214 104 DGFLYMCYSSE 114 (125)
Q Consensus 104 DGfLyi~Ys~~ 114 (125)
-||-+|.|.+.
T Consensus 56 ~g~afV~f~~~ 66 (97)
T 2e5j_A 56 RRRAFLHYPDS 66 (97)
T ss_dssp TTEEEEECSSH
T ss_pred CcEEEEEECCH
Confidence 45666666543
No 139
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.71 E-value=61 Score=24.94 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEeecCCC---chHhHHHHHhhhhCCCCCC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD--LPDME--------KKKFLVPRDM---SVGQFIHILSSRLHLTPGK 76 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L~--------k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~ 76 (125)
.-|.|||++-.+...+.-..|+|||+--...+- +-.+- .--.++|+-. +-..+..+.+.=..-. .-
T Consensus 64 ~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 142 (304)
T 3l21_A 64 TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-EL 142 (304)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 347799999999999988899999997643220 00000 0112233221 3344444443322211 34
Q ss_pred eEEEEEcC---ccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 77 ALFVFVKD---TLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 77 slfl~Vnn---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
.++||=+- ...-...++.+|- ++ ..+.-|.+++-
T Consensus 143 PiilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 143 PMLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred CEEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 58888542 1222334667776 33 56778887764
No 140
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=21.64 E-value=63 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=18.2
Q ss_pred HHHhhhhCCCCCCeEEEEEc
Q 033214 64 HILSSRLHLTPGKALFVFVK 83 (125)
Q Consensus 64 ~~lRk~L~l~~~~slfl~Vn 83 (125)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999997
No 141
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.58 E-value=44 Score=20.97 Aligned_cols=54 Identities=7% Similarity=0.183 Sum_probs=33.8
Q ss_pred eecCCCchHhHHHHHhhh-hCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCC-CCceEEE
Q 033214 52 LVPRDMSVGQFIHILSSR-LHLTPGKALFVFVKD-TLPQTATLMDSVYESFKD-EDGFLYM 109 (125)
Q Consensus 52 lvp~~~tv~~~~~~lRk~-L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd-~DGfLyi 109 (125)
-|+++.||+++...|.+. -++++..--.+|... .....+.+|++ |+- ++.+||+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~----y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQK----LPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTT----SSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHH----cCCCCCCEEEE
Confidence 489999999999999984 567665444444433 44445556654 222 3446665
No 142
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.55 E-value=39 Score=20.20 Aligned_cols=25 Identities=8% Similarity=0.446 Sum_probs=13.4
Q ss_pred chHHHHHhHcCC---------CCceEEEEecccc
Q 033214 91 TLMDSVYESFKD---------EDGFLYMCYSSEK 115 (125)
Q Consensus 91 ~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 115 (125)
..|.+++..|.. .-||-||.|.+.+
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 345555555532 2466677766543
No 143
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=21.38 E-value=77 Score=28.95 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=34.7
Q ss_pred eEeecCCCchHhHHHHHhhhhCCCCC-----CeEEEEEcCccC------CccchHHHHHhHc
Q 033214 50 KFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFVKDTLP------QTATLMDSVYESF 100 (125)
Q Consensus 50 Kflvp~~~tv~~~~~~lRk~L~l~~~-----~slfl~Vnn~lp------~~~~~m~~lY~~~ 100 (125)
+|-|+.++|+.+|+..+++++++... .+ -||. .+.| ..+.+|.+|++.-
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~-~~~~~~~~~~~l~~~l~~l~~~~ 980 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYA-SFFPPKKLKERLNLPITQLVKLV 980 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEE-TTCCHHHHHHHTTSBHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEe-cCCCchhhHHhccCCHHHHHHhh
Confidence 66788899999999999999887532 11 1222 2344 3567899999875
No 144
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.22 E-value=65 Score=24.49 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEeecCCC---chHhHHHHHh---hhhCCC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD--LPDMEK--------KKFLVPRDM---SVGQFIHILS---SRLHLT 73 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L~k--------~Kflvp~~~---tv~~~~~~lR---k~L~l~ 73 (125)
.-|.|||++-.+...+.-..|+|||+--...+- +-.+-+ --.++|+-. +-..+..+.+ ....+
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~l- 127 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINL- 127 (289)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSS-
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCC-
Confidence 357799999999988888889999997654321 100100 012233322 3233333333 33333
Q ss_pred CCCeEEEEEcC---ccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 74 PGKALFVFVKD---TLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 74 ~~~slfl~Vnn---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
.+++|=+- ...-..+++.+|-+++ +.+.-|.+++-
T Consensus 128 ---PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 128 ---PIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp ---CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred ---CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57777542 1222335788887555 45777777653
No 145
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=20.99 E-value=89 Score=23.79 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEeecCC----CchHhHHHHHhhhhCCCC-
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD--LPDMEK--------KKFLVPRD----MSVGQFIHILSSRLHLTP- 74 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L~k--------~Kflvp~~----~tv~~~~~~lRk~L~l~~- 74 (125)
.-|.|||++-.+...+.-..++|||+--...+- +-.+-+ --.++|+- .+-..+..+.+.=..-.+
T Consensus 52 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~ 131 (294)
T 3b4u_A 52 SVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGK 131 (294)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCT
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 357799999999999888899999997654320 000000 01222221 132344433332211111
Q ss_pred -CCeEEEEEcC---ccCCccchHHHHHhHcCCCCc-eEEEEeccc
Q 033214 75 -GKALFVFVKD---TLPQTATLMDSVYESFKDEDG-FLYMCYSSE 114 (125)
Q Consensus 75 -~~slfl~Vnn---~lp~~~~~m~~lY~~~kd~DG-fLyi~Ys~~ 114 (125)
.-.+++|=+- ...-...++.+|-+++ +. +.-|.+++-
T Consensus 132 ~~lPiilYn~P~~tg~~l~~~~~~~La~~~---pn~ivgiKds~g 173 (294)
T 3b4u_A 132 DARDILVYNIPSVTMVTLSVELVGRLKAAF---PGIVTGVKDSSG 173 (294)
T ss_dssp TCCCEEEEECHHHHSCCCCHHHHHHHHHHC---TTTEEEEEECCC
T ss_pred CCCcEEEEECcchhCcCCCHHHHHHHHHhC---CCcEEEEEECCC
Confidence 2357877542 1222335788887544 45 777777764
No 146
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=20.97 E-value=86 Score=24.21 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCc--cceEeecCCC---chHhHHHHHhhhhCCCCC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD---------LPDME--KKKFLVPRDM---SVGQFIHILSSRLHLTPG 75 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~---------~p~L~--k~Kflvp~~~---tv~~~~~~lRk~L~l~~~ 75 (125)
.-|.+||++-.+...+.-..|+|||+--...+- +-.+. .--.++|+-. +-..+..+.+.=..- ..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~ 134 (311)
T 3h5d_A 56 TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SD 134 (311)
T ss_dssp GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CC
Confidence 357799999999999998999999997644210 11111 1122333321 233444444322211 13
Q ss_pred CeEEEEEcC---ccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214 76 KALFVFVKD---TLPQTATLMDSVYESFKDEDGFLYMCYSS 113 (125)
Q Consensus 76 ~slfl~Vnn---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 113 (125)
-.++||=+- ...-...++.+|-+ .+.+.-|.+|+
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~----~pnIvgiKdss 171 (311)
T 3h5d_A 135 LPIIIYNIPGRVVVELTPETMLRLAD----HPNIIGVKECT 171 (311)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHHT----STTEEEEEECS
T ss_pred CCEEEEecccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 458887542 12222345666753 25677888876
No 147
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.78 E-value=68 Score=24.41 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.+||.+-.+...+.-..|+|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 50 TMTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 357799999999888888899999997654
No 148
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.76 E-value=68 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.+||++-.+...+.-..|+|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 457899999999999888899999996643
No 149
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.75 E-value=66 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERY 38 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~ 38 (125)
.-|.+||++-.+...+.-..|+|||+--.
T Consensus 61 ~Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 61 ALSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 34779999999999988889999999764
No 150
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.75 E-value=90 Score=19.04 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCCC---CCCccceEeecCCCchHhHHHHHhhhhCCC
Q 033214 18 EESREIIAKYPDRVPVIAERYSKADL---PDMEKKKFLVPRDMSVGQFIHILSSRLHLT 73 (125)
Q Consensus 18 ~e~~~~r~kyp~~ipVIvE~~~~~~~---p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~ 73 (125)
.-...+++.+| .+|||+=-.....- ..++.- -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 44566777766 68877754332110 001111 24566777888888887776543
No 151
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.68 E-value=68 Score=24.45 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEeecCCC---chHhHHHHHh---hhhCCC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYSKAD--LPDMEK--------KKFLVPRDM---SVGQFIHILS---SRLHLT 73 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L~k--------~Kflvp~~~---tv~~~~~~lR---k~L~l~ 73 (125)
.-|.|||.+-.+...+.-..|+|||+--...+- +-.+-+ --.++|+-. +-.++..+.+ ....
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-- 126 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVD-- 126 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC--
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC--
Confidence 357799999999888888889999997654321 100100 012233322 3333443333 3333
Q ss_pred CCCeEEEEEcC---ccCCccchHHHHHhHcCCCCceEEEEeccc
Q 033214 74 PGKALFVFVKD---TLPQTATLMDSVYESFKDEDGFLYMCYSSE 114 (125)
Q Consensus 74 ~~~slfl~Vnn---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 114 (125)
-.+++|=+- ...-..+++.+|-+++ +.+.-|.+|+-
T Consensus 127 --lPiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKds~g 165 (294)
T 2ehh_A 127 --IPIIIYNIPSRTCVEISVDTMFKLASEC---ENIVASKESTP 165 (294)
T ss_dssp --SCEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred --CCEEEEeCCcccCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 357777542 1222335677776444 45666776653
No 152
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.65 E-value=68 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.+||++-.+...+.-..|+|||+--..
T Consensus 72 ~Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 72 TLDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 347799999999999888899999996544
No 153
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=20.58 E-value=96 Score=18.41 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=24.0
Q ss_pred EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccc
Q 033214 51 FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTAT 91 (125)
Q Consensus 51 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~ 91 (125)
+-++...|++++...+ ++++. .+.+.+|....+.+.
T Consensus 18 ~~~~~~~tv~~Ll~~l----~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLGEL----EIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHHHT----TCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHHHh----CCCCC-CEEEEECCEECCCcc
Confidence 5678888999976654 56654 467889985444443
No 154
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.58 E-value=67 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.|||++-.+...+.-..|+|||+--..
T Consensus 65 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 94 (304)
T 3cpr_A 65 TTTAAEKLELLKAVREEVGDRAKLIAGVGT 94 (304)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEecCCC
Confidence 357799999999888888899999997654
No 155
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.44 E-value=70 Score=24.34 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.+||++-.+...+.-..|+|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 50 TLSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 457899999999999888899999996543
No 156
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.37 E-value=69 Score=24.70 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.|||++-.+...+.-..|+|||+--..
T Consensus 57 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 86 (309)
T 3fkr_A 57 AITDDERDVLTRTILEHVAGRVPVIVTTSH 86 (309)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 346799999999998888899999997654
No 157
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.28 E-value=70 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.|||++-.+...+.-..|+|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (292)
T 2ojp_A 50 TLNHDEHADVVMMTLDLADGRIPVIAGTGA 79 (292)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 357799999999888888889999987654
No 158
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.21 E-value=70 Score=24.35 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033214 10 EFTFEQRLEESREIIAKYPDRVPVIAERYS 39 (125)
Q Consensus 10 ~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~ 39 (125)
.-|.|||++-.+...+.-..|+|||+--..
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 53 MLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 357799999999888888899999997654
Done!