BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033216
MAGRLSNVASQIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPNKPLSVNDELVWDNGTP
FPEPCIDRIADTVGKYEALGWLLGGLGFFASLGALAVWNDKASKIPFTPKVYPYDNLRVE
LGGEP

High Scoring Gene Products

Symbol, full name Information P value
AT5G47570 protein from Arabidopsis thaliana 2.3e-46

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033216
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2169003 - symbol:AT5G47570 "AT5G47570" species...   486  2.3e-46   1


>TAIR|locus:2169003 [details] [associations]
            symbol:AT5G47570 "AT5G47570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005747 "mitochondrial
            respiratory chain complex I" evidence=IDA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA]
            [GO:0009853 "photorespiration" evidence=RCA] [GO:0051788 "response
            to misfolded protein" evidence=RCA] [GO:0080129 "proteasome core
            complex assembly" evidence=RCA] GO:GO:0016021 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0022900 EMBL:AB025628 GO:GO:0005747
            EMBL:AF462836 EMBL:AY097354 EMBL:AY084983 IPI:IPI00523199
            RefSeq:NP_568684.1 UniGene:At.7966 IntAct:Q9FGK0 STRING:Q9FGK0
            PaxDb:Q9FGK0 PRIDE:Q9FGK0 GeneID:834807 KEGG:ath:AT5G47570
            TAIR:At5g47570 eggNOG:NOG238309 HOGENOM:HOG000077395
            InParanoid:Q9FGK0 OMA:AFPEPCI PhylomeDB:Q9FGK0
            ProtClustDB:CLSN2689949 Genevestigator:Q9FGK0 Uniprot:Q9FGK0
        Length = 125

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 94/125 (75%), Positives = 100/125 (80%)

Query:     1 MAGRLSNVASQIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPNKPLSVNDELVWDNGTP 60
             MAGRLS VAS+IMGGNGVV RSV SSLR R+GMGLPVGKHIVP+KPLSVNDEL+WDNGT 
Sbjct:     1 MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query:    61 FPEPCIDRIADTVGKYEXXXXXXXXXXXXXXXXXXXVWNDKASKIPFTPKVYPYDNLRVE 120
             FPEPCIDRIADTVGKYE                   V NDKASK+PFTP+VYPYDNLRVE
Sbjct:    61 FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query:   121 LGGEP 125
             LGGEP
Sbjct:   121 LGGEP 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       106   0.00091  102 3  11 22  0.50    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.61u 0.13s 10.74t   Elapsed:  00:00:01
  Total cpu time:  10.61u 0.13s 10.74t   Elapsed:  00:00:01
  Start:  Mon May 20 21:43:10 2013   End:  Mon May 20 21:43:11 2013

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