BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033216
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGK0|NDUB8_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2
SV=1
Length = 125
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/125 (86%), Positives = 114/125 (91%)
Query: 1 MAGRLSNVASQIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPNKPLSVNDELVWDNGTP 60
MAGRLS VAS+IMGGNGVV RSV SSLR R+GMGLPVGKHIVP+KPLSVNDEL+WDNGT
Sbjct: 1 MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60
Query: 61 FPEPCIDRIADTVGKYEALGWLLGGLGFFASLGALAVWNDKASKIPFTPKVYPYDNLRVE 120
FPEPCIDRIADTVGKYEAL WL GGLGFF LG LAV NDKASK+PFTP+VYPYDNLRVE
Sbjct: 61 FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120
Query: 121 LGGEP 125
LGGEP
Sbjct: 121 LGGEP 125
>sp|A9A305|IF6_NITMS Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain
SCM1) GN=eif6 PE=3 SV=1
Length = 221
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 54 VWDNGTPFPEPCIDRIADTVGKYEALGWLLGGLGFFASLGALAVWNDKASKIPFTPKVYP 113
V DN P A+ + KY + +L + +GAL + N+K +P T
Sbjct: 20 VNDNTILLPMGFAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNE 79
Query: 114 YDNLRVELGGE 124
+D L+ EL E
Sbjct: 80 FDFLKKELDLE 90
>sp|Q49ZU9|FENR_STAS1 Ferredoxin--NADP reductase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP0530 PE=3 SV=1
Length = 343
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 40 HIVPNKPLSVNDELVWDNGTPFPEPCIDRIADTVGK 75
H+ P K ++WD G P+PC + I DTV +
Sbjct: 41 HVYPEK-------IIWDIGGLAPKPCFEVIQDTVKQ 69
>sp|Q9D6J5|NDUB8_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Mus musculus GN=Ndufb8 PE=1 SV=1
Length = 186
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 103 SKIPFTPKVYPYDNLRVELGGEP 125
S P PK YPY+NL +E GG+P
Sbjct: 152 SYQPVGPKQYPYNNLYLERGGDP 174
>sp|P0CB85|NDUB8_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pongo abelii GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 106 PFTPKVYPYDNLRVELGGEP 125
P PK YPY+NL +E GG+P
Sbjct: 155 PVGPKQYPYNNLYLERGGDP 174
>sp|Q0MQE7|NDUB8_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pan troglodytes GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 106 PFTPKVYPYDNLRVELGGEP 125
P PK YPY+NL +E GG+P
Sbjct: 155 PVGPKQYPYNNLYLERGGDP 174
>sp|O95169|NDUB8_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Homo sapiens GN=NDUFB8 PE=1 SV=1
Length = 186
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 106 PFTPKVYPYDNLRVELGGEP 125
P PK YPY+NL +E GG+P
Sbjct: 155 PVGPKQYPYNNLYLERGGDP 174
>sp|Q0MQE6|NDUB8_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFB8 PE=2
SV=1
Length = 186
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 106 PFTPKVYPYDNLRVELGGEP 125
P PK YPY+NL +E GG+P
Sbjct: 155 PVGPKQYPYNNLYLERGGDP 174
>sp|P0CB86|NDUB8_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial OS=Pongo pygmaeus GN=NDUFB8 PE=2 SV=1
Length = 186
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 106 PFTPKVYPYDNLRVELGGEP 125
P PK YPY+NL +E GG+P
Sbjct: 155 PVGPKQYPYNNLYLERGGDP 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,902,142
Number of Sequences: 539616
Number of extensions: 2284507
Number of successful extensions: 5453
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5444
Number of HSP's gapped (non-prelim): 18
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)