Query 033216
Match_columns 125
No_of_seqs 39 out of 41
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_L Cytochrome C oxidase su 48.3 29 0.00098 22.5 4.3 15 17-31 3-17 (63)
2 1q90_R Cytochrome B6-F complex 20.1 1.2E+02 0.0041 18.6 3.5 27 69-95 5-31 (49)
3 2m0o_A PHD finger protein 1; t 14.3 1.4E+02 0.0048 20.4 2.9 27 40-66 20-48 (79)
4 1u02_A Trehalose-6-phosphate p 14.1 80 0.0027 22.9 1.8 24 64-87 150-173 (239)
5 1wrg_A LH-1, light-harvesting 12.1 2.1E+02 0.0071 18.1 3.1 31 79-110 20-50 (55)
6 2k1e_A Water soluble analogue 11.3 3.4E+02 0.012 17.5 4.4 26 72-97 65-91 (103)
7 2l8s_A Integrin alpha-1; trans 10.8 3.3E+02 0.011 17.1 3.9 39 72-117 6-45 (54)
8 4h33_A LMO2059 protein; bilaye 10.7 3.3E+02 0.011 18.7 4.1 26 73-98 69-95 (137)
9 1vry_A Glycine receptor alpha- 10.4 2E+02 0.0067 19.0 2.7 30 70-99 26-59 (76)
10 3r4c_A Hydrolase, haloacid deh 10.0 1.2E+02 0.0041 21.5 1.6 25 63-87 183-207 (268)
No 1
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=48.27 E-value=29 Score=22.49 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=0.0
Q ss_pred ceeehhhhhhhhhhc
Q 033216 17 GVVGRSVASSLRLRS 31 (125)
Q Consensus 17 ~~~~r~~~~~l~~r~ 31 (125)
+..+|...+++.+|+
T Consensus 3 ~~s~R~f~ts~~r~s 17 (63)
T 2y69_L 3 GQSIRRFTTSVVRRS 17 (63)
T ss_dssp ---------------
T ss_pred hHHHHHhhccHHHhc
Confidence 345788888888776
No 2
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=20.12 E-value=1.2e+02 Score=18.59 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=21.0
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHhhh
Q 033216 69 IADTVGKYEALGWLLGGLGFFASLGAL 95 (125)
Q Consensus 69 ~~~~Isk~eAl~~l~~gl~fFa~lg~v 95 (125)
+.+.+++++-+.+++.|...+.+.+.+
T Consensus 5 ~~pdm~RRqfln~l~~G~~a~~a~~~~ 31 (49)
T 1q90_R 5 EVPDMNKRNIMNLILAGGAGLPITTLA 31 (49)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999888777666443
No 3
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=14.29 E-value=1.4e+02 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCcccc--ccCCCCCCCccc
Q 033216 40 HIVPNKPLSVNDELV--WDNGTPFPEPCI 66 (125)
Q Consensus 40 ~~~p~kpLpe~~EL~--Wd~G~a~PEp~i 66 (125)
...|...+.|++++. |.||-.++-+.+
T Consensus 20 ~~~p~~~f~eGeDVLarwsDGlfYLGTI~ 48 (79)
T 2m0o_A 20 TSGPRPRLWEGQDVLARWTDGLLYLGTIK 48 (79)
T ss_dssp CCSCCCCCCTTCEEEBCCTTSCCCEEEEE
T ss_pred ccCCcceeccCCEEEEEecCCCEEeEEEE
Confidence 445566788999984 999999875544
No 4
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=14.08 E-value=80 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.038 Sum_probs=20.0
Q ss_pred ccccccCCCcCHHHHHHHHHHHHH
Q 033216 64 PCIDRIADTVGKYEALGWLLGGLG 87 (125)
Q Consensus 64 p~iD~~~~~Isk~eAl~~l~~gl~ 87 (125)
-++|..+..++|..|+.+|+--++
T Consensus 150 ~~lei~~~~~~Kg~al~~l~~~~g 173 (239)
T 1u02_A 150 MIIELRVPGVNKGSAIRSVRGERP 173 (239)
T ss_dssp SEEEEECTTCCHHHHHHHHHTTSC
T ss_pred cEEEEEcCCCCHHHHHHHHHhhCC
Confidence 468999999999999999985443
No 5
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=12.11 E-value=2.1e+02 Score=18.05 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCCCC
Q 033216 79 LGWLLGGLGFFASLGALAVWNDKASKIPFTPK 110 (125)
Q Consensus 79 l~~l~~gl~fFa~lg~va~~~Dk~sk~P~~pR 110 (125)
=.+...++.+|.++-++|++- -+..||..|.
T Consensus 20 H~~f~~~~~~F~~iAvvAH~L-~~~wrPWl~g 50 (55)
T 1wrg_A 20 HKIFTSSILVFFGVAAFAHLL-VWIWRPWVPG 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSSCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcccCCC
Confidence 456777888888888888754 4678887764
No 6
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=11.32 E-value=3.4e+02 Score=17.48 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHH-hhhhh
Q 033216 72 TVGKYEALGWLLGGLGFFASL-GALAV 97 (125)
Q Consensus 72 ~Isk~eAl~~l~~gl~fFa~l-g~va~ 97 (125)
...+--+..+.+.|+.+|+.+ +.++.
T Consensus 65 ~~gr~~~~~~~l~G~~~~~~~~~~i~~ 91 (103)
T 2k1e_A 65 EEGRKVAEQVMKAGIEVFALVTAALAT 91 (103)
T ss_dssp SSCTHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888889999999998877 55544
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.83 E-value=3.3e+02 Score=17.07 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=23.3
Q ss_pred CcCHHHHHHHHHHHHHHHHHH-hhhhhhccCCCCCCCCCCCCCCcch
Q 033216 72 TVGKYEALGWLLGGLGFFASL-GALAVWNDKASKIPFTPKVYPYDNL 117 (125)
Q Consensus 72 ~Isk~eAl~~l~~gl~fFa~l-g~va~~~Dk~sk~P~~pR~yPyd~L 117 (125)
.+..+--+.-.++|+-+++.+ +.+.+.. |-.|.||..+.
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~G-------FFKR~~~~~~~ 45 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIG-------FFKRPLKKKME 45 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCCSCCCC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcC-------cccCCCcchhh
Confidence 355566666677777777766 5555533 45566664443
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=10.69 E-value=3.3e+02 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHHHHHHHH-hhhhhh
Q 033216 73 VGKYEALGWLLGGLGFFASL-GALAVW 98 (125)
Q Consensus 73 Isk~eAl~~l~~gl~fFa~l-g~va~~ 98 (125)
.++--+..+.+.|.++|+.+ +.++.+
T Consensus 69 ~gr~~~~~~~~~g~~~~~~~~~~i~~~ 95 (137)
T 4h33_A 69 IGRILASIMMLFGIAFIGMITSTITNF 95 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888898888887 666653
No 9
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=10.38 E-value=2e+02 Score=18.99 Aligned_cols=30 Identities=23% Similarity=0.021 Sum_probs=19.3
Q ss_pred CCCcCHHHHHHHHH---HHHHHHHHH-hhhhhhc
Q 033216 70 ADTVGKYEALGWLL---GGLGFFASL-GALAVWN 99 (125)
Q Consensus 70 ~~~Isk~eAl~~l~---~gl~fFa~l-g~va~~~ 99 (125)
-|.||.-.|+-+|+ ..|.|.+-+ +.+++|.
T Consensus 26 lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~ 59 (76)
T 1vry_A 26 LPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFV 59 (76)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777776654 666666666 5556665
No 10
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=9.95 E-value=1.2e+02 Score=21.54 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=20.6
Q ss_pred CccccccCCCcCHHHHHHHHHHHHH
Q 033216 63 EPCIDRIADTVGKYEALGWLLGGLG 87 (125)
Q Consensus 63 Ep~iD~~~~~Isk~eAl~~l~~gl~ 87 (125)
..++|..+..++|..|+.+++--++
T Consensus 183 ~~~~ei~~~~~~K~~~l~~l~~~lg 207 (268)
T 3r4c_A 183 PLFADVNVAGTSKATGLSLFADYYR 207 (268)
T ss_dssp TTEEEEEETTCCHHHHHHHHHHHTT
T ss_pred CCeEEEeeCCCCHHHHHHHHHHHcC
Confidence 3578888899999999999986553
Done!