BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033217
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
Length = 268
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 68 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113
D + ATIV FGDR G L T+++LK LG N + N LD++ K
Sbjct: 178 DHEEYATIVS-RFGDR-GFL--TIDSLKELGFNEQRINRILDAAKK 219
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
pdb|3ICX|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
pdb|3ICX|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5
(135-380)
Length = 255
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 68 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113
D + ATIV FGDR G L T+++LK LG N + N LD++ K
Sbjct: 45 DHEEYATIVS-RFGDR-GFL--TIDSLKELGFNEQRINRILDAAKK 86
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 388
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 68 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113
D + ATIV FGDR G L T+++LK LG N + N LD++ K
Sbjct: 178 DHEEYATIVS-RFGDR-GFL--TIDSLKELGFNEQRINRILDAAKK 219
>pdb|2OKV|A Chain A, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|B Chain B, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|C Chain C, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|D Chain D, C-Myc Dna Unwinding Element Binding Protein
Length = 209
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 86 ALLDTMNALKNLGLNVVKANVFLDSSGKH-NKFAITKAYVL 125
+L DT L+++ ++ VF D SGKH +K + K Y +
Sbjct: 34 SLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEI 74
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 43 PARRRYD-GSNGDTDTIPTPKVIIDLDSDP 71
PAR+R + G GD D++P P+ I + + P
Sbjct: 166 PARKRLNFGQTGDADSVPDPQPIGEPPAAP 195
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 56 DTIPTPKV-IIDLDSDPDATIVEITFGDRLGAL 87
++IP P++ I+ S+P A VE+ F +R+ AL
Sbjct: 168 ESIPKPRMMILGFPSNPTAQCVELDFFERVVAL 200
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 RLGALLDTMN--ALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL 125
R G L DT++ +L+NL V VF DS+ AI +A+VL
Sbjct: 397 RTGGLADTVSDSSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 RLGALLDTMN--ALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL 125
R G L DT++ +L+NL V VF DS+ AI +A+VL
Sbjct: 397 RTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 RLGALLDTMN--ALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL 125
R G L DT++ +L+NL V VF DS+ AI +A+VL
Sbjct: 397 RTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441
>pdb|1XRS|A Chain A, Crystal Structure Of Lysine 5,6-Aminomutase In Complex
With Plp, Cobalamin, And 5'-Deoxyadenosine
Length = 516
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 54 DTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLG 98
DTD +P P +++D + + G LGA + NA+ N G
Sbjct: 52 DTDEVPLPNIVVDHIKENN--------GLNLGAAMYIANAVLNTG 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,697,183
Number of Sequences: 62578
Number of extensions: 149750
Number of successful extensions: 287
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 26
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)