BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033217
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 66/73 (90%)
Query: 49 DGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108
DGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LLDTMNALKNLGLNVVKA+V L
Sbjct: 65 DGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCL 124
Query: 109 DSSGKHNKFAITK 121
DS+GKH K AITK
Sbjct: 125 DSTGKHIKLAITK 137
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 66/73 (90%)
Query: 49 DGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108
DGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LLDTMNALKNLGLNVVKA+V L
Sbjct: 65 DGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCL 124
Query: 109 DSSGKHNKFAITK 121
DS+GKH K AITK
Sbjct: 125 DSTGKHIKLAITK 137
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
P+V+ID ++ T++E+ DR G L D AL NL L + A +
Sbjct: 845 PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKI 890
>sp|Q1B3F3|MOAA_MYCSS Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain MCS) GN=moaA PE=3 SV=1
Length = 350
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|A1ULP7|MOAA_MYCSK Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain KMS) GN=moaA PE=3 SV=1
Length = 350
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|A3Q648|MOAA_MYCSJ Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain JLS) GN=moaA PE=3 SV=1
Length = 350
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|B2HFA4|MOAA_MYCMM Cyclic pyranopterin monophosphate synthase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=moaA PE=3 SV=1
Length = 360
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHN----- 115
+V + LD+ A IT DRL +LD + + GL VK N LD +G+ +
Sbjct: 144 RVNVSLDTVDRAHFAAITRRDRLTDVLDGLAGARAAGLTPVKVNAVLDPETGRQDVVELL 203
Query: 116 KFAITKAYVL 125
+F + + Y L
Sbjct: 204 RFCLEQGYQL 213
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 46 RRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 105
RR G + PKVI++ T++E++ DR G L A+ L LN+ A+
Sbjct: 822 RRAAGKTRLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAH 881
Query: 106 V 106
V
Sbjct: 882 V 882
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
P+V+ID + T++E+ DR G L D +AL + L + A++
Sbjct: 856 PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHI 901
>sp|A0PKZ7|MOAA_MYCUA Cyclic pyranopterin monophosphate synthase OS=Mycobacterium
ulcerans (strain Agy99) GN=moaA PE=3 SV=1
Length = 360
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHN----- 115
+V + LD+ A +T DRL +LD + + GL VK N LD +G+ +
Sbjct: 144 RVNVSLDTVDRAHFAAVTRRDRLTDVLDGLAGARAAGLTPVKVNAVLDPETGRQDVVELL 203
Query: 116 KFAITKAYVL 125
+F + + Y L
Sbjct: 204 RFCLEQGYQL 213
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
T+P P+VI+D + T++EI DR G L AL ++ + + A V
Sbjct: 823 TVP-PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARV 871
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
P V ID D+ DAT+VE + DR G L L + L++ A++
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI 879
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
P V ID D+ DAT+VE + DR G L L + L++ A++
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI 879
>sp|Q2UGQ2|EFGM_ASPOR Elongation factor G, mitochondrial OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=mef1 PE=3 SV=1
Length = 799
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKF 117
I E+ GD++GA +D+M+ + G+ + A F D GK NK+
Sbjct: 129 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKY 176
>sp|B8N9M2|EFGM_ASPFN Elongation factor G, mitochondrial OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=mef1 PE=3 SV=1
Length = 799
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKF 117
I E+ GD++GA +D+M+ + G+ + A F D GK NK+
Sbjct: 129 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKY 176
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 60 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
TP V++D ++ +T+VE + DR G L + + GL+++ A++
Sbjct: 830 TPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHI 876
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 44 ARRRYDGSNGDTDT-IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVV 102
ARR GS + P+V I+ + T++E++ DR G L A+ L LN+
Sbjct: 817 ARRASSGSKAKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIA 876
Query: 103 KANV 106
A+V
Sbjct: 877 SAHV 880
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
PKV I+ T++E++ DR G L A+ L LN+ A+V
Sbjct: 835 PKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHV 880
>sp|A4T4R8|Y850_MYCGI UPF0301 protein Mflv_0850 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=Mflv_0850 PE=3 SV=1
Length = 204
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 23 KANAAFVTGSPRFGNKPLCCPARRRYDGSNGDTDTIPTPKVIIDLDSDPD--ATIVE 77
K +AA G+ R G+ P+ P R G V++DLD+DPD A I+E
Sbjct: 90 KRDAALCLGTLRVGSDPVGVPGLRHVQGR----------IVMVDLDADPDELAPILE 136
>sp|Q0CLP3|EFGM_ASPTN Elongation factor G, mitochondrial OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=mef1 PE=3 SV=1
Length = 802
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKFAI 119
I E+ GD++GA +D+M+ + G+ + A F D GK +K+ I
Sbjct: 132 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDKEGKEHKYHI 181
>sp|Q2Y5Q1|GLND_NITMU [Protein-PII] uridylyltransferase OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=glnD PE=3 SV=1
Length = 887
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 60 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119
TP+V I+ D ++ IT GD+ G L L GLNV A + + F +
Sbjct: 781 TPQVSIEPDDSGAYYVLSITAGDQSGLLSRIAQVLVRFGLNVHSARINTLGERAEDTFLV 840
Query: 120 T 120
T
Sbjct: 841 T 841
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106
P+V I+ T++E++ DR G L + A+ L LN+ A+V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 881
>sp|A0Q8W4|Y052_MYCA1 UPF0301 protein MAV_0052 OS=Mycobacterium avium (strain 104)
GN=MAV_0052 PE=3 SV=1
Length = 201
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 23 KANAAFVTGSPRFGNKPLCCPARRRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGD 82
K +AA + R G P P R DG V++DLD+DPDA I + G
Sbjct: 87 KRDAALCLATLRVGADPQGAPGLRHVDGR----------VVMVDLDADPDA-IAPLVEGV 135
Query: 83 RLGA 86
R+ A
Sbjct: 136 RIFA 139
>sp|Q744T3|Y045_MYCPA UPF0301 protein MAP_0045 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=MAP_0045 PE=3 SV=1
Length = 201
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 23 KANAAFVTGSPRFGNKPLCCPARRRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGD 82
K +AA + R G P P R DG V++DLD+DPDA I + G
Sbjct: 87 KRDAALCLATLRVGADPQGAPGLRHVDGR----------VVMVDLDADPDA-IAPLVEGV 135
Query: 83 RLGA 86
R+ A
Sbjct: 136 RIFA 139
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 44 ARRRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103
ARR G ++ P+V I+ T++E++ DR G L + A+ L LN+
Sbjct: 821 ARRTTRGKQHKAFSV-EPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIAS 879
Query: 104 ANV 106
A+V
Sbjct: 880 AHV 882
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 44 ARRRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103
ARR G ++ P+V I+ T++E++ DR G L + A+ L LN+
Sbjct: 821 ARRTTRGKQHKAFSV-EPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIAS 879
Query: 104 ANV 106
A+V
Sbjct: 880 AHV 882
>sp|Q721B9|MOAA_LISMF Cyclic pyranopterin monophosphate synthase OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=moaA PE=3
SV=1
Length = 333
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108
+V I LDS + IT G RL +LD + + +GL +K NV L
Sbjct: 117 RVNISLDSLHEDRFKAITRGGRLQKVLDGIQKAEEVGLFPIKLNVVL 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,635,340
Number of Sequences: 539616
Number of extensions: 1933465
Number of successful extensions: 3799
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3769
Number of HSP's gapped (non-prelim): 38
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)