Query 033217
Match_columns 125
No_of_seqs 115 out of 209
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 99.9 5E-23 1.1E-27 140.5 7.9 51 73-123 1-51 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 99.9 2.9E-22 6.3E-27 137.9 7.8 51 73-123 1-51 (75)
3 PRK01759 glnD PII uridylyl-tra 99.8 4E-20 8.7E-25 168.9 9.3 66 57-123 768-833 (854)
4 PRK05007 PII uridylyl-transfer 99.8 5.8E-20 1.3E-24 168.4 9.5 67 56-123 792-858 (884)
5 cd04896 ACT_ACR-like_3 ACT dom 99.8 8E-20 1.7E-24 125.8 7.2 48 74-122 1-50 (75)
6 COG2844 GlnD UTP:GlnB (protein 99.7 4.1E-17 8.9E-22 150.6 7.9 67 56-123 775-841 (867)
7 TIGR01693 UTase_glnD [Protein- 99.7 2.2E-16 4.7E-21 143.3 9.8 66 57-123 764-829 (850)
8 PRK04374 PII uridylyl-transfer 99.7 2.8E-16 6.2E-21 144.6 9.7 68 55-123 779-846 (869)
9 PRK00275 glnD PII uridylyl-tra 99.6 8.7E-16 1.9E-20 141.4 9.7 66 57-123 799-864 (895)
10 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.5E-15 3.3E-20 101.1 7.3 50 74-123 1-50 (74)
11 PRK03381 PII uridylyl-transfer 99.6 2.3E-15 4.9E-20 136.7 9.5 66 57-123 692-757 (774)
12 cd04927 ACT_ACR-like_2 Second 99.6 4.1E-15 9E-20 100.0 7.8 49 75-123 2-51 (76)
13 PRK05092 PII uridylyl-transfer 99.6 3.7E-15 8E-20 137.0 9.9 67 56-123 827-893 (931)
14 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.1E-14 2.3E-19 96.0 7.6 51 73-123 1-52 (73)
15 PRK03059 PII uridylyl-transfer 99.6 9E-15 2E-19 134.2 9.4 66 56-122 770-835 (856)
16 TIGR01693 UTase_glnD [Protein- 99.4 2.1E-12 4.7E-17 117.5 9.6 65 59-123 654-719 (850)
17 PRK01759 glnD PII uridylyl-tra 99.4 2.2E-12 4.9E-17 118.4 9.5 64 60-123 664-728 (854)
18 cd04926 ACT_ACR_4 C-terminal 99.3 8.4E-12 1.8E-16 82.5 7.8 50 74-123 2-51 (72)
19 PRK05007 PII uridylyl-transfer 99.3 8.4E-12 1.8E-16 115.0 9.5 64 60-123 688-752 (884)
20 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 4.2E-11 9.2E-16 76.2 7.5 50 74-123 1-50 (70)
21 PRK05092 PII uridylyl-transfer 99.0 2.7E-09 5.9E-14 98.7 9.4 63 61-123 720-783 (931)
22 cd04873 ACT_UUR-ACR-like ACT d 98.9 9.8E-09 2.1E-13 64.3 7.5 50 74-123 1-50 (70)
23 cd04928 ACT_TyrKc Uncharacteri 98.9 7.1E-09 1.5E-13 70.4 7.1 48 76-123 4-52 (68)
24 PRK00275 glnD PII uridylyl-tra 98.8 2.4E-08 5.2E-13 92.7 9.2 63 61-123 689-755 (895)
25 PRK03381 PII uridylyl-transfer 98.8 2.8E-08 6E-13 90.9 9.4 64 59-123 586-649 (774)
26 PF01842 ACT: ACT domain; Int 98.7 1.2E-07 2.7E-12 58.7 7.4 49 74-122 1-51 (66)
27 PRK03059 PII uridylyl-transfer 98.5 4.8E-07 1E-11 83.8 9.0 63 61-123 666-729 (856)
28 PRK00227 glnD PII uridylyl-tra 98.4 2.3E-07 5E-12 84.9 4.7 83 29-122 590-676 (693)
29 PRK04374 PII uridylyl-transfer 98.4 1.6E-06 3.4E-11 80.8 9.4 63 61-123 677-741 (869)
30 PF13740 ACT_6: ACT domain; PD 98.2 1.1E-05 2.4E-10 53.7 6.9 47 74-120 3-49 (76)
31 cd04870 ACT_PSP_1 CT domains f 98.1 1.3E-05 2.7E-10 52.9 5.6 46 75-120 1-46 (75)
32 cd04894 ACT_ACR-like_1 ACT dom 98.0 1.4E-05 3E-10 55.3 4.7 49 74-122 1-49 (69)
33 cd04875 ACT_F4HF-DF N-terminal 97.9 2.3E-05 4.9E-10 51.2 5.2 43 75-119 1-43 (74)
34 cd04869 ACT_GcvR_2 ACT domains 97.8 6.5E-05 1.4E-09 49.0 5.7 45 75-119 1-47 (81)
35 cd04893 ACT_GcvR_1 ACT domains 97.8 6.2E-05 1.3E-09 50.3 5.7 40 74-113 2-41 (77)
36 PF13291 ACT_4: ACT domain; PD 97.7 0.00018 3.8E-09 47.4 7.0 39 72-110 5-43 (80)
37 cd04877 ACT_TyrR N-terminal AC 97.6 0.00017 3.8E-09 47.2 5.1 34 76-109 3-36 (74)
38 cd04872 ACT_1ZPV ACT domain pr 97.6 0.00017 3.7E-09 48.7 4.9 41 74-114 2-42 (88)
39 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.00077 1.7E-08 43.1 6.9 35 76-110 2-36 (74)
40 PRK00194 hypothetical protein; 97.4 0.00028 6E-09 47.5 4.8 40 73-112 3-42 (90)
41 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.4 0.00092 2E-08 41.6 6.8 47 75-121 2-49 (79)
42 COG2844 GlnD UTP:GlnB (protein 97.4 0.00045 9.8E-09 65.3 7.6 64 60-123 671-735 (867)
43 cd04878 ACT_AHAS N-terminal AC 97.4 0.0014 3.1E-08 40.1 7.0 47 75-121 2-49 (72)
44 cd04886 ACT_ThrD-II-like C-ter 97.3 0.0012 2.6E-08 40.5 6.1 34 76-109 1-34 (73)
45 cd04879 ACT_3PGDH-like ACT_3PG 97.3 0.0013 2.9E-08 40.0 6.1 44 76-119 2-47 (71)
46 cd02116 ACT ACT domains are co 97.2 0.0027 5.8E-08 35.0 6.4 46 76-121 1-47 (60)
47 cd04889 ACT_PDH-BS-like C-term 97.2 0.0018 3.9E-08 39.8 5.8 46 76-121 1-47 (56)
48 cd04903 ACT_LSD C-terminal ACT 97.0 0.0043 9.4E-08 37.9 6.7 33 76-108 2-34 (71)
49 PRK11589 gcvR glycine cleavage 97.0 0.0011 2.4E-08 52.2 5.0 46 74-119 96-143 (190)
50 cd04908 ACT_Bt0572_1 N-termina 97.0 0.004 8.7E-08 39.8 6.6 38 75-112 3-40 (66)
51 cd04874 ACT_Af1403 N-terminal 97.0 0.0054 1.2E-07 37.7 7.0 36 75-110 2-37 (72)
52 PRK11589 gcvR glycine cleavage 97.0 0.0012 2.7E-08 52.0 4.8 50 70-119 5-54 (190)
53 cd04876 ACT_RelA-SpoT ACT dom 96.9 0.006 1.3E-07 35.5 6.4 37 76-112 1-37 (71)
54 cd04882 ACT_Bt0572_2 C-termina 96.9 0.0037 7.9E-08 38.5 5.2 36 75-110 1-36 (65)
55 cd04888 ACT_PheB-BS C-terminal 96.8 0.0046 1E-07 39.4 5.5 34 76-109 3-36 (76)
56 PRK06027 purU formyltetrahydro 96.7 0.006 1.3E-07 50.4 6.7 38 71-108 4-41 (286)
57 cd04909 ACT_PDH-BS C-terminal 96.5 0.013 2.7E-07 37.1 5.9 46 75-120 3-50 (69)
58 PRK08577 hypothetical protein; 96.3 0.031 6.6E-07 40.9 7.9 49 62-110 43-93 (136)
59 COG3830 ACT domain-containing 96.3 0.0054 1.2E-07 44.3 3.8 31 73-103 3-33 (90)
60 cd04884 ACT_CBS C-terminal ACT 96.3 0.024 5.3E-07 36.5 6.4 34 76-109 2-35 (72)
61 PRK13011 formyltetrahydrofolat 96.0 0.017 3.7E-07 47.9 6.0 44 74-119 8-51 (286)
62 cd04905 ACT_CM-PDT C-terminal 96.0 0.051 1.1E-06 35.8 7.1 46 74-119 2-48 (80)
63 PRK13010 purU formyltetrahydro 96.0 0.014 3E-07 48.6 5.2 45 73-119 9-53 (289)
64 TIGR00655 PurU formyltetrahydr 95.9 0.018 4E-07 47.6 5.8 35 75-109 2-36 (280)
65 PRK04435 hypothetical protein; 95.8 0.046 1E-06 41.1 6.9 47 65-111 61-107 (147)
66 PRK11092 bifunctional (p)ppGpp 95.8 0.031 6.7E-07 51.8 7.1 51 63-113 615-666 (702)
67 cd04902 ACT_3PGDH-xct C-termin 95.6 0.04 8.7E-07 34.5 5.1 32 77-108 3-34 (73)
68 cd04883 ACT_AcuB C-terminal AC 95.6 0.097 2.1E-06 33.0 6.8 35 74-108 2-36 (72)
69 cd04901 ACT_3PGDH C-terminal A 95.6 0.01 2.2E-07 37.2 2.2 34 78-111 4-37 (69)
70 TIGR00691 spoT_relA (p)ppGpp s 95.5 0.049 1.1E-06 50.1 7.1 51 63-113 599-650 (683)
71 TIGR00119 acolac_sm acetolacta 95.4 0.084 1.8E-06 40.7 7.3 36 75-110 3-38 (157)
72 PRK07334 threonine dehydratase 95.3 0.082 1.8E-06 44.9 7.5 37 73-109 326-362 (403)
73 COG0317 SpoT Guanosine polypho 95.3 0.068 1.5E-06 50.0 7.4 55 63-117 616-671 (701)
74 PRK10872 relA (p)ppGpp synthet 95.1 0.1 2.2E-06 49.0 8.2 48 63-110 655-703 (743)
75 PRK00227 glnD PII uridylyl-tra 94.8 0.089 1.9E-06 48.9 6.9 46 74-120 547-593 (693)
76 CHL00100 ilvH acetohydroxyacid 94.8 0.11 2.3E-06 40.9 6.3 34 75-108 4-37 (174)
77 PRK11895 ilvH acetolactate syn 94.7 0.17 3.7E-06 39.3 7.2 36 75-110 4-39 (161)
78 COG2716 GcvR Glycine cleavage 94.3 0.032 7E-07 44.6 2.4 50 70-119 2-51 (176)
79 PRK08178 acetolactate synthase 94.2 0.26 5.6E-06 35.9 6.8 44 67-111 3-46 (96)
80 COG2716 GcvR Glycine cleavage 93.5 0.071 1.5E-06 42.7 2.9 35 69-103 88-122 (176)
81 cd04898 ACT_ACR-like_4 ACT dom 93.3 0.025 5.5E-07 40.0 0.2 32 76-107 3-34 (77)
82 PRK06737 acetolactate synthase 93.2 0.45 9.7E-06 32.9 6.3 33 75-107 4-36 (76)
83 cd04904 ACT_AAAH ACT domain of 92.4 0.26 5.7E-06 32.5 4.1 41 77-119 4-47 (74)
84 cd04931 ACT_PAH ACT domain of 92.3 0.4 8.7E-06 33.7 5.1 54 66-119 7-61 (90)
85 PRK13562 acetolactate synthase 92.1 0.59 1.3E-05 33.2 5.8 37 75-111 4-40 (84)
86 cd04871 ACT_PSP_2 ACT domains 92.1 0.1 2.3E-06 35.7 1.9 29 75-103 1-30 (84)
87 cd04880 ACT_AAAH-PDT-like ACT 92.0 0.32 6.9E-06 31.4 4.0 41 79-119 5-46 (75)
88 PF13840 ACT_7: ACT domain ; P 91.4 0.48 1E-05 30.8 4.4 47 70-121 3-53 (65)
89 PRK08818 prephenate dehydrogen 90.9 0.76 1.7E-05 39.6 6.3 47 72-119 294-341 (370)
90 PRK11152 ilvM acetolactate syn 90.8 1.3 2.9E-05 30.5 6.3 34 75-108 5-38 (76)
91 cd04891 ACT_AK-LysC-DapG-like_ 90.3 1.4 3E-05 25.8 5.4 28 80-107 8-35 (61)
92 cd04885 ACT_ThrD-I Tandem C-te 90.1 1.2 2.6E-05 28.6 5.4 32 76-108 1-32 (68)
93 COG0788 PurU Formyltetrahydrof 90.1 0.73 1.6E-05 39.4 5.4 46 72-119 6-51 (287)
94 PRK06382 threonine dehydratase 89.0 0.69 1.5E-05 39.5 4.6 38 69-106 326-363 (406)
95 PF13710 ACT_5: ACT domain; PD 88.9 1.7 3.6E-05 28.4 5.4 27 82-108 1-27 (63)
96 COG4747 ACT domain-containing 88.7 0.95 2.1E-05 35.1 4.7 39 75-113 5-43 (142)
97 cd04906 ACT_ThrD-I_1 First of 88.7 2.4 5.2E-05 28.5 6.3 27 75-103 3-29 (85)
98 PRK06349 homoserine dehydrogen 88.3 1.8 3.8E-05 37.4 6.7 49 74-122 349-397 (426)
99 TIGR00719 sda_beta L-serine de 87.7 2.4 5.2E-05 33.4 6.6 53 62-114 134-191 (208)
100 cd04929 ACT_TPH ACT domain of 87.6 1.1 2.4E-05 30.2 4.0 42 78-119 5-47 (74)
101 cd04913 ACT_AKii-LysC-BS-like_ 87.0 1.9 4.2E-05 26.3 4.6 26 81-106 10-35 (75)
102 COG4747 ACT domain-containing 86.8 2.2 4.8E-05 33.1 5.7 39 74-112 70-108 (142)
103 PRK11899 prephenate dehydratas 86.6 3.9 8.4E-05 34.1 7.5 47 73-119 194-241 (279)
104 PRK11790 D-3-phosphoglycerate 85.1 1.4 3E-05 38.1 4.3 58 58-117 325-382 (409)
105 cd04868 ACT_AK-like ACT domain 84.7 2.4 5.3E-05 24.3 4.0 32 75-106 2-36 (60)
106 cd04930 ACT_TH ACT domain of t 83.9 3 6.6E-05 30.5 5.1 31 74-104 42-72 (115)
107 cd04919 ACT_AK-Hom3_2 ACT doma 82.8 7.9 0.00017 23.8 6.0 35 74-108 2-39 (66)
108 TIGR01127 ilvA_1Cterm threonin 82.2 1.9 4.2E-05 36.0 3.9 36 71-106 303-338 (380)
109 COG1707 ACT domain-containing 81.7 3.1 6.7E-05 34.1 4.8 37 76-112 5-41 (218)
110 PRK10622 pheA bifunctional cho 81.0 6.9 0.00015 33.9 7.0 47 73-119 297-344 (386)
111 COG0077 PheA Prephenate dehydr 80.0 6.7 0.00014 33.2 6.4 48 72-119 193-241 (279)
112 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.0 3.9 8.4E-05 24.9 3.8 33 74-106 2-37 (66)
113 COG2150 Predicted regulator of 80.0 3.7 8.1E-05 32.8 4.6 35 72-106 92-128 (167)
114 PRK08198 threonine dehydratase 78.0 4.4 9.5E-05 34.2 4.8 39 69-107 323-361 (404)
115 PRK10820 DNA-binding transcrip 75.3 4.1 8.9E-05 36.1 4.0 35 76-110 3-37 (520)
116 cd04892 ACT_AK-like_2 ACT doma 73.8 6.6 0.00014 22.9 3.6 32 75-106 2-36 (65)
117 cd04937 ACT_AKi-DapG-BS_2 ACT 73.1 18 0.00039 22.7 5.7 29 74-102 2-33 (64)
118 PRK06545 prephenate dehydrogen 71.4 12 0.00026 31.3 5.7 38 71-108 288-325 (359)
119 cd04890 ACT_AK-like_1 ACT doma 71.0 9.1 0.0002 23.5 3.8 36 81-120 11-46 (62)
120 cd04924 ACT_AK-Arch_2 ACT doma 70.4 9.8 0.00021 23.0 3.8 35 74-108 2-39 (66)
121 cd04921 ACT_AKi-HSDH-ThrA-like 67.8 27 0.00059 22.2 5.7 34 74-107 2-38 (80)
122 cd04932 ACT_AKiii-LysC-EC_1 AC 65.8 12 0.00026 25.0 3.8 31 74-104 2-35 (75)
123 cd04935 ACT_AKiii-DAPDC_1 ACT 64.2 14 0.0003 24.6 3.9 25 80-104 11-35 (75)
124 cd04916 ACT_AKiii-YclM-BS_2 AC 63.4 30 0.00066 20.8 5.9 35 74-108 2-39 (66)
125 PRK13581 D-3-phosphoglycerate 60.9 16 0.00036 32.5 4.8 41 68-108 447-487 (526)
126 PRK11898 prephenate dehydratas 60.6 22 0.00047 29.4 5.2 47 73-119 196-244 (283)
127 cd04923 ACT_AK-LysC-DapG-like_ 58.6 24 0.00053 20.8 4.0 31 75-105 2-35 (63)
128 PLN02317 arogenate dehydratase 58.4 44 0.00096 29.5 6.9 33 73-105 283-315 (382)
129 TIGR01270 Trp_5_monoox tryptop 57.6 21 0.00046 32.4 4.9 38 66-103 24-61 (464)
130 PRK08526 threonine dehydratase 57.3 19 0.0004 31.2 4.4 38 69-106 322-359 (403)
131 PRK06635 aspartate kinase; Rev 55.6 20 0.00044 30.1 4.3 34 71-104 338-374 (404)
132 cd04936 ACT_AKii-LysC-BS-like_ 52.7 35 0.00076 20.1 4.0 30 76-105 3-35 (63)
133 cd04912 ACT_AKiii-LysC-EC-like 52.4 29 0.00064 22.5 3.8 31 74-104 2-35 (75)
134 TIGR01268 Phe4hydrox_tetr phen 50.3 33 0.00071 30.9 4.9 45 73-119 16-63 (436)
135 TIGR01327 PGDH D-3-phosphoglyc 47.8 21 0.00047 31.7 3.4 44 71-114 449-494 (525)
136 COG3283 TyrR Transcriptional r 47.6 19 0.00041 32.9 3.0 35 76-110 3-37 (511)
137 TIGR02079 THD1 threonine dehyd 47.6 99 0.0021 26.7 7.3 37 69-105 321-357 (409)
138 COG4492 PheB ACT domain-contai 47.1 22 0.00048 28.0 3.0 36 70-105 69-104 (150)
139 TIGR00656 asp_kin_monofn aspar 45.8 40 0.00087 28.3 4.6 33 71-103 335-370 (401)
140 PRK08639 threonine dehydratase 45.4 41 0.0009 28.9 4.7 36 69-104 332-367 (420)
141 KOG2663 Acetolactate synthase, 42.9 24 0.00052 30.5 2.8 36 72-107 76-111 (309)
142 cd04933 ACT_AK1-AT_1 ACT domai 42.5 30 0.00065 23.6 2.8 25 80-104 11-35 (78)
143 COG2061 ACT-domain-containing 42.0 26 0.00056 28.1 2.7 33 76-108 8-40 (170)
144 PF05117 DUF695: Family of unk 41.3 58 0.0013 23.4 4.3 33 89-122 67-99 (136)
145 PF05088 Bac_GDH: Bacterial NA 39.7 51 0.0011 34.0 5.0 43 61-104 6-48 (1528)
146 COG0440 IlvH Acetolactate synt 37.9 34 0.00073 27.1 2.7 32 75-106 6-37 (163)
147 cd07247 SgaA_N_like N-terminal 36.1 1.2E+02 0.0026 19.6 6.2 46 72-123 61-106 (114)
148 cd07253 Glo_EDI_BRP_like_2 Thi 35.6 1.2E+02 0.0026 19.4 4.8 37 87-123 79-116 (125)
149 PRK06635 aspartate kinase; Rev 34.2 98 0.0021 26.0 5.2 34 73-106 262-296 (404)
150 PRK08210 aspartate kinase I; R 33.7 79 0.0017 26.8 4.6 37 71-107 269-306 (403)
151 PRK08210 aspartate kinase I; R 33.1 89 0.0019 26.5 4.7 36 71-108 337-375 (403)
152 cd04934 ACT_AK-Hom3_1 CT domai 31.3 47 0.001 22.0 2.3 23 82-104 13-35 (73)
153 cd01423 MGS_CPS_I_III Methylgl 31.2 58 0.0013 22.7 2.9 27 75-102 4-30 (116)
154 PRK09224 threonine dehydratase 30.2 2.4E+02 0.0052 25.2 7.2 32 70-103 325-356 (504)
155 PRK12483 threonine dehydratase 29.4 2.5E+02 0.0054 25.6 7.2 34 70-105 342-375 (521)
156 TIGR00657 asp_kinases aspartat 28.4 1.1E+02 0.0024 26.3 4.6 35 71-105 376-413 (441)
157 PLN00211 predicted protein; Pr 28.0 18 0.00038 24.7 -0.2 9 34-42 9-17 (61)
158 cd04920 ACT_AKiii-DAPDC_2 ACT 27.9 1.6E+02 0.0035 18.5 5.2 27 75-101 2-31 (63)
159 COG2902 NAD-specific glutamate 27.4 1.1E+02 0.0024 32.0 5.0 44 61-104 74-119 (1592)
160 PF05088 Bac_GDH: Bacterial NA 27.2 1.8E+02 0.0039 30.3 6.4 54 69-122 485-543 (1528)
161 PF03551 PadR: Transcriptional 27.2 1.8E+02 0.0038 18.7 5.3 39 83-122 30-68 (75)
162 PF02319 E2F_TDP: E2F/DP famil 26.6 53 0.0012 21.7 1.9 16 87-102 46-61 (71)
163 cd01421 IMPCH Inosine monophos 26.5 1E+02 0.0023 24.7 3.9 25 75-102 4-28 (187)
164 TIGR00656 asp_kin_monofn aspar 26.5 1.2E+02 0.0025 25.6 4.3 34 71-104 258-294 (401)
165 cd04918 ACT_AK1-AT_2 ACT domai 26.2 1.7E+02 0.0037 18.3 5.0 34 75-108 3-38 (65)
166 cd04914 ACT_AKi-DapG-BS_1 ACT 26.0 75 0.0016 20.4 2.5 25 82-106 11-35 (67)
167 cd08357 Glo_EDI_BRP_like_18 Th 25.8 1.5E+02 0.0033 19.3 4.0 39 85-123 76-116 (125)
168 PRK06291 aspartate kinase; Pro 25.7 1.2E+02 0.0026 26.6 4.4 35 71-105 319-356 (465)
169 PF14830 Haemocyan_bet_s: Haem 25.4 18 0.00039 26.7 -0.6 14 87-100 57-70 (103)
170 COG0813 DeoD Purine-nucleoside 25.0 1.2E+02 0.0027 25.5 4.2 56 61-121 102-164 (236)
171 PF00903 Glyoxalase: Glyoxalas 23.8 2E+02 0.0044 18.3 5.6 37 86-123 86-122 (128)
172 COG3978 Acetolactate synthase 23.6 2.9E+02 0.0063 20.0 5.5 39 75-113 5-45 (86)
173 PF07530 PRE_C2HC: Associated 22.6 1.6E+02 0.0035 19.6 3.7 31 89-119 3-35 (68)
174 PRK07431 aspartate kinase; Pro 22.0 1.6E+02 0.0034 26.5 4.5 35 71-105 517-554 (587)
175 cd07263 Glo_EDI_BRP_like_16 Th 21.9 2.1E+02 0.0045 18.1 4.0 34 87-123 78-111 (119)
176 TIGR01124 ilvA_2Cterm threonin 21.9 4.2E+02 0.0091 23.8 7.1 32 70-103 322-353 (499)
177 PRK08841 aspartate kinase; Val 21.8 1.6E+02 0.0034 25.5 4.4 33 71-103 316-348 (392)
178 PF07524 Bromo_TP: Bromodomain 21.8 47 0.001 21.9 0.9 22 79-101 54-75 (77)
179 cd04915 ACT_AK-Ectoine_2 ACT d 21.1 2.3E+02 0.005 17.9 6.5 33 74-106 3-37 (66)
180 PF12681 Glyoxalase_2: Glyoxal 21.0 2.3E+02 0.005 17.9 5.8 37 85-123 65-101 (108)
181 cd04907 ACT_ThrD-I_2 Second of 20.8 2.8E+02 0.006 18.7 5.9 42 75-117 3-44 (81)
182 COG3603 Uncharacterized conser 20.7 1.3E+02 0.0028 23.3 3.2 50 56-109 51-100 (128)
183 PRK09034 aspartate kinase; Rev 20.7 1.5E+02 0.0033 25.9 4.1 34 71-104 306-342 (454)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.89 E-value=5e-23 Score=140.55 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+|||||.++||||||++|+++|+++||+|++|||+|+|||++|+|||+|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 699999999999999999999999999999999999999999999999875
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.87 E-value=2.9e-22 Score=137.87 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+|||||.++||||||++|+++|.++|++|+.|+|+|+||+++|+|||+|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 699999999999999999999999999999999999999999999999875
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.81 E-value=4e-20 Score=168.93 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.+| |+|.|||++|+++|+|||.+.|||||||+|+++|.++|++|+.|||+|.||+++|+|||+|.+
T Consensus 768 ~~~-~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 768 HVK-TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred CCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 456 899999999999999999999999999999999999999999999999999999999999864
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.81 E-value=5.8e-20 Score=168.39 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=63.8
Q ss_pred CCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 56 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 56 ~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
..+| |+|.|||++|+++|+|||.+.||||||++|+++|.++||+|+.|||+|.||+++|+|||+|.+
T Consensus 792 ~~~~-~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~ 858 (884)
T PRK05007 792 FNVP-TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD 858 (884)
T ss_pred CCCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence 4456 899999999999999999999999999999999999999999999999999999999999864
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=8e-20 Score=125.76 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE--ecCCceeEEEEEeec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAITKA 122 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is--T~Gerv~DvFYVTD~ 122 (125)
||+||.+.|||||||+|+++|+++|++|+.|||+ |+||+++|+||| |.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~ 50 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS 50 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC
Confidence 7999999999999999999999999999999999 999999999999 43
No 6
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.1e-17 Score=150.65 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=64.4
Q ss_pred CCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 56 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 56 ~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
..|| |+|.|.|+.++..|++||.+.||||||++++++|.++||+|+.|||+|.||+++|+|||||.+
T Consensus 775 f~i~-p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~ 841 (867)
T COG2844 775 FPIP-PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD 841 (867)
T ss_pred eccC-CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence 4567 899999999999999999999999999999999999999999999999999999999999875
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.67 E-value=2.2e-16 Score=143.34 Aligned_cols=66 Identities=29% Similarity=0.414 Sum_probs=63.0
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.+| |+|.|||+.|+++|+|+|.+.||||||++|+++|.++|++|+.|+|+|.|++++|+|||++..
T Consensus 764 ~~~-~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~ 829 (850)
T TIGR01693 764 AVP-PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829 (850)
T ss_pred CCC-CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence 355 899999999999999999999999999999999999999999999999999999999999764
No 8
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.66 E-value=2.8e-16 Score=144.58 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 55 TDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 55 ~~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
...+| |+|.|+|+.++.+|+|||.+.||||||++|+++|+++|++|+.|+|+|.|++++|+|||+|.+
T Consensus 779 ~~~~~-~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 779 HFRFA-PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCCCC-CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 34567 899999999999999999999999999999999999999999999999999999999999865
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.63 E-value=8.7e-16 Score=141.41 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=63.3
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.++ |+|.|+|+.++.+|+|+|.+.||||||++|+++|.++||+|+.|+|+|.|++++|+|||+|.+
T Consensus 799 ~~~-~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 799 AFP-TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CCC-CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 456 899999999999999999999999999999999999999999999999999999999999864
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=1.5e-15 Score=101.13 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=48.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
|||||.+.||||||++|+++|+++|++|+.|+|.|.|+++.|+|||+|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 79999999999999999999999999999999999999999999999864
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.61 E-value=2.3e-15 Score=136.70 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=63.0
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.+| |+|.|+|+.++++|+|||.+.||||||++|+++|+++|++|+.|+|+|.|++++|+|||+|.+
T Consensus 692 ~~~-~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 692 AAP-PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred CCC-cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 455 799999999999999999999999999999999999999999999999999999999999875
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=4.1e-15 Score=100.04 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=47.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEEeecc
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 123 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYVTD~~ 123 (125)
++||.+.||||||++++++|+++||+|+.|+|+| .|+++.|+|||+|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 6899999999999999999999999999999996 999999999999865
No 13
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.60 E-value=3.7e-15 Score=137.04 Aligned_cols=67 Identities=30% Similarity=0.458 Sum_probs=63.4
Q ss_pred CCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 56 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 56 ~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
..+| |+|.|||+.++.+|+|+|.+.||||||++|+++|+++|++|+.|+|+|.|++++|+|||+|.+
T Consensus 827 ~~~~-~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~ 893 (931)
T PRK05092 827 FHVP-PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF 893 (931)
T ss_pred CCCC-CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence 3456 899999999999999999999999999999999999999999999999999999999999854
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=1.1e-14 Score=96.03 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=47.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec-CCceeEEEEEeecc
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 123 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Gerv~DvFYVTD~~ 123 (125)
++-|+|.+.||||||++++++|.++||+|+.|+|.|. ++++.|+|||+|.+
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 4679999999999999999999999999999999887 68999999999864
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.57 E-value=9e-15 Score=134.21 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 56 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 56 ~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
..+| |+|.|+|+.++.+|+|+|.+.||||||++|+++|..+|++|+.|+|+|.|++++|+|||++.
T Consensus 770 ~~~~-~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~ 835 (856)
T PRK03059 770 FPIT-PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835 (856)
T ss_pred CCCC-ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC
Confidence 4456 79999999999999999999999999999999999999999999999999999999999754
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.37 E-value=2.1e-12 Score=117.53 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEEeecc
Q 033217 59 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 123 (125)
Q Consensus 59 p~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYVTD~~ 123 (125)
+.|.|.++|+.+..+|.|+|.+.||||||++|+.+|+.+||+|++|+|. |.|++++|+|||+|.+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 3479999999999999999999999999999999999999999999999 8999999999999875
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=2.2e-12 Score=118.44 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEEeecc
Q 033217 60 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 123 (125)
Q Consensus 60 ~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYVTD~~ 123 (125)
+|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|++|+|.| .++++.|+|||+|.+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~ 728 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN 728 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC
Confidence 3899999999999999999999999999999999999999999999988 999999999999875
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=8.4e-12 Score=82.53 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=47.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
|-|+|...||||+|++++++|+++|++|.+|+|.|.++++.|+|||+|.+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 56899999999999999999999999999999999999999999999865
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.31 E-value=8.4e-12 Score=115.05 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred CCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEEeecc
Q 033217 60 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 123 (125)
Q Consensus 60 ~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYVTD~~ 123 (125)
+|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|.|.++ ++.|+|||+|.+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 3899999999999999999999999999999999999999999999999888 999999999875
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=4.2e-11 Score=76.19 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=47.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
|+++|.+.||||+|.+++++|.++|++|..+++.+.++++.|.|||++.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999998754
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.96 E-value=2.7e-09 Score=98.67 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=59.6
Q ss_pred CEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEEeecc
Q 033217 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 123 (125)
Q Consensus 61 PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYVTD~~ 123 (125)
+.|.+.++.+..+|.|.|.+.||||||.+|+.+|..+|+||..|+|.| .++.+.|+|||+|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 789999999999999999999999999999999999999999999988 788899999998764
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.90 E-value=9.8e-09 Score=64.30 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=46.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
|.+.|...||||+|++++++|++.|++|..+++.+.+++..++|+|.+.+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 47899999999999999999999999999999999988999999998754
No 23
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.90 E-value=7.1e-09 Score=70.37 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=43.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEEeecc
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 123 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYVTD~~ 123 (125)
|-|.+.|||||+.+++.+|..+||+|..|+|.| ..+++.|+|+|+|.+
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 568899999999999999999999999999996 466889999999875
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.79 E-value=2.4e-08 Score=92.66 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred CEEEEcCCCC---CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEEeecc
Q 033217 61 PKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 123 (125)
Q Consensus 61 PrV~IDN~as---~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYVTD~~ 123 (125)
|.|.+.++.. ..+|.|-|.+.|||||+.+++.+|..+||||..|+|. |..+.+.|+|||+|.+
T Consensus 689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 5677877775 5899999999999999999999999999999999995 5667899999999865
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.79 E-value=2.8e-08 Score=90.90 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 59 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 59 p~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
..|.|.+.++. ...|.|.|.+.|||||+.+|+.+|..+|+||..|+|.|.++++.|+|+|++.+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~ 649 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF 649 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 44789999888 99999999999999999999999999999999999999889999999999854
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.69 E-value=1.2e-07 Score=58.65 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC--ceeEEEEEeec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA 122 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--rv~DvFYVTD~ 122 (125)
|.|.|...||||+|.+++++|+++|+||..+++.+.++ +....+.+.|.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57899999999999999999999999999999999998 55555555443
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.51 E-value=4.8e-07 Score=83.81 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=57.4
Q ss_pred CEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEEeecc
Q 033217 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 123 (125)
Q Consensus 61 PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYVTD~~ 123 (125)
|.|.+.++.....|-|-|.+.|||||+.+++.+|..+||||..|+|. |..+.+.|+|+|+|.+
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 56779888888999999999999999999999999999999999995 5677899999998764
No 28
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.42 E-value=2.3e-07 Score=84.89 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=65.0
Q ss_pred eeeccCCCCCCeeeec----eeeecCCCCCCCCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 033217 29 VTGSPRFGNKPLCCPA----RRRYDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 29 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
+.+.+.|++.|--.-+ +..+.|.-..... .+|+|.+.. +|+||.+.||+|+|+.++++|. +|..|
T Consensus 590 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~ 658 (693)
T PRK00227 590 FDVRANGPQDFDPQEFLQAYKSGVYSELPDPAP-GITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWI 658 (693)
T ss_pred EEEecCCCCCCChHHHHHHHHHhhcCCCCcccC-CCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhH
Confidence 3456666666632222 4555666555543 448999885 8999999999999999999999 89999
Q ss_pred EEEecCCceeEEEEEeec
Q 033217 105 NVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 105 ~IsT~Gerv~DvFYVTD~ 122 (125)
+++|.|..++|+||+++.
T Consensus 659 ~~~~~g~~~~~~~~~~~~ 676 (693)
T PRK00227 659 TASTPGATMIVQAALKPG 676 (693)
T ss_pred hhcCCCcceEEEEEecCc
Confidence 999999999999999853
No 29
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.39 E-value=1.6e-06 Score=80.77 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=55.2
Q ss_pred CEEEE-cCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEEeecc
Q 033217 61 PKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 123 (125)
Q Consensus 61 PrV~I-DN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYVTD~~ 123 (125)
|.|.+ ........|-|-|.+.|||||+..|+.+|..+|+||..|+|.| ..+.+.|+|+|+|.+
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 34444 4466778999999999999999999999999999999999998 677899999999865
No 30
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.15 E-value=1.1e-05 Score=53.70 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=40.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEe
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 120 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVT 120 (125)
-||.|.+.||||++++++++|++.|.||...+.++-|+++.=.+-|.
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 47999999999999999999999999999999999999988777664
No 31
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.3e-05 Score=52.92 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=40.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEe
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 120 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVT 120 (125)
+|.|.+.||||++++++++|++.|+||...+-++.++++.=.|.|.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 5789999999999999999999999999998888887766666553
No 32
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=1.4e-05 Score=55.28 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
|+|.|+..|+.||=-|+.+++.+.||+|.++.++|||.|..=+|.|.-.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 6899999999999999999999999999999999999999999999643
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=2.3e-05 Score=51.20 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=36.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
||.|.+.||||++.+|++.|++.|++|...+-.++-+ ...||+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~ 43 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFM 43 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEE
Confidence 5899999999999999999999999999998886322 234766
No 34
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.82 E-value=6.5e-05 Score=49.03 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc--eeEEEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG--KHNKFAI 119 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger--v~DvFYV 119 (125)
+|.|.+.||||++.+|++.|++.|++|......+.+.. -...|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~ 47 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKA 47 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEE
Confidence 47899999999999999999999999999999998732 2345554
No 35
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.81 E-value=6.2e-05 Score=50.31 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=37.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
-|+.+.+.||||+.+.|++.|++.|.||........++++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 3788999999999999999999999999999999977766
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.75 E-value=0.00018 Score=47.37 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.8
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
.-+-++|.+.||+|+|.+|++++.+.|.+|....+.+..
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~ 43 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK 43 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence 456789999999999999999999999999999999953
No 37
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.58 E-value=0.00017 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
++|.+.||+|+|.+|++++++.|.+|.+..+.++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 7899999999999999999999999999999876
No 38
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00017 Score=48.71 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=36.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCcee
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 114 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~ 114 (125)
-+|.+.+.||||+++++++.|++.|+||....-.+.++++.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~ 42 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFT 42 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccE
Confidence 37899999999999999999999999999998888766543
No 39
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00077 Score=43.08 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
++|...||||+|.+|++++++.|.+|......+..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 68999999999999999999999999988887754
No 40
>PRK00194 hypothetical protein; Validated
Probab=97.45 E-value=0.00028 Score=47.51 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=35.5
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 112 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 112 (125)
.-++.|.+.||||++.++++.|++.|+||....-.+.+++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~ 42 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGY 42 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCe
Confidence 4589999999999999999999999999998887776553
No 41
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.00092 Score=41.64 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=37.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEEee
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITK 121 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYVTD 121 (125)
.+.|...||+|+|.+++++|.+.|.+|.+....+..+ ......++++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 4789999999999999999999999999998766533 3344444443
No 42
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00045 Score=65.34 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=58.6
Q ss_pred CCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc-eeEEEEEeecc
Q 033217 60 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY 123 (125)
Q Consensus 60 ~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger-v~DvFYVTD~~ 123 (125)
.|-|.+-+......|=|-|++.|+|.|+..++.++...|++|+.|.|.|--+. +.|+|+|.|.+
T Consensus 671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 36788888888899999999999999999999999999999999999997776 99999999765
No 43
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.37 E-value=0.0014 Score=40.07 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=38.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec-CCceeEEEEEee
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK 121 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Gerv~DvFYVTD 121 (125)
.+.+...|++|+|.++++.|++.|.+|.+....+. ++.....++.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 36788999999999999999999999999998876 555555555554
No 44
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0012 Score=40.49 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
++|...||||+|.+++++|++.|.+|.+-.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 4678899999999999999999999987776554
No 45
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.29 E-value=0.0013 Score=39.97 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC--CceeEEEEE
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 119 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G--erv~DvFYV 119 (125)
+.|...||+|+|.+++++|++.|++|....+...+ +...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57899999999999999999999999999998865 333334444
No 46
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.22 E-value=0.0027 Score=35.02 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC-CceeEEEEEee
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 121 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-erv~DvFYVTD 121 (125)
|++...|++|+|.++.++|.+.|++|......... ......++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46888999999999999999999999999987754 33445554444
No 47
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.16 E-value=0.0018 Score=39.84 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=38.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC-CceeEEEEEee
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 121 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-erv~DvFYVTD 121 (125)
++|.-.||||.|.++++.|.+.|.||...++...+ +...=.|-+-|
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988765 67776666544
No 48
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0043 Score=37.94 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+.+...||+|.|.++++.|++.|.+|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999888776
No 49
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.04 E-value=0.0011 Score=52.24 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=39.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC--ceeEEEEE
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAI 119 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--rv~DvFYV 119 (125)
-.|+|.+.||||+++++++.|++.|+||..=+=.+++. +-.+.|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHI 143 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence 47899999999999999999999999999888888875 55666654
No 50
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.004 Score=39.79 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=34.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 112 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 112 (125)
-+.|.-.|+||.|.++++.|.+.|+||..-++...+++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 46788999999999999999999999999999887764
No 51
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0054 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
.+.+...|++|.|.++++.|.+.|.+|.+....+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467899999999999999999999999988887764
No 52
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.99 E-value=0.0012 Score=51.97 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
..++-||.|.+.||||+.++|+++|++.|+||...+.+.-|+.+.=.+-|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 35788999999999999999999999999999999999999987655554
No 53
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.94 E-value=0.006 Score=35.55 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 112 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 112 (125)
++|...|++|.|.++.+.|.+.+++|....+...++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG 37 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence 4678999999999999999999999999998877643
No 54
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0037 Score=38.51 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
++.|.-.||||.|.++.+.|.+.|.+|.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 477888999999999999999999999888775554
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0046 Score=39.39 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
++|...||||+|.++.++|++.|.+|..-...+.
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6899999999999999999999999998876554
No 56
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.67 E-value=0.006 Score=50.41 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=35.3
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 71 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 71 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
...-+|.|.+.||||+.++|+++|+++|+||....-++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~ 41 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFV 41 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEE
Confidence 34568999999999999999999999999999999888
No 57
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.013 Score=37.15 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=35.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec--CCceeEEEEEe
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAIT 120 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Gerv~DvFYVT 120 (125)
-+.|.-.||||.|.++++.|.+.|++|........ +....-.|.+.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 36778899999999999999999999998877665 21333356563
No 58
>PRK08577 hypothetical protein; Provisional
Probab=96.32 E-value=0.031 Score=40.93 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=39.7
Q ss_pred EEEEcCC--CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 62 KVIIDLD--SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 62 rV~IDN~--as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
+|.+-.- .......++|.+.||+|+|.+++++|++.|.+|......+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 4444333 334478899999999999999999999999999988877654
No 59
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.31 E-value=0.0054 Score=44.30 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
..||.|.+.||||+-+.+.++|+++|+||..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 4689999999999999999999999999975
No 60
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.024 Score=36.50 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
+.|.-.||||-|.++++.|++.|.+|.+-...-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999987766554
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.04 E-value=0.017 Score=47.86 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=35.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
-+|.|.+.||||+.+++++.|+++|+||....-.+ +.-.+.|+.
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~--~~~~~~F~m 51 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFD--DRLSGRFFM 51 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeee--cCCCCeEEE
Confidence 57899999999999999999999999998766543 334445554
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.02 E-value=0.051 Score=35.84 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEE
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 119 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYV 119 (125)
|-+.+.-.|+||.|+++.+.|++.|+||.+-.....++ ...=.|||
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v 48 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI 48 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence 34666778999999999999999999998776544432 22345666
No 63
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.97 E-value=0.014 Score=48.59 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=35.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
.-||.|.+.||||+.+.|++.|++.|+||....=.+ +...+.|+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm 53 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFM 53 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEE
Confidence 348999999999999999999999999999876652 333444443
No 64
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.95 E-value=0.018 Score=47.61 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
+|.|.+.||||+.+.|++.|++.|+||....-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68899999999999999999999999998876664
No 65
>PRK04435 hypothetical protein; Provisional
Probab=95.79 E-value=0.046 Score=41.13 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=41.3
Q ss_pred EcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC
Q 033217 65 IDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 111 (125)
Q Consensus 65 IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 111 (125)
|+.....+-.-+.+...||||+|.+|.++|++.|.||..-..+...+
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~ 107 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQ 107 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 66678899999999999999999999999999999999877655443
No 66
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.78 E-value=0.031 Score=51.81 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=42.9
Q ss_pred EEEcCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 63 VIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 63 V~IDN~as-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
|..+++.+ ...+-|+|.+.||+|+|.+|+++|++.+.||.+....+..++.
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~ 666 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRV 666 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCE
Confidence 77876534 4556799999999999999999999999999999988876443
No 67
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.59 E-value=0.04 Score=34.53 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=28.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 77 EITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 77 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
=+...|+||.|.++++.|++.|++|..-....
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~ 34 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGR 34 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeec
Confidence 35789999999999999999999998887655
No 68
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.57 E-value=0.097 Score=32.98 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+-+.+.-.|+||.|..+.+.|.+.|.+|.+....-
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 35778899999999999999999999999876543
No 69
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.56 E-value=0.01 Score=37.17 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=29.4
Q ss_pred EEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC
Q 033217 78 ITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 111 (125)
Q Consensus 78 V~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 111 (125)
+.+.||||+|.+++++|++.|.+|......+.++
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~ 37 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQTRGE 37 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCC
Confidence 5789999999999999999999998877665543
No 70
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.47 E-value=0.049 Score=50.12 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=42.7
Q ss_pred EEEcCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 63 VIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 63 V~IDN~as-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
|..+.+.+ ...+-|+|.+.||+|+|.+|+++|++.+.+|.+..+.+..+..
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 77876533 4567799999999999999999999999999999998875443
No 71
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=95.43 E-value=0.084 Score=40.73 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
+++|...|+||.|.+++..|++.|+||.+-.+...+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 588999999999999999999999999988777665
No 72
>PRK07334 threonine dehydratase; Provisional
Probab=95.31 E-value=0.082 Score=44.90 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
-+-|+|.+.||+|+|.+|+++|++.+.+|.+....+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4789999999999999999999999999999998765
No 73
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.26 E-value=0.068 Score=50.02 Aligned_cols=55 Identities=25% Similarity=0.158 Sum_probs=47.9
Q ss_pred EEEcCC-CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEE
Q 033217 63 VIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 117 (125)
Q Consensus 63 V~IDN~-as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvF 117 (125)
|..+++ ....-.-|+|.+.||+|+|.+|+++|++.+.||.+....++.+++.+..
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 788888 4577888999999999999999999999999999999988866665554
No 74
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.14 E-value=0.1 Score=49.04 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=41.0
Q ss_pred EEEcCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 63 VIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 63 V~IDN~as-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
|.++++.+ ....-|+|.+.||+|||.+|+++|++.+.+|....+.++.
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~ 703 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT 703 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 77876533 3557799999999999999999999999999999998764
No 75
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=94.84 E-value=0.089 Score=48.87 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=40.5
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEe
Q 033217 74 TIVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 120 (125)
Q Consensus 74 TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVT 120 (125)
-.+.|.. +|++|+|..++.+|+-.|++|++|.+.+ ++..+..|-|.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~ 593 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVR 593 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEe
Confidence 4667777 9999999999999999999999999999 55557899886
No 76
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=94.80 E-value=0.11 Score=40.86 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
.+.|...||||+|.+++..|+..|+||.+=.+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 6899999999999999999999999999988755
No 77
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=94.72 E-value=0.17 Score=39.26 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
+++|...|+||.|.+++..|++.|.||.+-.+.-..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 578999999999999999999999999887776544
No 78
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.31 E-value=0.032 Score=44.59 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
.++|-||.+.+.||||+...++|+..+.|.|+..++++..|+.+.=+--|
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li 51 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI 51 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE
Confidence 35778999999999999999999999999999999999999988655444
No 79
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=94.23 E-value=0.26 Score=35.87 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC
Q 033217 67 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 111 (125)
Q Consensus 67 N~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 111 (125)
|.+..++| +.|...|+||+|..|+..|+.-|.||.+=.+.--++
T Consensus 3 ~~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~ 46 (96)
T PRK08178 3 NTTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQD 46 (96)
T ss_pred CCCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCC
Confidence 44445555 799999999999999999999999999876654444
No 80
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=93.46 E-value=0.071 Score=42.66 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.1
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
+.+.--.++|.+.||||++.++++.|.++|.+|..
T Consensus 88 a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 88 ANPAPVWVYVDANDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred CCCceEEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence 33444578999999999999999999999999865
No 81
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.31 E-value=0.025 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
||+++.-||-.+||++-||+.||.-|-+|.|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIg 34 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIG 34 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhh
Confidence 79999999999999999999999999999995
No 82
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=93.23 E-value=0.45 Score=32.94 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=30.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
.+.+...|+||.|..++..|+.-|.||.+=.+.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 478999999999999999999999999988876
No 83
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.41 E-value=0.26 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=29.3
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEEEec---CCceeEEEEE
Q 033217 77 EITFGDRLGALLDTMNALKNLGLNVVKANVFLD---SSGKHNKFAI 119 (125)
Q Consensus 77 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~---Gerv~DvFYV 119 (125)
-+.-.|+||.|+++.+.|++.|+|+.+ |.+- ++...=.|||
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffv 47 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFV 47 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEE
Confidence 344578999999999999999999875 4331 2223445666
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.29 E-value=0.4 Score=33.68 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=36.3
Q ss_pred cCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec-CCceeEEEEE
Q 033217 66 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 119 (125)
Q Consensus 66 DN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Gerv~DvFYV 119 (125)
++......|-+-+.-.|+||.|+++-+.|++.|+|+.+=.=--- ++...=.|||
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV 61 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI 61 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44444445666666799999999999999999999875322221 2222446776
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=92.15 E-value=0.59 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 111 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 111 (125)
++.+...|+||.|.+++..|+.-|.||.+=.++---+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~ 40 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQ 40 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCC
Confidence 5788999999999999999999999999988764333
No 86
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.13 E-value=0.1 Score=35.66 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.4
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCceEEE
Q 033217 75 IVEITFGD-RLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 75 VVEV~a~D-RpGLL~di~~aL~dLgL~I~~ 103 (125)
||-|-++| +.|.++.++++|+++|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 57789999 999999999999999999863
No 87
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.96 E-value=0.32 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=29.1
Q ss_pred EeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEE
Q 033217 79 TFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 119 (125)
Q Consensus 79 ~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYV 119 (125)
.-.|+||.|+++.+.|++.|+||.+-.=.- .++...=.|||
T Consensus 5 ~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i 46 (75)
T cd04880 5 SLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV 46 (75)
T ss_pred EeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 346999999999999999999998763221 23333445555
No 88
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.37 E-value=0.48 Score=30.76 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCcEEEEEEeC----CcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEee
Q 033217 70 DPDATIVEITFG----DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 121 (125)
Q Consensus 70 s~~~TVVEV~a~----DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD 121 (125)
.++...|.|.+. |.||.+..+.++|.+.|++|.--. | ...|.|.|..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 345677888877 899999999999999999997654 2 2355555543
No 89
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.85 E-value=0.76 Score=39.65 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=36.5
Q ss_pred CcEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 72 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
..+-+-+.-. |+||.|+++...|.+.|+||.+=.+ .......-.|||
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 3455555665 9999999999999999999999888 444444555887
No 90
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.78 E-value=1.3 Score=30.50 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
.+.+...|+||.|..++..++.-|.||.+=.+.-
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 5789999999999999999999999999887765
No 91
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.25 E-value=1.4 Score=25.77 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 80 FGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 80 a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
..|++|.+.++.++|.+.|++|..-...
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 3788999999999999999999876554
No 92
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.07 E-value=1.2 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+.|.-.||||-|..+.+.|.+ |.||..-+=.-
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 357789999999999999999 99988654443
No 93
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=90.06 E-value=0.73 Score=39.40 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=37.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
...++.|+..|++|+.+.|+..|.+.|+||..+.-.++ ...-.|+.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D--~~~g~FFm 51 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD--PETGRFFM 51 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc--cccCeEEE
Confidence 56899999999999999999999999999998877643 33334444
No 94
>PRK06382 threonine dehydratase; Provisional
Probab=89.04 E-value=0.69 Score=39.46 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
.+.+.+-++|.-.||||.|.++++.|.+.|.||.+-..
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 46788999999999999999999999999999976554
No 95
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=88.90 E-value=1.7 Score=28.38 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.7
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 82 DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 82 DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
|+||.|..|+..|..-|.+|.+=.++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999999988887
No 96
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=88.72 E-value=0.95 Score=35.12 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=35.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
-|.|+..||||=|..++.+|++.|+||+.=.|+--||--
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 478999999999999999999999999999998877743
No 97
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.71 E-value=2.4 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
++.|.-.||||-|..+.++|. +-+|..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 688999999999999999999 555553
No 98
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.32 E-value=1.8 Score=37.43 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=39.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
-.+.+...|+||.|.+++..|.+.|++|.+-.-....+.....++||+.
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 4788999999999999999999999999976554333356778888873
No 99
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=87.71 E-value=2.4 Score=33.40 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=42.0
Q ss_pred EEEEcC---CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec--CCcee
Q 033217 62 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKH 114 (125)
Q Consensus 62 rV~IDN---~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Gerv~ 114 (125)
.|.||. +..+....+=+...||||.+-.++..|.+.|+||..-.++-. |+++.
T Consensus 134 iv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai 191 (208)
T TIGR00719 134 ITEINGFAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL 191 (208)
T ss_pred EEEECCEEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence 455655 455666677788899999999999999999999999998864 44443
No 100
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.64 E-value=1.1 Score=30.24 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=29.4
Q ss_pred EEeCCcccHHHHHHHHHHhCCceEEEEEEEec-CCceeEEEEE
Q 033217 78 ITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 119 (125)
Q Consensus 78 V~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Gerv~DvFYV 119 (125)
+.-.|+||.|+++.+.|++.|+++.+=.=--- ++...=.|||
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i 47 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV 47 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44479999999999999999999875332221 2223456666
No 101
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=87.04 E-value=1.9 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 81 GDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 81 ~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
.|++|.+.++.++|.+.|++|..-.-
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 68999999999999999999985543
No 102
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=86.81 E-value=2.2 Score=33.11 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=33.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 112 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 112 (125)
-|+-|.-.|+||-|..|+.+|.+.++|+.-++-.+.-.+
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~ 108 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQ 108 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCc
Confidence 367888899999999999999999999998877664443
No 103
>PRK11899 prephenate dehydratase; Provisional
Probab=86.60 E-value=3.9 Score=34.08 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYV 119 (125)
-|-+-+.-.||||.|+++-++|++.|+|+.+=.=- +.++-..=.|||
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i 241 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA 241 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence 46666666899999999999999999998764322 123334668887
No 104
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.13 E-value=1.4 Score=38.12 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=42.9
Q ss_pred cCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEE
Q 033217 58 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 117 (125)
Q Consensus 58 vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvF 117 (125)
++-|.|.+.- ....++++- .-.|+||.+..|+..|++.|+||..=++...|+.+.-+|
T Consensus 325 vn~~~~~~~~-~~~~~rlii-~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 325 VNFPEVSLPE-HPGGHRLLH-IHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred eeccccccCC-CCCCceEEE-EeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 4435555443 224556554 789999999999999999999998888888886655444
No 105
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=84.71 E-value=2.4 Score=24.25 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCceEEEEEE
Q 033217 75 IVEITFGD---RLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 75 VVEV~a~D---RpGLL~di~~aL~dLgL~I~~A~I 106 (125)
+|+|.+.+ .+|.+.++.++|.+.|++|..-.-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45555555 899999999999999999976543
No 106
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.86 E-value=3 Score=30.45 Aligned_cols=31 Identities=3% Similarity=0.188 Sum_probs=25.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
|-+-+.-.|+||.|+++-+.|++.|+|+.+=
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~I 72 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHL 72 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEE
Confidence 4455555899999999999999999998753
No 107
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.77 E-value=7.9 Score=23.75 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.2
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 74 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 74 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
++|.+.+. +++|.+.++.++|.+.|+++..-.-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 46667665 789999999999999999997664444
No 108
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.19 E-value=1.9 Score=35.96 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 71 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 71 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
.+.--++|.-.||||.|.++.+.+.+.|.||..-.-
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~ 338 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDH 338 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence 344478899999999999999999999999976543
No 109
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=81.73 E-value=3.1 Score=34.11 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCc
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 112 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 112 (125)
+.+.+.++||.|.+++..+++.|-||.-|.-...++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 5678899999999999999999999999887665553
No 110
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.99 E-value=6.9 Score=33.93 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.2
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYV 119 (125)
.|-+=+...|+||.|+++-+.|++.|+|+.+=.=- +.+.-..=.|||
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi 344 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL 344 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE
Confidence 44455666899999999999999999998764322 345555777887
No 111
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=80.04 E-value=6.7 Score=33.22 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYV 119 (125)
..|-+-++-.|+||.|+++-.+|+..|+|..+=.=-= .+.-..=.|||
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i 241 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI 241 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence 5788888888999999999999999999987543222 22333556666
No 112
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.01 E-value=3.9 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.1
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 74 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 74 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
++|.|.+ .+++|++.++.++|.+.|+++..-.-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666666 48899999999999999999976543
No 113
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=79.96 E-value=3.7 Score=32.77 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.9
Q ss_pred CcEEEEEEe--CCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 72 DATIVEITF--GDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 72 ~~TVVEV~a--~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
..-|||+.. ++.||.|..+++.|++.|++|.-+..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 456788876 66799999999999999999998754
No 114
>PRK08198 threonine dehydratase; Provisional
Probab=77.96 E-value=4.4 Score=34.23 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
...+..-+.|.-.||||.|.++.+.+.+.|.||..-...
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 456777899999999999999999999999999876654
No 115
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=75.30 E-value=4.1 Score=36.05 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=32.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
+||.+.||.|+-.++...|...++++..-.|...|
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 79999999999999999999999999999987654
No 116
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=73.85 E-value=6.6 Score=22.91 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEE
Q 033217 75 IVEITFG---DRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 75 VVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
+|++.+. +++|++.++.+.|.+.++++..-.-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566544 8899999999999999999965543
No 117
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=73.06 E-value=18 Score=22.66 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.9
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 033217 74 TIVEITFG---DRLGALLDTMNALKNLGLNVV 102 (125)
Q Consensus 74 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~ 102 (125)
++|.|.+. ++||++.++.++|.+.|+++.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 45666664 799999999999999999996
No 118
>PRK06545 prephenate dehydrogenase; Validated
Probab=71.39 E-value=12 Score=31.30 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.9
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 71 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 71 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+.+.-+-|.-.||||.|..++..|.+.|+||..-+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 56677788889999999999999999999999988854
No 119
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=70.95 E-value=9.1 Score=23.48 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEe
Q 033217 81 GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 120 (125)
Q Consensus 81 ~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVT 120 (125)
.+++|...++-++|.+.|+++..- +| ++ ..=.|+|.
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~ 46 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLD 46 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEe
Confidence 378999999999999999999865 44 33 23345554
No 120
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.35 E-value=9.8 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=27.9
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 74 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 74 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
++|.+.+. +++|++.++.+.|++.|+++..-..++
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 45666664 789999999999999999997665443
No 121
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=67.83 E-value=27 Score=22.19 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=26.9
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 74 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 74 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
++|+|.+ .+++|++.++.++|++.|+++..-.-+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 4667743 378999999999999999999765443
No 122
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.79 E-value=12 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 74 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 74 TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
+.|.|. -.+++|.+.++-++|.+.|++|..=
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4688999999999999999999864
No 123
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.20 E-value=14 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 80 FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 80 a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
-.+.+|++.++-++|.+.|++|..=
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI 35 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV 35 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 3578999999999999999999864
No 124
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.42 E-value=30 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 74 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 74 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
++|.+.+. +++|++.++.+.|++.|+++..-..++
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666664 789999999999999999998765543
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=60.93 E-value=16 Score=32.48 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 68 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 68 ~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+.++....+=+...||||.+..++..|.+.|+||..-.++-
T Consensus 447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r 487 (526)
T PRK13581 447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGR 487 (526)
T ss_pred EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEecc
Confidence 34455555666679999999999999999999998877754
No 126
>PRK11898 prephenate dehydratase; Provisional
Probab=60.64 E-value=22 Score=29.43 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=30.9
Q ss_pred cEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEE
Q 033217 73 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYV 119 (125)
.|-+-+.-. ||||.|+++-+.|++.|+|+.+=.=-= .++...=.|||
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v 244 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI 244 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE
Confidence 344445544 579999999999999999987532221 12323456776
No 127
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.62 E-value=24 Score=20.83 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=24.6
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 033217 75 IVEITF---GDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 75 VVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
.|.|.+ .+.+|++.++.+.|.+.|+++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 345543 4679999999999999999996654
No 128
>PLN02317 arogenate dehydratase
Probab=58.45 E-value=44 Score=29.49 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=28.1
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
.|-|-+.-.|+||.|+++-.+|+..|+|+.+=.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE 315 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 466767778999999999999999999987643
No 129
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=57.62 E-value=21 Score=32.42 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=30.2
Q ss_pred cCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 66 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 66 DN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
|.......|-|-++-.|++|.|+++-+.|++.|+|+.+
T Consensus 24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh 61 (464)
T TIGR01270 24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH 61 (464)
T ss_pred ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE
Confidence 44444555666667789999999999999999999874
No 130
>PRK08526 threonine dehydratase; Provisional
Probab=57.32 E-value=19 Score=31.17 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
.+.+.-.+.|.-.||||-|.++.+.+.+.|.||..-.-
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 36778889999999999999999999999999876443
No 131
>PRK06635 aspartate kinase; Reviewed
Probab=55.60 E-value=20 Score=30.14 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
++.++++|.+ .|+||.+.++.++|.+.|++|..-
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3566788876 689999999999999999999764
No 132
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=52.73 E-value=35 Score=20.11 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 033217 76 VEITF---GDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 76 VEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
|.|.+ .+.+|++.++.+.|.+.|+++..-.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 44543 4679999999999999999997654
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=52.40 E-value=29 Score=22.51 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 74 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 74 TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
++|.+. -.+.+|++.++.++|.+.|+++..-
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 456663 3577999999999999999999543
No 134
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=50.29 E-value=33 Score=30.92 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=32.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec---CCceeEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD---SSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~---Gerv~DvFYV 119 (125)
.|-|-++-.|+||-|+++-+.|++.|+|+.+ |.|- +....=.|||
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~eY~FFV 63 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPGEYEFFV 63 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCccEEEEE
Confidence 3666667799999999999999999999874 4442 2222335776
No 135
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=47.76 E-value=21 Score=31.75 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe--cCCcee
Q 033217 71 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSSGKH 114 (125)
Q Consensus 71 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT--~Gerv~ 114 (125)
+....+=+.-.||||.+..+++.|.+.++||..-.++- .|+++.
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al 494 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEAL 494 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEE
Confidence 44455556669999999999999999999998777653 344444
No 136
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=47.64 E-value=19 Score=32.93 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
+||...||.||..++-..|-.-++++..-.|.-.|
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 79999999999999999999999999999885433
No 137
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=47.59 E-value=99 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
.+.+...+.|...||||-|.++.+.+...+-||..-+
T Consensus 321 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 357 (409)
T TIGR02079 321 YEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFE 357 (409)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 3577889999999999999999996666766887433
No 138
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=47.14 E-value=22 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=28.5
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
.++---+.++-.||.|.|.++-+++++.++||-.-+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~ 104 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIH 104 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEe
Confidence 333334567889999999999999999999986543
No 139
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=45.83 E-value=40 Score=28.34 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~ 103 (125)
.+.++|.|.+. ++||.+..+.++|.+.|++|..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45667777774 7999999999999999999984
No 140
>PRK08639 threonine dehydratase; Validated
Probab=45.39 E-value=41 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
.+.+...+.|...||||.|.++.+.+...+-||..-
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~ 367 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRF 367 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 367788899999999999999999665555577654
No 141
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=42.91 E-value=24 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
+.-+|.+.-+|.||.|..|+.+|+.-|.||.+=-|.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 456789999999999999999999999999987664
No 142
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.52 E-value=30 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.5
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 80 FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 80 a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
-.+.+|.+.++-++|.+.|++|..-
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4688999999999999999999864
No 143
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=42.00 E-value=26 Score=28.14 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+.|.-.|+||.|..+-+=|+..|-||..--=+-
T Consensus 8 ldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r 40 (170)
T COG2061 8 LDIELKDKPGQLLKVLQPLSKTGANIITIIHSR 40 (170)
T ss_pred EEEEecCCCcchhhhhcchhhcCccEEEEEeec
Confidence 467789999999999999999999997654333
No 144
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=41.25 E-value=58 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 89 DTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 89 di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
.|...|.+.+..|..++++++|.| .=.||+.|.
T Consensus 67 ~i~~~l~~~~~~i~vG~~t~~g~r-~~~fY~~d~ 99 (136)
T PF05117_consen 67 AIIEALEADGNAIYVGRITGNGRR-EFYFYCKDP 99 (136)
T ss_pred HHHHHhhcCCcceEEEEEEECCEE-EEEEEECCh
Confidence 466777888989999999999986 567998876
No 145
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=39.74 E-value=51 Score=34.02 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=35.2
Q ss_pred CEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 033217 61 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 61 PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
|.+.=+.-.+ ..|+|+|...|+|=|.--|...|.++|+.|+.-
T Consensus 6 P~~~~~gw~~-~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i 48 (1528)
T PF05088_consen 6 PDLEEHGWES-DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLI 48 (1528)
T ss_pred CCcccCCCCC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEE
Confidence 4444344444 499999999999999999999999999999863
No 146
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=37.85 E-value=34 Score=27.14 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
++.+-=.|.||.|..++..|+..|+||.+=.+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv 37 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTV 37 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEE
Confidence 56677789999999999999999999987544
No 147
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=36.08 E-value=1.2e+02 Score=19.60 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=32.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
....+-+...| +.+..+.|..+|.++........| --..||+.|.+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~DPd 106 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPG--VGRFAVFADPE 106 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCC--cEEEEEEECCC
Confidence 34445555556 678888999999999876544332 23689999976
No 148
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=35.64 E-value=1.2e+02 Score=19.44 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYVTD~~ 123 (125)
+.++.+.|.+.|+.+..+-....|. .....||++|.+
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPD 116 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCC
Confidence 7888999999999987665544332 345779999986
No 149
>PRK06635 aspartate kinase; Reviewed
Probab=34.18 E-value=98 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.4
Q ss_pred cEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 73 ATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 73 ~TVVEV~-a~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
..+|.|. -.+++|.|.++.++|.+.|++|..-..
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~ 296 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQ 296 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 3444443 467899999999999999999996433
No 150
>PRK08210 aspartate kinase I; Reviewed
Probab=33.71 E-value=79 Score=26.77 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCc-ccHHHHHHHHHHhCCceEEEEEEE
Q 033217 71 PDATIVEITFGDR-LGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 71 ~~~TVVEV~a~DR-pGLL~di~~aL~dLgL~I~~A~Is 107 (125)
.+-+.|+|...+. +|.|.+|..+|.+.|++|..-..+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4567788877665 999999999999999999976433
No 151
>PRK08210 aspartate kinase I; Reviewed
Probab=33.13 E-value=89 Score=26.49 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
++.++|.|.+. ++||.+.++.++|.+.|++|.. ++|
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~ 375 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SAD 375 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--Eec
Confidence 46677778775 7999999999999999999974 444
No 152
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=31.32 E-value=47 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.5
Q ss_pred CcccHHHHHHHHHHhCCceEEEE
Q 033217 82 DRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 82 DRpGLL~di~~aL~dLgL~I~~A 104 (125)
-++|.+.++-++|.+.|++|..=
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I 35 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI 35 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE
Confidence 46999999999999999999754
No 153
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=31.21 E-value=58 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVV 102 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 102 (125)
++.+...|+.+++ ++++.|.++|+.|-
T Consensus 4 lisv~~~dk~~~~-~~a~~l~~~G~~i~ 30 (116)
T cd01423 4 LISIGSYSKPELL-PTAQKLSKLGYKLY 30 (116)
T ss_pred EEecCcccchhHH-HHHHHHHHCCCEEE
Confidence 4566667888776 88899999998884
No 154
>PRK09224 threonine dehydratase; Reviewed
Probab=30.23 E-value=2.4e+02 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.8
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
..+.-.+.|.-.||||-|.++.+.|. +-||..
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nIte 356 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTE 356 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEE
Confidence 44677999999999999999999999 455554
No 155
>PRK12483 threonine dehydratase; Reviewed
Probab=29.43 E-value=2.5e+02 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
+.+...+.|.-.||||-|.++.+.|.+. ||..-+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~ 375 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFN 375 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEE
Confidence 5677889999999999999999999988 665433
No 156
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=28.38 E-value=1.1e+02 Score=26.34 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
++.++|.|.+ .++||++.++.++|++.|++|..-.
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 4567888865 3789999999999999999997654
No 157
>PLN00211 predicted protein; Provisional
Probab=27.97 E-value=18 Score=24.67 Aligned_cols=9 Identities=56% Similarity=1.113 Sum_probs=7.6
Q ss_pred CCCCCCeee
Q 033217 34 RFGNKPLCC 42 (125)
Q Consensus 34 ~~~~~~~~~ 42 (125)
+|.|||||.
T Consensus 9 rfftkpvcw 17 (61)
T PLN00211 9 RFFTKPVCW 17 (61)
T ss_pred HHhccchhc
Confidence 578999996
No 158
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.87 E-value=1.6e+02 Score=18.47 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=21.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceE
Q 033217 75 IVEITFG---DRLGALLDTMNALKNLGLNV 101 (125)
Q Consensus 75 VVEV~a~---DRpGLL~di~~aL~dLgL~I 101 (125)
+|.|.+. +.+|++.++.++|.+.|+.+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4555554 67999999999999987665
No 159
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=27.40 E-value=1.1e+02 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=39.1
Q ss_pred CEEEEcCCCCCCc--EEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 033217 61 PKVIIDLDSDPDA--TIVEITFGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 61 PrV~IDN~as~~~--TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
|.|.++....++- |+|+|...|.|=|.--|+-.|.++|+.++-.
T Consensus 74 ~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 74 PCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred ceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 6788887777666 9999999999999999999999999999865
No 160
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=27.24 E-value=1.8e+02 Score=30.30 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=42.0
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE---EEe-cCC-ceeEEEEEeec
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN---VFL-DSS-GKHNKFAITKA 122 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~---IsT-~Ge-rv~DvFYVTD~ 122 (125)
..+....+.++...++..|.++.-+|.+|||.|...+ |.. +|+ ..+.-|++...
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~ 543 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP 543 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC
Confidence 3456789999999999999999999999999998874 444 233 34677777543
No 161
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=27.23 E-value=1.8e+02 Score=18.70 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 83 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 83 RpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
.+|-||.+-+.|.+.|+--..-... .+.+..-+|.||+.
T Consensus 30 ~~g~lY~~L~~Le~~gli~~~~~~~-~~~~~rk~Y~iT~~ 68 (75)
T PF03551_consen 30 SPGSLYPALKRLEEEGLIESRWEEE-GNGRPRKYYRITEK 68 (75)
T ss_dssp THHHHHHHHHHHHHTTSEEEEEEEE-TTSSEEEEEEESHH
T ss_pred ChhHHHHHHHHHHhCCCEEEeeecc-CCCCCCEEEEECHH
Confidence 4899999999999999977766665 56666778888863
No 162
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=26.60 E-value=53 Score=21.75 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCceEE
Q 033217 87 LLDTMNALKNLGLNVV 102 (125)
Q Consensus 87 L~di~~aL~dLgL~I~ 102 (125)
||||+.+|..+|+--.
T Consensus 46 lYDI~NVLealgli~K 61 (71)
T PF02319_consen 46 LYDIINVLEALGLIEK 61 (71)
T ss_dssp HHHHHHHHHHCTSEEE
T ss_pred hhHHHHHHHHhCceee
Confidence 8999999999998543
No 163
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.53 E-value=1e+02 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVV 102 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 102 (125)
+|.|. |+.|++ ++++.|.++|..|.
T Consensus 4 LISVs--DK~~l~-~lAk~L~~lGf~I~ 28 (187)
T cd01421 4 LISVS--DKTGLV-EFAKELVELGVEIL 28 (187)
T ss_pred EEEEe--CcccHH-HHHHHHHHCCCEEE
Confidence 45555 688855 99999999999995
No 164
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=26.47 E-value=1.2e+02 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCcEEEEEE---eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
++..+|.|. -.+++|.+.++.++|.+.|++|..-
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i 294 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 356677777 4678999999999999999999743
No 165
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.24 E-value=1.7e+02 Score=18.27 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=25.6
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 75 IVEITFG--DRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 75 VVEV~a~--DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+|.|.+. ..+|++.++-++|.+.|++|..-..++
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4444443 468999999999999999997655533
No 166
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=26.02 E-value=75 Score=20.40 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEE
Q 033217 82 DRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 82 DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
+.+|.+.++-+.|.+.|++|-.=..
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI~~ 35 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLINV 35 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEEEe
Confidence 5699999999999999999987733
No 167
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.84 E-value=1.5e+02 Score=19.28 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEec-C-CceeEEEEEeecc
Q 033217 85 GALLDTMNALKNLGLNVVKANVFLD-S-SGKHNKFAITKAY 123 (125)
Q Consensus 85 GLL~di~~aL~dLgL~I~~A~IsT~-G-erv~DvFYVTD~~ 123 (125)
.=+.++.+-|.+.|+.+...-.... | .+....||++|.+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPS 116 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCC
Confidence 4588999999999999886544322 1 1335779999976
No 168
>PRK06291 aspartate kinase; Provisional
Probab=25.70 E-value=1.2e+02 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
++.++|.|.+. +++|.+.++.++|.+.|++|..-.
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIs 356 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45678888764 789999999999999999997643
No 169
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=25.39 E-value=18 Score=26.69 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCce
Q 033217 87 LLDTMNALKNLGLN 100 (125)
Q Consensus 87 L~di~~aL~dLgL~ 100 (125)
-|||+++|++|||+
T Consensus 57 kydIT~~l~~l~l~ 70 (103)
T PF14830_consen 57 KYDITDALKKLGLH 70 (103)
T ss_dssp EEE-HHHHHHCT--
T ss_pred hhhHHHHHHHcCCC
Confidence 47899999999998
No 170
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=25.03 E-value=1.2e+02 Score=25.46 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=45.3
Q ss_pred CEEEEcCCCCCCcEEEEEEeCCc-------ccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEee
Q 033217 61 PKVIIDLDSDPDATIVEITFGDR-------LGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 121 (125)
Q Consensus 61 PrV~IDN~as~~~TVVEV~a~DR-------pGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD 121 (125)
--|+|-..++++..+..+.+.+. ..||..+-++=+++|+.+|...+- ..|+||=.|
T Consensus 102 ~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~-----ssD~FY~~~ 164 (236)
T COG0813 102 RDVVIAQGASTDSNVNRIRFKPHDFAPIADFELLEKAYETAKELGIDTHVGNVF-----SSDLFYNPD 164 (236)
T ss_pred ceEEEeccccCcchhhhcccCcccccccCCHHHHHHHHHHHHHhCCceeeeeee-----eeecccCCC
Confidence 35788888888877776666554 479999999999999999999886 589999655
No 171
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=23.82 E-value=2e+02 Score=18.28 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 86 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 86 LL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
=|.++.+.|++.|..+....-....+ ..=.||++|.+
T Consensus 86 dl~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~y~~Dp~ 122 (128)
T PF00903_consen 86 DLDAAYERLKAQGVEIVEEPDRYYFG-SGYSFYFRDPD 122 (128)
T ss_dssp HHHHHHHHHHHTTGEEEEEEEEHSTT-CEEEEEEEETT
T ss_pred HHHHHHHHHhhcCccEEecCCCCCCC-CEEEEEEECCC
Confidence 35778899999999999876544443 34445899875
No 172
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=23.63 E-value=2.9e+02 Score=20.01 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec--CCce
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGK 113 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Gerv 113 (125)
-+++.+.++||+|..+-++-..-|..+-.-..++- ++++
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~ 45 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNA 45 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccc
Confidence 46789999999999999999999999877666654 5544
No 173
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.65 E-value=1.6e+02 Score=19.62 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHhCCceEEEEEEEecC--CceeEEEEE
Q 033217 89 DTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 119 (125)
Q Consensus 89 di~~aL~dLgL~I~~A~IsT~G--erv~DvFYV 119 (125)
+|.+.|.++|..|...+--..+ ..-.+-|||
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~v 35 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFV 35 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEE
Confidence 6889999999999988877766 445788887
No 174
>PRK07431 aspartate kinase; Provisional
Probab=22.02 E-value=1.6e+02 Score=26.47 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
++.++|.|.+. .+||++.++.++|.+.|++|....
T Consensus 517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 57788999986 899999999999999999996654
No 175
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.92 E-value=2.1e+02 Score=18.05 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+.++.+.|.+.|..+..... ...+ ...||++|.+
T Consensus 78 i~~~~~~l~~~g~~~~~~~~--~~~~-~~~~~~~DP~ 111 (119)
T cd07263 78 IDATYEELKARGVEFSEEPR--EMPY-GTVAVFRDPD 111 (119)
T ss_pred HHHHHHHHHhCCCEEeeccc--cCCC-ceEEEEECCC
Confidence 78889999999998887552 2333 4789999976
No 176
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=21.91 E-value=4.2e+02 Score=23.76 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=27.1
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 70 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 70 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
..+.-.+.|.-.||||-|.++.++|... ||..
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nIte 353 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITE 353 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEE
Confidence 4578899999999999999999999983 5553
No 177
>PRK08841 aspartate kinase; Validated
Probab=21.85 E-value=1.6e+02 Score=25.50 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 033217 71 PDATIVEITFGDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 71 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
++..+|.|.+...||.+..+.++|.+.|++|..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 567899999999999999999999999999954
No 178
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=21.79 E-value=47 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.2
Q ss_pred EeCCcccHHHHHHHHHHhCCceE
Q 033217 79 TFGDRLGALLDTMNALKNLGLNV 101 (125)
Q Consensus 79 ~a~DRpGLL~di~~aL~dLgL~I 101 (125)
.++..|- +.|+..+|.++|+++
T Consensus 54 ~gRt~~~-~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 54 AGRTEPN-LQDVEQALEEMGISV 75 (77)
T ss_pred cCCCCCC-HHHHHHHHHHhCCCC
Confidence 3455555 889999999999976
No 179
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=21.11 E-value=2.3e+02 Score=17.93 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEE
Q 033217 74 TIVEITFG--DRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 74 TVVEV~a~--DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
++|.|.+. .++|++.++.++|.+.|.++..-..
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 45555553 3689999999999999999965433
No 180
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.02 E-value=2.3e+02 Score=17.90 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 85 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 85 GLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
-=+-++.+.|.++|..+...-..... -.-.||+.|.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~DPd 101 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPW--GQRSFYFIDPD 101 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETT--SEEEEEEE-TT
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCC--CeEEEEEECCC
Confidence 34667778899999998775555433 34689999976
No 181
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.78 E-value=2.8e+02 Score=18.71 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=27.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEE
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 117 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvF 117 (125)
++.|....|||.|.+..+.|.. +-+|..=+=--.|+....+|
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vl 44 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVL 44 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEE
Confidence 5788999999999999999853 55665533333333333343
No 182
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=1.3e+02 Score=23.25 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=37.7
Q ss_pred CCcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 56 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 56 ~~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
+++| -.|.++...+ -.++=....-|-+|+|..|.+.|++-|+-|-. |||+
T Consensus 51 ~~vp-~~V~~~~GW~-~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vSty 100 (128)
T COG3603 51 DRVP-DVVQIEKGWS-CLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VSTY 100 (128)
T ss_pred ccCC-cceEecCCeE-EEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEec
Confidence 4677 6888877664 23444556779999999999999999998863 4554
No 183
>PRK09034 aspartate kinase; Reviewed
Probab=20.69 E-value=1.5e+02 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
++-++|.|.. .+++|.+.++.++|.+.|++|..-
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 3457787775 578999999999999999999874
Done!