Query 033217
Match_columns 125
No_of_seqs 115 out of 209
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 98.8 7.6E-09 2.6E-13 77.9 6.4 54 68-121 88-143 (195)
2 1u8s_A Glycine cleavage system 98.6 6.9E-08 2.4E-12 71.5 7.3 55 67-121 87-145 (192)
3 2ko1_A CTR148A, GTP pyrophosph 98.1 1.1E-05 3.7E-10 51.6 7.0 48 72-119 4-51 (88)
4 1zpv_A ACT domain protein; str 98.0 1.5E-05 5.3E-10 51.8 6.9 41 73-113 5-45 (91)
5 1u8s_A Glycine cleavage system 97.9 3.5E-05 1.2E-09 56.9 7.6 49 73-121 6-54 (192)
6 2nyi_A Unknown protein; protei 97.7 0.00015 5E-09 54.4 8.0 48 73-120 5-52 (195)
7 2jhe_A Transcription regulator 97.6 9.5E-05 3.3E-09 51.4 5.1 36 76-111 3-38 (190)
8 3p96_A Phosphoserine phosphata 96.2 0.0079 2.7E-07 48.4 6.1 42 72-113 11-52 (415)
9 3n0v_A Formyltetrahydrofolate 96.0 0.0097 3.3E-07 48.0 5.4 45 73-119 8-52 (286)
10 3lou_A Formyltetrahydrofolate 95.9 0.012 4.1E-07 47.7 5.8 46 72-119 9-54 (292)
11 3obi_A Formyltetrahydrofolate 95.9 0.013 4.3E-07 47.4 5.9 38 72-109 5-42 (288)
12 2f1f_A Acetolactate synthase i 95.9 0.015 5.1E-07 43.8 5.7 37 74-110 4-40 (164)
13 3nrb_A Formyltetrahydrofolate 95.8 0.016 5.6E-07 46.7 5.9 46 72-119 6-51 (287)
14 3o1l_A Formyltetrahydrofolate 95.6 0.016 5.5E-07 47.2 5.4 36 74-109 23-58 (302)
15 1y7p_A Hypothetical protein AF 95.3 0.02 6.7E-07 45.9 4.7 37 74-110 5-41 (223)
16 2pc6_A Probable acetolactate s 95.3 0.029 9.8E-07 42.4 5.3 36 74-109 5-40 (165)
17 2f06_A Conserved hypothetical 95.1 0.068 2.3E-06 37.3 6.7 46 74-119 73-118 (144)
18 2f06_A Conserved hypothetical 94.6 0.12 4E-06 36.1 6.7 35 74-108 7-41 (144)
19 2fgc_A Acetolactate synthase, 93.4 0.29 9.9E-06 38.1 7.4 37 74-110 30-67 (193)
20 1sc6_A PGDH, D-3-phosphoglycer 91.7 0.52 1.8E-05 39.2 7.4 60 57-119 318-377 (404)
21 2re1_A Aspartokinase, alpha an 85.8 0.7 2.4E-05 33.3 3.6 36 71-106 23-59 (167)
22 2re1_A Aspartokinase, alpha an 83.7 1.8 6E-05 31.2 4.9 36 71-108 101-139 (167)
23 2dt9_A Aspartokinase; protein- 81.3 1.1 3.8E-05 32.2 3.0 34 71-104 14-48 (167)
24 2qmx_A Prephenate dehydratase; 81.3 1.6 5.5E-05 35.2 4.3 46 72-119 199-247 (283)
25 2qmw_A PDT, prephenate dehydra 81.3 1.8 6.1E-05 34.7 4.5 48 72-119 185-236 (267)
26 3p96_A Phosphoserine phosphata 79.6 9.6 0.00033 30.3 8.3 49 70-119 98-148 (415)
27 3mtj_A Homoserine dehydrogenas 79.4 1.9 6.4E-05 36.7 4.3 50 72-121 358-409 (444)
28 2dtj_A Aspartokinase; protein- 79.1 1.8 6.2E-05 31.6 3.6 38 71-108 13-51 (178)
29 1ygy_A PGDH, D-3-phosphoglycer 78.3 5.5 0.00019 33.8 6.8 50 69-118 450-501 (529)
30 3mwb_A Prephenate dehydratase; 78.0 2.6 9E-05 34.5 4.6 46 72-119 200-249 (313)
31 3k5p_A D-3-phosphoglycerate de 78.0 6.1 0.00021 33.4 7.0 55 57-113 329-383 (416)
32 2dtj_A Aspartokinase; protein- 77.2 2.4 8E-05 30.9 3.7 38 62-103 88-128 (178)
33 3luy_A Probable chorismate mut 77.0 2.9 0.0001 34.4 4.6 47 73-119 207-255 (329)
34 2dt9_A Aspartokinase; protein- 74.1 3.4 0.00012 29.5 3.9 33 71-103 93-128 (167)
35 1phz_A Protein (phenylalanine 60.1 4.5 0.00015 34.9 2.4 49 69-119 30-81 (429)
36 4go7_X Aspartokinase; transfer 54.4 9.9 0.00034 29.0 3.2 33 72-104 34-67 (200)
37 3s1t_A Aspartokinase; ACT doma 49.7 19 0.00065 26.4 4.1 41 61-105 88-131 (181)
38 3s1t_A Aspartokinase; ACT doma 45.3 20 0.00068 26.3 3.6 33 72-104 15-48 (181)
39 3kol_A Oxidoreductase, glyoxal 44.0 50 0.0017 21.1 5.0 35 86-123 108-142 (156)
40 3rri_A Glyoxalase/bleomycin re 42.3 63 0.0022 20.4 5.8 45 78-123 73-119 (135)
41 3mah_A Aspartokinase; aspartat 42.2 15 0.00051 25.9 2.4 34 71-104 16-52 (157)
42 3zw5_A Glyoxalase domain-conta 37.2 45 0.0015 21.9 4.1 38 86-123 100-138 (147)
43 3ey7_A Biphenyl-2,3-DIOL 1,2-d 33.4 61 0.0021 20.0 4.1 37 87-123 84-121 (133)
44 3ab4_A Aspartokinase; aspartat 33.4 1.1E+02 0.0038 24.9 6.6 37 71-107 262-299 (421)
45 3ab4_A Aspartokinase; aspartat 31.4 48 0.0017 27.1 4.1 32 71-102 342-376 (421)
46 3r6a_A Uncharacterized protein 31.2 1.1E+02 0.0037 20.4 5.3 34 87-123 76-109 (144)
47 3hdp_A Glyoxalase-I; glutathio 31.2 98 0.0033 19.3 5.1 37 87-123 88-124 (133)
48 3c1m_A Probable aspartokinase; 30.6 36 0.0012 28.5 3.3 36 71-106 316-354 (473)
49 3g12_A Putative lactoylglutath 28.6 1.2E+02 0.0041 19.5 7.2 45 72-123 66-111 (128)
50 3ghj_A Putative integron gene 25.2 88 0.003 20.4 3.9 36 86-123 97-132 (141)
51 3huh_A Virulence protein STM31 24.6 92 0.0031 20.2 3.9 37 87-123 97-134 (152)
52 4g6x_A Glyoxalase/bleomycin re 24.3 1.5E+02 0.0052 19.5 5.0 34 87-123 109-142 (155)
53 4esb_A Transcriptional regulat 24.3 1.6E+02 0.0053 19.7 5.1 39 83-122 41-79 (115)
54 3c1m_A Probable aspartokinase; 24.2 74 0.0025 26.6 4.1 31 71-101 402-435 (473)
55 3tvi_A Aspartokinase; structur 23.7 49 0.0017 27.9 2.9 33 71-103 296-331 (446)
56 1lfd_A Ralgds; RAL, effector i 23.2 96 0.0033 21.4 3.8 37 62-100 7-43 (87)
57 2cdq_A Aspartokinase; aspartat 20.8 81 0.0028 27.0 3.7 34 71-104 339-375 (510)
58 1wj5_A Hypothetical protein (r 20.8 34 0.0012 25.1 1.1 34 84-123 77-110 (120)
59 2jys_A Protease/reverse transc 20.2 61 0.0021 23.2 2.3 27 94-120 36-63 (107)
60 1zvp_A Hypothetical protein VC 20.1 1.2E+02 0.0042 21.6 4.0 39 69-109 67-108 (133)
61 2i7r_A Conserved domain protei 20.0 1.6E+02 0.0055 18.0 4.3 43 75-123 66-108 (118)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.80 E-value=7.6e-09 Score=77.92 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC--CceeEEEEEee
Q 033217 68 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAITK 121 (125)
Q Consensus 68 ~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G--erv~DvFYVTD 121 (125)
+.+...++|+|.+.||||++++|+++|++.|+||..+++.|++ ++..|.||++.
T Consensus 88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~ 143 (195)
T 2nyi_A 88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS 143 (195)
T ss_dssp CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE
T ss_pred CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE
Confidence 4556789999999999999999999999999999999999999 88999999974
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.64 E-value=6.9e-08 Score=71.52 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=47.1
Q ss_pred CCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC----ceeEEEEEee
Q 033217 67 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS----GKHNKFAITK 121 (125)
Q Consensus 67 N~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge----rv~DvFYVTD 121 (125)
++.+...++|+|.+.||||+|++|++.|++.|+||..++..|+++ +..|.||++.
T Consensus 87 ~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~ 145 (192)
T 1u8s_A 87 HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI 145 (192)
T ss_dssp CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE
T ss_pred CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE
Confidence 455667899999999999999999999999999999999999995 6899999964
No 3
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.11 E-value=1.1e-05 Score=51.64 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=40.8
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
..+.++|...||||+|.+|+++|++.|++|....+.+.++.+...|-+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 456789999999999999999999999999999999876655555543
No 4
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.04 E-value=1.5e-05 Score=51.79 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.5
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
...+.|.+.||||+|.+|+++|++.|.||......+..+.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~ 45 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYF 45 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEE
Confidence 46799999999999999999999999999999988876433
No 5
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.92 E-value=3.5e-05 Score=56.87 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=43.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEee
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 121 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD 121 (125)
..+|-|.+.||||+++.|+++|++.|+||..+.+.+.++++.=.|.|..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 4689999999999999999999999999999999998887776777753
No 6
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.70 E-value=0.00015 Score=54.38 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=42.5
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEe
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 120 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVT 120 (125)
..+|-|.+.|||||.+.|+.+|.++|+||..|++.+.++++.=.|+|.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 468999999999999999999999999999999998777764477774
No 7
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.58 E-value=9.5e-05 Score=51.42 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCC
Q 033217 76 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 111 (125)
Q Consensus 76 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 111 (125)
|+|.+.||+|+|.+|+++|.+.+.+|....+.+.|.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~ 38 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence 789999999999999999999999999999988753
No 8
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.24 E-value=0.0079 Score=48.41 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=37.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
..-+|.|.+.||||+.+.|++.|++.|.||....-...++++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f 52 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL 52 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe
Confidence 456899999999999999999999999999999888777654
No 9
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.98 E-value=0.0097 Score=48.01 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=37.2
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 73 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
..++.|.+.||||+.+.|++.|++.|+||....-.++. ..+.|+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~--~~g~Ffm 52 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDR--QSGRFFI 52 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TTTEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccC--CCCeeEE
Confidence 36899999999999999999999999999988777543 2345554
No 10
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.94 E-value=0.012 Score=47.69 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=37.5
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
...++.|.+.||||+.+.|++.|++.|+||....-.++.+ .+.|+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~--~g~Ffm 54 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDL--SARFFV 54 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETT--TTEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCC--CCceEE
Confidence 3468999999999999999999999999999888775432 334544
No 11
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=95.92 E-value=0.013 Score=47.36 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=33.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
..-++.|.+.||||+.+.|++.|++.|+||....-.++
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 42 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND 42 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec
Confidence 34689999999999999999999999999998877643
No 12
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.88 E-value=0.015 Score=43.80 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
-.++|...||||+|.+|+++|++.|.||.+..+....
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~ 40 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTD 40 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecC
Confidence 3588999999999999999999999999998887533
No 13
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.76 E-value=0.016 Score=46.70 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=37.2
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
..-++.|.+.||||+.+.|++.|++.|+||....-.++. ..+.|+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~--~~g~Ffm 51 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE--DSSKFFM 51 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TTTEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC--CCCeEEE
Confidence 346899999999999999999999999999988776433 2345554
No 14
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=95.62 E-value=0.016 Score=47.24 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
-++.|.+.||||+.+.|++.|++.|+||....-.++
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 589999999999999999999999999999887765
No 15
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=95.28 E-value=0.02 Score=45.93 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecC
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 110 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 110 (125)
.-++|...||+|+|.+|+++|++.+.||...+..+..
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3478999999999999999999999999999999864
No 16
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.25 E-value=0.029 Score=42.40 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=32.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
-.++|...||||+|.+|++.|++.|.||.+..+...
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t 40 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPT 40 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEEC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEec
Confidence 357899999999999999999999999999888643
No 17
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=95.14 E-value=0.068 Score=37.28 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=35.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
.++.|.-.|+||.|.++.++|++.|+||.....+..+.+..=+|-+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 6788888999999999999999999999776665223344334433
No 18
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.62 E-value=0.12 Score=36.05 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
-.+.|.-.||||.|.++.+.|++.|+||..-.+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 35677889999999999999999999999877754
No 19
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=93.39 E-value=0.29 Score=38.12 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=32.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-ecC
Q 033217 74 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDS 110 (125)
Q Consensus 74 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~G 110 (125)
-.+.|...||||.|.+|++.|++.|.||.+=.+. |..
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted 67 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESET 67 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCC
Confidence 5688999999999999999999999999987775 443
No 20
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=91.72 E-value=0.52 Score=39.25 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=44.3
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEE
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 119 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYV 119 (125)
.++.|.|.+-.. +..+ +-+.-.|+||.+..|++.|.+.|+||..-++.+.|+.+.=++-|
T Consensus 318 ~vn~p~~~~~~~--~~~r-l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 318 AVNFPEVSLPLH--GGRR-LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp BSSSCCCCCCCC--SSEE-EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred eecccccccCcC--Ccce-EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 344444443322 3344 44778899999999999999999999999999988876655544
No 21
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=85.77 E-value=0.7 Score=33.29 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCcEEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 71 PDATIVEITF-GDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 71 ~~~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
.+.+.|.|.. .|+||.+.++.++|.+.|++|..-..
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 3567888885 89999999999999999999976543
No 22
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=83.72 E-value=1.8 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCcEEEEEEeCC---cccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 71 PDATIVEITFGD---RLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 71 ~~~TVVEV~a~D---RpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
+..++|.|.+.+ +||.+..+.++|.+.|++|.. |+|
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--ist 139 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--IST 139 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEc
Confidence 468999999988 999999999999999999987 554
No 23
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=81.32 E-value=1.1 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCcEEEEEEe-CCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEITF-GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
.+.+.|.|.+ .|+||.+.++.++|.+.|++|..-
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I 48 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMI 48 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4567777776 799999999999999999999874
No 24
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=81.31 E-value=1.6 Score=35.15 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=35.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe---cCCceeEEEEE
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Gerv~DvFYV 119 (125)
.-|-|-+.-.|+||.|+++-+.|++.|+|+.+ |.+ .+.-..=.|||
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffv 247 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTK--IESRPSRKKAFEYLFYA 247 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTEEEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeE--EEeeEcCCCCcceEEEE
Confidence 34556566679999999999999999999875 443 34445778888
No 25
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=81.28 E-value=1.8 Score=34.68 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=34.8
Q ss_pred CcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEe-cCCceeEEEEE
Q 033217 72 DATIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Gerv~DvFYV 119 (125)
+.|-|-+.- .|+||.|+++-+.|++.|+|+.+=.=-- .+.-..=.|||
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi 236 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV 236 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEE
Confidence 455555666 8999999999999999999987532211 23334678887
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=79.58 E-value=9.6 Score=30.31 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=38.6
Q ss_pred CCCcEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEecCCceeEE-EEE
Q 033217 70 DPDATIVEITFGD-RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNK-FAI 119 (125)
Q Consensus 70 s~~~TVVEV~a~D-RpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~Dv-FYV 119 (125)
....-++++.++| ++|++.++++.|.+.|+||.....-+.... .-. |+|
T Consensus 98 ~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~-~~~~~~v 148 (415)
T 3p96_A 98 EPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPV-IGLELRV 148 (415)
T ss_dssp CCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSS-EEEEEEE
T ss_pred CCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCc-eEEEEEe
Confidence 3456789999999 999999999999999999988877774333 233 555
No 27
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=79.43 E-value=1.9 Score=36.70 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec--CCceeEEEEEee
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAITK 121 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Gerv~DvFYVTD 121 (125)
..-.+.+...||||.|.+|+++|.+.|++|.+-.=.-. ++.......||.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th 409 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH 409 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence 44478888999999999999999999999987532211 122356666774
No 28
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=79.12 E-value=1.8 Score=31.56 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCcEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 033217 71 PDATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANVFL 108 (125)
Q Consensus 71 ~~~TVVEV~-a~DRpGLL~di~~aL~dLgL~I~~A~IsT 108 (125)
.+.+.|.|. ..|+||.+.++.+.|.+.|++|..-..++
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456777774 58999999999999999999887655543
No 29
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=78.29 E-value=5.5 Score=33.85 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEec--CCceeEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFA 118 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Gerv~DvFY 118 (125)
..+.+..+-+.-.||||.+..++..|.+.|+||..-.|.-. |+.+.=++.
T Consensus 450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~ 501 (529)
T 1ygy_A 450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR 501 (529)
T ss_dssp EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE
T ss_pred ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE
Confidence 55667788899999999999999999999999999999764 444443333
No 30
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=78.00 E-value=2.6 Score=34.48 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=34.3
Q ss_pred CcEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEe---cCCceeEEEEE
Q 033217 72 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 119 (125)
Q Consensus 72 ~~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT---~Gerv~DvFYV 119 (125)
..|-|-+.-. |+||.|+++-+.|++.|+|+.+ |.+ .+.-..=.|||
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffi 249 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSR--IESRPTGQYLGHYFFSI 249 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTSEEEEE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEE--EEEeecCCCCccEEEEE
Confidence 4566667764 9999999999999999999864 443 23333567887
No 31
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=77.97 E-value=6.1 Score=33.38 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=44.5
Q ss_pred CcCCCEEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCce
Q 033217 57 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 113 (125)
Q Consensus 57 ~vp~PrV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv 113 (125)
.|+.|.|.... .+...-|-+.-.|+||.|.+|.++|.+.|+||..=.-.|.|+.+
T Consensus 329 ~Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~ 383 (416)
T 3k5p_A 329 AVNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG 383 (416)
T ss_dssp BSSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE
T ss_pred eeeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE
Confidence 44445665432 33456788889999999999999999999999999999999975
No 32
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=77.19 E-value=2.4 Score=30.93 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 033217 62 KVIIDLDSDPDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 62 rV~IDN~as~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~ 103 (125)
.|.++ ++.++|.|.+. ++||.+..+.++|.+.|++|..
T Consensus 88 ~v~~~----~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ 128 (178)
T 2dtj_A 88 NVLYD----DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 128 (178)
T ss_dssp EEEEE----SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred eEEEe----CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence 46554 46788888887 8999999999999999999987
No 33
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=76.97 E-value=2.9 Score=34.42 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=31.8
Q ss_pred cEEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEE-ecCCceeEEEEE
Q 033217 73 ATIVEITF-GDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 119 (125)
Q Consensus 73 ~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Gerv~DvFYV 119 (125)
.|++-... .|+||.|+++-..|++.|+|+.+=.=- +.+.-..=.|||
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi 255 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV 255 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE
Confidence 34443333 389999999999999999998653221 134444667887
No 34
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=74.14 E-value=3.4 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCcEEEEEEeCC---cccHHHHHHHHHHhCCceEEE
Q 033217 71 PDATIVEITFGD---RLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 71 ~~~TVVEV~a~D---RpGLL~di~~aL~dLgL~I~~ 103 (125)
++.++|.|.+.+ +||.+..+.++|.+.|++|..
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~ 128 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM 128 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence 577889999987 999999999999999999943
No 35
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=60.11 E-value=4.5 Score=34.89 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe---cCCceeEEEEE
Q 033217 69 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 119 (125)
Q Consensus 69 as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Gerv~DvFYV 119 (125)
+...-|-|-+.-.|+||.|+++.+.|++.|+|+.+ |.| .+....=.|||
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTk--IESRPsk~~~~eY~FfV 81 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTH--IESRPSRLNKDEYEFFT 81 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTS--EEEEECSSCTTEEEEEE
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEE--EEeeecCCCCccEEEEE
Confidence 33455666677789999999999999999999764 332 23334667777
No 36
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=54.36 E-value=9.9 Score=28.97 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=27.0
Q ss_pred CcEEEEEEe-CCcccHHHHHHHHHHhCCceEEEE
Q 033217 72 DATIVEITF-GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 72 ~~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
+.+.|.|.. .|+||.+.++-++|++.|++|..=
T Consensus 34 ~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI 67 (200)
T 4go7_X 34 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMV 67 (200)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHhCcceEEE
Confidence 445565543 799999999999999999999763
No 37
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=49.72 E-value=19 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=33.8
Q ss_pred CEEEEcCCCCCCcEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 033217 61 PKVIIDLDSDPDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 105 (125)
Q Consensus 61 PrV~IDN~as~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 105 (125)
-.|.++ +...+|.|.+. ++||.+..+.++|.+.|++|..-.
T Consensus 88 ~~v~~~----~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 88 SQLLYD----DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp SEEEEE----SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEe----CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 356665 36788888776 899999999999999999998755
No 38
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.28 E-value=20 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.3
Q ss_pred CcEEEEEE-eCCcccHHHHHHHHHHhCCceEEEE
Q 033217 72 DATIVEIT-FGDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 72 ~~TVVEV~-a~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
+.+.|.|. -.|+||.+.++.++|.+.|++|..-
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I 48 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMV 48 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCE
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 44555553 4699999999999999999999653
No 39
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=43.97 E-value=50 Score=21.06 Aligned_cols=35 Identities=3% Similarity=-0.015 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 86 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 86 LL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
=+.++.+.|.+.|..+...-....+. ..||++|.+
T Consensus 108 d~~~~~~~l~~~G~~~~~~~~~~~~g---~~~~~~DPd 142 (156)
T 3kol_A 108 LFDRAVTVIGENKIAIAHGPVTRPTG---RGVYFYDPD 142 (156)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEC-CC---EEEEEECTT
T ss_pred HHHHHHHHHHHCCCccccCceecCCc---cEEEEECCC
Confidence 37788889999999997765554333 388999976
No 40
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=42.28 E-value=63 Score=20.38 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred EEeCCcccHHHHHHHHHHhCCceEEEEEEEe-cC-CceeEEEEEeecc
Q 033217 78 ITFGDRLGALLDTMNALKNLGLNVVKANVFL-DS-SGKHNKFAITKAY 123 (125)
Q Consensus 78 V~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~G-erv~DvFYVTD~~ 123 (125)
+...++ .=+.++.+.|.+.|+.+...-... .| .+..-.||++|.+
T Consensus 73 ~~~~~~-~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPd 119 (135)
T 3rri_A 73 ITFRDK-KHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPS 119 (135)
T ss_dssp EECSSH-HHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTT
T ss_pred EEEcCh-HhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCC
Confidence 334443 568889999999999997776654 34 3345689999976
No 41
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=42.23 E-value=15 Score=25.88 Aligned_cols=34 Identities=6% Similarity=-0.076 Sum_probs=28.0
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
++.+.|.|.+ .|+||.+.++-++|.+.|++|..-
T Consensus 16 ~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I 52 (157)
T 3mah_A 16 DGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMV 52 (157)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCE
T ss_pred CCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEE
Confidence 3567888875 478999999999999999998643
No 42
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=37.17 E-value=45 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEEeecc
Q 033217 86 ALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 123 (125)
Q Consensus 86 LL~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYVTD~~ 123 (125)
=|.++.+.|.+.|+.+...-+...|+ ...-.||++|.+
T Consensus 100 dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPd 138 (147)
T 3zw5_A 100 PLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPD 138 (147)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred CHHHHHHHHHHcCCceeeCcccccCCCCceEEEEEECCC
Confidence 47788889999999998766654444 345689999986
No 43
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=33.44 E-value=61 Score=20.00 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCC-ceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Ge-rv~DvFYVTD~~ 123 (125)
+.++.+.|.+.|+.+...-....+. ...-.||++|.+
T Consensus 84 ~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPd 121 (133)
T 3ey7_A 84 LSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPD 121 (133)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred HHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCC
Confidence 7888899999999998765544433 445789999976
No 44
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=33.41 E-value=1.1e+02 Score=24.92 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCcEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEE
Q 033217 71 PDATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANVF 107 (125)
Q Consensus 71 ~~~TVVEV~-a~DRpGLL~di~~aL~dLgL~I~~A~Is 107 (125)
++.+.|.|. -.|++|.+.++.+.|.+.|++|..-..+
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~ 299 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 299 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEcc
Confidence 356778887 5899999999999999999999865443
No 45
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=31.40 E-value=48 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNVV 102 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~ 102 (125)
++..+|.|.+. ++||.+..+.++|.+.|++|.
T Consensus 342 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~ 376 (421)
T 3ab4_A 342 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE 376 (421)
T ss_dssp CCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence 35667888885 799999999999999999998
No 46
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=31.24 E-value=1.1e+02 Score=20.40 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+.++.+.|.+.|..+...-....+. -.||++|.+
T Consensus 76 ~d~~~~~l~~~G~~v~~~p~~~~~G---~~~~~~DPd 109 (144)
T 3r6a_A 76 LDKFKTFLEENGAEIIRGPSKVPTG---RNMTVRHSD 109 (144)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTE---EEEEEECTT
T ss_pred HHHHHHHHHHcCCEEecCCccCCCc---eEEEEECCC
Confidence 6788899999999988775554433 468999976
No 47
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=31.15 E-value=98 Score=19.31 Aligned_cols=37 Identities=5% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+.+..+.|++.|+.+...-....+.+-.-.+|+.|.+
T Consensus 88 i~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPd 124 (133)
T 3hdp_A 88 IQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTD 124 (133)
T ss_dssp HHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETT
T ss_pred HHHHHHHHHHcCCccccCCeecccCCCceEEEEECCC
Confidence 7788899999999987753333333334678999876
No 48
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=30.60 E-value=36 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=30.9
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKANV 106 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~I 106 (125)
++.+.|.|.+ .+++|.+.++.++|.+.|++|..-..
T Consensus 316 ~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ 354 (473)
T 3c1m_A 316 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQ 354 (473)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEe
Confidence 4678888886 68899999999999999999976554
No 49
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=28.62 E-value=1.2e+02 Score=19.51 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=30.6
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCce-EEEEEEEecCCceeEEEEEeecc
Q 033217 72 DATIVEITFGDRLGALLDTMNALKNLGLN-VVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 72 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~-I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
....+-+...| +.++.+.|.+.|.. +...-.... +-.- ||++|.+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~--~G~~-~~~~DPd 111 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMP--DGKK-AIVLDPD 111 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC---CEE-EEEECTT
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCC--CccE-EEEECCC
Confidence 34556666667 88999999999999 765443332 2222 9999976
No 50
>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}
Probab=25.15 E-value=88 Score=20.41 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 86 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 86 LL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
=|.++.+.|.+.|+.+........| ....||++|.+
T Consensus 97 dld~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~DPd 132 (141)
T 3ghj_A 97 EIEPLKKALESKGVSVHGPVNQEWM--QAVSLYFADPN 132 (141)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEGGG--TEEEEEEECTT
T ss_pred HHHHHHHHHHHCCCeEeCCcccCCC--CceEEEEECCC
Confidence 3788889999999999843332222 24689999976
No 51
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=24.57 E-value=92 Score=20.16 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCceEEEEEEEecC-CceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~G-erv~DvFYVTD~~ 123 (125)
|.++.+.|.+.|..+...-....+ ....-.||++|.+
T Consensus 97 l~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPd 134 (152)
T 3huh_A 97 INDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPD 134 (152)
T ss_dssp HHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTT
T ss_pred HHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCC
Confidence 788888999999998776554433 3345788999976
No 52
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=24.29 E-value=1.5e+02 Score=19.48 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 87 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 87 L~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
+.+..+.|++.|..+...-....+.+ .+|++|.+
T Consensus 109 vda~~~~l~~~Gv~~~~~p~~~~~g~---~~~f~DPd 142 (155)
T 4g6x_A 109 IAAEYERLSALGVRFTQEPTDMGPVV---TAILDDTC 142 (155)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSSCE---EEEEECSS
T ss_pred hhhhhhHHhcCCcEEeeCCEEcCCeE---EEEEECCC
Confidence 66788899999999988766655443 57889876
No 53
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=24.27 E-value=1.6e+02 Score=19.75 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeec
Q 033217 83 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 122 (125)
Q Consensus 83 RpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~ 122 (125)
.+|-||.+-+-|.+.|+-... ....++.+..-.|.+|+.
T Consensus 41 s~gtlY~~L~rLe~~GlI~~~-~~~~~~g~~rk~Y~LT~~ 79 (115)
T 4esb_A 41 SEGSIYPLLLRMQKEKLIEGT-LKASSLGPKRKYYHITDK 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE-EEECTTSCEEEEEEECHH
T ss_pred CcChHHHHHHHHHHCCCeEEE-eeecCCCCCcEEEEECHH
Confidence 479999999999999995444 333344455556668863
No 54
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=24.22 E-value=74 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCceE
Q 033217 71 PDATIVEITFG---DRLGALLDTMNALKNLGLNV 101 (125)
Q Consensus 71 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I 101 (125)
++..+|.|.+. ++||.+..+.++|.+.|+||
T Consensus 402 ~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI 435 (473)
T 3c1m_A 402 KDVCVISVVGAGMRGAKGIAGKIFTAVSESGANI 435 (473)
T ss_dssp EEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCC
T ss_pred CCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCE
Confidence 35667888885 58999999999999999999
No 55
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=23.71 E-value=49 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.1
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVK 103 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~ 103 (125)
.+.+.|.|.. .+++|.+.++-++|.+.|++|..
T Consensus 296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~ 331 (446)
T 3tvi_A 296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH 331 (446)
T ss_dssp EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE
Confidence 4677899987 58999999999999999999975
No 56
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=23.17 E-value=96 Score=21.40 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCce
Q 033217 62 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLN 100 (125)
Q Consensus 62 rV~IDN~as~~~TVVEV~a~DRpGLL~di~~aL~dLgL~ 100 (125)
||.+|++....|-=|-|+..||---+ |-++|.+++|.
T Consensus 7 RVs~d~~~gn~YKSI~ltsqDrtp~v--I~~al~Khnl~ 43 (87)
T 1lfd_A 7 RVSLDVDNGNMYKSILVTSQDKAPTV--IRKAMDKHNLD 43 (87)
T ss_dssp EEEESSCSSEEEEEEEEETTCBHHHH--HHHHHHHTTCC
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHH--HHHHHHHcCCC
Confidence 78888888888888889999996543 66788888875
No 57
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=20.82 E-value=81 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 033217 71 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 104 (125)
Q Consensus 71 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 104 (125)
.+.+.|.|.. .+++|.+.++-++|.+.|++|..-
T Consensus 339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I 375 (510)
T 2cdq_A 339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV 375 (510)
T ss_dssp EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE
Confidence 3678899987 679999999999999999999865
No 58
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=20.75 E-value=34 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 84 LGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 84 pGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.-++-+..+.|.+.|+.-++ .+..-|+|||||.|
T Consensus 77 ~sifKeAi~~Lqe~G~VfqK------~~~~d~lYyVT~qD 110 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQR------DSGSDKLYYVTTKD 110 (120)
T ss_dssp HHHHHHHHHHHHHHTSEECS------SCSSSCCBEECSSS
T ss_pred HHHHHHHHHHHHHCCEEEec------cCCccceEEeeccc
Confidence 34666888999999986654 44445799999987
No 59
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=20.16 E-value=61 Score=23.24 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=21.5
Q ss_pred HHhCCceEEEEEEEe-cCCceeEEEEEe
Q 033217 94 LKNLGLNVVKANVFL-DSSGKHNKFAIT 120 (125)
Q Consensus 94 L~dLgL~I~~A~IsT-~Gerv~DvFYVT 120 (125)
|-.-.--|...-|.| .|++-.|++|++
T Consensus 36 fL~~E~PI~~~~I~TIHG~k~q~vYYl~ 63 (107)
T 2jys_A 36 FLEDERPIQTMLIKTIHGEKQQDVYYLT 63 (107)
T ss_dssp GTTTCCCSEEEEEECSSCEEEEEEEEEE
T ss_pred HhcccccccceEEEEecCceeceEEEEE
Confidence 444455678888988 799999999996
No 60
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=20.15 E-value=1.2e+02 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.1
Q ss_pred CCCCcEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEec
Q 033217 69 SDPDATIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFLD 109 (125)
Q Consensus 69 as~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 109 (125)
....+..|.|.. .|-.|++..++..|++-|++|.. |+|+
T Consensus 67 ~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~--iSty 108 (133)
T 1zvp_A 67 SSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANV--IAGY 108 (133)
T ss_dssp CCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEE--EECS
T ss_pred cCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEE--EEec
Confidence 334556666644 79999999999999999998874 5554
No 61
>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2
Probab=20.03 E-value=1.6e+02 Score=17.96 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEecCCceeEEEEEeecc
Q 033217 75 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 123 (125)
Q Consensus 75 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Gerv~DvFYVTD~~ 123 (125)
.+-+...| +.++.+.|.+.|..+...-.... +-.-.||++|.+
T Consensus 66 ~~~~~v~d----~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~DPd 108 (118)
T 2i7r_A 66 IIHIEVED----VDQNYKRLNELGIKVLHGPTVTD--WGTESLLVQGPA 108 (118)
T ss_dssp EEEEECSC----HHHHHHHHHHHTCCEEEEEEECT--TSCEEEEEECGG
T ss_pred EEEEEECC----HHHHHHHHHHCCCceecCCcccc--CccEEEEEECCC
Confidence 34554445 77888899999999866544332 334578899876
Done!