Query 033218
Match_columns 125
No_of_seqs 104 out of 1796
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 8.6E-24 1.9E-28 143.1 14.6 118 1-123 156-275 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.1E-23 1.1E-27 140.4 16.7 80 44-123 270-349 (352)
3 TIGR01645 half-pint poly-U bin 99.9 4E-23 8.7E-28 147.1 14.9 123 1-123 156-284 (612)
4 KOG0145 RNA-binding protein EL 99.9 7.3E-22 1.6E-26 126.0 8.7 118 1-123 90-209 (360)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.9E-21 1.9E-25 129.4 14.8 118 1-123 52-171 (352)
6 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-20 2.5E-25 132.8 15.6 120 1-121 138-264 (457)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-20 2.4E-25 134.4 15.6 120 1-121 230-373 (509)
8 KOG0148 Apoptosis-promoting RN 99.9 7.4E-21 1.6E-25 121.7 13.0 116 1-122 111-237 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1.3E-20 2.8E-25 135.4 14.2 122 1-123 226-364 (562)
10 PLN03134 glycine-rich RNA-bind 99.9 7.7E-20 1.7E-24 110.3 13.2 85 39-123 30-114 (144)
11 TIGR01648 hnRNP-R-Q heterogene 99.8 9.2E-20 2E-24 129.7 14.5 115 1-123 189-307 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.1E-19 2.3E-24 128.6 14.4 121 1-123 320-480 (481)
13 TIGR01628 PABP-1234 polyadenyl 99.8 2.2E-19 4.8E-24 129.1 14.7 122 1-123 136-261 (562)
14 KOG0144 RNA-binding protein CU 99.8 3E-20 6.4E-25 125.4 8.2 119 1-124 83-207 (510)
15 TIGR01648 hnRNP-R-Q heterogene 99.8 2.9E-19 6.2E-24 127.2 12.8 117 4-121 19-136 (578)
16 KOG0117 Heterogeneous nuclear 99.8 5.2E-19 1.1E-23 119.8 12.4 120 3-122 43-163 (506)
17 KOG0131 Splicing factor 3b, su 99.8 9.5E-20 2.1E-24 110.6 7.7 119 1-123 58-177 (203)
18 KOG0117 Heterogeneous nuclear 99.8 3.4E-19 7.3E-24 120.7 10.6 72 44-123 260-331 (506)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2.9E-18 6.4E-23 121.3 15.2 119 1-123 45-174 (481)
20 PF00076 RRM_1: RNA recognitio 99.8 6.5E-18 1.4E-22 90.1 10.1 70 46-116 1-70 (70)
21 KOG0123 Polyadenylate-binding 99.8 1.2E-17 2.7E-22 114.0 12.6 109 1-122 44-152 (369)
22 KOG0122 Translation initiation 99.8 8.3E-18 1.8E-22 106.4 9.9 82 42-123 188-269 (270)
23 TIGR01659 sex-lethal sex-letha 99.8 1.2E-17 2.6E-22 113.4 11.0 85 39-123 103-187 (346)
24 KOG0127 Nucleolar protein fibr 99.8 1.7E-17 3.6E-22 115.1 11.6 122 1-123 54-196 (678)
25 KOG0145 RNA-binding protein EL 99.7 3.4E-16 7.4E-21 100.3 12.2 123 1-123 176-358 (360)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.8E-16 1.3E-20 110.3 14.5 121 1-121 344-500 (509)
27 PF14259 RRM_6: RNA recognitio 99.7 2.8E-16 6E-21 84.0 9.9 70 46-116 1-70 (70)
28 KOG0125 Ataxin 2-binding prote 99.7 1.1E-16 2.3E-21 105.1 9.3 81 41-123 94-174 (376)
29 KOG0121 Nuclear cap-binding pr 99.7 8.2E-17 1.8E-21 92.8 7.4 80 41-120 34-113 (153)
30 KOG0110 RNA-binding protein (R 99.7 1E-16 2.2E-21 113.8 8.3 122 1-122 567-692 (725)
31 KOG0127 Nucleolar protein fibr 99.7 1E-15 2.2E-20 106.4 12.5 80 44-123 293-378 (678)
32 KOG0109 RNA-binding protein LA 99.7 1.5E-16 3.2E-21 103.1 7.3 107 2-123 44-150 (346)
33 TIGR01645 half-pint poly-U bin 99.7 4.5E-16 9.7E-21 111.5 10.3 80 42-121 106-185 (612)
34 KOG0124 Polypyrimidine tract-b 99.7 2.7E-16 5.8E-21 105.0 7.9 121 1-121 162-288 (544)
35 KOG0114 Predicted RNA-binding 99.7 2.7E-15 5.9E-20 83.6 9.7 83 37-122 12-94 (124)
36 KOG0148 Apoptosis-promoting RN 99.7 9E-16 1.9E-20 98.6 8.6 102 23-124 42-143 (321)
37 PLN03120 nucleic acid binding 99.7 2.4E-15 5.1E-20 97.3 10.4 75 43-121 4-78 (260)
38 KOG0149 Predicted RNA-binding 99.7 7E-16 1.5E-20 97.3 7.6 78 42-120 11-88 (247)
39 KOG0107 Alternative splicing f 99.6 1.1E-15 2.3E-20 92.6 7.9 77 42-123 9-85 (195)
40 KOG0113 U1 small nuclear ribon 99.6 5.8E-15 1.3E-19 96.0 11.0 83 40-122 98-180 (335)
41 KOG4207 Predicted splicing fac 99.6 1.2E-15 2.5E-20 94.8 7.1 84 38-121 8-91 (256)
42 smart00362 RRM_2 RNA recogniti 99.6 8.6E-15 1.9E-19 77.8 9.5 72 45-118 1-72 (72)
43 KOG0130 RNA-binding protein RB 99.6 3.1E-15 6.8E-20 87.1 6.9 80 41-120 70-149 (170)
44 TIGR01622 SF-CC1 splicing fact 99.6 2.2E-14 4.8E-19 101.1 12.2 80 42-122 88-167 (457)
45 KOG0111 Cyclophilin-type pepti 99.6 1.1E-15 2.4E-20 95.8 4.5 83 42-124 9-91 (298)
46 KOG0131 Splicing factor 3b, su 99.6 3.7E-15 8.1E-20 90.8 6.5 82 40-121 6-87 (203)
47 smart00360 RRM RNA recognition 99.6 2.1E-14 4.6E-19 76.0 8.7 71 48-118 1-71 (71)
48 KOG0108 mRNA cleavage and poly 99.6 6.3E-15 1.4E-19 102.0 8.3 80 44-123 19-98 (435)
49 PLN03213 repressor of silencin 99.6 1.8E-14 3.9E-19 99.6 9.4 77 42-122 9-87 (759)
50 cd00590 RRM RRM (RNA recogniti 99.6 1.5E-13 3.2E-18 73.3 10.2 74 45-119 1-74 (74)
51 KOG0126 Predicted RNA-binding 99.6 4.6E-16 1E-20 94.8 0.3 79 42-120 34-112 (219)
52 PLN03121 nucleic acid binding 99.6 1.1E-13 2.5E-18 88.4 10.7 76 42-121 4-79 (243)
53 KOG0105 Alternative splicing f 99.5 2.4E-14 5.1E-19 87.7 6.6 79 42-123 5-83 (241)
54 KOG0147 Transcriptional coacti 99.5 3.7E-14 8.1E-19 98.6 8.3 119 1-120 228-355 (549)
55 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.3E-18 90.2 10.4 79 43-121 115-193 (306)
56 KOG0144 RNA-binding protein CU 99.5 6.1E-14 1.3E-18 95.3 8.3 84 41-124 32-118 (510)
57 KOG0124 Polypyrimidine tract-b 99.5 4.3E-14 9.4E-19 94.6 4.7 76 44-119 114-189 (544)
58 KOG0123 Polyadenylate-binding 99.5 6.1E-13 1.3E-17 91.2 9.6 121 1-122 122-245 (369)
59 PF13893 RRM_5: RNA recognitio 99.5 8.9E-13 1.9E-17 67.3 7.8 56 60-120 1-56 (56)
60 smart00361 RRM_1 RNA recogniti 99.4 2.1E-12 4.5E-17 68.9 8.3 62 57-118 2-70 (70)
61 KOG1190 Polypyrimidine tract-b 99.4 3E-12 6.4E-17 86.7 10.4 117 1-122 342-490 (492)
62 KOG0110 RNA-binding protein (R 99.4 2.4E-12 5.3E-17 92.0 9.3 121 1-121 428-596 (725)
63 KOG4206 Spliceosomal protein s 99.4 2.5E-12 5.5E-17 80.9 8.1 80 41-123 7-90 (221)
64 KOG0415 Predicted peptidyl pro 99.4 3.4E-12 7.4E-17 85.2 7.2 82 40-121 236-317 (479)
65 KOG0109 RNA-binding protein LA 99.4 2.4E-12 5.3E-17 83.8 6.2 72 44-123 3-74 (346)
66 KOG0146 RNA-binding protein ET 99.4 1.4E-12 3E-17 84.2 5.1 87 38-124 280-366 (371)
67 KOG4208 Nucleolar RNA-binding 99.3 7.4E-12 1.6E-16 77.9 7.9 81 40-120 46-127 (214)
68 KOG4206 Spliceosomal protein s 99.3 5.8E-11 1.2E-15 74.9 10.3 116 1-121 59-220 (221)
69 KOG0153 Predicted RNA-binding 99.3 4.5E-11 9.7E-16 79.5 8.8 78 40-123 225-303 (377)
70 KOG4212 RNA-binding protein hn 99.3 5.1E-11 1.1E-15 81.7 9.0 78 41-119 42-120 (608)
71 KOG4205 RNA-binding protein mu 99.3 1.5E-11 3.3E-16 82.2 6.4 121 1-123 55-176 (311)
72 KOG0146 RNA-binding protein ET 99.3 1.7E-11 3.6E-16 79.3 6.3 98 21-124 2-102 (371)
73 KOG0132 RNA polymerase II C-te 99.2 1.3E-10 2.8E-15 84.2 7.9 75 43-123 421-495 (894)
74 KOG0105 Alternative splicing f 99.2 6E-10 1.3E-14 68.6 9.7 103 1-110 52-175 (241)
75 KOG4211 Splicing factor hnRNP- 99.2 4.9E-10 1.1E-14 77.7 9.8 116 1-119 56-178 (510)
76 KOG1548 Transcription elongati 99.2 4.7E-10 1E-14 74.8 9.2 81 40-121 131-219 (382)
77 KOG1190 Polypyrimidine tract-b 99.1 3.5E-09 7.6E-14 72.2 12.7 73 44-121 298-371 (492)
78 KOG4212 RNA-binding protein hn 99.1 3E-10 6.6E-15 78.0 7.1 76 40-120 533-608 (608)
79 KOG0533 RRM motif-containing p 99.1 1.1E-09 2.5E-14 70.8 8.5 80 42-122 82-161 (243)
80 KOG0120 Splicing factor U2AF, 99.1 2.3E-10 4.9E-15 80.4 5.6 121 1-122 230-368 (500)
81 PF04059 RRM_2: RNA recognitio 99.1 3.6E-09 7.7E-14 59.5 9.3 78 44-121 2-85 (97)
82 KOG1457 RNA binding protein (c 99.1 1.7E-09 3.8E-14 68.4 8.4 64 44-111 211-274 (284)
83 KOG0106 Alternative splicing f 99.0 4.4E-10 9.6E-15 71.3 4.9 111 1-119 42-167 (216)
84 KOG1456 Heterogeneous nuclear 99.0 2.1E-08 4.6E-13 67.9 12.8 75 43-122 287-362 (494)
85 KOG1457 RNA binding protein (c 99.0 9.3E-09 2E-13 65.2 10.0 81 42-122 33-117 (284)
86 KOG1548 Transcription elongati 99.0 2.4E-08 5.1E-13 66.9 11.1 116 3-122 192-351 (382)
87 KOG0226 RNA-binding proteins [ 99.0 3.2E-09 6.9E-14 68.3 6.6 107 14-120 160-267 (290)
88 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.2E-09 1.1E-13 74.3 7.5 79 43-121 405-483 (940)
89 KOG4205 RNA-binding protein mu 98.9 3E-09 6.5E-14 71.3 4.6 81 42-123 5-85 (311)
90 KOG0151 Predicted splicing reg 98.9 1.8E-08 3.9E-13 72.9 8.1 84 38-121 169-255 (877)
91 KOG0116 RasGAP SH3 binding pro 98.9 1.6E-08 3.5E-13 70.3 7.6 78 44-122 289-366 (419)
92 KOG0120 Splicing factor U2AF, 98.8 2.7E-08 5.9E-13 70.2 8.3 121 1-121 338-490 (500)
93 KOG1456 Heterogeneous nuclear 98.8 1.3E-07 2.7E-12 64.2 10.9 121 1-123 332-491 (494)
94 KOG4660 Protein Mei2, essentia 98.8 6.2E-09 1.4E-13 73.2 4.7 70 42-116 74-143 (549)
95 PF11608 Limkain-b1: Limkain b 98.7 4.6E-08 9.9E-13 52.9 4.6 69 44-122 3-76 (90)
96 KOG4211 Splicing factor hnRNP- 98.7 3E-07 6.4E-12 64.2 8.8 78 40-121 7-84 (510)
97 KOG0147 Transcriptional coacti 98.7 3.1E-07 6.7E-12 64.8 9.0 58 58-120 468-525 (549)
98 KOG0106 Alternative splicing f 98.6 5.4E-08 1.2E-12 62.0 4.4 71 44-122 2-72 (216)
99 KOG1365 RNA-binding protein Fu 98.6 6E-08 1.3E-12 65.9 3.6 118 1-120 213-359 (508)
100 KOG4209 Splicing factor RNPS1, 98.6 2.1E-07 4.6E-12 60.3 5.9 80 41-121 99-178 (231)
101 COG5175 MOT2 Transcriptional r 98.4 1.1E-06 2.4E-11 59.1 7.1 81 42-122 113-202 (480)
102 KOG4454 RNA binding protein (R 98.4 1.1E-07 2.3E-12 60.3 1.8 79 40-120 6-84 (267)
103 PF08777 RRM_3: RNA binding mo 98.4 1.7E-06 3.7E-11 49.6 5.6 69 44-118 2-75 (105)
104 KOG3152 TBP-binding protein, a 98.3 6.6E-07 1.4E-11 57.9 2.5 73 42-114 73-157 (278)
105 KOG4210 Nuclear localization s 98.2 3.5E-06 7.6E-11 56.4 5.4 122 1-123 137-264 (285)
106 KOG2314 Translation initiation 98.2 7.8E-06 1.7E-10 58.4 7.2 77 42-119 57-140 (698)
107 KOG1995 Conserved Zn-finger pr 98.2 1.7E-06 3.7E-11 58.4 3.6 82 42-123 65-154 (351)
108 PF13893 RRM_5: RNA recognitio 98.2 2.1E-06 4.6E-11 43.5 3.1 29 1-29 28-56 (56)
109 KOG0115 RNA-binding protein p5 98.2 1E-05 2.2E-10 52.5 6.5 90 4-106 4-93 (275)
110 KOG4307 RNA binding protein RB 98.0 3.6E-05 7.8E-10 56.4 7.7 75 44-119 868-943 (944)
111 KOG0128 RNA-binding protein SA 97.9 3.2E-06 6.9E-11 62.6 0.6 79 43-122 736-814 (881)
112 PF05172 Nup35_RRM: Nup53/35/4 97.9 0.00012 2.7E-09 41.5 6.5 78 42-121 5-90 (100)
113 PF14605 Nup35_RRM_2: Nup53/35 97.9 7.1E-05 1.5E-09 37.5 5.0 52 44-102 2-53 (53)
114 COG0724 RNA-binding proteins ( 97.9 0.00011 2.4E-09 48.1 7.4 79 1-79 164-261 (306)
115 KOG1365 RNA-binding protein Fu 97.8 0.00066 1.4E-08 46.9 9.7 102 1-104 109-225 (508)
116 PF08675 RNA_bind: RNA binding 97.6 0.00067 1.4E-08 36.9 6.5 59 40-107 6-64 (87)
117 KOG0129 Predicted RNA-binding 97.6 0.00042 9E-09 49.3 6.9 65 39-103 366-431 (520)
118 PF08952 DUF1866: Domain of un 97.5 0.0019 4.1E-08 39.0 8.2 74 40-122 24-106 (146)
119 KOG4849 mRNA cleavage factor I 97.5 0.00015 3.3E-09 49.3 3.7 72 43-114 80-153 (498)
120 KOG4307 RNA binding protein RB 97.5 0.00038 8.1E-09 51.4 5.7 117 1-119 359-510 (944)
121 smart00361 RRM_1 RNA recogniti 97.5 0.00018 3.8E-09 38.1 3.1 26 1-26 44-69 (70)
122 PLN03134 glycine-rich RNA-bind 97.4 0.00031 6.7E-09 42.6 4.5 33 1-33 83-115 (144)
123 KOG0112 Large RNA-binding prot 97.4 0.00021 4.6E-09 53.8 3.9 77 40-122 452-530 (975)
124 KOG1996 mRNA splicing factor [ 97.4 0.0013 2.9E-08 43.9 6.9 63 58-120 301-364 (378)
125 KOG0128 RNA-binding protein SA 97.3 8.4E-06 1.8E-10 60.5 -4.3 70 44-113 668-737 (881)
126 KOG2416 Acinus (induces apopto 97.2 0.0005 1.1E-08 49.8 4.1 77 39-121 440-520 (718)
127 KOG0129 Predicted RNA-binding 97.2 0.003 6.6E-08 45.1 7.8 65 39-104 255-325 (520)
128 PF00076 RRM_1: RNA recognitio 97.1 0.00062 1.4E-08 35.4 2.6 25 1-25 46-70 (70)
129 KOG1855 Predicted RNA-binding 97.0 0.00088 1.9E-08 46.8 3.6 67 41-107 229-308 (484)
130 KOG2202 U2 snRNP splicing fact 96.9 0.00053 1.2E-08 44.7 1.8 63 58-121 83-146 (260)
131 KOG0107 Alternative splicing f 96.8 0.0013 2.8E-08 40.8 2.7 34 1-34 54-87 (195)
132 PF10309 DUF2414: Protein of u 96.7 0.027 5.9E-07 29.0 6.9 56 42-105 4-62 (62)
133 KOG2068 MOT2 transcription fac 96.6 0.00042 9.2E-09 46.8 -0.4 83 40-123 74-163 (327)
134 KOG0130 RNA-binding protein RB 96.6 0.0016 3.4E-08 38.8 1.8 32 1-32 121-152 (170)
135 KOG4676 Splicing factor, argin 96.5 0.0093 2E-07 41.5 5.4 75 44-119 8-85 (479)
136 KOG0111 Cyclophilin-type pepti 96.5 0.0028 6.1E-08 40.8 2.7 35 1-35 59-93 (298)
137 KOG2193 IGF-II mRNA-binding pr 96.4 0.00012 2.5E-09 51.0 -3.9 107 3-119 46-153 (584)
138 PF11608 Limkain-b1: Limkain b 96.4 0.0047 1E-07 33.8 2.7 32 1-32 46-77 (90)
139 cd00590 RRM RRM (RNA recogniti 96.4 0.0067 1.5E-07 31.3 3.4 28 1-28 47-74 (74)
140 KOG2591 c-Mpl binding protein, 96.3 0.027 5.9E-07 41.0 7.0 69 42-117 174-246 (684)
141 smart00362 RRM_2 RNA recogniti 96.3 0.0067 1.4E-07 31.1 3.2 27 1-27 46-72 (72)
142 KOG2193 IGF-II mRNA-binding pr 96.3 0.0057 1.2E-07 43.0 3.5 74 44-123 2-76 (584)
143 smart00360 RRM RNA recognition 96.3 0.0068 1.5E-07 30.9 3.1 27 1-27 45-71 (71)
144 KOG0804 Cytoplasmic Zn-finger 96.2 0.057 1.2E-06 38.4 8.0 70 40-111 71-141 (493)
145 KOG0125 Ataxin 2-binding prote 96.2 0.0051 1.1E-07 41.7 2.9 32 1-32 143-174 (376)
146 PF14259 RRM_6: RNA recognitio 96.2 0.006 1.3E-07 31.8 2.6 25 1-25 46-70 (70)
147 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.014 3E-07 36.7 4.1 70 42-111 6-81 (176)
148 PF15023 DUF4523: Protein of u 95.9 0.094 2E-06 31.7 6.9 73 40-120 83-159 (166)
149 PF07576 BRAP2: BRCA1-associat 95.9 0.16 3.4E-06 29.4 9.6 68 42-111 11-80 (110)
150 KOG0108 mRNA cleavage and poly 95.8 0.011 2.3E-07 42.2 3.3 34 1-34 67-100 (435)
151 KOG4660 Protein Mei2, essentia 95.8 0.026 5.7E-07 40.8 5.2 78 44-121 389-471 (549)
152 PF04847 Calcipressin: Calcipr 95.7 0.063 1.4E-06 34.0 6.1 60 56-121 8-69 (184)
153 KOG0112 Large RNA-binding prot 95.7 0.0024 5.2E-08 48.4 -0.4 78 42-120 371-448 (975)
154 KOG4285 Mitotic phosphoprotein 95.6 0.071 1.5E-06 36.0 6.2 69 43-119 197-266 (350)
155 KOG4207 Predicted splicing fac 95.5 0.0081 1.8E-07 38.4 1.4 30 1-30 62-91 (256)
156 KOG0114 Predicted RNA-binding 94.9 0.035 7.5E-07 31.7 2.6 33 1-33 64-96 (124)
157 KOG2253 U1 snRNP complex, subu 94.5 0.041 8.9E-07 40.7 3.0 71 39-118 36-106 (668)
158 PLN03120 nucleic acid binding 94.5 0.097 2.1E-06 34.8 4.4 32 1-33 50-81 (260)
159 PF11767 SET_assoc: Histone ly 94.1 0.41 8.9E-06 25.0 6.7 55 54-117 11-65 (66)
160 KOG4454 RNA binding protein (R 93.5 0.021 4.6E-07 36.9 0.0 94 1-109 56-149 (267)
161 KOG2202 U2 snRNP splicing fact 93.3 0.087 1.9E-06 34.8 2.6 30 1-30 117-146 (260)
162 KOG0121 Nuclear cap-binding pr 93.2 0.074 1.6E-06 31.6 1.9 28 2-29 86-113 (153)
163 KOG4574 RNA-binding protein (c 92.5 0.11 2.3E-06 39.9 2.4 72 45-122 300-373 (1007)
164 KOG2135 Proteins containing th 91.6 0.15 3.3E-06 36.6 2.2 72 44-122 373-445 (526)
165 PF08952 DUF1866: Domain of un 91.4 0.23 5.1E-06 30.1 2.6 30 1-31 77-106 (146)
166 PLN03121 nucleic acid binding 91.2 0.54 1.2E-05 31.0 4.3 32 1-33 51-82 (243)
167 PLN03213 repressor of silencin 91.2 0.19 4.2E-06 36.5 2.4 26 5-30 61-86 (759)
168 KOG4410 5-formyltetrahydrofola 90.6 2 4.3E-05 29.2 6.5 48 43-95 330-377 (396)
169 PF03880 DbpA: DbpA RNA bindin 89.9 1.8 4E-05 22.9 6.4 59 53-120 11-74 (74)
170 KOG1996 mRNA splicing factor [ 89.8 0.37 7.9E-06 32.7 2.6 28 1-28 336-363 (378)
171 PF07292 NID: Nmi/IFP 35 domai 89.6 2.3 5E-05 23.6 5.8 64 1-65 5-74 (88)
172 KOG0226 RNA-binding proteins [ 88.4 0.24 5.2E-06 32.8 1.0 30 1-30 239-268 (290)
173 KOG4210 Nuclear localization s 86.4 0.8 1.7E-05 31.1 2.7 74 42-115 87-160 (285)
174 KOG4208 Nucleolar RNA-binding 86.0 0.74 1.6E-05 29.6 2.2 32 1-32 99-130 (214)
175 COG5175 MOT2 Transcriptional r 85.7 0.95 2E-05 31.4 2.8 29 1-29 172-200 (480)
176 PF11767 SET_assoc: Histone ly 85.4 1.3 2.8E-05 23.2 2.6 26 1-26 40-65 (66)
177 PF15513 DUF4651: Domain of un 84.7 3.4 7.4E-05 21.3 3.9 21 58-78 9-29 (62)
178 PF05172 Nup35_RRM: Nup53/35/4 83.6 0.99 2.1E-05 25.7 1.9 28 1-29 61-89 (100)
179 KOG0132 RNA polymerase II C-te 81.7 1.6 3.5E-05 33.6 2.8 63 3-65 466-528 (894)
180 KOG0151 Predicted splicing reg 81.1 1.6 3.6E-05 33.3 2.6 31 1-31 226-256 (877)
181 KOG0533 RRM motif-containing p 80.4 2.7 5.8E-05 28.0 3.2 34 1-34 131-164 (243)
182 PF04847 Calcipressin: Calcipr 78.4 2.2 4.8E-05 27.1 2.3 31 1-31 38-70 (184)
183 PF03468 XS: XS domain; Inter 76.6 8 0.00017 22.6 4.1 47 45-94 10-65 (116)
184 PF07530 PRE_C2HC: Associated 75.7 9.6 0.00021 20.0 4.2 64 58-124 2-66 (68)
185 KOG4661 Hsp27-ERE-TATA-binding 75.1 3.1 6.6E-05 31.2 2.5 30 1-30 454-483 (940)
186 KOG4483 Uncharacterized conser 73.5 14 0.00031 26.5 5.3 56 42-104 390-446 (528)
187 KOG0153 Predicted RNA-binding 70.8 5.8 0.00013 27.8 2.9 31 1-31 271-302 (377)
188 smart00596 PRE_C2HC PRE_C2HC d 70.5 14 0.0003 19.5 3.9 62 58-122 2-64 (69)
189 KOG0126 Predicted RNA-binding 70.2 0.55 1.2E-05 29.7 -1.8 27 2-28 85-111 (219)
190 PF14111 DUF4283: Domain of un 68.8 0.78 1.7E-05 27.7 -1.4 31 45-75 106-137 (153)
191 KOG4019 Calcineurin-mediated s 67.3 6.4 0.00014 25.0 2.4 58 59-122 31-89 (193)
192 KOG4008 rRNA processing protei 65.2 6.8 0.00015 25.9 2.3 32 41-72 38-69 (261)
193 KOG0415 Predicted peptidyl pro 63.3 6.6 0.00014 27.7 2.1 30 1-30 288-317 (479)
194 KOG4213 RNA-binding protein La 61.7 16 0.00034 23.3 3.3 56 44-104 112-169 (205)
195 KOG2295 C2H2 Zn-finger protein 59.1 0.94 2E-05 33.4 -2.5 70 42-111 230-299 (648)
196 KOG2891 Surface glycoprotein [ 58.0 13 0.00028 25.4 2.7 38 39-76 145-194 (445)
197 PF10567 Nab6_mRNP_bdg: RNA-re 57.5 39 0.00084 23.3 4.8 81 40-120 12-105 (309)
198 KOG2314 Translation initiation 57.2 8.2 0.00018 29.0 1.8 27 1-27 112-139 (698)
199 PHA01632 hypothetical protein 54.9 17 0.00036 18.3 2.2 19 48-66 21-39 (64)
200 KOG0113 U1 small nuclear ribon 46.7 30 0.00066 23.9 3.1 31 1-31 150-180 (335)
201 KOG1995 Conserved Zn-finger pr 46.5 11 0.00023 26.5 1.0 33 1-33 123-155 (351)
202 KOG4209 Splicing factor RNPS1, 42.9 26 0.00056 23.2 2.3 31 1-32 150-180 (231)
203 COG0481 LepA Membrane GTPase L 42.2 95 0.0021 23.4 5.1 69 36-105 290-360 (603)
204 cd00027 BRCT Breast Cancer Sup 41.7 44 0.00096 16.2 3.2 27 44-70 2-28 (72)
205 PRK10905 cell division protein 39.0 1.4E+02 0.003 21.1 5.4 60 42-106 246-307 (328)
206 PRK11901 hypothetical protein; 37.8 1.5E+02 0.0031 21.0 7.0 60 42-106 244-305 (327)
207 PF11411 DNA_ligase_IV: DNA li 37.2 35 0.00075 15.5 1.6 15 54-68 20-34 (36)
208 COG0030 KsgA Dimethyladenosine 37.2 73 0.0016 21.6 3.8 27 44-70 96-122 (259)
209 PF15407 Spo7_2_N: Sporulation 37.2 14 0.00031 19.4 0.4 23 41-63 25-47 (67)
210 KOG4365 Uncharacterized conser 36.3 4.7 0.0001 29.2 -1.9 74 45-119 5-78 (572)
211 KOG4676 Splicing factor, argin 35.3 14 0.00031 26.5 0.2 61 44-109 152-212 (479)
212 PRK10629 EnvZ/OmpR regulon mod 34.6 1E+02 0.0022 18.4 7.8 71 43-121 35-109 (127)
213 PF02946 GTF2I: GTF2I-like rep 34.3 72 0.0016 17.2 2.8 29 44-72 35-71 (76)
214 KOG2318 Uncharacterized conser 34.1 97 0.0021 23.7 4.2 34 86-119 269-304 (650)
215 PF10281 Ish1: Putative stress 32.7 53 0.0011 14.8 1.9 17 54-70 3-19 (38)
216 COG5507 Uncharacterized conser 32.1 79 0.0017 18.0 2.8 22 84-105 65-86 (117)
217 PHA02531 20 portal vertex prot 31.9 77 0.0017 23.7 3.4 65 8-83 252-317 (514)
218 PF03439 Spt5-NGN: Early trans 31.6 92 0.002 16.9 3.5 27 84-110 43-69 (84)
219 PF14893 PNMA: PNMA 31.4 49 0.0011 23.3 2.3 26 41-66 16-41 (331)
220 KOG1295 Nonsense-mediated deca 29.9 1.1E+02 0.0023 22.1 3.7 68 43-110 7-77 (376)
221 PF11823 DUF3343: Protein of u 27.5 1E+02 0.0022 16.0 2.9 22 87-108 3-24 (73)
222 cd06257 DnaJ DnaJ domain or J- 26.1 69 0.0015 15.1 1.8 20 48-67 5-24 (55)
223 KOG0829 60S ribosomal protein 26.0 1.3E+02 0.0028 18.8 3.1 47 59-105 43-90 (169)
224 COG5193 LHP1 La protein, small 25.9 32 0.0007 24.8 0.7 60 44-103 175-244 (438)
225 COG0150 PurM Phosphoribosylami 24.7 29 0.00062 24.5 0.3 49 56-108 274-322 (345)
226 PF00398 RrnaAD: Ribosomal RNA 23.9 1.1E+02 0.0024 20.4 3.0 24 42-65 96-119 (262)
227 PF00220 Hormone_4: Neurohypop 23.6 37 0.00081 10.4 0.3 6 47-52 2-7 (9)
228 cd00018 AP2 DNA-binding domain 23.0 92 0.002 15.5 2.0 13 1-13 32-44 (61)
229 smart00380 AP2 DNA-binding dom 22.0 98 0.0021 15.6 2.0 13 1-13 31-43 (64)
230 smart00271 DnaJ DnaJ molecular 21.7 93 0.002 15.0 1.8 20 48-67 6-25 (60)
231 PHA00147 upper collar protein 21.4 1.5E+02 0.0032 20.6 3.1 25 49-73 42-66 (308)
232 PF08383 Maf_N: Maf N-terminal 21.2 88 0.0019 14.1 1.4 10 3-12 24-33 (35)
233 PF11181 YflT: Heat induced st 21.2 88 0.0019 17.6 1.8 28 1-28 6-33 (103)
234 KOG4840 Predicted hydrolases o 20.4 2.9E+02 0.0063 18.8 4.8 66 41-111 35-106 (299)
235 TIGR00755 ksgA dimethyladenosi 20.1 1.9E+02 0.004 19.2 3.4 24 45-68 96-119 (253)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=8.6e-24 Score=143.15 Aligned_cols=118 Identities=30% Similarity=0.516 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|++|+++||+..+.+++|+|.++.+... ....++|||+|||..+++++|+++|++||.|..+.++.+..
T Consensus 156 F~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~-----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 156 FGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL 230 (346)
T ss_pred EccHHHHHHHHHHcCCCccCCceeeeeccccccc-----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC
Confidence 7899999999999999999999999999765332 23467899999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
+++++++|||+|.+.++|++|++.|++..+.+ ..|.|.+++..
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999999999999999999999999998865 68999887653
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=5.1e-23 Score=140.37 Aligned_cols=80 Identities=33% Similarity=0.519 Sum_probs=76.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
..|||+|||.++++++|+++|++||.|..++++++..++.++|||||+|.+.++|..|+..|||..++|+.|+|.|...+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 36999999999999999999999999999999999889999999999999999999999999999999999999997755
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=4e-23 Score=147.06 Aligned_cols=123 Identities=19% Similarity=0.339 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC------CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~ 74 (125)
|.+.++|++|+..|||..+.|+.|+|.++....... .......++|||+|||.++++++|+++|+.||.|..++
T Consensus 156 F~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svr 235 (612)
T TIGR01645 156 YEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ 235 (612)
T ss_pred eCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEE
Confidence 789999999999999999999999998754332111 11123457899999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 75 ~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.+++.++.++|||||+|.+.++|.+|+..+|++.++|+.|+|.++.++
T Consensus 236 l~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 236 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred EEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999888999999999999999999999999999999999999997754
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=7.3e-22 Score=125.97 Aligned_cols=118 Identities=27% Similarity=0.514 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|-+++||++||..|||.++..+.|+|.|+++.... ..+..|||++||..++..+|+.+|++||.|...++..+..
T Consensus 90 Yv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~-----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 90 YVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS-----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred ecChHHHHHHHhhhcceeeccceEEEEeccCChhh-----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 45789999999999999999999999999876543 3667899999999999999999999999999999999989
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe--EEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGR--AMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~--~i~v~~~~~~ 123 (125)
+|.++|.+||.|+.+++|+.|++.|+|..-.|+ .|.|.|+..+
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999999999999999999999999887655 6999997754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.87 E-value=8.9e-21 Score=129.39 Aligned_cols=118 Identities=24% Similarity=0.507 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+... ......|||+|||..+++++|+.+|++||.+..+.+..+..
T Consensus 52 f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 52 YVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD-----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred ECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 6789999999999999999999999999865432 22456899999999999999999999999999999988877
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
++.++|+|||+|.+.++|+.|++.|+|..+.| ..|.+.++..+
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 88899999999999999999999999998876 56888887644
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=1.1e-20 Score=132.77 Aligned_cols=120 Identities=36% Similarity=0.610 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC-------CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~-------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~ 73 (125)
|.+.++|.+|+. ++|..+.|++|.|.++....... ....+...+|||+|||..+++++|+++|..||.|..+
T Consensus 138 F~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 138 FYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred ECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 789999999997 99999999999998764432211 1112336899999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 74 ~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+..+..+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 999998888999999999999999999999999999999999999965
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.1e-20 Score=134.37 Aligned_cols=120 Identities=21% Similarity=0.395 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC------------------------CCCCCCCcEEEEcCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL------------------------PLYAETDFKLFVGNLSWSVT 56 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~------------------------~~~~~~~~~l~i~~lp~~~~ 56 (125)
|.+.++|..||. |||..+.|++|+|..+....... ........+|||+|||..++
T Consensus 230 F~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 308 (509)
T TIGR01642 230 FRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLG 308 (509)
T ss_pred eCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 789999999995 99999999999997543221000 00123457899999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 57 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++|+++|..||.|..+.++.+..+|.++|||||+|.+.+.|..|+..|+|..+.|..|.|.++.
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 99999999999999999999988899999999999999999999999999999999999999975
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.4e-21 Score=121.68 Aligned_cols=116 Identities=25% Similarity=0.497 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC-----------CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-----------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 69 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~-----------~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~ 69 (125)
|-..++|++||..|||..|+.|.|+.+|+..+..... --.+..++||++|++..+++++|++.|+.||.
T Consensus 111 f~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 111 FPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred ccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 5678999999999999999999999999865442221 12345699999999999999999999999999
Q ss_pred eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 70 VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 70 i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
|.++++..+ +||+||.|.+.|.|..||-.+|+..|.|..+++.+-+.
T Consensus 191 I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 191 IQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 999998876 68999999999999999999999999999999998654
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=1.3e-20 Score=135.43 Aligned_cols=122 Identities=34% Similarity=0.575 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHhcCCCccC----CeEEEEeccCCCCCCC-------------CCCCCCCcEEEEcCCCCCCCHHHHHHH
Q 033218 1 MSTVEDCNAVIENLDGREYL----GRILRVNFSDKPKPKL-------------PLYAETDFKLFVGNLSWSVTTESLTQA 63 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~----~~~i~v~~~~~~~~~~-------------~~~~~~~~~l~i~~lp~~~~~~~l~~~ 63 (125)
|.+.++|.+|++.+||..+. |+.+.+.++..+.+.. ........+|||+|||..+++++|+++
T Consensus 226 F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~ 305 (562)
T TIGR01628 226 FEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLREL 305 (562)
T ss_pred ECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHH
Confidence 78999999999999999999 9999998775543321 011335678999999999999999999
Q ss_pred HhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 64 f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+.||.|..+++..+ .+|.++|+|||.|.+.++|.+|+..+|+..++|+.|.|.++..+
T Consensus 306 F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 306 FSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999999998 78999999999999999999999999999999999999998765
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=7.7e-20 Score=110.33 Aligned_cols=85 Identities=42% Similarity=0.784 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
....+++|||+|||..+++++|+++|.+||.|..+.++.+..++.+++||||+|.+.++|+.|++.|++..|.|+.|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98755
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.84 E-value=9.2e-20 Score=129.72 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHhcCC--CccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEe
Q 033218 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVL 76 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~--g~i~~~~~~ 76 (125)
|.+.++|..|++.++. ..+.|+.|.|.|+.+.............+|||+|||.++++++|+++|++| |.|..+.++
T Consensus 189 F~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 189 YESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred cCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 7889999999998864 467899999999887654443334556889999999999999999999999 999988664
Q ss_pred ecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 77 YDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 77 ~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++||||+|.+.++|.+|+..||+..|.|+.|+|.+++++
T Consensus 269 --------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 269 --------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred --------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 359999999999999999999999999999999999864
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=1.1e-19 Score=128.56 Aligned_cols=121 Identities=23% Similarity=0.344 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC--------------------------------CCCCCCcEEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP--------------------------------LYAETDFKLFV 48 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~--------------------------------~~~~~~~~l~i 48 (125)
|.+.++|..|+..|||..|.|++|+|.++........ ...+++.+|||
T Consensus 320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 7899999999999999999999999998744211000 00134678999
Q ss_pred cCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE------EEEEec
Q 033218 49 GNLSWSVTTESLTQAFQEYGN--VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA------MRVSLA 120 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~------i~v~~~ 120 (125)
+|||.++++++|+++|+.||. +..+++... .++ .+++|||+|.+.++|..|+..||+..+.++. |+|+|+
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~-~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPK-DNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecC-CCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999997 777766533 223 5789999999999999999999999998874 999999
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 478 ~~~ 480 (481)
T TIGR01649 478 TSR 480 (481)
T ss_pred cCC
Confidence 876
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=2.2e-19 Score=129.10 Aligned_cols=122 Identities=29% Similarity=0.434 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|++.++|.+|++.+||..+.++.|.+.................++|||+|||.++++++|+++|+.||.|..+.+..+ .
T Consensus 136 F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~ 214 (562)
T TIGR01628 136 FEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-G 214 (562)
T ss_pred ECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C
Confidence 789999999999999999999999997655443332334455678999999999999999999999999999998888 5
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeC----CeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELE----GRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~----g~~i~v~~~~~~ 123 (125)
++.++|+|||.|.+.++|.+|++.|++..+. |..+.+..+..+
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 7889999999999999999999999999999 999999876543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3e-20 Score=125.38 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHhcCC-CccCC--eEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 033218 1 MSTVEDCNAVIENLDG-REYLG--RILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~-~~~~~--~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 77 (125)
|.+.++|++|+.+|+. +.+.| .+|.|.|+....++. ...++|||+.|+..++|.+++++|++||.|+++++.+
T Consensus 83 ~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 83 YYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred eccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 5678999999999988 55655 589999988766553 4567899999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeecHHHHHHHHHHhCCC-eeCCe--EEEEEecCCCC
Q 033218 78 DGESGRSRGYGFVCYSTKAEMETALESLNGV-ELEGR--AMRVSLAQGRR 124 (125)
Q Consensus 78 ~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~-~~~g~--~i~v~~~~~~~ 124 (125)
+ ..+.++||+||.|.+++.|..|++.||+. +++|+ .|.|+|++++|
T Consensus 159 d-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 159 D-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred c-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 9 67899999999999999999999999994 67766 69999999875
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.82 E-value=2.9e-19 Score=127.23 Aligned_cols=117 Identities=23% Similarity=0.388 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC
Q 033218 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 83 (125)
.+.|.+|+.+++|+.+........|..++..+....+...++|||+|||.++++++|+++|+++|.|..++++++ .+|.
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~ 97 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ 97 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC
Confidence 578899999999999999888888887776666556677899999999999999999999999999999999999 8899
Q ss_pred ceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEecC
Q 033218 84 SRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQ 121 (125)
Q Consensus 84 ~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~~ 121 (125)
+++||||+|.+.++|++|++.|++..+. ++.|.++.+.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 9999999999999999999999999885 6777666543
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.2e-19 Score=119.83 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=107.3
Q ss_pred CHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC
Q 033218 3 TVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG 82 (125)
Q Consensus 3 ~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~ 82 (125)
+.++|.+||.+-.|..+.-..-...+..++..+....++.++.|||++||.++.+++|.-+|.+.|+|-+++++.++.+|
T Consensus 43 ~~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG 122 (506)
T KOG0117|consen 43 SEEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSG 122 (506)
T ss_pred cHHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCC
Confidence 45788899998898888766666677777777777778899999999999999999999999999999999999999999
Q ss_pred CceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEecCC
Q 033218 83 RSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQG 122 (125)
Q Consensus 83 ~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~~~ 122 (125)
.++|||||.|.+.+.|+.|++.||++.|. |+.|.|+.+..
T Consensus 123 ~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 123 DNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred CCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 99999999999999999999999999994 88999987653
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=9.5e-20 Score=110.59 Aligned_cols=119 Identities=29% Similarity=0.508 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~ 79 (125)
|.+.|||+.|++-||+..+.|++|+|..++..... .+-+..+||+||.+.+++..|.+.|+.||.+.. .++.+++
T Consensus 58 f~~eedadYAikiln~VkLYgrpIrv~kas~~~~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 58 FRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred EechhhhHHHHHHHHHHHhcCceeEEEeccccccc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 67899999999999999999999999988733322 233478999999999999999999999998765 4788888
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+|.+++++|+.|.+.+.+.+|+..++|..+.++.+.+.++..+
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 99999999999999999999999999999999999999997654
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.4e-19 Score=120.72 Aligned_cols=72 Identities=35% Similarity=0.548 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
..|||.||+.++|++.|+++|.+||.+.+++.+++ ||||.|.++++|.+|++.+++..|+|..|.|.+++|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 68999999999999999999999999999876644 9999999999999999999999999999999999975
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.81 E-value=2.9e-18 Score=121.27 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHhc--CCCccCCeEEEEeccCCCCCCCCC-------CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCee
Q 033218 1 MSTVEDCNAVIENL--DGREYLGRILRVNFSDKPKPKLPL-------YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 1 f~~~~~a~~a~~~~--~~~~~~~~~i~v~~~~~~~~~~~~-------~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~ 71 (125)
|.+.++|++|+..+ ++..+.|++|+|.|+..+...... .......|+|.||+..+++++|+++|+.||.|.
T Consensus 45 f~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 45 FEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred eCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 78999999999974 789999999999998654322211 111234789999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEecCCC
Q 033218 72 GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 72 ~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
.+.+.++.. .++|||+|.+.++|.+|++.|||..|.+ +.|+|.|++++
T Consensus 125 ~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 125 RIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 998876532 3689999999999999999999999853 58999998753
No 20
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.78 E-value=6.5e-18 Score=90.11 Aligned_cols=70 Identities=41% Similarity=0.785 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
|||+|||..+++++|+++|++||.+..+.+..+ .++..+++|||+|.+.++|+.|+..++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 7788999999999999999999999999999999885
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.2e-17 Score=114.00 Aligned_cols=109 Identities=29% Similarity=0.569 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.++++|.+|+.++|...+.|+++++-|+...... +||.||+++++...|.+.|+.||+|..+++..+ .
T Consensus 44 f~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~ 112 (369)
T KOG0123|consen 44 FQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-E 112 (369)
T ss_pred cCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-C
Confidence 78999999999999999999999999997644322 999999999999999999999999999999998 4
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.| ++|| ||+|++.+.|+.|+..+||..+.++.|-+.....
T Consensus 113 ~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 113 NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45 8999 9999999999999999999999999998866443
No 22
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=8.3e-18 Score=106.37 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
...+|-|+|||.++++.+|+++|.+||.+.++.+.+++.+|.++|||||.|.++++|.+|+..|+|+-.++--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.2e-17 Score=113.43 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||++||.++++++|+++|..||.|..++++.+..++.+++||||+|.+.++|++|+..|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 97653
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.7e-17 Score=115.10 Aligned_cols=122 Identities=25% Similarity=0.463 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC---------------------CCCCCCcEEEEcCCCCCCCHHH
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP---------------------LYAETDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~---------------------~~~~~~~~l~i~~lp~~~~~~~ 59 (125)
|+-.||++.|+++.++..|.|+.|.|..+..+..... ....+.+.|.|.|||+++..++
T Consensus 54 Fam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~d 133 (678)
T KOG0127|consen 54 FAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPD 133 (678)
T ss_pred eehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHH
Confidence 5678999999999999999999999988754433220 0123367899999999999999
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 60 l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+.+|+.||.+..+.|++. ..|+.+|||||.|....+|..|++.+++..|.|+.|.|-|+-++
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred HHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999999977 55667799999999999999999999999999999999997654
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3.4e-16 Score=100.29 Aligned_cols=123 Identities=28% Similarity=0.465 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHhcCCCccCC--eEEEEeccCCCCCCC------------------------------------------
Q 033218 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPKL------------------------------------------ 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~--~~i~v~~~~~~~~~~------------------------------------------ 36 (125)
|...++|+.||+.|||..=.| .+|.|.|+..+....
T Consensus 176 FDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rf 255 (360)
T KOG0145|consen 176 FDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARF 255 (360)
T ss_pred ecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccC
Confidence 566789999999999977765 589998874432211
Q ss_pred ----------------CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHH
Q 033218 37 ----------------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100 (125)
Q Consensus 37 ----------------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 100 (125)
+..+...+.|||-||..+.++..|+++|++||.+..++++++..+.+.+||+||.+.+.++|..
T Consensus 256 sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAam 335 (360)
T KOG0145|consen 256 SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 335 (360)
T ss_pred CCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHH
Confidence 0011224789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEecCCC
Q 033218 101 ALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 101 ~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+..|+|+.++++.|.|.|...+
T Consensus 336 Ai~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 336 AIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999986543
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.71 E-value=5.8e-16 Score=110.34 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC-----------------------CCCCCCCcEEEEcCCCCCC--
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-----------------------PLYAETDFKLFVGNLSWSV-- 55 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~-----------------------~~~~~~~~~l~i~~lp~~~-- 55 (125)
|.+.++|..|+..|||..+.|+.|.|.++....... .....++.+|+|.|+....
T Consensus 344 f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l 423 (509)
T TIGR01642 344 YKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDL 423 (509)
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHh
Confidence 788999999999999999999999999874321110 0112356788999986421
Q ss_pred --------CHHHHHHHHhcCCCeeEEEEeecC---CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 56 --------TTESLTQAFQEYGNVVGARVLYDG---ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 56 --------~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|++.|.+||.|..+.++++. .++...|++||+|.+.++|+.|+..|||..++|+.|.+.|..
T Consensus 424 ~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 424 MDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred cCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 125789999999999999988752 234457899999999999999999999999999999999864
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.71 E-value=2.8e-16 Score=83.97 Aligned_cols=70 Identities=39% Similarity=0.715 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
|||+|||.++++++|+++|+.+|.|..+.+...+. +..+++|||+|.+.++|..|+..+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 88999999999999999999999999999999874
No 28
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=105.13 Aligned_cols=81 Identities=28% Similarity=0.589 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
...+.|||+|+|+...+.||+.+|.+||.|..+.|+.... -++|||||.|++.++|++|-..|||..++|++|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3457899999999999999999999999999999988854 37899999999999999999999999999999999987
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.++
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 653
No 29
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=8.2e-17 Score=92.83 Aligned_cols=80 Identities=26% Similarity=0.475 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
..+++|||+||...++++.|.++|+++|.|..+.+-.+..+-.+.|||||+|.+.++|..|++.+++..++.+.|++-+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35799999999999999999999999999999999999888889999999999999999999999999999999998763
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1e-16 Score=113.83 Aligned_cols=122 Identities=23% Similarity=0.406 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC-C---CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-P---LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVL 76 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~-~---~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 76 (125)
|.++++|+.|++.|+|..+.|+.|.+.++....... . ......+.|.|.|+|+..+..+++.+|..||++..++++
T Consensus 567 F~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlP 646 (725)
T KOG0110|consen 567 FAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLP 646 (725)
T ss_pred ecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccc
Confidence 789999999999999999999999999987222111 1 112234789999999999999999999999999999998
Q ss_pred ecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 77 YDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 77 ~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.....+.++|||||.|-++.+|..|+..|.+.-+.|++|.+.|+..
T Consensus 647 KK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 647 KKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred hhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 8766677899999999999999999999999999999999999864
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1e-15 Score=106.42 Aligned_cols=80 Identities=35% Similarity=0.615 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh-----CC-CeeCCeEEEE
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL-----NG-VELEGRAMRV 117 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l-----~~-~~~~g~~i~v 117 (125)
.+|||.|||+++++++|...|++||.+....++.++.|+.+.|.|||.|.+...|+.||... .| +.+.|+.|.|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 68999999999999999999999999999999999999999999999999999999999876 23 5678999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
..+-++
T Consensus 373 ~~Av~R 378 (678)
T KOG0127|consen 373 TLAVTR 378 (678)
T ss_pred eeccch
Confidence 887554
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=103.06 Aligned_cols=107 Identities=29% Similarity=0.506 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC
Q 033218 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 2 ~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 81 (125)
++...|..||..|+|+.++|..|.|+-+..+ ...+++++|+|+.+.++..+++..|.+||.+.++.++++
T Consensus 44 EdktaaedairNLhgYtLhg~nInVeaSksK-------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--- 113 (346)
T KOG0109|consen 44 EDKTAAEDAIRNLHGYTLHGVNINVEASKSK-------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--- 113 (346)
T ss_pred ecccccHHHHhhcccceecceEEEEEecccc-------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc---
Confidence 4566788999999999999999999987655 335678999999999999999999999999999988755
Q ss_pred CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 82 ~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+||.|.-.++|..+++.|++..+.|.+++|+++..+
T Consensus 114 -----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 114 -----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred -----eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 8999999999999999999999999999999998765
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=4.5e-16 Score=111.46 Aligned_cols=80 Identities=26% Similarity=0.603 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||.++++++|+++|.+||.|..+.+++++.+|+++|||||+|.+.++|++|+..|||..+.|+.|+|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999997643
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.7e-16 Score=104.99 Aligned_cols=121 Identities=20% Similarity=0.372 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC------CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~------~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~ 74 (125)
|+-+|.|+.|++.|||.-++|+.|+|..++.-...-+ .....-..|||..+..+.++++|+..|..||+|..+.
T Consensus 162 YEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~ 241 (544)
T KOG0124|consen 162 YEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ 241 (544)
T ss_pred EeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEE
Confidence 5678999999999999999999999996654332211 1122346899999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 75 ~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+.+.+..+.++||+|++|.+......|+..+|-+.++|..|+|-.+-
T Consensus 242 LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 242 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred eeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999999999999999999999999999999986644
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=83.60 Aligned_cols=83 Identities=28% Similarity=0.455 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
..++.-...|||.|||.+++.+++.++|.+||.|..+++--.+. .+|-|||.|++..+|..||..|.|+.+.+..+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34455678999999999999999999999999999998865543 588999999999999999999999999999999
Q ss_pred EEecCC
Q 033218 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|-|-.+
T Consensus 89 vlyyq~ 94 (124)
T KOG0114|consen 89 VLYYQP 94 (124)
T ss_pred EEecCH
Confidence 987554
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9e-16 Score=98.63 Aligned_cols=102 Identities=34% Similarity=0.626 Sum_probs=88.7
Q ss_pred EEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHH
Q 033218 23 ILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102 (125)
Q Consensus 23 ~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~ 102 (125)
.++|.|+..+.....+....-..+||+-|...++.+.|++.|.+||+|...+++++..+++++||+||.|-++++|+.||
T Consensus 42 e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 42 ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 35677766554443333444567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeeCCeEEEEEecCCCC
Q 033218 103 ESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 103 ~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
..++|..|+++.|+-.++..|.
T Consensus 122 ~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 122 QQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHhCCeeeccceeeccccccCc
Confidence 9999999999999999987663
No 37
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=2.4e-15 Score=97.29 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.++|||+|||+.+++++|+++|+.||.|..+.++.+.. .+++|||+|.+.++|+.|+. |+|..+.|+.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999988743 46899999999999999995 99999999999999875
No 38
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=7e-16 Score=97.27 Aligned_cols=78 Identities=36% Similarity=0.655 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.-++|||+||++.+..+.|++.|++||+|.+..++.++.+|+++||+||.|.+.+.|.+||+ --+-.|+|++..++++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchh
Confidence 45789999999999999999999999999999999999999999999999999999999997 2345678888777764
No 39
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=92.56 Aligned_cols=77 Identities=32% Similarity=0.590 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
-.+.|||+||+..+++.+|+.+|..||.+..+-+... ++|||||+|++.-+|+.|+..|+|..|.|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999988766654 57899999999999999999999999999999999976
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.8e-15 Score=95.98 Aligned_cols=83 Identities=28% Similarity=0.648 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.++-+||||.-|+.++++..|+..|..||.|+.+.++.+..+|+++|||||+|...-+...|.+..+|..|+|+.|.|-+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 033218 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 553
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=94.80 Aligned_cols=84 Identities=32% Similarity=0.561 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
++.+....|-|-||..-++.++|+.+|.+||.|-.+.|+++..+..++|||||.|....+|+.|+..|+|..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 033218 118 SLAQ 121 (125)
Q Consensus 118 ~~~~ 121 (125)
++++
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8875
No 42
>smart00362 RRM_2 RNA recognition motif.
Probab=99.63 E-value=8.6e-15 Score=77.75 Aligned_cols=72 Identities=40% Similarity=0.760 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
+|+|+|+|..++.++|+++|.++|.+..+.+..+. +.++++||++|.+.+.|+.|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888774 6788999999999999999999999999999988763
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=3.1e-15 Score=87.14 Aligned_cols=80 Identities=29% Similarity=0.535 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
..++.|||.++....++++|.+.|..||+|..+.+.++..+|..+||++|+|++..+|++|+..+||..+.|..|.|-|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988664
No 44
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=2.2e-14 Score=101.12 Aligned_cols=80 Identities=29% Similarity=0.400 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
...+|||+|||..+++++|+++|+.+|.|..+.++.+..++.++|+|||+|.+.++|.+|+. |+|..+.|..|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 46799999999999999999999999999999999998899999999999999999999996 89999999999998865
Q ss_pred C
Q 033218 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 3
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-15 Score=95.78 Aligned_cols=83 Identities=34% Similarity=0.588 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||++|-..+++..|...|=+||.|..++++.+..++++++|+||+|...++|.+|+.-+++..+.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 033218 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
|.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 864
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=3.7e-15 Score=90.77 Aligned_cols=82 Identities=35% Similarity=0.536 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.+.+.+|||+||+..++++.|.++|-+.|++..+.++++..++.++||||++|.+.++|+-|++.|+...+.|+.|++..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 66
No 47
>smart00360 RRM RNA recognition motif.
Probab=99.59 E-value=2.1e-14 Score=75.97 Aligned_cols=71 Identities=41% Similarity=0.783 Sum_probs=65.7
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 48 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
|+|||..+++++|+++|.+||.+..+.+..+..++.++++|||+|.+.++|..|+..+++..+.|..+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887778889999999999999999999999999999988763
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=6.3e-15 Score=102.02 Aligned_cols=80 Identities=36% Similarity=0.723 Sum_probs=77.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.+||+|+|+++++++|..+|+..|.|..++++.|+.+|+.+||+|++|.+.+.+..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999997643
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=1.8e-14 Score=99.62 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecH--HHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK--AEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~--~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....|||+||++.+++++|+..|..||.|..+.+++. +| +|||||+|.+. .+..+|+..|+|..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4578999999999999999999999999999999944 55 89999999976 689999999999999999999999
Q ss_pred cCC
Q 033218 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 876
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=1.5e-13 Score=73.29 Aligned_cols=74 Identities=43% Similarity=0.776 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+|+|+|||..+++++|+++|..+|.+..+.+..+..+ .+.++|+|+|.+.++|..|+..+++..+.|..+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999998877443 6789999999999999999999999999999998864
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.6e-16 Score=94.76 Aligned_cols=79 Identities=28% Similarity=0.693 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.-|||+|||+..|+-+|.-+|++||.|..+.++++..||+++||||+.|++--+...|+.-|+|..|.|+.|+|-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3467999999999999999999999999999999999999999999999999988888899999999999999999653
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=88.37 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|+|+||++.+++++|+++|+.||.|..+.++++. ...++|||+|.+.+.++.|+ .|+|..|.+..|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45899999999999999999999999999999999884 34579999999999999998 599999999999997643
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.4e-14 Score=87.71 Aligned_cols=79 Identities=20% Similarity=0.444 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.++.|||+|||.++.+.+|+++|.+||.|..+.+.... ....||||+|++.-+|+.||..-+|+.++|++|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 56889999999999999999999999999998774332 246799999999999999999999999999999999987
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.54 E-value=3.7e-14 Score=98.55 Aligned_cols=119 Identities=32% Similarity=0.603 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC-------C--CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCee
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-------P--LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~-------~--~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~ 71 (125)
|.+.+.+-.||. |.|..+.|.+|.|..+...+... . .-..+...+|++||...+++++++.+|..||.|.
T Consensus 228 f~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie 306 (549)
T KOG0147|consen 228 FCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE 306 (549)
T ss_pred EecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccce
Confidence 345566777786 99999999999998764332211 0 0112223389999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 72 GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 72 ~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.+.++..+|..+||+||+|.+.++|..|+.+|||+.+-|+.|+|...
T Consensus 307 ~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 307 NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 9999999889999999999999999999999999999999999998764
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=90.18 Aligned_cols=79 Identities=47% Similarity=0.799 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..+|||+|||.++++++|.++|..||.+..+.+..+..++..+|+|||.|.+.+++..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999853
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=6.1e-14 Score=95.29 Aligned_cols=84 Identities=32% Similarity=0.593 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe-e--CCeEEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE-L--EGRAMRV 117 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~-~--~g~~i~v 117 (125)
.+.-++||+-+|+.++|.+|+.+|++||.|.++.+++|+.++.++|||||.|.++++|.+++..||+.. + ..+.|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999999999999999999999999999999999964 4 3567888
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
+|++..+
T Consensus 112 k~Ad~E~ 118 (510)
T KOG0144|consen 112 KYADGER 118 (510)
T ss_pred cccchhh
Confidence 8877543
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.3e-14 Score=94.58 Aligned_cols=76 Identities=28% Similarity=0.649 Sum_probs=74.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
|.|||+.+.+.+.++.|+..|..||.|+.+.+.+++-+++++||+||+|+-++.|+.|++.+||..++|+.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999864
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.1e-13 Score=91.19 Aligned_cols=121 Identities=27% Similarity=0.474 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC---CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP---LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~---~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 77 (125)
|++.+.|++|++.+||..+.+++|.|.....+..... ......+.+++.+++.+.+...|...|..+|.+..+.++.
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~ 201 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMR 201 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEee
Confidence 7899999999999999999999999987665544322 2334567899999999999999999999999999999888
Q ss_pred cCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 78 DGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 78 ~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+ ..+++++|+|+.|.+.+.|..++..+++....+..+.|..+..
T Consensus 202 ~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 202 D-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred c-CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 8 5677999999999999999999999999999988888876654
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=8.9e-13 Score=67.34 Aligned_cols=56 Identities=32% Similarity=0.676 Sum_probs=49.7
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 60 l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
|.++|++||.|..+.+.... +++|||+|.+.++|+.|++.|||..+.|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999886552 578999999999999999999999999999999986
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=2.1e-12 Score=68.95 Aligned_cols=62 Identities=21% Similarity=0.464 Sum_probs=53.8
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 57 TESLTQAFQ----EYGNVVGAR-VLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 57 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
+++|+++|+ .||.+..+. ++.+..+ +.++|++||.|.+.++|..|+..|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 456777787 999999885 6666656 8899999999999999999999999999999998763
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=3e-12 Score=86.75 Aligned_cols=117 Identities=26% Similarity=0.368 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCC------------------------------CCCCCcEEEEcC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL------------------------------YAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~------------------------------~~~~~~~l~i~~ 50 (125)
|++..+|..|+..|+|.++.|++|+|.+++...-..+. .-+++.+++++|
T Consensus 342 msd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsn 421 (492)
T KOG1190|consen 342 MSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSN 421 (492)
T ss_pred ecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeecc
Confidence 57889999999999999999999999988543322211 113456899999
Q ss_pred CCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEecCC
Q 033218 51 LSWSVTTESLTQAFQEYGNV-VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQG 122 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~~~ 122 (125)
+|.++++++++..|..-|.. ....+. ++.+.++++.+.+.++|..++-.+|++.++ +..++|+|++.
T Consensus 422 ip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 422 IPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999998755 433332 334668999999999999999999999996 55999999875
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=2.4e-12 Score=91.98 Aligned_cols=121 Identities=22% Similarity=0.387 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC------------------------------CCCC-----------
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK------------------------------LPLY----------- 39 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~------------------------------~~~~----------- 39 (125)
|.++.+|+.|++.|....+...++.+.|+...... ...+
T Consensus 428 fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~ 507 (725)
T KOG0110|consen 428 FLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLAR 507 (725)
T ss_pred ecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchh
Confidence 56788999999999999999888888765110000 0000
Q ss_pred ----CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC---CceeEEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 40 ----AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG---RSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 40 ----~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
....+.||+.|++++++.+.+...|...|.|..+.|...+... .+.|||||+|.+.++|+.|++.|+|..+.|
T Consensus 508 ~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 508 VAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 0011349999999999999999999999999999887764321 134999999999999999999999999999
Q ss_pred eEEEEEecC
Q 033218 113 RAMRVSLAQ 121 (125)
Q Consensus 113 ~~i~v~~~~ 121 (125)
+.|.|+++.
T Consensus 588 H~l~lk~S~ 596 (725)
T KOG0110|consen 588 HKLELKISE 596 (725)
T ss_pred ceEEEEecc
Confidence 999999987
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.40 E-value=2.5e-12 Score=80.93 Aligned_cols=80 Identities=23% Similarity=0.524 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQ----AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
.+..+|||.||+..+..++|+. +|++||.|..+... .+.+.+|-|||.|.+.+.|..|++.|+|+.+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999988 99999999987665 5577899999999999999999999999999999999
Q ss_pred EEecCCC
Q 033218 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
++||..+
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9998865
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-12 Score=85.24 Aligned_cols=82 Identities=28% Similarity=0.470 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.++...|||=.|.+-++.++|.-+|+.||.|..+.++++..+|.+..||||+|++.+++++|.-.+++..|..++|+|-|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
++
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 76
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=2.4e-12 Score=83.80 Aligned_cols=72 Identities=33% Similarity=0.647 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
..+||+|||..+++.+|+.+|.+||+|.++.++.+ ||||..++...++.+++.||++++.|..|.|.-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999988755 8999999999999999999999999999999887765
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.4e-12 Score=84.20 Aligned_cols=87 Identities=24% Similarity=0.489 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
...+.+|.|||-.||.+..+.+|...|-.||.|...++..++.+..++.|+||.|++..+++.+|..+||+.|+=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
++.+||.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9988773
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.35 E-value=7.4e-12 Score=77.89 Aligned_cols=81 Identities=20% Similarity=0.385 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEY-GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
......+|+..+|..+.+.++...|.++ |.+.++++.+...||.++|||||+|++.+.|..|-..+|++-+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455678999999999999999999999 677888999999999999999999999999999999999999999999887
Q ss_pred ec
Q 033218 119 LA 120 (125)
Q Consensus 119 ~~ 120 (125)
+=
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 73
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=5.8e-11 Score=74.90 Aligned_cols=116 Identities=19% Similarity=0.406 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC--------------------------------------------
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-------------------------------------------- 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~-------------------------------------------- 36 (125)
|.+.+.|..|++.|+|..+.|+++++.|+.......
T Consensus 59 Fk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~ 138 (221)
T KOG4206|consen 59 FKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF 138 (221)
T ss_pred ecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc
Confidence 678899999999999999999999999873311100
Q ss_pred -CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeE
Q 033218 37 -PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRA 114 (125)
Q Consensus 37 -~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~ 114 (125)
....++...+++.|+|..++.+.+..+|.+|..-..++++.. ..+.+||+|.+...+..+...+++..|. ...
T Consensus 139 ~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~ 213 (221)
T KOG4206|consen 139 LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNT 213 (221)
T ss_pred cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCce
Confidence 011345678999999999999999999999988888887655 3578999999999999999999999987 888
Q ss_pred EEEEecC
Q 033218 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
+.+.+++
T Consensus 214 m~i~~a~ 220 (221)
T KOG4206|consen 214 MQITFAK 220 (221)
T ss_pred EEecccC
Confidence 8888875
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=4.5e-11 Score=79.55 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh-CCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l-~~~~~~g~~i~v~ 118 (125)
+....+|||++|...+++.+|++.|.+||+|..+.+... +++|||+|.+++.|+.|...+ +...|+|.+|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345689999999999999999999999999999887644 458999999999999988755 4466899999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 98874
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.27 E-value=5.1e-11 Score=81.69 Aligned_cols=78 Identities=31% Similarity=0.522 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
...+.+||+|+|+++...+|++++.+ -|+|.++.+..+ .+|+++++|.|+|.+++.+++|++.|+.+.+.|+.|.|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999999999999999976 589999999988 7899999999999999999999999999999999999865
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=82.18 Aligned_cols=121 Identities=22% Similarity=0.392 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCC-CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLY-AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~-~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~ 79 (125)
|++++....++. ..-..|.|+.|.+..+-++....... ......+||++||.+++++++++.|.+||.|..+.++++.
T Consensus 55 f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 55 FATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK 133 (311)
T ss_pred cCCCcchheeec-ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc
Confidence 445555555555 44566788888877665554433222 2356789999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+..+++|+||.|.+.+...+++. .+...+.++.+.|..+.|+
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred cccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 999999999999999998888765 4667889999999888765
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=79.33 Aligned_cols=98 Identities=30% Similarity=0.508 Sum_probs=79.5
Q ss_pred CeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHH
Q 033218 21 GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100 (125)
Q Consensus 21 ~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 100 (125)
.++|.|+.+.... ....+++|||+.|...-+|++++.+|..||.+.++.+.+. ..|.++|++||.|.+-.+|+.
T Consensus 2 nrpiqvkpadses-----rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 2 NRPIQVKPADSES-----RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCCcccccccccc-----CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHH
Confidence 3556665443221 2236788999999999999999999999999999998888 678999999999999999999
Q ss_pred HHHHhCCCe-eC--CeEEEEEecCCCC
Q 033218 101 ALESLNGVE-LE--GRAMRVSLAQGRR 124 (125)
Q Consensus 101 ~~~~l~~~~-~~--g~~i~v~~~~~~~ 124 (125)
+|..|||-. +- ...|.|.|+...+
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchH
Confidence 999999953 32 5678889887543
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=1.3e-10 Score=84.22 Aligned_cols=75 Identities=25% Similarity=0.540 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
++||+|++||..+++.+|..+|+.||.|..+.+.- ++++|||.+..+.+|.+|+..|.++.+.+..|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 47999999999999999999999999999987753 478999999999999999999999999999999999765
Q ss_pred C
Q 033218 123 R 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 74
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=6e-10 Score=68.62 Aligned_cols=103 Identities=28% Similarity=0.405 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC---------------------CCCCCCCcEEEEcCCCCCCCHHH
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---------------------PLYAETDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~---------------------~~~~~~~~~l~i~~lp~~~~~~~ 59 (125)
|+++.||+.||..-+|+.+.|+.|+|+++..-.... ++--.+...|.|++||.+-+..+
T Consensus 52 FEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQD 131 (241)
T KOG0105|consen 52 FEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQD 131 (241)
T ss_pred ecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHH
Confidence 788999999999999999999999999975432211 11112346899999999999999
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 60 l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
|++...+-|.++...+.++ +++.|+|...++.+-|++.|+...+
T Consensus 132 LKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 132 LKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred HHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 9999999999998887766 3689999999999999999988655
No 75
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=4.9e-10 Score=77.65 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC---C---CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE-E
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---P---LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-A 73 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~---~---~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~-~ 73 (125)
|++.||+.+|++ .+...+..+-|.|.-+...+... + .....+..|-+.+||+++++++|.++|+..-.+.. +
T Consensus 56 ~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi 134 (510)
T KOG4211|consen 56 FTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGI 134 (510)
T ss_pred eechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccce
Confidence 678999999999 88888999999998765443221 1 11135678999999999999999999998854433 4
Q ss_pred EEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 74 ~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.++.+ ..+.+.+.|||.|++.+.|+.|+.. |...|+.+.|.|-.
T Consensus 135 ~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 135 LLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred eeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45555 5677899999999999999999874 66677777777754
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.16 E-value=4.7e-10 Score=74.77 Aligned_cols=81 Identities=22% Similarity=0.518 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
+...+.|||+|||.++|.+++.++|+.||-|.+ +++.++ ..|..+|=|++.|-..++...|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445677999999999999999999999997654 677777 56999999999999999999999999999999
Q ss_pred CeEEEEEecC
Q 033218 112 GRAMRVSLAQ 121 (125)
Q Consensus 112 g~~i~v~~~~ 121 (125)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998765
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.13 E-value=3.5e-09 Score=72.18 Aligned_cols=73 Identities=32% Similarity=0.531 Sum_probs=64.8
Q ss_pred cEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 44 FKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 44 ~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..|-++||.. .+|.+.|..+|+.||.|.++++.+.+. .-|+|.|.+...|+.|+..|+|..+.|+.|+|.+++
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5566676655 689999999999999999999988843 469999999999999999999999999999999986
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=3e-10 Score=77.97 Aligned_cols=76 Identities=30% Similarity=0.552 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....|+|+|.|||.++|...|++-|..||.+.+..+. ..|+.++ .|.|.++++|++||..+++..++|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3467899999999999999999999999999987773 4466665 8999999999999999999999999999987
Q ss_pred c
Q 033218 120 A 120 (125)
Q Consensus 120 ~ 120 (125)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.09 E-value=1.1e-09 Score=70.82 Aligned_cols=80 Identities=33% Similarity=0.588 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..+.|+|.|||..+.+++|+++|..||.+..+.+-++ ..|.+.|.|-|.|...++|.++++.+++..++|..+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4478999999999999999999999998888888877 678899999999999999999999999999999998887755
Q ss_pred C
Q 033218 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.3e-10 Score=80.44 Aligned_cols=121 Identities=23% Similarity=0.454 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC------------------CCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK------------------LPLYAETDFKLFVGNLSWSVTTESLTQ 62 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~------------------~~~~~~~~~~l~i~~lp~~~~~~~l~~ 62 (125)
|.+.++|..|+. ++++.+.|.++++......... ........+.++|++||...++..+.+
T Consensus 230 ~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~E 308 (500)
T KOG0120|consen 230 FRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKE 308 (500)
T ss_pred ecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHH
Confidence 567788888888 9999999998887643221111 112223457899999999999999999
Q ss_pred HHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 63 AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 63 ~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
++..||.+..+.++.+..+|.+++|||.+|.+...+..|+..|+|..+++..|.++.+-.
T Consensus 309 ll~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 309 LLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred HHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 999999999999999988899999999999999999999999999999999999987643
No 81
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.08 E-value=3.6e-09 Score=59.45 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC----CeEEEE
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE----GRAMRV 117 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~----g~~i~v 117 (125)
++|.|.|+|...+.++|.+++... |..-.+.++.+..++...|||||.|.+.+.+.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998764 56677899999999999999999999999999999999997664 334555
Q ss_pred EecC
Q 033218 118 SLAQ 121 (125)
Q Consensus 118 ~~~~ 121 (125)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=68.41 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=51.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
.++||-||...+++++|+.+|+.|.....+++- . .+ ...++|++|+..+.|..|+..|+|..+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~-~~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR-A-RG--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-c-CC--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 489999999999999999999999655444432 1 22 2347999999999999999999997663
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=4.4e-10 Score=71.34 Aligned_cols=111 Identities=30% Similarity=0.482 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC---------------CCCCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK---------------LPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~---------------~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|.+..+|+.|+-.+|+..+.+..+.+.|+...... ...+.-..+.+.+.+++..+...+|.+.|.
T Consensus 42 fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~ 121 (216)
T KOG0106|consen 42 FEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR 121 (216)
T ss_pred cCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc
Confidence 67889999999999999999988999987642110 112233457888999999999999999999
Q ss_pred cCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 66 ~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.+|++..... ..+++||+|...+++.+|+..|++..+.+++|.+..
T Consensus 122 ~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 122 PAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9998843222 456899999999999999999999999999998844
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.03 E-value=2.1e-08 Score=67.87 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 43 DFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++.++|.+|... ++-+.|..+|-.||.|+++++++.+ .|-|.|++.+....++++..|++..+-|.+|.+++++
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 467889999885 5778899999999999999998773 4679999999999999999999999999999999887
Q ss_pred C
Q 033218 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
.
T Consensus 362 Q 362 (494)
T KOG1456|consen 362 Q 362 (494)
T ss_pred c
Confidence 4
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.01 E-value=9.3e-09 Score=65.18 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC-CCCceeEEEEEeecHHHHHHHHHHhCCCeeC---CeEEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALESLNGVELE---GRAMRV 117 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~---g~~i~v 117 (125)
.-++|||++||.++...+|..+|+.|...+...+..... .+..+.+||+.|.+.+.|.++++.|||..++ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 458999999999999999999999996555544433322 2334578999999999999999999999885 788999
Q ss_pred EecCC
Q 033218 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
.+++.
T Consensus 113 ElAKS 117 (284)
T KOG1457|consen 113 ELAKS 117 (284)
T ss_pred eehhc
Confidence 88763
No 86
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.97 E-value=2.4e-08 Score=66.86 Aligned_cols=116 Identities=24% Similarity=0.329 Sum_probs=85.7
Q ss_pred CHHHHHHHHHhcCCCccCCeEEEEeccCC----------C-C--C---------------CC-----CCCCCCCcEEEEc
Q 033218 3 TVEDCNAVIENLDGREYLGRILRVNFSDK----------P-K--P---------------KL-----PLYAETDFKLFVG 49 (125)
Q Consensus 3 ~~~~a~~a~~~~~~~~~~~~~i~v~~~~~----------~-~--~---------------~~-----~~~~~~~~~l~i~ 49 (125)
-.+++..|+..|++..+.|+.|+|+.+.- + + . +. +......++|.+.
T Consensus 192 K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~k 271 (382)
T KOG1548|consen 192 KRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILK 271 (382)
T ss_pred cccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEee
Confidence 35789999999999999999999986511 0 0 0 00 1112234678887
Q ss_pred CCCC----CCC-------HHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 50 NLSW----SVT-------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 50 ~lp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
|+=. ..+ .++|.+-+.+||.+..+.+.- ..+.|.+-|.|.+.++|..||+.|+|..+.|+.|..+
T Consensus 272 n~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 272 NMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred ecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 7632 112 256777889999999876532 2367889999999999999999999999999999988
Q ss_pred ecCC
Q 033218 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
....
T Consensus 348 i~DG 351 (382)
T KOG1548|consen 348 IWDG 351 (382)
T ss_pred EeCC
Confidence 7543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.96 E-value=3.2e-09 Score=68.30 Aligned_cols=107 Identities=26% Similarity=0.533 Sum_probs=85.7
Q ss_pred cCCCccCCeEEEEeccCC-CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEe
Q 033218 14 LDGREYLGRILRVNFSDK-PKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92 (125)
Q Consensus 14 ~~~~~~~~~~i~v~~~~~-~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f 92 (125)
-+++.+.-.+++..-... .+......+..+..||++-|..+++.+.|-..|.+|-.....++++++.+|+++||+||.|
T Consensus 160 ~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf 239 (290)
T KOG0226|consen 160 KEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSF 239 (290)
T ss_pred cccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeee
Confidence 344555555555443221 2223345566788999999999999999999999998777788999999999999999999
Q ss_pred ecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 93 STKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 93 ~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+..++.+|++.++|.+++++.|+++-+
T Consensus 240 ~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 240 RDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cCHHHHHHHHHhhcccccccchhHhhhh
Confidence 9999999999999999999998877543
No 88
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=5.2e-09 Score=74.28 Aligned_cols=79 Identities=39% Similarity=0.598 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+..|.|++|...+.-.+|+.+|++||.|...+++.+..+.-.+.|+||.+.+..+|.+||..||...+.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4689999999988889999999999999999999888888889999999999999999999999999999999998765
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=3e-09 Score=71.34 Aligned_cols=81 Identities=38% Similarity=0.693 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++++|++|+++++++.|++.|.+||.+..+.+.+++.++.+++|+||.|.+.+...+++. ...+.|.|+.|.+.-+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999998888777765 24466777777666554
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 43
No 90
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.86 E-value=1.8e-08 Score=72.88 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
...+..+.+|++|+++++++..|...|+.||++..+++.+.... ...+.++||.|.++-++++|++.|+|..+.++.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 34556688999999999999999999999999999988776432 234678999999999999999999999999999
Q ss_pred EEEEecC
Q 033218 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9998874
No 91
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-08 Score=70.30 Aligned_cols=78 Identities=24% Similarity=0.495 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.+|||.|||.+++..+|+++|..||.|....|......++..+||||+|.+.+.++.++.. +-..++++++.|.-.++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4699999999999999999999999999887655443445559999999999999999985 47788999999976554
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=2.7e-08 Score=70.21 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC-------------------CCCCCCcEEEEcCCCC--CC-CH-
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-------------------LYAETDFKLFVGNLSW--SV-TT- 57 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~-------------------~~~~~~~~l~i~~lp~--~~-~~- 57 (125)
|.++...+.|+..+||+.++++++.|..+-....... ....+...+++.|+=. +. .+
T Consensus 338 y~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~ 417 (500)
T KOG0120|consen 338 YCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDE 417 (500)
T ss_pred eeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchH
Confidence 4566778899999999999999999987633221111 1112233344433211 00 11
Q ss_pred ------HHHHHHHhcCCCeeEEEEeecCCCC---CceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 58 ------ESLTQAFQEYGNVVGARVLYDGESG---RSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 58 ------~~l~~~f~~~g~i~~~~~~~~~~~~---~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++.-+++||.+..+.++++...+ -..|-.||+|.+.+++++|...|+|..+.|+.+...|-.
T Consensus 418 EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 418 EYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 5677788999999999888772222 234456999999999999999999999999999988843
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.82 E-value=1.3e-07 Score=64.22 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC--------------------------------CCCCCCCCCcEEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP--------------------------------KLPLYAETDFKLFV 48 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~--------------------------------~~~~~~~~~~~l~i 48 (125)
|.+....++|+..||+..+.|.+|.+..++..-- ....-..++++|+.
T Consensus 332 mgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHf 411 (494)
T KOG1456|consen 332 MGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHF 411 (494)
T ss_pred cCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEE
Confidence 4677889999999999999999999976533111 11123356789999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe------EEEEEecC
Q 033218 49 GNLSWSVTTESLTQAFQEYGNV-VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR------AMRVSLAQ 121 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~------~i~v~~~~ 121 (125)
-|.|..++|+.+..+|..-+.. ..+++.-. . ......+.++|++.++|..++..+|.+.|.+. .++++|+.
T Consensus 412 fNaP~~vtEe~l~~i~nek~v~~~svkvFp~-k-serSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 412 FNAPLGVTEEQLIGICNEKDVPPTSVKVFPL-K-SERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred ecCCCccCHHHHHHHhhhcCCCcceEEeecc-c-ccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 9999999999999999887533 23333222 2 22344589999999999999999999988632 47788877
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 490 s~ 491 (494)
T KOG1456|consen 490 SK 491 (494)
T ss_pred cc
Confidence 65
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.2e-09 Score=73.20 Aligned_cols=70 Identities=31% Similarity=0.452 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
...+|.|.|||.++++++|+.+|+.||+|..++.-. ..++.+||+|-+.-+|++|++.|++..+.|..|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 457899999999999999999999999999876433 3678899999999999999999999999988877
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.69 E-value=4.6e-08 Score=52.94 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=46.2
Q ss_pred cEEEEcCCCCCCCHHHHHHH----HhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 44 FKLFVGNLSWSVTTESLTQA----FQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~----f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
..|+|.|||.+.+...++.- ..-+| .+..+. .+.|++.|.+.+.|.+|.+.++|..+-|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999998887666544 44665 555431 2469999999999999999999999999999999
Q ss_pred ecCC
Q 033218 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.65 E-value=3e-07 Score=64.22 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
......|-+.+||+++|+++|.++|+-+ .|..+.++ ..+|+..|-|+|+|.+.++++.|++ .+...+..+.|.|--
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3456678889999999999999999999 46665554 4468899999999999999999998 477778888888865
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 53
No 97
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.65 E-value=3.1e-07 Score=64.83 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 58 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 58 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
+++.+.+.++|.+..+.+... +-|+.||.|.+.+.|..|++.|||+.+.|+.|.+.|-
T Consensus 468 edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 677788899999999887644 2378999999999999999999999999999999884
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.4e-08 Score=61.97 Aligned_cols=71 Identities=27% Similarity=0.595 Sum_probs=63.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
..+||+++|..+.+.++..+|..||++..+.+. .+|+||+|.+..+|..++..|++..+.+-.+.+.+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 358999999999999999999999999887653 45789999999999999999999999988888888774
No 99
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=6e-08 Score=65.94 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC-------------------CCC-------CCCCCCCCCcEEEEcCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK-------------------PKP-------KLPLYAETDFKLFVGNLSWS 54 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~-------------------~~~-------~~~~~~~~~~~l~i~~lp~~ 54 (125)
|+..++|+.|+. .|...|+.+.|.+..+.. ... .......+...|-+.+||.+
T Consensus 213 fa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 213 FACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred ecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 567888998888 555555555555543200 000 00112223567889999999
Q ss_pred CCHHHHHHHHhcCCC-eeE--EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 55 VTTESLTQAFQEYGN-VVG--ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 55 ~~~~~l~~~f~~~g~-i~~--~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|.++|..|.. |.. +.++.+ ..|.+.|-|||+|.+.+.|.+|....|+....++.|.|-.+
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 999999999999963 333 677777 77889999999999999999999988887777787877554
No 100
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=2.1e-07 Score=60.33 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.....++++|+.+.++.+++...|+.||.+..+.++.+...+.+++++|++|.+.+..+.++. |++-.+.|..+.+.+-
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345789999999999999999999999999999899998888899999999999999999999 9999999998888764
Q ss_pred C
Q 033218 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
+
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.45 E-value=1.1e-06 Score=59.07 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCCCHHH------HHHHHhcCCCeeEEEEeecCCCCC-cee--EEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 42 TDFKLFVGNLSWSVTTES------LTQAFQEYGNVVGARVLYDGESGR-SRG--YGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~~~-~~~--~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
...-+||.+||+.+..++ -.++|++||.|..+.+.+.-.+.. ..+ ..+|.|.+.++|.++|..++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 446799999999876655 267899999999886654421111 111 24999999999999999999999999
Q ss_pred eEEEEEecCC
Q 033218 113 RAMRVSLAQG 122 (125)
Q Consensus 113 ~~i~v~~~~~ 122 (125)
+.|++.|...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999998654
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=1.1e-07 Score=60.26 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
++.+.+|||.|+-..++++-|.++|-+-|.|..+.|+.. ..++.+ ||||.|.+.....-|++.++|..+.+..+.+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 345679999999999999999999999999999988877 556666 999999999999999999999999888887776
Q ss_pred c
Q 033218 120 A 120 (125)
Q Consensus 120 ~ 120 (125)
.
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 3
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.36 E-value=1.7e-06 Score=49.58 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC-----CeeCCeEEEEE
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG-----VELEGRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~-----~~~~g~~i~v~ 118 (125)
+.|++.+++..++.++|+..|+.+|.|.++.+... ...|+|.|.+.+.|+.++..+.. ..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999998877544 23699999999999999986643 34455544443
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.26 E-value=6.6e-07 Score=57.87 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC--------CC----ceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES--------GR----SRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~----~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
....||++++|+.+...-|+++|+.||.|-++.+.....+ |. ...-|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999887655444 12 23347899999999999999999999
Q ss_pred eCCeE
Q 033218 110 LEGRA 114 (125)
Q Consensus 110 ~~g~~ 114 (125)
|+|.+
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.22 E-value=3.5e-06 Score=56.39 Aligned_cols=122 Identities=23% Similarity=0.364 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC-----CCCCCCCCCcEEE-EcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-----KLPLYAETDFKLF-VGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~l~-i~~lp~~~~~~~l~~~f~~~g~i~~~~ 74 (125)
|+..+.+..|+.....+...+..+.......... ..........+++ +++++..+++++|+..|..+|.+..++
T Consensus 137 f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r 216 (285)
T KOG4210|consen 137 FAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVR 216 (285)
T ss_pred cccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeec
Confidence 5667777778774333455544433332211111 1111223334455 999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 75 ~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++....++...+++++.|.....+..++.. +...+.+..+.+.+..+.
T Consensus 217 ~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 217 LPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 999999999999999999999998888876 778888998888887654
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=7.8e-06 Score=58.37 Aligned_cols=77 Identities=30% Similarity=0.438 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCCC------HHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeE
Q 033218 42 TDFKLFVGNLSWSVT------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRA 114 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~ 114 (125)
-+..|+|.|+|---. ...|.++|+++|++..+.++.+..+| .+|+.|++|.+..+|+.|++.|||..+. ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 356788999987332 24567889999999999999885555 8999999999999999999999999986 666
Q ss_pred EEEEe
Q 033218 115 MRVSL 119 (125)
Q Consensus 115 i~v~~ 119 (125)
..+..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66643
No 107
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=58.37 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 113 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~ 113 (125)
...++||.++|..+++.++..+|.++|.|.. +.+.++..|+..++-|.|.|.+...|+.|+.-+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3468999999999999999999999997753 56778888999999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 033218 114 AMRVSLAQGR 123 (125)
Q Consensus 114 ~i~v~~~~~~ 123 (125)
.|+|.++..+
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999887654
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.19 E-value=2.1e-06 Score=43.46 Aligned_cols=29 Identities=41% Similarity=0.831 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
|.+.++|+.|+..|||..+.|++|+|.|+
T Consensus 28 f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 28 FASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999999999999985
No 109
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=1e-05 Score=52.52 Aligned_cols=90 Identities=29% Similarity=0.390 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC
Q 033218 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 83 (125)
..-|..|-.+|++....++.++|.|+-. ..|||.||+..++.+.+...|+.||.+..-.+..+ ..++
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k 70 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGK 70 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccc
Confidence 3457788889999999999999999764 26999999999999999999999999987665555 5677
Q ss_pred ceeEEEEEeecHHHHHHHHHHhC
Q 033218 84 SRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 84 ~~~~~fv~f~~~~~a~~~~~~l~ 106 (125)
+.+-++|.|.+...+..|...+.
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhc
Confidence 88889999999999999888763
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.03 E-value=3.6e-05 Score=56.43 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=64.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVV-GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+.|-+.|+|++++-++|.++|..|-.+- .+.+-+. ..|...|-|.|.|++.++|.+|..-|++..|.++.+.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788899999999999999999995443 3445555 7799999999999999999999999999999999887753
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=3.2e-06 Score=62.64 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
...++|+|.|+..|.++++.++...|.+...+++.. ..|+++|-+++.|.+..++.+++...+...+.-..+.++.+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 467999999999999999999999999988887777 6799999999999999999999887777766655566655443
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.87 E-value=0.00012 Score=41.47 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe-
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-------ESGRSRGYGFVCYSTKAEMETALESLNGVELEGR- 113 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~- 113 (125)
..+-|.|-|.|.. ....+.+.|++||.|.+..-.... .......|-.+.|.++.+|.+|+.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3456888899998 446688899999998765300000 0112345889999999999999984 88888764
Q ss_pred EEEEEecC
Q 033218 114 AMRVSLAQ 121 (125)
Q Consensus 114 ~i~v~~~~ 121 (125)
.+.|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 56677753
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=7.1e-05 Score=37.49 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=40.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHH
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~ 102 (125)
+.|-|.|.|.+..+. +...|..||+|....+.. ...+.++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467889999877755 555888899999887651 2457999999999999874
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.87 E-value=0.00011 Score=48.06 Aligned_cols=79 Identities=30% Similarity=0.438 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC----CCCCCC---------------CCCCCCCcEEEEcCCCCCCCHHHHH
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD----KPKPKL---------------PLYAETDFKLFVGNLSWSVTTESLT 61 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~----~~~~~~---------------~~~~~~~~~l~i~~lp~~~~~~~l~ 61 (125)
|.+.++|..|+..++|..+.|++|.|.+.. ...... .........+++.+++..++...+.
T Consensus 164 f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
T COG0724 164 FESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELA 243 (306)
T ss_pred ecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHH
Confidence 678999999999999999999999999843 222221 1122345789999999999999999
Q ss_pred HHHhcCCCeeEEEEeecC
Q 033218 62 QAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 62 ~~f~~~g~i~~~~~~~~~ 79 (125)
..|..+|.+....+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 244 DLFKSRGDIVRASLPPSK 261 (306)
T ss_pred HhccccccceeeeccCCC
Confidence 999999998766655443
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.75 E-value=0.00066 Score=46.88 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC--------CCCCCCC---CcEEEEcCCCCCCCHHHHHHHHhcC--
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK--------LPLYAET---DFKLFVGNLSWSVTTESLTQAFQEY-- 67 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~--------~~~~~~~---~~~l~i~~lp~~~~~~~l~~~f~~~-- 67 (125)
|.++|.-+-|++ -+...+.++.|.|..+...+-. ......+ .-.|-+.+||++++..++..+|..-
T Consensus 109 f~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 109 FVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred ecCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 445555566666 5556667777887655433211 1111111 2456678999999999999999632
Q ss_pred --CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHH
Q 033218 68 --GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104 (125)
Q Consensus 68 --g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~ 104 (125)
|....+.++.. .+|+..|-||+.|...++|+.|+.+
T Consensus 188 v~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 188 VTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH
Confidence 24445556655 5688899999999999999999874
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.61 E-value=0.00067 Score=36.94 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=42.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~ 107 (125)
+.+++..|++ +|..+-..+|.++|+.||.|. +..+-+ .-|||...+++.+..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4456777777 999999999999999999874 333322 2599999999999999988764
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00042 Score=49.28 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHH
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~ 103 (125)
..++..||||++||.-++-++|-.++. -||.|..+-|..|++-..++|-|-|.|.+-..-.+||.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 346779999999999999999999998 69999999999887778899999999999888888886
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.51 E-value=0.0019 Score=38.97 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=50.5
Q ss_pred CCCCcEEEEcCCC-----C-CCCH---HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 40 AETDFKLFVGNLS-----W-SVTT---ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 40 ~~~~~~l~i~~lp-----~-~~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
.+++.+|.|+-.. . .+.+ .+|.+.|..||.+.-++++-+ .-+|.|.+.+.|-+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 4556667666444 1 2222 367788889998887776643 36899999999999987 799999
Q ss_pred CCeEEEEEecCC
Q 033218 111 EGRAMRVSLAQG 122 (125)
Q Consensus 111 ~g~~i~v~~~~~ 122 (125)
.|+.|+|++..|
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998554
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.00015 Score=49.31 Aligned_cols=72 Identities=25% Similarity=0.536 Sum_probs=61.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
...+||+||-+.+++++|.+.+..-| ++..+++.....+|.++|||++...+.....+.+..|-...|.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 36799999999999999999998877 6677788888889999999999999888888888888877776654
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.46 E-value=0.00038 Score=51.37 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC----------------------------------CCCCCCCCCCcEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK----------------------------------PKLPLYAETDFKL 46 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~----------------------------------~~~~~~~~~~~~l 46 (125)
|...+++++|+. -|...+-++.+.+....... .....+......|
T Consensus 359 f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~l 437 (944)
T KOG4307|consen 359 FTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGAL 437 (944)
T ss_pred ecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceE
Confidence 567788999988 55555666666664321000 0001122234789
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 47 FVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 47 ~i~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
||..||..+++..+.++|.....++. +.+.+. .++..++.|||.|....++..|..--+.++++.+.|+|..
T Consensus 438 yv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 438 YVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred EeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 99999999999999999998877776 555555 6678889999999987777777665566777888888864
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=97.46 E-value=0.00018 Score=38.10 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRV 26 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v 26 (125)
|.+.++|.+|+..|||..+.|+.|++
T Consensus 44 f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 44 FERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 68999999999999999999999876
No 122
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.45 E-value=0.00031 Score=42.57 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|++|++.||+..|.|++|+|.++..+.
T Consensus 83 F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 83 FNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 789999999999999999999999999986543
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.40 E-value=0.00021 Score=53.77 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC--CeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE--GRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~--g~~i~v 117 (125)
....+.+.+++++..+....+...|..||.|..+.+- . ...|+++.|++...++.++..+.|..++ .+.++|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----H--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----c--CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 3456789999999999999999999999998875442 1 2458999999999999999999999997 456888
Q ss_pred EecCC
Q 033218 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
.|+.+
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 77764
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.37 E-value=0.0013 Score=43.91 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCceeE-EEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 58 ESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 58 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
+++..-+.+||.+..+.+...+........ .||+|...++|.+|+--|||..++|+.++.+|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 577888999999988876665444333332 599999999999999999999999999998874
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=8.4e-06 Score=60.51 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 113 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~ 113 (125)
.++|++||+..+.++++...|..+|.+..+++.-+...+..+|.|++.|...+.+.+++...++..++..
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI 737 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence 6789999999999999999999999888877766667788999999999999999999987666555433
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.23 E-value=0.0005 Score=49.81 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=60.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee---CCeE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGRA 114 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~---~g~~ 114 (125)
....+..|||.||=.-+|.-.|+.++.. .|.|... ++ + +.+..|||.|.+.++|......|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999995 5566554 21 1 2456799999999999999999999654 4667
Q ss_pred EEEEecC
Q 033218 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
|.+-|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8887754
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.003 Score=45.09 Aligned_cols=65 Identities=22% Similarity=0.486 Sum_probs=46.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec---CCCCCcee---EEEEEeecHHHHHHHHHH
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD---GESGRSRG---YGFVCYSTKAEMETALES 104 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~~~---~~fv~f~~~~~a~~~~~~ 104 (125)
...-++.|||++||.+++|+.|...|..||.+. +..+.. ..-..++| |+|+.|+.......-+..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 344568999999999999999999999999754 222210 01122455 999999987777665553
No 128
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.06 E-value=0.00062 Score=35.41 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILR 25 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~ 25 (125)
|.+.++|++|++.++|..+.|+.|+
T Consensus 46 F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 46 FESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EcCHHHHHHHHHHcCCCEECccCcC
Confidence 7899999999999999999999885
No 129
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.03 E-value=0.00088 Score=46.78 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec---CCCCC----------ceeEEEEEeecHHHHHHHHHHhCC
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD---GESGR----------SRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~----------~~~~~fv~f~~~~~a~~~~~~l~~ 107 (125)
.++++|.+-|||.+-.-+-|.++|+.+|.|..+++... +.+.. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999888999999999999999987654 22211 145689999999999999988854
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.93 E-value=0.00053 Score=44.74 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=48.6
Q ss_pred HHHHHHHh-cCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 58 ESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 58 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++...+. +||+|+.+.+-.. ..-...|-++|.|...++|++|+..|++..+.|..|.+.++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999988754333 333356678999999999999999999999999999988753
No 131
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0013 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|+++.||..|+..|||..|.|..|+|+++.....
T Consensus 54 Fed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 54 FEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred ccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 7899999999999999999999999999876544
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.70 E-value=0.027 Score=29.04 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEY---GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l 105 (125)
....|+|.|+.. ++.++++.+|..| .....+.++-+. .|-+.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345799999854 7888999999998 134456666552 3789999999999998754
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.61 E-value=0.00042 Score=46.82 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=60.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHH---HHHHhcCCCeeEEEEeecC----CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 40 AETDFKLFVGNLSWSVTTESL---TQAFQEYGNVVGARVLYDG----ESGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l---~~~f~~~g~i~~~~~~~~~----~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
......+|+.+||.....+.+ ...|++||.|..+.+..+. ..+. ..-++|.|...++|..+|...+|....|
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhh
Confidence 344567888899987655544 4567888888888776653 1111 2227999999999999999999999988
Q ss_pred eEEEEEecCCC
Q 033218 113 RAMRVSLAQGR 123 (125)
Q Consensus 113 ~~i~v~~~~~~ 123 (125)
+.+++.+...+
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 88877776543
No 134
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.55 E-value=0.0016 Score=38.79 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|++.++|+.|+.++||..+.|++|.|.|.--+
T Consensus 121 Yet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 121 YETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred hHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 57889999999999999999999999986433
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.51 E-value=0.0093 Score=41.49 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=57.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE---SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..|.|.||.++++.+.++.+|.-.|.|..+.+.-... -......|||.|.+...+..|. .|.+..+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4789999999999999999999999999886643211 1223557999999988888775 4777777777666643
No 136
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0028 Score=40.76 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|...|||..||..||+..+.|+.|+|+++.+.+-.
T Consensus 59 fe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 59 FEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred eeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence 56679999999999999999999999999876543
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.43 E-value=0.00012 Score=51.02 Aligned_cols=107 Identities=26% Similarity=0.343 Sum_probs=81.7
Q ss_pred CHHHHHHHHHhcCC-CccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC
Q 033218 3 TVEDCNAVIENLDG-REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 3 ~~~~a~~a~~~~~~-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 81 (125)
+..-|.+|++.++| ..+.|+++.+.++-+++. .++.+-|.|+|.....+.+..++..||.+..+..+.. .+
T Consensus 46 dq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt-~~ 117 (584)
T KOG2193|consen 46 DQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT-DS 117 (584)
T ss_pred chhhhhhhHHhhchhhhhcCceeeccchhhHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc-ch
Confidence 45678889999999 567899888887655432 3456889999999999999999999999887644322 11
Q ss_pred CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 82 ~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
-.-..-+.|...+.++.++..|+|..+.+..+.+.|
T Consensus 118 --etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 118 --ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 111224577889999999999999999888888776
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.36 E-value=0.0047 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.+.|++|.+.|+|..+.|.+|.|.|....
T Consensus 46 F~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 46 FPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp ESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred eCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 78999999999999999999999999987544
No 139
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.35 E-value=0.0067 Score=31.27 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEec
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 28 (125)
|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 47 f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 47 FEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 6789999999999999999999998864
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.027 Score=40.99 Aligned_cols=69 Identities=9% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQE--YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~v 117 (125)
..|.|.|..||..+-.++++.+|.. +..+..+.+.... + =||.|++..+|+.|.+.|.. ..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4478888999999999999999976 5566666665442 1 38999999999999987765 3456666544
No 141
>smart00362 RRM_2 RNA recognition motif.
Probab=96.29 E-value=0.0067 Score=31.09 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 27 (125)
|.+.++|+.|+..+++..+.|+++.|.
T Consensus 46 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 46 FESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred eCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 678999999999999999999988763
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.29 E-value=0.0057 Score=42.98 Aligned_cols=74 Identities=31% Similarity=0.440 Sum_probs=56.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCC-eeCCeEEEEEecCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV-ELEGRAMRVSLAQG 122 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~-~~~g~~i~v~~~~~ 122 (125)
..+|++||.+..+.+++..+|...-....-.+... .||+|+.+.+...|.++++.+++. .+.|.++.+.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35899999999999999999976522111122222 468999999999999999999984 57888888877655
Q ss_pred C
Q 033218 123 R 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 143
>smart00360 RRM RNA recognition motif.
Probab=96.27 E-value=0.0068 Score=30.91 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 27 (125)
|.+.++|..|+..+++..+.|+.+.|.
T Consensus 45 f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 45 FESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred eCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 678999999999999999999988763
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.21 E-value=0.057 Score=38.39 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
+.++..|+|-.+|..++-.++-.++..+- .|..++++++ ..+. +=..+|.|.+-.+|......+||..+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd-~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD-GMPN-RYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec-CCCc-eEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33488999999999999999999998764 7788999986 3333 345799999999999999999997654
No 145
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=96.20 E-value=0.0051 Score=41.75 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|++++||++|-.+|||..+.||+|.|+.+..+
T Consensus 143 men~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 143 MENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 68999999999999999999999999987554
No 146
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.16 E-value=0.006 Score=31.83 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILR 25 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~ 25 (125)
|.+.++|.+|+..+++..++|+.|+
T Consensus 46 f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 46 FSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred eCCHHHHHHHHHHCCCcEECCEEcC
Confidence 6899999999999999999999875
No 147
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.06 E-value=0.014 Score=36.67 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEE--EeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQE-YGNV---VGAR--VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~-~g~i---~~~~--~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
....|.|..||+.++++++...+.. ++.- ..+. ............-|++.|.+.++.......++|+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 3468999999999999998887776 5544 2222 1222122223445899999999999999999998763
No 148
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.89 E-value=0.094 Score=31.71 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCCCcEEEEcCCCCCC----CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 40 AETDFKLFVGNLSWSV----TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
.++..+|.|.=++..+ +-..+...++.||.|..+-. ..+..|.|.|.+..+|=.|+..++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4566788887555544 33456667789999987643 2355799999999999999998887 4456666
Q ss_pred EEEec
Q 033218 116 RVSLA 120 (125)
Q Consensus 116 ~v~~~ 120 (125)
.+.+-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66653
No 149
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.88 E-value=0.16 Score=29.43 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 42 TDFKLFVGNLSWS-VTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~-~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
.+..+.|-..|.. ++-++|..+.+.+- .+..+++.++. + ..+=.+++.|.+.+.|......+||..++
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-T-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-C-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3345555555555 45556665555554 56677888773 2 24557899999999999999999997654
No 150
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.84 E-value=0.011 Score=42.16 Aligned_cols=34 Identities=38% Similarity=0.645 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|..|++.|||+.+.|++|+|.|+...+.
T Consensus 67 ~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 67 FTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred cCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 6789999999999999999999999999855443
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=0.026 Score=40.83 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee---CCe-EEEEE
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGR-AMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~---~g~-~i~v~ 118 (125)
+++.|+|+|...|...|.....+ .|.-..+.++.+-.+....|||||.|.+.+.+....+.+||... .+. ...+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 45555565555554444444222 34555677888878888999999999999999999999999643 333 34455
Q ss_pred ecC
Q 033218 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
|++
T Consensus 469 YAr 471 (549)
T KOG4660|consen 469 YAR 471 (549)
T ss_pred hhh
Confidence 554
No 152
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.74 E-value=0.063 Score=33.96 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=43.3
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhC--CCeeCCeEEEEEecC
Q 033218 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMRVSLAQ 121 (125)
Q Consensus 56 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~--~~~~~g~~i~v~~~~ 121 (125)
....|+++|..++.+..+.....- +-..|.|.+.+.|.++...|+ +..+.|..+++-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999988776554331 237899999999999999999 899999999998875
No 153
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.67 E-value=0.0024 Score=48.42 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=63.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
...+|+++|++..+++.+|+..|..+|.+..+.|..... +....++|+.|.+...+..++..+.+..|....+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457999999999999999999999999999987765532 233457899999999999999999998886555555554
No 154
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.071 Score=36.05 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=50.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE-EEEEe
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA-MRVSL 119 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~-i~v~~ 119 (125)
+.=|.|-++|..-. ..|...|.+||.|...... ..-.|-+|.|.++.+|++|+.. +|..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 45577778888544 5678899999998765443 2345889999999999999984 777777653 44443
No 155
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=95.45 E-value=0.0081 Score=38.38 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|....||+.|+++|+|..++|+.|.|+++.
T Consensus 62 f~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 62 FHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeecchHHHHHHhhcceeeccceeeehhhh
Confidence 456789999999999999999999998764
No 156
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.86 E-value=0.035 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|++..||++|++.|+|..+.++.+.|.|..+.+
T Consensus 64 Yedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 64 YEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred ehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 578899999999999999999999999876544
No 157
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.51 E-value=0.041 Score=40.73 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
+.++..++||+|+-..+..+.++.++..+|.|..+.. -.|||..|.......+++..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---------DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh---------hhhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3456788999999999999999999999998865432 2289999999999999999998888887766554
No 158
>PLN03120 nucleic acid binding protein; Provisional
Probab=94.48 E-value=0.097 Score=34.84 Aligned_cols=32 Identities=6% Similarity=0.202 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|..|+. |||..|.|+.|.|.++....
T Consensus 50 F~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 50 FKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred eCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 789999999996 99999999999999876543
No 159
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.15 E-value=0.41 Score=25.03 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 54 SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
.++-++++..|..|+-.. +..+ . ..-+|.|.+..+|+++....++..+.++.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d-~-----tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD-R-----TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec-C-----CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999996432 2222 2 23599999999999999999999888887654
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=93.51 E-value=0.021 Score=36.87 Aligned_cols=94 Identities=23% Similarity=0.336 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.-.+..|+.-+||..+.+..+++.+-...... .|....+++.+...++.-|.+...++..+ .
T Consensus 56 f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sha--------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~-~ 120 (267)
T KOG4454|consen 56 FPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHA--------------PLDERVTEEILYEVFSQAGPIEGVRIPTD-N 120 (267)
T ss_pred cccccchhhhhhhcccchhccchhhcccccCCCcc--------------hhhhhcchhhheeeecccCCCCCcccccc-c
Confidence 44556677888888999998888887754333211 13345677888888899999988888888 4
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
+|..+.++++.+...-....++...+++.
T Consensus 121 d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 121 DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 47788889998876656666666555543
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.34 E-value=0.087 Score=34.76 Aligned_cols=30 Identities=33% Similarity=0.559 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|...++|.+|+..||+..+.|++|...++.
T Consensus 117 f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 117 FRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred cccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 678899999999999999999999998754
No 162
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=93.18 E-value=0.074 Score=31.58 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 2 STVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 2 ~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
-+.++|..|++.++|..+.+++|++.|-
T Consensus 86 y~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 86 YSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred ecchhHHHHHHHhccCcccccceeeecc
Confidence 4679999999999999999999999874
No 163
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.49 E-value=0.11 Score=39.88 Aligned_cols=72 Identities=32% Similarity=0.428 Sum_probs=58.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee--CCeEEEEEecCC
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--EGRAMRVSLAQG 122 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~--~g~~i~v~~~~~ 122 (125)
+.++.|.+-..+...|..+|..||.+......++ -.++.|.|...+.|..|...|+|..+ .|-..+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455666677788899999999999998777666 34799999999999999999999765 477788888764
No 164
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.59 E-value=0.15 Score=36.56 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCC-CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 44 FKLFVGNLSWSV-TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 44 ~~l~i~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+.+-+...|+.. +..+|...|.+||.|..+++.+. ...|.|.|.+.-+|.+|.. .++..|+++.|++.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 455565666654 55789999999999999887555 2358999999888877654 689999999999988554
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.43 E-value=0.23 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+-++|.+|+. ++|..+.|+.+++....+
T Consensus 77 F~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 77 FRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp ESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred ECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 567789999999 999999999999987543
No 166
>PLN03121 nucleic acid binding protein; Provisional
Probab=91.22 E-value=0.54 Score=31.02 Aligned_cols=32 Identities=6% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|..|+. |+|..|.+++|.|.......
T Consensus 51 F~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 51 FKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred ECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 789999999997 99999999999998765433
No 167
>PLN03213 repressor of silencing 3; Provisional
Probab=91.20 E-value=0.19 Score=36.45 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 5 EDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 5 ~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
+++.+||..|||..++|+.|+|+.+.
T Consensus 61 aEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 61 NSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHHHHHHHhcCCeecCceeEEeecc
Confidence 68999999999999999999998763
No 168
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.63 E-value=2 Score=29.22 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=36.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecH
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 95 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~ 95 (125)
..-|+++|||.++.-.+|+..+.+.+.+ .+.+.+. -+.+-||..|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 3569999999999999999999998643 2344444 2466799999764
No 169
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.93 E-value=1.8 Score=22.92 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHhcCCCe-----eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 53 WSVTTESLTQAFQEYGNV-----VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
..++..+|..++...+.+ -.+.+. ..|+|++.. .+.+..++..|++..+.|+++.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356777888888776433 334442 237888886 46888999999999999999998764
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.76 E-value=0.37 Score=32.71 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEec
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 28 (125)
|+..++|-+|+-.|||+.|+|+.++..|
T Consensus 336 F~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 336 FERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred eccHHHHHHHHHhcCCceecceeeehee
Confidence 7889999999999999999999877654
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.61 E-value=2.3 Score=23.60 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHhcCC--CccCCeEEEEeccCCCCCCC----CCCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q 033218 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKL----PLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~--~~~~~~~i~v~~~~~~~~~~----~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|..+.-|++.++ +.- ..+.+..+.|.-+.-..... -....+.++|-++|+|....+++|++.+.
T Consensus 5 F~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 5 FEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 667778888777 322 34556665554322111111 01234567899999999999999986554
No 172
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=88.36 E-value=0.24 Score=32.84 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+++|+..|+++|||+.++.++|+..-+.
T Consensus 239 f~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 239 FRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 689999999999999999999999887543
No 173
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.44 E-value=0.8 Score=31.12 Aligned_cols=74 Identities=27% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
..+++|++++...+.+.+...++..+|......+.........++++.+.|...+.+..++.........++.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 46788999999888888888888888866655554444667788999999999999999988655444444443
No 174
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=85.95 E-value=0.74 Score=29.62 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|++.+.|.-|-+.||++-|+++-|.+.+-.+.
T Consensus 99 FEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 99 FESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 78999999999999999999999999975543
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.73 E-value=0.95 Score=31.44 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
|.+.|||..||.+.+|..+.|+.|+..|.
T Consensus 172 y~~kedAarcIa~vDgs~~DGr~lkatYG 200 (480)
T COG5175 172 YSTKEDAARCIAEVDGSLLDGRVLKATYG 200 (480)
T ss_pred ecchHHHHHHHHHhccccccCceEeeecC
Confidence 67899999999999999999999999875
No 176
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.38 E-value=1.3 Score=23.20 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRV 26 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v 26 (125)
|.+.++|+++....+|..+.+..+.+
T Consensus 40 F~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 40 FNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999999988877654
No 177
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=84.68 E-value=3.4 Score=21.29 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCeeEEEEeec
Q 033218 58 ESLTQAFQEYGNVVGARVLYD 78 (125)
Q Consensus 58 ~~l~~~f~~~g~i~~~~~~~~ 78 (125)
.+|+++|+..|.|.-+.+...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999987665443
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=83.63 E-value=0.99 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCe-EEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGR-ILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~-~i~v~~~ 29 (125)
|.++.+|++|+. .||..+.|. .+-|.+.
T Consensus 61 Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 61 YDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp ESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred CCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 678999999999 999999885 4445554
No 179
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=81.68 E-value=1.6 Score=33.59 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q 033218 3 TVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 3 ~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
..++|.+|+.+|+...+.++.|++.|+-........-..-+..+=|.-+|.+--..+++.++.
T Consensus 466 ~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 466 RRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 568999999999999999999999998665443311111222233444576543344665554
No 180
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=81.09 E-value=1.6 Score=33.26 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|-+..||++|+++|+|+.+++..++.-|+..
T Consensus 226 fmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 226 FMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred ehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 4567899999999999999999999999743
No 181
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=80.44 E-value=2.7 Score=27.97 Aligned_cols=34 Identities=15% Similarity=0.413 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|...+||..||+.++|..+.|+++++.....+..
T Consensus 131 ~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 131 FNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred ecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 4567899999999999999999999887655443
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.36 E-value=2.2 Score=27.08 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhcC--CCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|..|...++ +..+.|..+++.|+..
T Consensus 38 f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 38 FESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred eCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 678899999999999 8999999999998743
No 183
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.59 E-value=8 Score=22.63 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=24.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeec
Q 033218 45 KLFVGNLSWS---------VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 94 (125)
Q Consensus 45 ~l~i~~lp~~---------~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~ 94 (125)
++.|-|+|.. .+.+.|.+.|+.|.... +....... .+.++++|.|.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECC
Confidence 4556666553 24578999999997654 44445532 478899999974
No 184
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.74 E-value=9.6 Score=19.97 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 58 ESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 58 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
++|.+.|...| .+..+.-+....++.+....||+.....+...+ ++=..+.+..+.|...+.++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCCC
Confidence 45777787777 667776666655666777788887654332221 22234567777777655543
No 185
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=75.07 E-value=3.1 Score=31.19 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+||..|+...++|+.|.|..+.
T Consensus 454 MSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 454 MSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 568899999999999999999999998763
No 186
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.47 E-value=14 Score=26.53 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHH
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~ 104 (125)
=.+.|-|.++|...-.++|...|..|+ .-..+.++-+ ..+|..|.+...|..|+-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 347888999999998899999999986 3345555544 3699999999999888864
No 187
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.76 E-value=5.8 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHh-cCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIEN-LDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~-~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.+.|..|..+ +|...|.|++|++.|.++
T Consensus 271 ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 271 FTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 6778889887776 677888999999999887
No 188
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=70.54 E-value=14 Score=19.53 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=38.7
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 58 ESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 58 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
++|.+.|...| .+..+.-+....+..+..+-+|+....-+-.. .|+=..++|.++.|.-...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 35777888888 66777777776667777778888764321111 2232345677777765443
No 189
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.19 E-value=0.55 Score=29.72 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHhcCCCccCCeEEEEec
Q 033218 2 STVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 2 ~~~~~a~~a~~~~~~~~~~~~~i~v~~ 28 (125)
++..+.-.||..|||..|.|+.|+|.-
T Consensus 85 EDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 85 EDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cCccceEEEEeccCCceecceeEEeee
Confidence 344445568899999999999999974
No 190
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.76 E-value=0.78 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=25.0
Q ss_pred EEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEE
Q 033218 45 KLFVGNLSWS-VTTESLTQAFQEYGNVVGARV 75 (125)
Q Consensus 45 ~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~ 75 (125)
=|.|.|||.. .+++.++.+.+.+|.+..+..
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 3667899997 577888999999999887643
No 191
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.27 E-value=6.4 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe-EEEEEecCC
Q 033218 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-AMRVSLAQG 122 (125)
Q Consensus 59 ~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~-~i~v~~~~~ 122 (125)
....+|.++.+...+++.+. .+..-|.|.+.+.|..+...++...+.|. .+..-++++
T Consensus 31 ~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 33556666665554444333 22356789999999999999999999877 666655543
No 192
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=65.23 E-value=6.8 Score=25.95 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG 72 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~ 72 (125)
....++|+-|+|...+++.|.++.++.|.+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 35567999999999999999999999985544
No 193
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.32 E-value=6.6 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|++.+++.+|.=.|++.-|.++.|.|.|+.
T Consensus 288 Fen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 288 FENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred ecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 788999999999999999999999999874
No 194
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=61.70 E-value=16 Score=23.32 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CceeEEEEEeecHHHHHHHHHH
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALES 104 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~~~fv~f~~~~~a~~~~~~ 104 (125)
.++|.. |.+..-++|..+.+ |.+..+.+-+. ..+ ...|-.|+.|.+.+.|.+.+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456655 33333345555555 68888877665 333 4567789999999999887653
No 195
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=59.11 E-value=0.94 Score=33.43 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
..+.+++.|+++.++-.+|..+|..+..+..+.+.....-.+....+++.|.-.-....+|-.|++..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3478899999999999999999999866665544333222223445677777555556666667765443
No 196
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.01 E-value=13 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=29.0
Q ss_pred CCCCCcEEEEcCCCCC------------CCHHHHHHHHhcCCCeeEEEEe
Q 033218 39 YAETDFKLFVGNLSWS------------VTTESLTQAFQEYGNVVGARVL 76 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~------------~~~~~l~~~f~~~g~i~~~~~~ 76 (125)
+.....+||+.++|-. .+++-|+..|..||.|..+.++
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3445678998888863 3567899999999999887654
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.48 E-value=39 Score=23.34 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC-------CCCceeEEEEEeecHHHHHHH----HHHhCC-
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE-------SGRSRGYGFVCYSTKAEMETA----LESLNG- 107 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~~~~~fv~f~~~~~a~~~----~~~l~~- 107 (125)
.-..+.|.+.|+..+++-...-.-|-.||+|+.+.+..+.. ..+......+-|-+++.+-.. ++.|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34566788889999998888888999999999998876640 112234467778776665432 223322
Q ss_pred -CeeCCeEEEEEec
Q 033218 108 -VELEGRAMRVSLA 120 (125)
Q Consensus 108 -~~~~g~~i~v~~~ 120 (125)
..+....|.++|.
T Consensus 92 K~~L~S~~L~lsFV 105 (309)
T PF10567_consen 92 KTKLKSESLTLSFV 105 (309)
T ss_pred HHhcCCcceeEEEE
Confidence 2345666666653
No 198
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=57.17 E-value=8.2 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhcCCCccCC-eEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLG-RILRVN 27 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~-~~i~v~ 27 (125)
|++..+|+.|++.+||+.+.- +...+.
T Consensus 112 ~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 112 YASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred ecChhhHHHHHHhcccceecccceEEee
Confidence 578999999999999999864 445553
No 199
>PHA01632 hypothetical protein
Probab=54.94 E-value=17 Score=18.29 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHhc
Q 033218 48 VGNLSWSVTTESLTQAFQE 66 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~ 66 (125)
|..+|...++++|+..+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4689999999999988865
No 200
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=46.75 E-value=30 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|+...+-..|.+..+|+.|.|+.|-|.+-..
T Consensus 150 ye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 150 YEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred eccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 5667788899999999999999999986533
No 201
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=46.50 E-value=11 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.++..|+.|+.-++++.+.+..|+|.++....
T Consensus 123 ~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 123 YEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred ecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 567889999999999999999999998765443
No 202
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=42.92 E-value=26 Score=23.20 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.+.+..|+. |||..+.++.+.+.+....
T Consensus 150 f~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 150 FSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred cccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 567889999999 9999999999999876443
No 203
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=42.20 E-value=95 Score=23.44 Aligned_cols=69 Identities=26% Similarity=0.422 Sum_probs=43.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCH-HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEE-EeecHHHHHHHHHHh
Q 033218 36 LPLYAETDFKLFVGNLSWSVTT-ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV-CYSTKAEMETALESL 105 (125)
Q Consensus 36 ~~~~~~~~~~l~i~~lp~~~~~-~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv-~f~~~~~a~~~~~~l 105 (125)
.+.-......||.+-.|-+.++ ++|++.+.+. ......+.+.+.+...-||||- -|-.....+...+.|
T Consensus 290 LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERL 360 (603)
T COG0481 290 LPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERL 360 (603)
T ss_pred CCCCCcCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhhhHHHHHHHHHHH
Confidence 3333445568999999987654 7899999887 4555556666677777777653 333344444333333
No 204
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=41.73 E-value=44 Score=16.18 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNV 70 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i 70 (125)
..+++.+.....+...|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888777678889999999999864
No 205
>PRK10905 cell division protein DamX; Validated
Probab=38.96 E-value=1.4e+02 Score=21.07 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=35.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEE--EEEeecHHHHHHHHHHhC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG--FVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~--fv~f~~~~~a~~~~~~l~ 106 (125)
..++|-|..+. +.+.++.+..+.|. ....+.....+|. .+|. +-.|.++++|++|+..|-
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCC
Confidence 34667776554 45777777777753 2222222323333 2332 346789999999998774
No 206
>PRK11901 hypothetical protein; Reviewed
Probab=37.79 E-value=1.5e+02 Score=20.99 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEE--EEEeecHHHHHHHHHHhC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG--FVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~--fv~f~~~~~a~~~~~~l~ 106 (125)
..++|-|..+ -.++.|..+..+.+ ...+.+......|+ .+|. +-.|.++++|..|+..|-
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCC
Confidence 3466777654 34677888887775 23344444333333 3454 336789999999998774
No 207
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.23 E-value=35 Score=15.54 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHhcCC
Q 033218 54 SVTTESLTQAFQEYG 68 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g 68 (125)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 568899999998764
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.22 E-value=73 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNV 70 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i 70 (125)
....|+|||+.++..-+..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456789999999999999998875443
No 209
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=37.19 E-value=14 Score=19.35 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHH
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQA 63 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~ 63 (125)
..+..++||++|..+-.+.=..+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~ 47 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSW 47 (67)
T ss_pred HcCceEEECCCChHHHHcCcchH
Confidence 35678999999998765533333
No 210
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.35 E-value=4.7 Score=29.21 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=45.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..++..+|...+++++.-+|.-||.|..+........+.....+|+.... ..++.+++.+....+.+..+++.+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~ 78 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAV 78 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhc
Confidence 34567788899999999999999988876555444445555556776542 344444443333333344444433
No 211
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=35.33 E-value=14 Score=26.48 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
.++++.+|+..+...++.+.|..+|.+....+.- +....+|-+.|..-....-++. .+|..
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchh
Confidence 6799999999999999999999999887655432 2334456677765444444433 34443
No 212
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=34.55 E-value=1e+02 Score=18.36 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=46.4
Q ss_pred CcEEEEcCCCCC---CCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 43 DFKLFVGNLSWS---VTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 43 ~~~l~i~~lp~~---~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
+..|.|++.... .+...+.+.+..-| .+..+.. + .+...|.|.+.++..+|...|+..--.+..+.++
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--E------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--e------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 345666655333 46678888898887 3333322 2 1247899999999999888887655556666666
Q ss_pred ecC
Q 033218 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 543
No 213
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=34.31 E-value=72 Score=17.24 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=17.2
Q ss_pred cEEEEcCCCCCC--------CHHHHHHHHhcCCCeeE
Q 033218 44 FKLFVGNLSWSV--------TTESLTQAFQEYGNVVG 72 (125)
Q Consensus 44 ~~l~i~~lp~~~--------~~~~l~~~f~~~g~i~~ 72 (125)
..|+|.|||..+ .-..|+.++..-..|..
T Consensus 35 ~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~F 71 (76)
T PF02946_consen 35 EAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRF 71 (76)
T ss_dssp TTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EE
T ss_pred CcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEE
Confidence 358899999865 34678888877666654
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.10 E-value=97 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=27.9
Q ss_pred eEEEEEeecHHHHHHHHHHhCCCeeC--CeEEEEEe
Q 033218 86 GYGFVCYSTKAEMETALESLNGVELE--GRAMRVSL 119 (125)
Q Consensus 86 ~~~fv~f~~~~~a~~~~~~l~~~~~~--g~~i~v~~ 119 (125)
=||.|++.+...|......++|..+. +..+-++|
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 36899999999999999999999886 44555555
No 215
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.72 E-value=53 Score=14.75 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHhcCCCe
Q 033218 54 SVTTESLTQAFQEYGNV 70 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g~i 70 (125)
.++.++|+..+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 47889999999999854
No 216
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=32.09 E-value=79 Score=18.05 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=16.9
Q ss_pred ceeEEEEEeecHHHHHHHHHHh
Q 033218 84 SRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 84 ~~~~~fv~f~~~~~a~~~~~~l 105 (125)
.--|++++|.+++...++...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3457889999999888887644
No 217
>PHA02531 20 portal vertex protein; Provisional
Probab=31.85 E-value=77 Score=23.67 Aligned_cols=65 Identities=29% Similarity=0.429 Sum_probs=37.4
Q ss_pred HHHHHhcCCCccCCeEEEEecc-CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC
Q 033218 8 NAVIENLDGREYLGRILRVNFS-DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 8 ~~a~~~~~~~~~~~~~i~v~~~-~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 83 (125)
.+|++-+|...+..-.+.+..- +.++ ..-..|-|+|||..-.+.-|+++..+|-. +++++..||.
T Consensus 252 h~Aikp~NqLrm~EDAlVIYRitRAPE-------RRvFYiDVGNlPk~KAeqYlr~vm~~ykN----klvYDa~TGe 317 (514)
T PHA02531 252 HRAIKPANQLKLLEDALVIYRITRAPE-------RRVFYIDVGNLPKRKAEEYLNNVMQRYKN----RVVYDANTGK 317 (514)
T ss_pred HHHHHHHHhhhhhhhceeeeeeccCcc-------ceEEEEEcCCCChhhHHHHHHHHHHHhhh----hEEEeCCCCe
Confidence 3566666665554443333321 1111 12344556899999999999999988732 2445545554
No 218
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.58 E-value=92 Score=16.85 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=22.1
Q ss_pred ceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 84 SRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 84 ~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
.+||-||+=.+.++...+++.+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 688999999999999999987776543
No 219
>PF14893 PNMA: PNMA
Probab=31.40 E-value=49 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhc
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQE 66 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~ 66 (125)
+.-+.+-|.|+|.++++.++++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34457889999999999988877754
No 220
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.93 E-value=1.1e+02 Score=22.06 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCC--CCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
...+.|..||...+...+.+.+..+- .+....+.....+ ..-.+.++|.|....+.......++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35677899999999998888877753 2222222211011 11245578999988887777778887654
No 221
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.54 E-value=1e+02 Score=16.04 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=17.9
Q ss_pred EEEEEeecHHHHHHHHHHhCCC
Q 033218 87 YGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 87 ~~fv~f~~~~~a~~~~~~l~~~ 108 (125)
+.++.|.+..+|.++-+.|...
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC
Confidence 5789999999998888877653
No 222
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=26.06 E-value=69 Score=15.13 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=16.0
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q 033218 48 VGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~~ 67 (125)
|-+++...+.++|+..|...
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 34788889999998888765
No 223
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=1.3e+02 Score=18.79 Aligned_cols=47 Identities=11% Similarity=0.384 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCeeEEEEeecCCCCCceeEE-EEEeecHHHHHHHHHHh
Q 033218 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYG-FVCYSTKAEMETALESL 105 (125)
Q Consensus 59 ~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~-fv~f~~~~~a~~~~~~l 105 (125)
.|+.+=..-|+|..+.-+..+.....+.|| ++.|.+++...-+.+..
T Consensus 43 ~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSRsG~HNmYkEy 90 (169)
T KOG0829|consen 43 KLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSRSGTHNMYKEY 90 (169)
T ss_pred HHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccCCcchHHHHHH
Confidence 444444556888888766665666667777 67887765554444433
No 224
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.87 E-value=32 Score=24.79 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHH--------HHHHHHhc--CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHH
Q 033218 44 FKLFVGNLSWSVTTE--------SLTQAFQE--YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~--------~l~~~f~~--~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~ 103 (125)
+.+|+.+++.....+ ++...|.. .+.+..+.+-++-.....+|..|++|.....+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 567777777754443 78888888 5666777777776567788888999999999998863
No 225
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.68 E-value=29 Score=24.46 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=36.3
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCC
Q 033218 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 56 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~ 108 (125)
....+.+++.+.|.+..-.+.+.- +-|.+|+..-..++++++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 346788889999977654443332 3567889888999999999998864
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.91 E-value=1.1e+02 Score=20.38 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
....+.|+|||..++..-|.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356788999999999999998887
No 227
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=23.55 E-value=37 Score=10.35 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=2.6
Q ss_pred EEcCCC
Q 033218 47 FVGNLS 52 (125)
Q Consensus 47 ~i~~lp 52 (125)
||.|.|
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 344444
No 228
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=23.05 E-value=92 Score=15.46 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHh
Q 033218 1 MSTVEDCNAVIEN 13 (125)
Q Consensus 1 f~~~~~a~~a~~~ 13 (125)
|.+.|+|..|...
T Consensus 32 f~t~eeAa~Ayd~ 44 (61)
T cd00018 32 FDTAEEAARAYDR 44 (61)
T ss_pred CCCHHHHHHHHHH
Confidence 6788888888763
No 229
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=21.99 E-value=98 Score=15.63 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHh
Q 033218 1 MSTVEDCNAVIEN 13 (125)
Q Consensus 1 f~~~~~a~~a~~~ 13 (125)
|.++|+|..|...
T Consensus 31 f~t~eeAa~Ayd~ 43 (64)
T smart00380 31 FDTAEEAARAYDR 43 (64)
T ss_pred CCCHHHHHHHHHH
Confidence 6788999888763
No 230
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=21.69 E-value=93 Score=15.02 Aligned_cols=20 Identities=5% Similarity=0.302 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q 033218 48 VGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~~ 67 (125)
|-+++...+.++|+..|...
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 34788889999999888765
No 231
>PHA00147 upper collar protein
Probab=21.35 E-value=1.5e+02 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.1
Q ss_pred cCCCCCCCHHHHHHHHhcCCCeeEE
Q 033218 49 GNLSWSVTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~i~~~ 73 (125)
.|||..++...|...+.++|.+..+
T Consensus 42 eglP~~idp~flEk~i~q~G~v~fy 66 (308)
T PHA00147 42 EGLPNTIDPSFLEKSIHQNGYVAFY 66 (308)
T ss_pred cCCCCCCCHHHHHHHHHHcCceEEE
Confidence 5999999999999999999987654
No 232
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.18 E-value=88 Score=14.08 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=6.9
Q ss_pred CHHHHHHHHH
Q 033218 3 TVEDCNAVIE 12 (125)
Q Consensus 3 ~~~~a~~a~~ 12 (125)
++|||-.|+-
T Consensus 24 tpEDAvEaLi 33 (35)
T PF08383_consen 24 TPEDAVEALI 33 (35)
T ss_pred CHHHHHHHHh
Confidence 6777777664
No 233
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.16 E-value=88 Score=17.59 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEec
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 28 (125)
|.+.++|..||..|...=+....|.|--
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 5788999999999887777777776653
No 234
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=20.43 E-value=2.9e+02 Score=18.76 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCCCCC----CHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEe-ecHHHHHHHHHHhCCCeeC
Q 033218 41 ETDFKLFVGNLSWSV----TTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCY-STKAEMETALESLNGVELE 111 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~----~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f-~~~~~a~~~~~~l~~~~~~ 111 (125)
.+...|||++|.... -..+|...+.+-+ .+..+.+ .....||+.... .+.++-..++..+.+..+.
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~-----~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fS 106 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQL-----RSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFS 106 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeec-----cccccccccccccccHHHHHHHHHHhhccCcc
Confidence 345789999887754 2244555554433 1221111 111233443322 3566777777766655443
No 235
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.08 E-value=1.9e+02 Score=19.17 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCC
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYG 68 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g 68 (125)
.+.|+|+|..++...+..++...|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 477899999999999999986443
Done!